BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9171
(118 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q66H20|PTBP2_RAT Polypyrimidine tract-binding protein 2 OS=Rattus norvegicus
GN=Ptbp2 PE=2 SV=1
Length = 531
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 34/55 (61%), Positives = 41/55 (74%)
Query: 22 RQKSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAE 76
K D PSRV+HIR +P EVTE E+I LG+PFG+VTN+L+LKGKNQ L L E
Sbjct: 50 EDKMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATE 104
>sp|Q91Z31|PTBP2_MOUSE Polypyrimidine tract-binding protein 2 OS=Mus musculus GN=Ptbp2
PE=1 SV=2
Length = 531
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 34/55 (61%), Positives = 41/55 (74%)
Query: 22 RQKSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAE 76
K D PSRV+HIR +P EVTE E+I LG+PFG+VTN+L+LKGKNQ L L E
Sbjct: 50 EDKMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATE 104
>sp|Q9UKA9|PTBP2_HUMAN Polypyrimidine tract-binding protein 2 OS=Homo sapiens GN=PTBP2
PE=1 SV=1
Length = 531
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 34/55 (61%), Positives = 41/55 (74%)
Query: 22 RQKSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAE 76
K D PSRV+HIR +P EVTE E+I LG+PFG+VTN+L+LKGKNQ L L E
Sbjct: 50 EDKMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATE 104
>sp|O95758|PTBP3_HUMAN Polypyrimidine tract-binding protein 3 OS=Homo sapiens GN=PTBP3
PE=1 SV=2
Length = 552
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 33/58 (56%), Positives = 44/58 (75%)
Query: 19 KLDRQKSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAE 76
K R + PSRV+H+R IP +VTEAEII LG+PFG+VTN+L+LKGK+Q L + +E
Sbjct: 47 KFKRDRPPCSPSRVLHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKGKSQAFLEMASE 104
>sp|Q9Z118|PTBP3_RAT Polypyrimidine tract-binding protein 3 OS=Rattus norvegicus
GN=Ptbp3 PE=2 SV=1
Length = 523
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 31/58 (53%), Positives = 43/58 (74%)
Query: 19 KLDRQKSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAE 76
K + PSRV+H+R IP +VTEAE+I LG+PFG+VTN+L+LKGK+Q L + +E
Sbjct: 18 KFKGDRPPCSPSRVLHLRKIPCDVTEAEVISLGLPFGKVTNLLMLKGKSQAFLEMASE 75
>sp|P17225|PTBP1_MOUSE Polypyrimidine tract-binding protein 1 OS=Mus musculus GN=Ptbp1
PE=1 SV=2
Length = 527
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 29/48 (60%), Positives = 40/48 (83%)
Query: 29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAE 76
PSRVIH+R +P++VTE E+I LG+PFG+VTN+L+LKGKNQ + + E
Sbjct: 56 PSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTE 103
>sp|Q29099|PTBP1_PIG Polypyrimidine tract-binding protein 1 OS=Sus scrofa GN=PTBP1 PE=2
SV=1
Length = 557
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 30/48 (62%), Positives = 40/48 (83%)
Query: 29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAE 76
PSRVIHIR +P++VTE E+I LG+PFG+VTN+L+LKGKNQ + + E
Sbjct: 57 PSRVIHIRKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTE 104
>sp|Q00438|PTBP1_RAT Polypyrimidine tract-binding protein 1 OS=Rattus norvegicus
GN=Ptbp1 PE=1 SV=1
Length = 555
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 29/48 (60%), Positives = 40/48 (83%)
Query: 29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAE 76
PSRVIH+R +P++VTE E+I LG+PFG+VTN+L+LKGKNQ + + E
Sbjct: 56 PSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMSTE 103
>sp|Q8WN55|PTBP1_BOVIN Polypyrimidine tract-binding protein 1 OS=Bos taurus GN=PTBP1 PE=2
SV=1
Length = 531
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/48 (62%), Positives = 39/48 (81%)
Query: 29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAE 76
PSRVIHIR +P +VTE E+I LG+PFG+VTN+L+LKGKNQ + + E
Sbjct: 57 PSRVIHIRKLPGDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMHTE 104
>sp|Q8BHD7|PTBP3_MOUSE Polypyrimidine tract-binding protein 3 OS=Mus musculus GN=Ptbp3
PE=2 SV=1
Length = 523
Score = 70.5 bits (171), Expect = 3e-12, Method: Composition-based stats.
Identities = 30/48 (62%), Positives = 41/48 (85%)
Query: 29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAE 76
PSRV+H+R IP +VTEAE+I LG+PFG+VTN+L+LKGK+Q L + +E
Sbjct: 28 PSRVLHLRKIPCDVTEAEVISLGLPFGKVTNLLMLKGKSQAFLEMASE 75
>sp|P26599|PTBP1_HUMAN Polypyrimidine tract-binding protein 1 OS=Homo sapiens GN=PTBP1
PE=1 SV=1
Length = 531
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 30/48 (62%), Positives = 39/48 (81%)
Query: 29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAE 76
PSRVIHIR +P +VTE E+I LG+PFG+VTN+L+LKGKNQ + + E
Sbjct: 57 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTE 104
>sp|E9PT37|RBM20_RAT RNA-binding protein 20 OS=Rattus norvegicus GN=Rbm20 PE=2 SV=1
Length = 1207
Score = 49.7 bits (117), Expect = 6e-06, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 32/44 (72%), Gaps = 1/44 (2%)
Query: 31 RVIHIRNIPN-EVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHL 73
RV+HI N+P TE ++I+LG+PFG+VTN +++K NQ L +
Sbjct: 521 RVVHICNLPEGSCTENDVINLGLPFGKVTNYILMKSTNQAFLEM 564
Score = 37.7 bits (86), Expect = 0.019, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 74 EAEIIHLGIPFGRVTNVLVLKGKNQVSLISGYRNRQSA 111
E ++I+LG+PFG+VTN +++K NQ L Y A
Sbjct: 535 ENDVINLGLPFGKVTNYILMKSTNQAFLEMAYTEAAQA 572
>sp|Q3UQS8|RBM20_MOUSE RNA-binding protein 20 OS=Mus musculus GN=Rbm20 PE=1 SV=3
Length = 1199
Score = 49.7 bits (117), Expect = 6e-06, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 32/44 (72%), Gaps = 1/44 (2%)
Query: 31 RVIHIRNIPN-EVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHL 73
RV+HI N+P TE ++I+LG+PFG+VTN +++K NQ L +
Sbjct: 520 RVVHICNLPEGSCTENDVINLGLPFGKVTNYILMKSTNQAFLEM 563
Score = 37.7 bits (86), Expect = 0.019, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 74 EAEIIHLGIPFGRVTNVLVLKGKNQVSLISGYRNRQSA 111
E ++I+LG+PFG+VTN +++K NQ L Y A
Sbjct: 534 ENDVINLGLPFGKVTNYILMKSTNQAFLEMAYTEAAQA 571
>sp|Q5T481|RBM20_HUMAN RNA-binding protein 20 OS=Homo sapiens GN=RBM20 PE=1 SV=3
Length = 1227
Score = 49.7 bits (117), Expect = 6e-06, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 32/44 (72%), Gaps = 1/44 (2%)
Query: 31 RVIHIRNIPN-EVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHL 73
RV+HI N+P TE ++I+LG+PFG+VTN +++K NQ L +
Sbjct: 518 RVVHICNLPEGSCTENDVINLGLPFGKVTNYILMKSTNQAFLEM 561
Score = 37.7 bits (86), Expect = 0.019, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 74 EAEIIHLGIPFGRVTNVLVLKGKNQVSLISGYRNRQSA 111
E ++I+LG+PFG+VTN +++K NQ L Y A
Sbjct: 532 ENDVINLGLPFGKVTNYILMKSTNQAFLEMAYTEAAQA 569
>sp|Q9FGL9|PTBP2_ARATH Polypyrimidine tract-binding protein homolog 2 OS=Arabidopsis
thaliana GN=At5g53180 PE=2 SV=1
Length = 429
Score = 48.9 bits (115), Expect = 9e-06, Method: Composition-based stats.
Identities = 24/54 (44%), Positives = 33/54 (61%)
Query: 29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGI 82
PS+V+H+RN+P E TE E+I LG PFG V N G N+ +E E ++ I
Sbjct: 16 PSKVLHLRNLPWECTEEELIELGKPFGTVVNTKCNVGANRNQAFIEFEDLNQAI 69
>sp|Q6ICX4|PTBP3_ARATH Polypyrimidine tract-binding protein homolog 3 OS=Arabidopsis
thaliana GN=At1g43190 PE=2 SV=1
Length = 432
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 36/47 (76%)
Query: 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLE 74
+ S+V+H+RN+ +E++E +++ L PFG +T +++L+ KNQ LL ++
Sbjct: 3 ESSKVVHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQ 49
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTN--VLVLKGKNQLLLHL 73
P+++IH+ +P +VTE E+++ G V N V + GK Q L+
Sbjct: 352 SPTKMIHLSTLPQDVTEEEVMNHVQEHGAVVNTKVFEMNGKKQALVQF 399
>sp|Q9MAC5|PTBP1_ARATH Polypyrimidine tract-binding protein homolog 1 OS=Arabidopsis
thaliana GN=PTB PE=2 SV=1
Length = 399
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQ 68
PS+V+H+RN+P E E E+I L FG++ N G N+
Sbjct: 15 PSKVVHLRNLPWECVEEELIDLCKRFGKIVNTKSNVGANR 54
>sp|Q8K310|MATR3_MOUSE Matrin-3 OS=Mus musculus GN=Matr3 PE=1 SV=1
Length = 846
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 9 KYTLVMVVQAKLDRQKSDFKPS--RVIHIRNIPNE-VTEAEIIHLGIPFGRVTNVLVLKG 65
KY + + K D QK D K RVIH+ N+P+ +++ ++ L P+G++ N ++++
Sbjct: 473 KYKRIKKPEGKPD-QKFDQKQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM 531
Query: 66 KNQLLLHLE 74
K+Q + +E
Sbjct: 532 KSQAFIEME 540
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Query: 16 VQAKLDRQKSDFKPSRVIHIRNIPN-EVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHL- 73
+Q QK + SRV+HI + + +++ L PFG ++N L+L N+ + +
Sbjct: 383 LQGPRHMQKGRVETSRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMA 442
Query: 74 EAEIIHLGIPFGRVTNVLVLKGKNQVSLISGYR 106
E + + T LV +V L Y+
Sbjct: 443 TTEDAQAAVDYYTTTPALVFGKPVRVHLSQKYK 475
>sp|P43243|MATR3_HUMAN Matrin-3 OS=Homo sapiens GN=MATR3 PE=1 SV=2
Length = 847
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 9 KYTLVMVVQAKLDRQKSDFKPS--RVIHIRNIPNE-VTEAEIIHLGIPFGRVTNVLVLKG 65
KY + + K D QK D K RVIH+ N+P+ +++ ++ L P+G++ N ++++
Sbjct: 473 KYKRIKKPEGKPD-QKFDQKQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM 531
Query: 66 KNQLLLHLE 74
K+Q + +E
Sbjct: 532 KSQAFIEME 540
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Query: 16 VQAKLDRQKSDFKPSRVIHIRNIPN-EVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHL- 73
+Q QK + SRV+HI + + +++ L PFG ++N L+L N+ + +
Sbjct: 383 LQGPRHMQKGRVETSRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMA 442
Query: 74 EAEIIHLGIPFGRVTNVLVLKGKNQVSLISGYR 106
E + + T LV +V L Y+
Sbjct: 443 TTEDAQAAVDYYTTTPALVFGKPVRVHLSQKYK 475
>sp|P43244|MATR3_RAT Matrin-3 OS=Rattus norvegicus GN=Matr3 PE=1 SV=2
Length = 845
Score = 37.7 bits (86), Expect = 0.024, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 9 KYTLVMVVQAKLDRQKSDFKPS--RVIHIRNIPNE-VTEAEIIHLGIPFGRVTNVLVLKG 65
KY + + K D +K D K RVIH+ N+P+ +++ ++ L P+G++ N ++++
Sbjct: 473 KYKRIKKPEGKPD-EKFDQKQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM 531
Query: 66 KNQLLLHLE 74
K+Q + +E
Sbjct: 532 KSQAFIEME 540
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Query: 16 VQAKLDRQKSDFKPSRVIHIRNIPN-EVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHL- 73
+Q QK + SRV+HI + + +++ L PFG ++N L+L N+ + +
Sbjct: 383 LQGPRHMQKGRVETSRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMA 442
Query: 74 EAEIIHLGIPFGRVTNVLVLKGKNQVSLISGYR 106
E + + T LV +V L Y+
Sbjct: 443 TTEDAQAAVDYYTTTPALVFGKPVRVHLSQKYK 475
>sp|Q8R081|HNRPL_MOUSE Heterogeneous nuclear ribonucleoprotein L OS=Mus musculus GN=Hnrnpl
PE=1 SV=2
Length = 586
Score = 33.5 bits (75), Expect = 0.43, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 27/45 (60%)
Query: 30 SRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLE 74
S V+HIR + + V EA+++ FG ++ V+V+ K Q L+ E
Sbjct: 98 SPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFE 142
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 29 PSRVIHIRNIPNEVTEAEIIHLGIPFG--RVTNVLVLKGKNQ 68
PS V+H N P EVTE + G R T+V V GK++
Sbjct: 496 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSE 537
>sp|P14866|HNRPL_HUMAN Heterogeneous nuclear ribonucleoprotein L OS=Homo sapiens GN=HNRNPL
PE=1 SV=2
Length = 589
Score = 33.5 bits (75), Expect = 0.43, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 27/45 (60%)
Query: 30 SRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLE 74
S V+HIR + + V EA+++ FG ++ V+V+ K Q L+ E
Sbjct: 101 SPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFE 145
>sp|P23449|FLIH_BACSU Probable flagellar assembly protein FliH OS=Bacillus subtilis
(strain 168) GN=fliH PE=3 SV=2
Length = 208
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 51/110 (46%), Gaps = 17/110 (15%)
Query: 12 LVMVVQAKLDRQKSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLL 71
L + + K+ +QKSD K + ++ ++ + NEV E + I + + + K + Q LL
Sbjct: 96 LAVALAKKVWQQKSDDKEAFLLLVQQVINEVKEYDDISIYVDPYYYETIFQQKDEIQQLL 155
Query: 72 HLEAEI------------IHLGIPFGRV-----TNVLVLKGKNQVSLISG 104
+ E + ++ PFGRV T ++ LK K +L +G
Sbjct: 156 YKECRLGIYADEKAQKGTCYIETPFGRVDASVDTQLMQLKDKLLTALEAG 205
>sp|Q6CQR6|MRD1_KLULA Multiple RNA-binding domain-containing protein 1 OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) GN=MRD1 PE=3 SV=1
Length = 878
Score = 32.7 bits (73), Expect = 0.67, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 19 KLDRQKSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLV 62
K + K+ + RVI ++N P T EI L +PFG++ +L+
Sbjct: 504 KFAQLKNSERDDRVILVKNFPYGTTREEIAELFLPFGKLQRLLL 547
>sp|Q61464|ZN638_MOUSE Zinc finger protein 638 OS=Mus musculus GN=Znf638 PE=1 SV=2
Length = 1960
Score = 32.7 bits (73), Expect = 0.70, Method: Composition-based stats.
Identities = 24/100 (24%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Query: 15 VVQAKLDRQKSDFKPSRVIHIRNIPNE-VTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHL 73
+ Q K + +S + ++ + +P + TE +I +PFG++++VL++ +N+ L +
Sbjct: 661 LAQRKPQKDQS-LSSNSILLVSELPEDGFTEEDIRKAFLPFGKISDVLLVPCRNEAYLEM 719
Query: 74 EAEIIHLGIPFGRVTNVLVLKGKNQVSLISGYRNRQSAAL 113
E I T LV+KGK+ + G + Q+ +
Sbjct: 720 ELRKAVTSIMKYIETMPLVIKGKSVKVCVPGKKKPQNKEM 759
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 30 SRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEA 75
+R +H+ N+P + + ++ +G FG+V + + KN+++L LE+
Sbjct: 1005 NRFVHLDNLPEDGLQC-VLCVGHQFGKVDRYMFMSNKNKVILQLES 1049
Score = 29.3 bits (64), Expect = 6.6, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 32 VIHIRNIPNE-VTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHL 73
V+ I N+PN+ + EI +L PFG + ++LVL + + +
Sbjct: 903 VVFISNLPNKGYSTEEIYNLAKPFGALKDILVLSSHKKAYIEI 945
>sp|Q7S6N6|PABP_NEUCR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=pab-1 PE=3 SV=1
Length = 764
Score = 32.3 bits (72), Expect = 0.82, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 17 QAKLDRQKSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTN 59
Q+K + K++F ++++NI NEVT+ E L FG VT+
Sbjct: 230 QSKFEEMKANFTN---VYVKNINNEVTDEEFRELFAKFGEVTS 269
>sp|Q14966|ZN638_HUMAN Zinc finger protein 638 OS=Homo sapiens GN=ZNF638 PE=1 SV=2
Length = 1978
Score = 32.3 bits (72), Expect = 0.92, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Query: 16 VQAKLDRQKSDFKPSRVIHIRNIPNE-VTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLE 74
+Q KL +++S V+ I +P + TE ++ L PFG+V +VL++ + + L +E
Sbjct: 662 LQRKLRKEQS-LHYGSVLLITELPEDGCTEEDVRKLFQPFGKVNDVLIVPYRKEAYLEME 720
Query: 75 AEIIHLGIPFGRVTNVLVLKGKNQVSLISGYRNRQS 110
+ I T L +KGK+ + G + Q+
Sbjct: 721 FKEAITAIMKYIETTPLTIKGKSVKICVPGKKKAQN 756
>sp|Q8CIN6|CELF3_MOUSE CUGBP Elav-like family member 3 OS=Mus musculus GN=Celf3 PE=2 SV=1
Length = 465
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 33 IHIRNIPNEVTEAEIIHLGIPFGRVTN--VLVLKGKNQ 68
I I ++P E T++EI+ + +PFG V + V V + NQ
Sbjct: 382 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQ 419
>sp|Q5SZQ8|CELF3_HUMAN CUGBP Elav-like family member 3 OS=Homo sapiens GN=CELF3 PE=1 SV=1
Length = 465
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 33 IHIRNIPNEVTEAEIIHLGIPFGRVTN--VLVLKGKNQ 68
I I ++P E T++EI+ + +PFG V + V V + NQ
Sbjct: 382 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQ 419
>sp|Q08E07|CELF3_BOVIN CUGBP Elav-like family member 3 OS=Bos taurus GN=CELF3 PE=2 SV=1
Length = 461
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 33 IHIRNIPNEVTEAEIIHLGIPFGRVTN--VLVLKGKNQ 68
I I ++P E T++EI+ + +PFG V + V V + NQ
Sbjct: 378 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQ 415
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pab1 PE=1 SV=2
Length = 653
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 32/51 (62%), Gaps = 3/51 (5%)
Query: 17 QAKLDRQKSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKN 67
Q+K++ K++F ++I+N+ E+TE E L FG +T++ ++K +N
Sbjct: 250 QSKVEALKANFTN---VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQN 297
>sp|Q7ZWM3|CEL3B_XENLA CUGBP Elav-like family member 3-B OS=Xenopus laevis GN=tnrc4-b PE=2
SV=1
Length = 462
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 33 IHIRNIPNEVTEAEIIHLGIPFGRVTN--VLVLKGKNQ 68
I I ++P E T++EI+ + +PFG V + V V + NQ
Sbjct: 379 IFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQ 416
>sp|Q91579|CEL3A_XENLA CUGBP Elav-like family member 3-A OS=Xenopus laevis GN=tnrc4-a PE=2
SV=2
Length = 462
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 33 IHIRNIPNEVTEAEIIHLGIPFGRVTN--VLVLKGKNQ 68
I I ++P E T++EI+ + +PFG V + V V + NQ
Sbjct: 379 IFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQ 416
>sp|Q75A83|MRD1_ASHGO Multiple RNA-binding domain-containing protein 1 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=MRD1 PE=3 SV=2
Length = 838
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLV 62
+ R+I ++N P+ T E+ L +PFG++ +L+
Sbjct: 485 RDDRIILVKNFPHGTTREELAELFLPFGKIERLLM 519
>sp|Q921F4|HNRLL_MOUSE Heterogeneous nuclear ribonucleoprotein L-like OS=Mus musculus
GN=Hnrpll PE=1 SV=3
Length = 591
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 30 SRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLE 74
S V+H+R + V EA+++ FG + V+++ K Q L+ E
Sbjct: 124 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFE 168
>sp|Q8WVV9|HNRLL_HUMAN Heterogeneous nuclear ribonucleoprotein L-like OS=Homo sapiens
GN=HNRPLL PE=1 SV=1
Length = 542
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 30 SRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLE 74
S V+H+R + V EA+++ FG + V+++ K Q L+ E
Sbjct: 75 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFE 119
>sp|A5DW14|PABP_LODEL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS
2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=PAB1 PE=3
SV=1
Length = 661
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 17 QAKLDRQKSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK 64
++KL+ K+++ I+++NI TE E L PFG++T++ + K
Sbjct: 237 ESKLEEMKANYTN---IYVKNIDLAYTEKEFEELFAPFGKITSIYLEK 281
>sp|Q9SJG8|AML2_ARATH Protein MEI2-like 2 OS=Arabidopsis thaliana GN=ML2 PE=2 SV=2
Length = 843
Score = 30.0 bits (66), Expect = 4.7, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNV 60
PSR + +RNI + V ++E+ L PFG + ++
Sbjct: 196 PSRTLFVRNINSSVEDSELSALFEPFGEIRSL 227
>sp|A1CRM1|PABP_ASPCL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 /
DSM 816 / NCTC 3887 / NRRL 1) GN=pab1 PE=3 SV=1
Length = 754
Score = 29.6 bits (65), Expect = 5.1, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 17 QAKLDRQKSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTN 59
Q+K D K++F I+I+NI +VTE E + FG +T+
Sbjct: 221 QSKFDEMKANFTN---IYIKNIDPDVTEEEFRKIFEQFGEITS 260
>sp|Q2UK72|PABP_ASPOR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=pab1 PE=3 SV=1
Length = 765
Score = 29.6 bits (65), Expect = 5.9, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 17 QAKLDRQKSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTN 59
Q+K + K++F ++I+NI +VTE E L FG +T+
Sbjct: 219 QSKFEEMKANFTN---VYIKNIDQDVTEEEFRELFEKFGEITS 258
>sp|O13674|MUG24_SCHPO Meiotically up-regulated gene 24 protein OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=mug24 PE=1 SV=1
Length = 654
Score = 29.6 bits (65), Expect = 6.2, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 25 SDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHL 73
S+ SR + I N+P+ E EI FG++ ++ +L KN +H
Sbjct: 293 SNTAASRNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKKNIAFVHF 341
>sp|Q4QSN4|TPSBS_PSEMZ (E)-gamma-bisabolene synthase OS=Pseudotsuga menziesii GN=TPS3 PE=1
SV=1
Length = 815
Score = 29.3 bits (64), Expect = 7.9, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 39 PNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGI 82
P+ + EA+ +HLG+P+ L+ + + L +L E IH GI
Sbjct: 179 PSMLREAQSLHLGLPYDLPYIQLLQTKRQERLANLSREKIHGGI 222
>sp|Q09702|NRD1_SCHPO Negative regulator of differentiation 1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=nrd1 PE=1 SV=1
Length = 529
Score = 28.9 bits (63), Expect = 9.1, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 31 RVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHL 73
R + + N+PN +TE EI PFG + + ++ +N +H
Sbjct: 206 RNVFLGNLPNGITEDEIREDLEPFGPIDQIKIVTERNIAFVHF 248
>sp|Q19706|EIF3G_CAEEL Eukaryotic translation initiation factor 3 subunit G
OS=Caenorhabditis elegans GN=eif-3.G PE=3 SV=1
Length = 256
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 19 KLDRQKSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGK 66
++DR +SD RV N+P E+ E E+ L GRV + + + K
Sbjct: 167 QIDRNRSDENTCRVT---NLPQEMNEDELRDLFGKIGRVIRIFIARDK 211
>sp|Q5NCQ5|DPH1_MOUSE Diphthamide biosynthesis protein 1 OS=Mus musculus GN=Dph1 PE=1
SV=1
Length = 438
Score = 28.9 bits (63), Expect = 9.4, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 23/34 (67%)
Query: 54 FGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRV 87
+G + L +G ++L HLE+++ +LG+PF R+
Sbjct: 285 WGLILGTLGRQGSPKILEHLESQLRNLGLPFVRL 318
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.141 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,274,997
Number of Sequences: 539616
Number of extensions: 1388027
Number of successful extensions: 3224
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 3118
Number of HSP's gapped (non-prelim): 121
length of query: 118
length of database: 191,569,459
effective HSP length: 85
effective length of query: 33
effective length of database: 145,702,099
effective search space: 4808169267
effective search space used: 4808169267
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)