RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9170
         (94 letters)



>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein
          2, PTBP2 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 88

 Score = 41.4 bits (96), Expect = 7e-07
 Identities = 25/50 (50%), Positives = 34/50 (68%)

Query: 1  MYDYDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKT 50
          +    + QAFLE+A E AA TMV Y++     LR + +Y+Q+SNHKELKT
Sbjct: 39 LMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKELKT 88


>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId:
          10090]}
          Length = 89

 Score = 34.7 bits (79), Expect = 3e-04
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 1  MYDYDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSN-HKELK 49
          +      +AF+EMA    A   V Y+TT  A + G+ V V  S  +K +K
Sbjct: 40 LILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKYKRIK 89


>d1x4fa1 d.58.7.1 (A:8-106) Matrin 3 {Mouse (Mus musculus) [TaxId:
          10090]}
          Length = 99

 Score = 28.8 bits (63), Expect = 0.042
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 1  MYDYDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSN-HKEL 48
          +    + QAF+EM     A  MV +        +GR V V  S  +K+L
Sbjct: 50 ILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKYKKL 98


>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 109

 Score = 28.6 bits (63), Expect = 0.066
 Identities = 9/52 (17%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 1  MYDYDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQ 52
          +    +  A ++MAD   A   +++      +L G+ + +  S H+ ++  +
Sbjct: 35 ILFNKKENALVQMADGNQAQLAMSHLNG--HKLHGKPIRITLSKHQNVQLPR 84


>d1txla_ b.60.1.4 (A:) Hypothetical protein YodA {Escherichia coli
           [TaxId: 562]}
          Length = 188

 Score = 26.3 bits (58), Expect = 0.50
 Identities = 15/64 (23%), Positives = 22/64 (34%), Gaps = 9/64 (14%)

Query: 2   YDYDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKELKTDQTHSNALLLH 61
           YDYD  +         +    V Y   C         Y+QFS+H       +H      H
Sbjct: 100 YDYDGYKIL----TYKSGKKGVRYLFECKDPESKAPKYIQFSDHIIAPRKSSH-----FH 150

Query: 62  LTIG 65
           + +G
Sbjct: 151 IFMG 154


>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19,
          Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 94

 Score = 24.5 bits (53), Expect = 1.5
 Identities = 5/39 (12%), Positives = 15/39 (38%), Gaps = 1/39 (2%)

Query: 9  AFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHKE 47
           F++   +  A             L GR + +++++ + 
Sbjct: 54 GFVDFITKQDAKKAFNALCHST-HLYGRRLVLEWADSEV 91


>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
          octamer-binding protein, NonO {Mouse (Mus musculus)
          [TaxId: 10090]}
          Length = 86

 Score = 23.4 bits (50), Expect = 3.3
 Identities = 9/46 (19%), Positives = 16/46 (34%), Gaps = 2/46 (4%)

Query: 1  MYDYDEIQAFLEMADECAASTMVTYFTTCVAQLRGRAVYVQFSNHK 46
              D+   F+ +     A             LRG+ + V+F+ H 
Sbjct: 39 FIHKDKGFGFIRLETRTLAEIAKVELDN--MPLRGKQLRVRFACHS 82


>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 102

 Score = 23.2 bits (49), Expect = 4.6
 Identities = 4/19 (21%), Positives = 13/19 (68%)

Query: 32  QLRGRAVYVQFSNHKELKT 50
           +L G+ + ++F  +K+ ++
Sbjct: 84  KLYGKILVIEFGKNKKQRS 102


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.330    0.137    0.411 

Gapped
Lambda     K      H
   0.267   0.0477    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 332,744
Number of extensions: 11519
Number of successful extensions: 45
Number of sequences better than 10.0: 1
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 13
Length of query: 94
Length of database: 2,407,596
Length adjustment: 57
Effective length of query: 37
Effective length of database: 1,624,986
Effective search space: 60124482
Effective search space used: 60124482
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 47 (22.5 bits)