Query psy9171
Match_columns 118
No_of_seqs 110 out of 619
Neff 5.4
Searched_HMMs 46136
Date Fri Aug 16 20:41:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9171.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9171hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1190|consensus 99.8 1.2E-20 2.6E-25 158.6 4.2 91 15-106 14-104 (492)
2 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.8 4.5E-19 9.8E-24 149.8 7.8 78 29-106 1-78 (481)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 1E-16 2.2E-21 127.8 8.8 76 29-106 268-349 (352)
4 PLN03134 glycine-rich RNA-bind 99.7 4.4E-16 9.5E-21 114.1 8.1 77 28-106 32-114 (144)
5 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.6 1.2E-15 2.7E-20 128.9 8.1 80 27-108 272-353 (481)
6 PF00076 RRM_1: RNA recognitio 99.6 1E-15 2.2E-20 95.2 5.4 65 33-99 1-70 (70)
7 PF14259 RRM_6: RNA recognitio 99.6 1.8E-15 3.8E-20 95.7 6.4 65 33-99 1-70 (70)
8 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.6 4.3E-15 9.4E-20 118.4 8.3 76 29-106 2-83 (352)
9 TIGR01659 sex-lethal sex-letha 99.5 1.7E-14 3.6E-19 118.9 6.8 76 28-105 105-186 (346)
10 KOG4206|consensus 99.5 2.4E-14 5.2E-19 112.3 5.2 80 26-107 5-91 (221)
11 KOG1190|consensus 99.5 7.9E-14 1.7E-18 117.7 7.4 102 2-105 383-490 (492)
12 smart00362 RRM_2 RNA recogniti 99.5 1.4E-13 2.9E-18 83.6 6.3 67 32-100 1-71 (72)
13 TIGR01622 SF-CC1 splicing fact 99.5 1.3E-13 2.9E-18 113.9 8.3 75 28-104 184-264 (457)
14 PLN03120 nucleic acid binding 99.4 2.5E-13 5.4E-18 108.9 7.6 72 30-104 4-78 (260)
15 PF13893 RRM_5: RNA recognitio 99.4 2.3E-13 4.9E-18 83.7 5.5 55 47-103 1-56 (56)
16 PLN03213 repressor of silencin 99.4 2.5E-13 5.5E-18 117.4 6.4 78 28-107 8-89 (759)
17 TIGR01622 SF-CC1 splicing fact 99.4 4.5E-13 9.8E-18 110.8 7.4 75 28-105 87-167 (457)
18 TIGR01642 U2AF_lg U2 snRNP aux 99.4 5E-13 1.1E-17 111.7 7.6 76 29-106 294-375 (509)
19 KOG0125|consensus 99.4 3.1E-13 6.6E-18 111.6 5.8 75 30-106 96-174 (376)
20 TIGR01628 PABP-1234 polyadenyl 99.4 6.8E-13 1.5E-17 113.1 7.5 78 28-107 283-365 (562)
21 COG0724 RNA-binding proteins ( 99.4 9E-13 2E-17 95.9 6.8 73 30-104 115-193 (306)
22 TIGR01648 hnRNP-R-Q heterogene 99.4 9E-13 2E-17 115.2 7.5 76 28-107 231-308 (578)
23 TIGR01628 PABP-1234 polyadenyl 99.4 8.1E-13 1.8E-17 112.6 7.0 71 32-104 2-78 (562)
24 KOG0126|consensus 99.4 2.7E-13 5.9E-18 104.9 3.4 72 29-102 34-111 (219)
25 TIGR01645 half-pint poly-U bin 99.4 1.1E-12 2.4E-17 115.2 7.2 75 29-105 203-283 (612)
26 KOG0109|consensus 99.4 5.5E-13 1.2E-17 108.9 4.8 72 32-107 4-75 (346)
27 TIGR01659 sex-lethal sex-letha 99.3 1.9E-12 4.2E-17 106.7 7.1 78 29-108 192-277 (346)
28 cd00590 RRM RRM (RNA recogniti 99.3 3.5E-12 7.6E-17 77.7 6.5 69 32-102 1-74 (74)
29 TIGR01645 half-pint poly-U bin 99.3 2.7E-12 5.9E-17 112.8 7.5 75 28-104 105-185 (612)
30 KOG0114|consensus 99.3 3.6E-12 7.8E-17 91.3 6.6 76 28-105 16-94 (124)
31 smart00360 RRM RNA recognition 99.3 2.8E-12 6.2E-17 77.3 5.3 64 35-100 1-70 (71)
32 KOG0107|consensus 99.3 4.7E-12 1E-16 97.2 6.5 81 27-109 7-88 (195)
33 KOG0148|consensus 99.3 6.8E-12 1.5E-16 101.7 7.2 75 28-104 162-236 (321)
34 PLN03121 nucleic acid binding 99.3 8.8E-12 1.9E-16 99.2 7.4 71 30-103 5-78 (243)
35 TIGR01642 U2AF_lg U2 snRNP aux 99.3 7.6E-12 1.7E-16 104.6 7.2 72 28-102 173-256 (509)
36 KOG0108|consensus 99.3 1.1E-11 2.3E-16 105.5 6.6 78 31-110 19-102 (435)
37 KOG0111|consensus 99.3 3.7E-12 8E-17 101.3 3.5 80 29-110 9-94 (298)
38 TIGR01648 hnRNP-R-Q heterogene 99.2 2.9E-11 6.4E-16 105.8 7.1 73 30-104 58-136 (578)
39 KOG0109|consensus 99.2 1.7E-11 3.6E-16 100.3 4.7 81 24-108 72-152 (346)
40 KOG0117|consensus 99.2 2.5E-11 5.4E-16 103.4 5.2 72 31-106 260-331 (506)
41 KOG1456|consensus 99.2 3.2E-11 6.8E-16 101.5 4.7 82 27-108 28-109 (494)
42 KOG0113|consensus 99.2 7.7E-11 1.7E-15 96.4 6.8 80 25-106 96-181 (335)
43 KOG0127|consensus 99.2 5.5E-11 1.2E-15 103.5 6.1 81 29-111 116-201 (678)
44 KOG0105|consensus 99.1 6.9E-11 1.5E-15 92.1 6.0 76 28-105 4-82 (241)
45 KOG0415|consensus 99.1 4.5E-11 9.7E-16 100.2 4.8 79 25-105 234-318 (479)
46 KOG0127|consensus 99.1 1.7E-10 3.6E-15 100.6 7.2 85 28-114 290-384 (678)
47 KOG0149|consensus 99.1 1.2E-10 2.5E-15 92.6 5.4 69 32-103 14-88 (247)
48 KOG0131|consensus 99.1 8E-11 1.7E-15 90.9 3.2 74 29-104 8-87 (203)
49 KOG0122|consensus 99.1 4.2E-10 9E-15 90.1 7.3 78 28-107 187-270 (270)
50 KOG0145|consensus 99.0 7.4E-10 1.6E-14 90.1 6.5 75 30-106 278-358 (360)
51 KOG0148|consensus 99.0 7.5E-10 1.6E-14 90.0 5.0 74 32-107 64-143 (321)
52 KOG0117|consensus 98.9 1.7E-09 3.6E-14 92.4 6.5 90 15-106 65-164 (506)
53 KOG0130|consensus 98.9 8.9E-10 1.9E-14 82.3 3.9 72 30-103 72-149 (170)
54 KOG4207|consensus 98.9 1.2E-09 2.5E-14 86.3 3.8 73 32-106 15-93 (256)
55 KOG0123|consensus 98.8 4.5E-09 9.7E-14 87.7 4.8 68 33-103 79-150 (369)
56 KOG0147|consensus 98.8 4.1E-09 8.9E-14 91.4 4.0 75 33-109 281-361 (549)
57 KOG0121|consensus 98.8 6.1E-09 1.3E-13 77.1 4.2 72 29-102 35-112 (153)
58 KOG0110|consensus 98.8 7E-09 1.5E-13 92.1 5.3 70 33-104 518-596 (725)
59 KOG0116|consensus 98.8 1.2E-08 2.5E-13 86.8 5.9 77 30-109 288-370 (419)
60 KOG0153|consensus 98.8 1.4E-08 3.1E-13 84.5 6.3 76 29-105 227-302 (377)
61 KOG0132|consensus 98.8 1E-08 2.3E-13 92.0 5.8 77 28-106 419-495 (894)
62 KOG0124|consensus 98.8 3.4E-09 7.4E-14 89.5 2.6 68 32-101 115-188 (544)
63 smart00361 RRM_1 RNA recogniti 98.8 1.4E-08 3.1E-13 65.2 4.7 55 44-100 2-69 (70)
64 KOG4208|consensus 98.7 3.3E-08 7.1E-13 77.4 5.9 75 28-104 47-128 (214)
65 KOG0110|consensus 98.7 1.4E-08 3.1E-13 90.2 4.4 77 30-108 613-695 (725)
66 KOG0145|consensus 98.7 6.7E-08 1.5E-12 78.8 7.0 77 30-108 40-123 (360)
67 KOG4206|consensus 98.7 5.2E-08 1.1E-12 76.8 6.2 76 27-104 143-220 (221)
68 KOG0144|consensus 98.7 1.5E-08 3.3E-13 86.5 3.3 78 28-107 122-207 (510)
69 KOG0123|consensus 98.5 1E-07 2.2E-12 79.6 3.0 75 28-104 268-347 (369)
70 KOG0146|consensus 98.5 8.2E-08 1.8E-12 78.5 2.2 75 31-107 286-366 (371)
71 KOG4660|consensus 98.3 1.3E-07 2.9E-12 82.2 1.0 74 24-99 69-143 (549)
72 KOG0106|consensus 98.3 8.3E-07 1.8E-11 69.8 4.5 69 32-104 3-71 (216)
73 KOG0124|consensus 98.3 8.8E-07 1.9E-11 75.1 4.6 69 32-102 212-286 (544)
74 KOG0144|consensus 98.3 8.4E-07 1.8E-11 76.0 4.3 80 25-107 420-505 (510)
75 KOG4661|consensus 98.2 1E-06 2.2E-11 78.0 4.0 76 28-105 403-484 (940)
76 KOG4205|consensus 98.2 1.5E-06 3.3E-11 71.4 4.8 78 30-110 6-89 (311)
77 KOG4205|consensus 98.2 2.7E-06 6E-11 69.9 6.2 74 29-105 96-175 (311)
78 KOG0533|consensus 98.2 1.9E-06 4.2E-11 68.8 4.8 77 31-109 84-165 (243)
79 PF08777 RRM_3: RNA binding mo 98.1 3.7E-06 7.9E-11 59.0 4.1 70 32-101 3-75 (105)
80 KOG0131|consensus 98.1 3.5E-06 7.5E-11 65.4 4.0 78 28-107 94-178 (203)
81 KOG4212|consensus 98.1 3.2E-06 6.9E-11 72.9 3.9 70 32-103 538-608 (608)
82 KOG1456|consensus 98.1 9.2E-06 2E-10 69.0 6.4 81 25-107 282-364 (494)
83 KOG0151|consensus 98.0 8.3E-06 1.8E-10 73.4 5.4 82 28-111 171-262 (877)
84 KOG1457|consensus 98.0 4.1E-06 8.9E-11 67.1 2.1 58 30-87 210-269 (284)
85 KOG4212|consensus 97.9 1.5E-05 3.2E-10 68.9 5.5 75 29-105 43-123 (608)
86 KOG4454|consensus 97.9 2.7E-06 5.9E-11 67.8 0.7 75 28-104 7-85 (267)
87 KOG4209|consensus 97.8 1.7E-05 3.7E-10 62.7 4.0 75 28-105 99-179 (231)
88 KOG1548|consensus 97.8 2.4E-05 5.3E-10 65.5 5.0 77 30-108 134-223 (382)
89 KOG0146|consensus 97.8 2.4E-05 5.3E-10 64.2 4.9 76 29-106 18-101 (371)
90 KOG0106|consensus 97.8 1.3E-05 2.8E-10 63.2 3.1 65 32-100 101-165 (216)
91 KOG1457|consensus 97.7 0.00011 2.3E-09 59.1 6.1 75 30-106 34-118 (284)
92 KOG4211|consensus 97.6 0.00011 2.5E-09 63.6 6.2 74 28-104 101-180 (510)
93 KOG0120|consensus 97.6 4.7E-05 1E-09 66.2 2.9 69 33-103 292-366 (500)
94 KOG4211|consensus 97.5 0.00018 3.8E-09 62.5 5.1 72 28-103 8-83 (510)
95 PF04059 RRM_2: RNA recognitio 97.4 0.00043 9.2E-09 48.3 5.8 80 32-113 3-94 (97)
96 KOG1855|consensus 97.3 0.00012 2.6E-09 62.8 2.4 57 28-84 229-304 (484)
97 PF14605 Nup35_RRM_2: Nup53/35 97.3 0.00067 1.5E-08 42.1 4.5 53 30-83 1-53 (53)
98 KOG3152|consensus 97.0 0.00019 4.1E-09 58.2 0.6 65 31-97 75-157 (278)
99 KOG1996|consensus 97.0 0.0005 1.1E-08 57.1 2.5 73 28-102 279-363 (378)
100 PF11608 Limkain-b1: Limkain b 96.9 0.0017 3.7E-08 44.9 4.1 68 32-105 4-76 (90)
101 COG5175 MOT2 Transcriptional r 96.8 0.0017 3.6E-08 55.0 4.0 73 32-106 116-203 (480)
102 KOG4210|consensus 96.7 0.0013 2.9E-08 53.3 2.8 88 16-106 170-264 (285)
103 KOG0147|consensus 96.6 0.00066 1.4E-08 59.5 0.7 72 30-104 179-256 (549)
104 KOG0129|consensus 96.5 0.0034 7.3E-08 54.9 4.3 61 28-88 257-328 (520)
105 KOG4307|consensus 96.4 0.0085 1.8E-07 54.6 6.1 69 31-101 868-942 (944)
106 KOG1365|consensus 96.2 0.0074 1.6E-07 51.8 4.7 54 31-84 162-224 (508)
107 KOG0128|consensus 96.2 0.0025 5.3E-08 58.5 1.7 71 31-103 737-812 (881)
108 KOG4574|consensus 96.0 0.0029 6.3E-08 58.3 1.6 76 30-105 298-373 (1007)
109 KOG2416|consensus 95.9 0.0034 7.3E-08 56.1 1.5 87 16-105 431-521 (718)
110 PF08675 RNA_bind: RNA binding 95.9 0.019 4E-07 39.6 4.7 51 31-84 10-60 (87)
111 PF08952 DUF1866: Domain of un 95.9 0.016 3.4E-07 43.4 4.6 75 26-105 23-106 (146)
112 KOG1548|consensus 95.8 0.012 2.5E-07 49.7 4.0 71 29-101 264-347 (382)
113 KOG0129|consensus 95.5 0.026 5.6E-07 49.5 5.0 63 24-86 364-433 (520)
114 KOG1365|consensus 95.4 0.009 1.9E-07 51.3 1.9 70 32-103 282-359 (508)
115 KOG4676|consensus 95.3 0.037 8.1E-07 47.6 5.5 82 31-114 8-98 (479)
116 KOG0226|consensus 95.2 0.0069 1.5E-07 49.4 0.8 76 32-109 192-273 (290)
117 KOG4307|consensus 94.9 0.068 1.5E-06 48.9 6.2 75 31-111 3-82 (944)
118 KOG1995|consensus 94.7 0.028 6.1E-07 47.2 3.1 79 28-108 64-156 (351)
119 KOG2314|consensus 94.5 0.043 9.4E-07 49.0 3.9 64 30-95 58-132 (698)
120 PF05172 Nup35_RRM: Nup53/35/4 94.5 0.15 3.3E-06 35.6 5.9 68 32-103 8-89 (100)
121 KOG0120|consensus 94.2 0.087 1.9E-06 46.2 5.0 70 28-102 397-488 (500)
122 PF04847 Calcipressin: Calcipr 94.0 0.13 2.8E-06 39.5 5.1 64 43-108 8-73 (184)
123 KOG2202|consensus 93.9 0.016 3.5E-07 46.9 -0.1 59 51-111 90-153 (260)
124 KOG2193|consensus 93.6 0.047 1E-06 47.6 2.2 72 32-105 3-75 (584)
125 KOG0115|consensus 92.0 0.072 1.6E-06 43.4 1.2 69 30-98 31-106 (275)
126 KOG4849|consensus 91.0 0.12 2.6E-06 44.2 1.5 71 32-104 82-161 (498)
127 KOG2591|consensus 89.5 0.39 8.4E-06 43.1 3.5 77 21-98 163-244 (684)
128 PF03467 Smg4_UPF3: Smg-4/UPF3 89.3 0.32 7E-06 36.8 2.6 75 31-107 8-99 (176)
129 PF15023 DUF4523: Protein of u 89.1 0.97 2.1E-05 34.3 4.9 60 25-85 81-144 (166)
130 KOG0112|consensus 88.7 0.12 2.6E-06 48.1 -0.2 74 28-103 370-448 (975)
131 KOG0128|consensus 87.7 0.054 1.2E-06 50.0 -3.0 54 32-85 669-728 (881)
132 KOG0112|consensus 86.3 0.69 1.5E-05 43.4 3.2 78 26-105 451-530 (975)
133 PF10309 DUF2414: Protein of u 79.0 4.1 8.8E-05 26.3 3.8 50 32-84 7-60 (62)
134 KOG2253|consensus 77.1 1 2.2E-05 40.9 0.8 72 25-101 35-106 (668)
135 KOG2068|consensus 76.6 0.68 1.5E-05 38.8 -0.4 72 31-104 78-161 (327)
136 PF03880 DbpA: DbpA RNA bindin 75.6 1.5 3.3E-05 28.3 1.1 59 40-103 11-74 (74)
137 KOG2135|consensus 75.1 2.5 5.4E-05 37.3 2.6 72 30-104 372-444 (526)
138 KOG4483|consensus 73.6 3.8 8.3E-05 35.8 3.3 55 30-84 391-445 (528)
139 KOG4285|consensus 69.8 7.1 0.00015 32.9 4.0 48 46-96 212-259 (350)
140 KOG4410|consensus 69.1 9.4 0.0002 32.2 4.5 64 17-80 317-381 (396)
141 PF14893 PNMA: PNMA 67.4 4.7 0.0001 33.7 2.5 60 27-96 15-85 (331)
142 PF07292 NID: Nmi/IFP 35 domai 66.7 4.2 9.2E-05 27.9 1.8 37 10-50 36-72 (88)
143 PF07576 BRAP2: BRCA1-associat 65.9 35 0.00075 24.1 6.4 56 28-83 11-71 (110)
144 cd04489 ExoVII_LU_OBF ExoVII_L 61.1 7.2 0.00016 24.4 2.0 28 55-83 6-33 (78)
145 PF11061 DUF2862: Protein of u 52.6 54 0.0012 21.4 5.0 41 36-76 10-52 (64)
146 KOG0804|consensus 51.7 27 0.00059 30.8 4.5 55 28-82 72-131 (493)
147 KOG2193|consensus 49.9 0.54 1.2E-05 41.2 -6.0 76 28-105 78-156 (584)
148 KOG4676|consensus 42.6 6.9 0.00015 34.1 -0.4 54 30-83 151-206 (479)
149 COG0724 RNA-binding proteins ( 41.2 42 0.00092 23.9 3.6 40 25-64 220-259 (306)
150 PF00398 RrnaAD: Ribosomal RNA 39.3 29 0.00064 27.1 2.7 36 29-64 96-133 (262)
151 PF11767 SET_assoc: Histone ly 36.6 1.1E+02 0.0024 19.7 4.6 54 41-99 11-64 (66)
152 COG4691 StbC Plasmid stability 33.1 16 0.00036 24.7 0.3 12 32-43 3-14 (80)
153 KOG4008|consensus 32.6 40 0.00088 27.5 2.5 41 21-62 32-72 (261)
154 COG0030 KsgA Dimethyladenosine 31.8 27 0.00058 28.3 1.4 36 30-65 95-130 (259)
155 PF10567 Nab6_mRNP_bdg: RNA-re 30.8 32 0.00069 28.8 1.7 52 28-79 13-77 (309)
156 PF14111 DUF4283: Domain of un 30.1 50 0.0011 23.0 2.4 60 38-102 29-88 (153)
157 TIGR00755 ksgA dimethyladenosi 30.1 64 0.0014 24.9 3.2 32 32-63 96-127 (253)
158 PF11173 DUF2960: Protein of u 26.8 37 0.0008 23.0 1.2 19 96-114 14-32 (79)
159 PRK00274 ksgA 16S ribosomal RN 25.7 44 0.00095 26.3 1.6 32 31-63 106-138 (272)
160 PTZ00338 dimethyladenosine tra 25.6 41 0.00088 27.3 1.4 31 33-63 104-134 (294)
161 PF10865 DUF2703: Domain of un 25.6 1.5E+02 0.0033 21.3 4.3 41 47-98 32-72 (120)
162 PF03544 TonB_C: Gram-negative 25.5 78 0.0017 19.4 2.5 47 52-102 25-71 (79)
163 KOG3447|consensus 24.6 69 0.0015 24.0 2.3 37 25-61 56-95 (150)
164 KOG2318|consensus 24.4 86 0.0019 28.7 3.3 38 27-64 171-213 (650)
165 KOG2891|consensus 20.1 67 0.0015 27.2 1.7 34 30-63 149-194 (445)
166 COG0820 Predicted Fe-S-cluster 20.1 1E+02 0.0022 26.2 2.7 73 29-104 120-197 (349)
No 1
>KOG1190|consensus
Probab=99.81 E-value=1.2e-20 Score=158.58 Aligned_cols=91 Identities=40% Similarity=0.554 Sum_probs=82.2
Q ss_pred eeeeccCCCCCCCCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeC
Q psy9171 15 VVQAKLDRQKSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLK 94 (118)
Q Consensus 15 ~~~~~~~~~~~~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~ 94 (118)
..||+.+.. .+..||||||+||||+++||+||++|+.|||+|.+++++++++|||+||+|+++|..++.+|..-++.++
T Consensus 14 ~~kf~~~~~-~~~~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGknQAflem~d~~sAvtmv~~y~~~~p~lr 92 (492)
T KOG1190|consen 14 SKKFKYTQR-SMAEPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGKNQAFLEMADEESAVTMVNYYTSVTPVLR 92 (492)
T ss_pred CCCcccccc-cccCCcceeEeccCCccccHHHHHHhcccccceeeeeeeccchhhhhhhcchhhhhheeecccccCcccc
Confidence 457777763 3447999999999999999999999999999999999999999999999999999999887777799999
Q ss_pred CeeeEEEecccc
Q psy9171 95 GKNQVSLISGYR 106 (118)
Q Consensus 95 Gr~v~V~~S~~~ 106 (118)
|++++++||.++
T Consensus 93 ~~~~yiq~sn~~ 104 (492)
T KOG1190|consen 93 GQPIYIQYSNHS 104 (492)
T ss_pred CcceeehhhhHH
Confidence 999999998653
No 2
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.78 E-value=4.5e-19 Score=149.79 Aligned_cols=78 Identities=32% Similarity=0.482 Sum_probs=74.4
Q ss_pred CCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEecccc
Q psy9171 29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGYR 106 (118)
Q Consensus 29 PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~~ 106 (118)
||+||||+|||+++||+||.++|++||.|.++.++++|++|||||++.++|..|+..+..|+..+.|++|+|+||+++
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~ 78 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPGKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQ 78 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECCCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCc
Confidence 899999999999999999999999999999999999999999999999999999976667899999999999999764
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.69 E-value=1e-16 Score=127.77 Aligned_cols=76 Identities=17% Similarity=0.157 Sum_probs=70.0
Q ss_pred CCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEEe
Q psy9171 29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLI 102 (118)
Q Consensus 29 PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~ 102 (118)
++.+|||+|||+++++++|.++|++||.|.+++++.+ ||+|||+|++.++|.+|+.. +|+..+.||+|.|.|
T Consensus 268 ~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~--lnG~~~~gr~i~V~~ 345 (352)
T TIGR01661 268 AGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILS--LNGYTLGNRVLQVSF 345 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHH--hCCCEECCeEEEEEE
Confidence 3458999999999999999999999999999999853 89999999999999999865 899999999999999
Q ss_pred cccc
Q psy9171 103 SGYR 106 (118)
Q Consensus 103 S~~~ 106 (118)
...+
T Consensus 346 ~~~~ 349 (352)
T TIGR01661 346 KTNK 349 (352)
T ss_pred ccCC
Confidence 9764
No 4
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.65 E-value=4.4e-16 Score=114.10 Aligned_cols=77 Identities=14% Similarity=0.071 Sum_probs=70.1
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL 101 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~ 101 (118)
.++..|||+|||+++||++|.++|++||.|.++.++.+ |++|||+|++.++|..|+.. +|+..|.|++|.|.
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~--lng~~i~Gr~l~V~ 109 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE--MDGKELNGRHIRVN 109 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHH--cCCCEECCEEEEEE
Confidence 45778999999999999999999999999999999843 79999999999999999854 88999999999999
Q ss_pred ecccc
Q psy9171 102 ISGYR 106 (118)
Q Consensus 102 ~S~~~ 106 (118)
+++.+
T Consensus 110 ~a~~~ 114 (144)
T PLN03134 110 PANDR 114 (144)
T ss_pred eCCcC
Confidence 98654
No 5
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.62 E-value=1.2e-15 Score=128.95 Aligned_cols=80 Identities=20% Similarity=0.158 Sum_probs=73.9
Q ss_pred CCCCcEEEeCCCCC-cccHHHHHHhccCCCceeEEEEecc-CceEEEeecchhhhhcccccccccceeeCCeeeEEEecc
Q psy9171 27 FKPSRVIHIRNIPN-EVTEAEIIHLGIPFGRVTNVLVLKG-KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISG 104 (118)
Q Consensus 27 ~~PS~vL~V~NLP~-~vte~dL~~Lf~~fG~V~~v~l~~~-kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~ 104 (118)
++|+.+|||+|||+ .+|+++|.+||++||.|.++.++++ +|+|||+|.+.++|..|+.+ +|+..+.|++|+|.+|+
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~~g~afV~f~~~~~A~~Ai~~--lng~~l~g~~l~v~~s~ 349 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNKKETALIEMADPYQAQLALTH--LNGVKLFGKPLRVCPSK 349 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCEEEEEECCHHHHHHHHHH--hCCCEECCceEEEEEcc
Confidence 57899999999998 6999999999999999999999875 69999999999999999965 89999999999999998
Q ss_pred ccch
Q psy9171 105 YRNR 108 (118)
Q Consensus 105 ~~~~ 108 (118)
++++
T Consensus 350 ~~~~ 353 (481)
T TIGR01649 350 QQNV 353 (481)
T ss_pred cccc
Confidence 8654
No 6
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.61 E-value=1e-15 Score=95.20 Aligned_cols=65 Identities=22% Similarity=0.306 Sum_probs=60.3
Q ss_pred EEeCCCCCcccHHHHHHhccCCCceeEEEEecc-----CceEEEeecchhhhhcccccccccceeeCCeeeE
Q psy9171 33 IHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG-----KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQV 99 (118)
Q Consensus 33 L~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~-----kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~ 99 (118)
|||+|||+++|+++|.++|++||.|..+.+..+ ++.|||+|++.++|..|+.. +|+..+.|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~--l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEE--LNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHH--HTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHH--cCCCEECccCcC
Confidence 799999999999999999999999999999863 78999999999999999864 889999999885
No 7
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.61 E-value=1.8e-15 Score=95.72 Aligned_cols=65 Identities=20% Similarity=0.220 Sum_probs=58.2
Q ss_pred EEeCCCCCcccHHHHHHhccCCCceeEEEEecc-----CceEEEeecchhhhhcccccccccceeeCCeeeE
Q psy9171 33 IHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG-----KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQV 99 (118)
Q Consensus 33 L~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~-----kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~ 99 (118)
|||+|||+++|++||.++|++||.|.++.+... +++|||+|.+.++|..|+.. .++..++||.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~--~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALEL--LNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHH--HTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHH--CCCcEECCEEcC
Confidence 799999999999999999999999999999875 69999999999999999865 568999999885
No 8
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.59 E-value=4.3e-15 Score=118.44 Aligned_cols=76 Identities=13% Similarity=0.069 Sum_probs=69.3
Q ss_pred CCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEEe
Q psy9171 29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLI 102 (118)
Q Consensus 29 PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~ 102 (118)
|...|||+|||+++||+||.++|++||+|.++.++++ ||+|||+|.+.++|..|+.. +|+..+.|+++.|.|
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~--l~g~~l~g~~i~v~~ 79 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNS--LNGLRLQNKTIKVSY 79 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhh--cccEEECCeeEEEEe
Confidence 4568999999999999999999999999999999853 58999999999999999864 899999999999999
Q ss_pred cccc
Q psy9171 103 SGYR 106 (118)
Q Consensus 103 S~~~ 106 (118)
++.+
T Consensus 80 a~~~ 83 (352)
T TIGR01661 80 ARPS 83 (352)
T ss_pred eccc
Confidence 8643
No 9
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.53 E-value=1.7e-14 Score=118.92 Aligned_cols=76 Identities=11% Similarity=0.140 Sum_probs=69.5
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL 101 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~ 101 (118)
.++.+|||+|||+++||++|.++|+.||.|..++++.+ |++|||||.++++|..|+.. +|+..+.|++|.|.
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~--LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKN--LNGITVRNKRLKVS 182 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHH--cCCCccCCceeeee
Confidence 45778999999999999999999999999999999753 58999999999999999854 89999999999999
Q ss_pred eccc
Q psy9171 102 ISGY 105 (118)
Q Consensus 102 ~S~~ 105 (118)
|++.
T Consensus 183 ~a~p 186 (346)
T TIGR01659 183 YARP 186 (346)
T ss_pred cccc
Confidence 9864
No 10
>KOG4206|consensus
Probab=99.50 E-value=2.4e-14 Score=112.33 Aligned_cols=80 Identities=14% Similarity=0.188 Sum_probs=73.3
Q ss_pred CCCCCcEEEeCCCCCcccHHHHHH----hccCCCceeEEEEec---cCceEEEeecchhhhhcccccccccceeeCCeee
Q psy9171 26 DFKPSRVIHIRNIPNEVTEAEIIH----LGIPFGRVTNVLVLK---GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQ 98 (118)
Q Consensus 26 ~~~PS~vL~V~NLP~~vte~dL~~----Lf~~fG~V~~v~l~~---~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v 98 (118)
+..|+.+|||+||++.+..++|.. ||++||+|+++...+ .||||||.|.+.++|..|+. .+++..+-||++
T Consensus 5 ~~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r--~l~gfpFygK~m 82 (221)
T KOG4206|consen 5 SVNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALR--ALQGFPFYGKPM 82 (221)
T ss_pred ccCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHH--HhcCCcccCchh
Confidence 457888999999999999999987 999999999999984 58999999999999999986 599999999999
Q ss_pred EEEeccccc
Q psy9171 99 VSLISGYRN 107 (118)
Q Consensus 99 ~V~~S~~~~ 107 (118)
+++||+..+
T Consensus 83 riqyA~s~s 91 (221)
T KOG4206|consen 83 RIQYAKSDS 91 (221)
T ss_pred heecccCcc
Confidence 999998754
No 11
>KOG1190|consensus
Probab=99.48 E-value=7.9e-14 Score=117.71 Aligned_cols=102 Identities=22% Similarity=0.207 Sum_probs=86.5
Q ss_pred CCCCcceecchheeeeeccCCCC---CCCCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEe--ccCceEEEeecch
Q psy9171 2 KDIGGNVKYTLVMVVQAKLDRQK---SDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVL--KGKNQLLLHLEAE 76 (118)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~--~~kgqAFVEm~~~ 76 (118)
+|.|+|-||.++|+||||++.+. +++|||.+||+.|+|++++|+||..+|.+-|...+.-.. +++.+|+++++++
T Consensus 383 ~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd~kmal~q~~sv 462 (492)
T KOG1190|consen 383 EDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKMALPQLESV 462 (492)
T ss_pred ccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCCcceeecccCCh
Confidence 58999999999999999999876 688999999999999999999999999999887665544 3689999999999
Q ss_pred hhhhcccccccccceee-CCeeeEEEeccc
Q psy9171 77 IIHLGIPFGRVTNVLVL-KGKNQVSLISGY 105 (118)
Q Consensus 77 e~A~~ai~~~~~n~~~i-~Gr~v~V~~S~~ 105 (118)
|+|..|.-. +..-.+ .+.-++|.||++
T Consensus 463 eeA~~ali~--~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 463 EEAIQALID--LHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred hHhhhhccc--cccccCCCCceEEEEeecc
Confidence 999999643 333333 445899999986
No 12
>smart00362 RRM_2 RNA recognition motif.
Probab=99.47 E-value=1.4e-13 Score=83.59 Aligned_cols=67 Identities=22% Similarity=0.244 Sum_probs=61.1
Q ss_pred EEEeCCCCCcccHHHHHHhccCCCceeEEEEeccC----ceEEEeecchhhhhcccccccccceeeCCeeeEE
Q psy9171 32 VIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGK----NQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVS 100 (118)
Q Consensus 32 vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~k----gqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V 100 (118)
.|||+|||+++++++|.++|++||.|.++.+...+ +.|||+|.+.++|..|+.. +++..+.|+++.+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~--~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEA--LNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHH--hCCcEECCEEEee
Confidence 48999999999999999999999999999998765 9999999999999999854 7789999999876
No 13
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.47 E-value=1.3e-13 Score=113.92 Aligned_cols=75 Identities=16% Similarity=0.115 Sum_probs=69.1
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec------cCceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK------GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL 101 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~------~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~ 101 (118)
+++++|||+|||+++|+++|.++|++||.|..+.++. .+|+|||+|.+.++|..|+.. +|+..|.|++|.|.
T Consensus 184 p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~--l~g~~i~g~~i~v~ 261 (457)
T TIGR01622 184 PNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEV--MNGFELAGRPIKVG 261 (457)
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHh--cCCcEECCEEEEEE
Confidence 5578999999999999999999999999999999984 368999999999999999854 88999999999999
Q ss_pred ecc
Q psy9171 102 ISG 104 (118)
Q Consensus 102 ~S~ 104 (118)
|+.
T Consensus 262 ~a~ 264 (457)
T TIGR01622 262 YAQ 264 (457)
T ss_pred Ecc
Confidence 975
No 14
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.44 E-value=2.5e-13 Score=108.92 Aligned_cols=72 Identities=10% Similarity=0.020 Sum_probs=67.3
Q ss_pred CcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc---CceEEEeecchhhhhcccccccccceeeCCeeeEEEecc
Q psy9171 30 SRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG---KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISG 104 (118)
Q Consensus 30 S~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~---kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~ 104 (118)
.++|||+|||+++||+||.++|+.||.|.++.+..+ +++|||+|+++++|..|+. +|+..|.||+|.|..+.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All---LnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL---LSGATIVDQSVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH---hcCCeeCCceEEEEecc
Confidence 568999999999999999999999999999999864 6899999999999999983 89999999999999986
No 15
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.44 E-value=2.3e-13 Score=83.69 Aligned_cols=55 Identities=15% Similarity=0.082 Sum_probs=50.5
Q ss_pred HHHhccCCCceeEEEEeccC-ceEEEeecchhhhhcccccccccceeeCCeeeEEEec
Q psy9171 47 IIHLGIPFGRVTNVLVLKGK-NQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLIS 103 (118)
Q Consensus 47 L~~Lf~~fG~V~~v~l~~~k-gqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S 103 (118)
|.++|++||+|.++.+.+.+ ++|||||++.++|..|+.. +|+..+.|++|.|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~--l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQ--LNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHH--HTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHH--hCCCEECCcEEEEEEC
Confidence 67899999999999999887 9999999999999999865 8899999999999997
No 16
>PLN03213 repressor of silencing 3; Provisional
Probab=99.42 E-value=2.5e-13 Score=117.38 Aligned_cols=78 Identities=14% Similarity=0.137 Sum_probs=69.6
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec--cCceEEEeecch--hhhhcccccccccceeeCCeeeEEEec
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK--GKNQLLLHLEAE--IIHLGIPFGRVTNVLVLKGKNQVSLIS 103 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~--~kgqAFVEm~~~--e~A~~ai~~~~~n~~~i~Gr~v~V~~S 103 (118)
...-.|||+||++++|++||..+|++||.|.++.+++ +||||||||.+. +++..|+.. +|+..++||.|+|+-|
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISa--LNGAEWKGR~LKVNKA 85 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFST--YNGCVWKGGRLRLEKA 85 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHH--hcCCeecCceeEEeec
Confidence 3445799999999999999999999999999999985 699999999987 678889854 9999999999999999
Q ss_pred cccc
Q psy9171 104 GYRN 107 (118)
Q Consensus 104 ~~~~ 107 (118)
+-..
T Consensus 86 KP~Y 89 (759)
T PLN03213 86 KEHY 89 (759)
T ss_pred cHHH
Confidence 7543
No 17
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.41 E-value=4.5e-13 Score=110.77 Aligned_cols=75 Identities=13% Similarity=0.137 Sum_probs=69.0
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL 101 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~ 101 (118)
.++++|||+|||+++|+++|.++|++||.|.++.++.+ ||+|||||.+.++|..|+. +|+..+.|++|.+.
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~---l~g~~~~g~~i~v~ 163 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA---LTGQMLLGRPIIVQ 163 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH---hCCCEECCeeeEEe
Confidence 45789999999999999999999999999999999853 7999999999999999973 88999999999999
Q ss_pred eccc
Q psy9171 102 ISGY 105 (118)
Q Consensus 102 ~S~~ 105 (118)
++..
T Consensus 164 ~~~~ 167 (457)
T TIGR01622 164 SSQA 167 (457)
T ss_pred ecch
Confidence 8764
No 18
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.41 E-value=5e-13 Score=111.70 Aligned_cols=76 Identities=16% Similarity=0.044 Sum_probs=69.1
Q ss_pred CCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec------cCceEEEeecchhhhhcccccccccceeeCCeeeEEEe
Q psy9171 29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK------GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLI 102 (118)
Q Consensus 29 PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~------~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~ 102 (118)
+.+.|||+|||+.+|+++|.++|++||.|..+.+++ .+|+|||||.+.++|..|+.. +|+..+.|++|.|.+
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~--l~g~~~~~~~l~v~~ 371 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAA--LNGKDTGDNKLHVQR 371 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHH--cCCCEECCeEEEEEE
Confidence 457899999999999999999999999999999875 279999999999999999854 899999999999999
Q ss_pred cccc
Q psy9171 103 SGYR 106 (118)
Q Consensus 103 S~~~ 106 (118)
+...
T Consensus 372 a~~~ 375 (509)
T TIGR01642 372 ACVG 375 (509)
T ss_pred CccC
Confidence 8653
No 19
>KOG0125|consensus
Probab=99.41 E-value=3.1e-13 Score=111.57 Aligned_cols=75 Identities=17% Similarity=0.197 Sum_probs=68.1
Q ss_pred CcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec----cCceEEEeecchhhhhcccccccccceeeCCeeeEEEeccc
Q psy9171 30 SRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK----GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGY 105 (118)
Q Consensus 30 S~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~----~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~ 105 (118)
-+-|||+|||....|.||..+|++||+|++|.++. .||++||.|++.++|.+|= -.+++..|.||+|.|+-++-
T Consensus 96 pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRAR--a~LHgt~VEGRkIEVn~ATa 173 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRAR--AELHGTVVEGRKIEVNNATA 173 (376)
T ss_pred CceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHH--HHhhcceeeceEEEEeccch
Confidence 34599999999999999999999999999999984 3899999999999999993 24899999999999998876
Q ss_pred c
Q psy9171 106 R 106 (118)
Q Consensus 106 ~ 106 (118)
+
T Consensus 174 r 174 (376)
T KOG0125|consen 174 R 174 (376)
T ss_pred h
Confidence 4
No 20
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.39 E-value=6.8e-13 Score=113.09 Aligned_cols=78 Identities=13% Similarity=0.107 Sum_probs=70.8
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc-----CceEEEeecchhhhhcccccccccceeeCCeeeEEEe
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG-----KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLI 102 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~-----kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~ 102 (118)
..+..|||+|||+++|+++|.++|++||.|.++.++.+ ||+|||+|.+.++|.+|+.. +|+..+.||+++|.+
T Consensus 283 ~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~--~~g~~~~gk~l~V~~ 360 (562)
T TIGR01628 283 AQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTE--MHGRMLGGKPLYVAL 360 (562)
T ss_pred cCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHH--hcCCeeCCceeEEEe
Confidence 45678999999999999999999999999999999853 69999999999999999854 889999999999999
Q ss_pred ccccc
Q psy9171 103 SGYRN 107 (118)
Q Consensus 103 S~~~~ 107 (118)
+..+.
T Consensus 361 a~~k~ 365 (562)
T TIGR01628 361 AQRKE 365 (562)
T ss_pred ccCcH
Confidence 97643
No 21
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.39 E-value=9e-13 Score=95.90 Aligned_cols=73 Identities=21% Similarity=0.238 Sum_probs=67.5
Q ss_pred CcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEEec
Q psy9171 30 SRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLIS 103 (118)
Q Consensus 30 S~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S 103 (118)
..+|||+|||+++|+++|..+|.+||.|..+.+..+ +|+|||+|.+.++|..|+.. +++..+.||++.|..+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~--~~~~~~~~~~~~v~~~ 192 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEE--LNGKELEGRPLRVQKA 192 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHH--cCCCeECCceeEeecc
Confidence 589999999999999999999999999998888653 69999999999999999865 7899999999999997
Q ss_pred c
Q psy9171 104 G 104 (118)
Q Consensus 104 ~ 104 (118)
.
T Consensus 193 ~ 193 (306)
T COG0724 193 Q 193 (306)
T ss_pred c
Confidence 5
No 22
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.38 E-value=9e-13 Score=115.19 Aligned_cols=76 Identities=18% Similarity=0.173 Sum_probs=69.4
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCC--CceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEeccc
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPF--GRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGY 105 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~f--G~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~ 105 (118)
..+++|||+|||+++||++|.++|++| |.|.++.++ +++|||||++.++|..|+.. +|+..|.|++|.|.+|+-
T Consensus 231 ~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--rgfAFVeF~s~e~A~kAi~~--lnG~~i~Gr~I~V~~Akp 306 (578)
T TIGR01648 231 AKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--RDYAFVHFEDREDAVKAMDE--LNGKELEGSEIEVTLAKP 306 (578)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--cCeEEEEeCCHHHHHHHHHH--hCCCEECCEEEEEEEccC
Confidence 457899999999999999999999999 999999876 57999999999999999854 899999999999999976
Q ss_pred cc
Q psy9171 106 RN 107 (118)
Q Consensus 106 ~~ 107 (118)
..
T Consensus 307 ~~ 308 (578)
T TIGR01648 307 VD 308 (578)
T ss_pred CC
Confidence 43
No 23
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.38 E-value=8.1e-13 Score=112.64 Aligned_cols=71 Identities=23% Similarity=0.178 Sum_probs=65.6
Q ss_pred EEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEEecc
Q psy9171 32 VIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISG 104 (118)
Q Consensus 32 vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~ 104 (118)
.|||+|||+++||++|.++|++||.|.+++++++ +|+|||+|.+.++|..|+.. +|+..++||+++|.+|.
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~--ln~~~i~gk~i~i~~s~ 78 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALET--MNFKRLGGKPIRIMWSQ 78 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHH--hCCCEECCeeEEeeccc
Confidence 5999999999999999999999999999999853 57999999999999999854 78999999999999985
No 24
>KOG0126|consensus
Probab=99.37 E-value=2.7e-13 Score=104.85 Aligned_cols=72 Identities=19% Similarity=0.234 Sum_probs=66.9
Q ss_pred CCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEEe
Q psy9171 29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLI 102 (118)
Q Consensus 29 PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~ 102 (118)
.|--|||+|||++.||+||+.+|++||.|+++.++++ |||||+-++|.-+..-|+.+ +|++.|.||.|+|.-
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN--~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDN--LNGIKILGRTIRVDH 111 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEec--cCCceecceeEEeee
Confidence 3567999999999999999999999999999999964 79999999999999999976 999999999999974
No 25
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.37 E-value=1.1e-12 Score=115.25 Aligned_cols=75 Identities=12% Similarity=0.071 Sum_probs=69.4
Q ss_pred CCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec------cCceEEEeecchhhhhcccccccccceeeCCeeeEEEe
Q psy9171 29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK------GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLI 102 (118)
Q Consensus 29 PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~------~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~ 102 (118)
+...|||+|||+++++++|.++|++||.|.++++.+ .||+|||+|++.++|..|+.. +|+..+.|+.|+|.+
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~a--mNg~elgGr~LrV~k 280 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIAS--MNLFDLGGQYLRVGK 280 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHH--hCCCeeCCeEEEEEe
Confidence 456899999999999999999999999999999985 279999999999999999965 999999999999999
Q ss_pred ccc
Q psy9171 103 SGY 105 (118)
Q Consensus 103 S~~ 105 (118)
+..
T Consensus 281 Ai~ 283 (612)
T TIGR01645 281 CVT 283 (612)
T ss_pred cCC
Confidence 875
No 26
>KOG0109|consensus
Probab=99.37 E-value=5.5e-13 Score=108.89 Aligned_cols=72 Identities=25% Similarity=0.266 Sum_probs=67.9
Q ss_pred EEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEeccccc
Q psy9171 32 VIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGYRN 107 (118)
Q Consensus 32 vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~~~ 107 (118)
.|||+|||.++++++|+.||++||+|+++.++ ||+|||.++++.+|.-||.+ +++.+|+|.+|.|.-|+++|
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv--KNYgFVHiEdktaaedairN--LhgYtLhg~nInVeaSksKs 75 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIV--KNYGFVHIEDKTAAEDAIRN--LHGYTLHGVNINVEASKSKS 75 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeee--cccceEEeecccccHHHHhh--cccceecceEEEEEeccccC
Confidence 39999999999999999999999999999998 58999999999999999966 89999999999999999884
No 27
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.35 E-value=1.9e-12 Score=106.73 Aligned_cols=78 Identities=9% Similarity=0.184 Sum_probs=68.1
Q ss_pred CCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCC--eeeEE
Q psy9171 29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKG--KNQVS 100 (118)
Q Consensus 29 PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~G--r~v~V 100 (118)
.+..|||+|||+++||++|.++|++||.|..+.++++ |++|||||++.++|.+|+.. +|+..+.| +++.|
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~--lng~~~~g~~~~l~V 269 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISA--LNNVIPEGGSQPLTV 269 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHH--hCCCccCCCceeEEE
Confidence 4567999999999999999999999999999999864 48999999999999999965 78887766 68999
Q ss_pred Eeccccch
Q psy9171 101 LISGYRNR 108 (118)
Q Consensus 101 ~~S~~~~~ 108 (118)
.++..+..
T Consensus 270 ~~a~~~~~ 277 (346)
T TIGR01659 270 RLAEEHGK 277 (346)
T ss_pred EECCcccc
Confidence 98876443
No 28
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.35 E-value=3.5e-12 Score=77.66 Aligned_cols=69 Identities=23% Similarity=0.267 Sum_probs=62.4
Q ss_pred EEEeCCCCCcccHHHHHHhccCCCceeEEEEecc-----CceEEEeecchhhhhcccccccccceeeCCeeeEEEe
Q psy9171 32 VIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG-----KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLI 102 (118)
Q Consensus 32 vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~-----kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~ 102 (118)
+|+|+|||+++++++|.++|+.||.|.++.+... ++.|||+|.+.++|..|+.. +++..++|+++.+.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~--~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEA--LNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHH--hCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999864 68999999999999999864 778889999998864
No 29
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.33 E-value=2.7e-12 Score=112.80 Aligned_cols=75 Identities=17% Similarity=0.048 Sum_probs=67.8
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec------cCceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK------GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL 101 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~------~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~ 101 (118)
.....|||+|||+++||++|.++|++||.|.++.++. .||+|||||++.++|..|+.. +|+..+.||+|.|.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~--lnG~~i~GR~IkV~ 182 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQ--MNGQMLGGRNIKVG 182 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHh--cCCeEEecceeeec
Confidence 3456899999999999999999999999999999974 389999999999999999854 89999999999998
Q ss_pred ecc
Q psy9171 102 ISG 104 (118)
Q Consensus 102 ~S~ 104 (118)
.+.
T Consensus 183 rp~ 185 (612)
T TIGR01645 183 RPS 185 (612)
T ss_pred ccc
Confidence 654
No 30
>KOG0114|consensus
Probab=99.33 E-value=3.6e-12 Score=91.26 Aligned_cols=76 Identities=16% Similarity=0.148 Sum_probs=69.4
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec---cCceEEEeecchhhhhcccccccccceeeCCeeeEEEecc
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK---GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISG 104 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~---~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~ 104 (118)
.-+++|||||||.++|.++...||..||.|..+++=. .||-|||.+++..+|..|..+ +++.-+.++.+.+.|=+
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dh--lsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDH--LSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHH--hcccccCCceEEEEecC
Confidence 3489999999999999999999999999999999953 489999999999999999876 88999999999999875
Q ss_pred c
Q psy9171 105 Y 105 (118)
Q Consensus 105 ~ 105 (118)
.
T Consensus 94 ~ 94 (124)
T KOG0114|consen 94 P 94 (124)
T ss_pred H
Confidence 5
No 31
>smart00360 RRM RNA recognition motif.
Probab=99.33 E-value=2.8e-12 Score=77.28 Aligned_cols=64 Identities=25% Similarity=0.296 Sum_probs=57.6
Q ss_pred eCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEE
Q psy9171 35 IRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVS 100 (118)
Q Consensus 35 V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V 100 (118)
|+|||+++++++|.++|++||.|..+.+... +++|||+|.+.++|..|+.. +++..+.|+.+.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~--~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEA--LNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHH--cCCCeeCCcEEEe
Confidence 6899999999999999999999999988764 57999999999999999854 7788899999876
No 32
>KOG0107|consensus
Probab=99.30 E-value=4.7e-12 Score=97.17 Aligned_cols=81 Identities=14% Similarity=0.040 Sum_probs=72.7
Q ss_pred CCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc-CceEEEeecchhhhhcccccccccceeeCCeeeEEEeccc
Q psy9171 27 FKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG-KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGY 105 (118)
Q Consensus 27 ~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~-kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~ 105 (118)
.+-...|||+||+.++|+.||..+|..||++-+|-+... .|+|||||+|..+|.-|+.+ +++..|-|..+.|..|+-
T Consensus 7 ~~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~--LDG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 7 RNGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRY--LDGKDICGSRIRVELSTG 84 (195)
T ss_pred cCCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhh--cCCccccCceEEEEeecC
Confidence 344567999999999999999999999999999988764 69999999999999999865 999999999999999987
Q ss_pred cchH
Q psy9171 106 RNRQ 109 (118)
Q Consensus 106 ~~~~ 109 (118)
+.++
T Consensus 85 ~~r~ 88 (195)
T KOG0107|consen 85 RPRG 88 (195)
T ss_pred Cccc
Confidence 7654
No 33
>KOG0148|consensus
Probab=99.29 E-value=6.8e-12 Score=101.71 Aligned_cols=75 Identities=17% Similarity=0.170 Sum_probs=69.6
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEecc
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISG 104 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~ 104 (118)
+-+-++|++|++..+||+++++.|++||.|.++++.+++|+|||-|++.|+|..||.. +|+.+|.|..|+-..-+
T Consensus 162 p~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~qGYaFVrF~tkEaAahAIv~--mNntei~G~~VkCsWGK 236 (321)
T KOG0148|consen 162 PDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQGYAFVRFETKEAAAHAIVQ--MNNTEIGGQLVRCSWGK 236 (321)
T ss_pred CCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecccceEEEEecchhhHHHHHHH--hcCceeCceEEEEeccc
Confidence 4466799999999999999999999999999999999999999999999999999976 99999999999876654
No 34
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.29 E-value=8.8e-12 Score=99.17 Aligned_cols=71 Identities=7% Similarity=0.065 Sum_probs=65.0
Q ss_pred CcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc---CceEEEeecchhhhhcccccccccceeeCCeeeEEEec
Q psy9171 30 SRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG---KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLIS 103 (118)
Q Consensus 30 S~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~---kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S 103 (118)
..+|||+||++++||.||.++|+.||+|.++.|+.+ +++|||+|.++++|..|+ .+|+..|.|++|.|.-.
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl---lLnGa~l~d~~I~It~~ 78 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV---LLSGATIVDQRVCITRW 78 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH---hcCCCeeCCceEEEEeC
Confidence 468999999999999999999999999999999974 578999999999999997 39999999999988763
No 35
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.28 E-value=7.6e-12 Score=104.58 Aligned_cols=72 Identities=15% Similarity=0.103 Sum_probs=63.9
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCC------------CceeEEEEeccCceEEEeecchhhhhcccccccccceeeCC
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPF------------GRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKG 95 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~f------------G~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~G 95 (118)
.++++|||+|||+++|+++|.++|.+| +.|.++.+.+.+|+|||||.+.++|..|+. +|+..+.|
T Consensus 173 ~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~~kg~afVeF~~~e~A~~Al~---l~g~~~~g 249 (509)
T TIGR01642 173 RQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINKEKNFAFLEFRTVEEATFAMA---LDSIIYSN 249 (509)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECCCCCEEEEEeCCHHHHhhhhc---CCCeEeeC
Confidence 457899999999999999999999864 567777777889999999999999999973 89999999
Q ss_pred eeeEEEe
Q psy9171 96 KNQVSLI 102 (118)
Q Consensus 96 r~v~V~~ 102 (118)
++|.|.-
T Consensus 250 ~~l~v~r 256 (509)
T TIGR01642 250 VFLKIRR 256 (509)
T ss_pred ceeEecC
Confidence 9999864
No 36
>KOG0108|consensus
Probab=99.25 E-value=1.1e-11 Score=105.49 Aligned_cols=78 Identities=15% Similarity=0.122 Sum_probs=72.8
Q ss_pred cEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEEecc
Q psy9171 31 RVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISG 104 (118)
Q Consensus 31 ~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~ 104 (118)
..+||+|+|++++|++|..+|+..|.|.+++++-+ ||+||+||.++++|..|+.. +|+.++.||+++++|+.
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~--lNg~~~~gr~l~v~~~~ 96 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRN--LNGAEFNGRKLRVNYAS 96 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHh--cCCcccCCceEEeeccc
Confidence 78999999999999999999999999999999843 89999999999999999965 99999999999999998
Q ss_pred ccchHH
Q psy9171 105 YRNRQS 110 (118)
Q Consensus 105 ~~~~~~ 110 (118)
.+.+-|
T Consensus 97 ~~~~~~ 102 (435)
T KOG0108|consen 97 NRKNAE 102 (435)
T ss_pred ccchhH
Confidence 877654
No 37
>KOG0111|consensus
Probab=99.25 E-value=3.7e-12 Score=101.34 Aligned_cols=80 Identities=16% Similarity=0.155 Sum_probs=72.2
Q ss_pred CCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec------cCceEEEeecchhhhhcccccccccceeeCCeeeEEEe
Q psy9171 29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK------GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLI 102 (118)
Q Consensus 29 PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~------~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~ 102 (118)
.-|+|||+.|..++||.-|...|.|||.|.++.+.- -||+|||||+..|+|.+||.+ +|..++.||.|+|+|
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDN--MnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDN--MNESELFGRTIRVNL 86 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhc--CchhhhcceeEEEee
Confidence 457999999999999999999999999999998863 389999999999999999976 999999999999999
Q ss_pred ccccchHH
Q psy9171 103 SGYRNRQS 110 (118)
Q Consensus 103 S~~~~~~~ 110 (118)
++--.+.|
T Consensus 87 AkP~kike 94 (298)
T KOG0111|consen 87 AKPEKIKE 94 (298)
T ss_pred cCCccccC
Confidence 98655443
No 38
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.20 E-value=2.9e-11 Score=105.77 Aligned_cols=73 Identities=14% Similarity=0.109 Sum_probs=64.3
Q ss_pred CcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec-----cCceEEEeecchhhhhcccccccccceeeC-CeeeEEEec
Q psy9171 30 SRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK-----GKNQLLLHLEAEIIHLGIPFGRVTNVLVLK-GKNQVSLIS 103 (118)
Q Consensus 30 S~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~-----~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~-Gr~v~V~~S 103 (118)
...|||+|||++++|++|.++|++||.|.+++++. .||+|||+|.+.++|..|+.. +|+..++ ||.+.+..|
T Consensus 58 ~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~--lng~~i~~Gr~l~V~~S 135 (578)
T TIGR01648 58 GCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKL--LNNYEIRPGRLLGVCIS 135 (578)
T ss_pred CCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHH--cCCCeecCCcccccccc
Confidence 35799999999999999999999999999999975 379999999999999999864 8888886 788777666
Q ss_pred c
Q psy9171 104 G 104 (118)
Q Consensus 104 ~ 104 (118)
.
T Consensus 136 ~ 136 (578)
T TIGR01648 136 V 136 (578)
T ss_pred c
Confidence 3
No 39
>KOG0109|consensus
Probab=99.19 E-value=1.7e-11 Score=100.28 Aligned_cols=81 Identities=23% Similarity=0.241 Sum_probs=74.3
Q ss_pred CCCCCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEec
Q psy9171 24 KSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLIS 103 (118)
Q Consensus 24 ~~~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S 103 (118)
++...+|..|||+||.+.+|-+||++.|++||+|.++.++ |+++||.|+-.++|..|+.+ +|+.++.|+++.|+.|
T Consensus 72 ksKsk~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv--kdy~fvh~d~~eda~~air~--l~~~~~~gk~m~vq~s 147 (346)
T KOG0109|consen 72 KSKSKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV--KDYAFVHFDRAEDAVEAIRG--LDNTEFQGKRMHVQLS 147 (346)
T ss_pred cccCCCccccccCCCCccccCHHHhhhhcccCCceeeeee--cceeEEEEeeccchHHHHhc--ccccccccceeeeeee
Confidence 3444789999999999999999999999999999999998 57999999999999999976 9999999999999999
Q ss_pred cccch
Q psy9171 104 GYRNR 108 (118)
Q Consensus 104 ~~~~~ 108 (118)
+++=|
T Consensus 148 tsrlr 152 (346)
T KOG0109|consen 148 TSRLR 152 (346)
T ss_pred ccccc
Confidence 98755
No 40
>KOG0117|consensus
Probab=99.18 E-value=2.5e-11 Score=103.40 Aligned_cols=72 Identities=21% Similarity=0.192 Sum_probs=66.9
Q ss_pred cEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEecccc
Q psy9171 31 RVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGYR 106 (118)
Q Consensus 31 ~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~~ 106 (118)
++||||||+.++||+.|.++|++||.|..|.-+ |.+|||.|.+-++|..|+.. +|+..|.|.+|.+..|+-.
T Consensus 260 KvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~--rDYaFVHf~eR~davkAm~~--~ngkeldG~~iEvtLAKP~ 331 (506)
T KOG0117|consen 260 KVLYVRNLMESTTEETLKKLFNEFGKVERVKKP--RDYAFVHFAEREDAVKAMKE--TNGKELDGSPIEVTLAKPV 331 (506)
T ss_pred eeeeeeccchhhhHHHHHHHHHhccceEEeecc--cceeEEeecchHHHHHHHHH--hcCceecCceEEEEecCCh
Confidence 579999999999999999999999999999877 55999999999999999854 9999999999999999754
No 41
>KOG1456|consensus
Probab=99.16 E-value=3.2e-11 Score=101.52 Aligned_cols=82 Identities=22% Similarity=0.227 Sum_probs=77.1
Q ss_pred CCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEecccc
Q psy9171 27 FKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGYR 106 (118)
Q Consensus 27 ~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~~ 106 (118)
.+||+|+|||+|-..++|.||.+..+.||.|.-+.+++.+.||+|||+|.+.|.+|+.+..-|.+.+.|..-.|+||+++
T Consensus 28 ~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~NyStsq 107 (494)
T KOG1456|consen 28 PNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHKRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNYSTSQ 107 (494)
T ss_pred CCCCceEEEeccccccchhHHHHHHhcCCceEEEEeccccceeeeeeccccchhhheehhccCcccccCchhhcccchhh
Confidence 37899999999999999999999999999999999999999999999999999999887778899999999999999886
Q ss_pred ch
Q psy9171 107 NR 108 (118)
Q Consensus 107 ~~ 108 (118)
.|
T Consensus 108 ~i 109 (494)
T KOG1456|consen 108 CI 109 (494)
T ss_pred hh
Confidence 54
No 42
>KOG0113|consensus
Probab=99.15 E-value=7.7e-11 Score=96.43 Aligned_cols=80 Identities=10% Similarity=0.164 Sum_probs=71.8
Q ss_pred CCCCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeee
Q psy9171 25 SDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQ 98 (118)
Q Consensus 25 ~~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v 98 (118)
.+..|=++|||.-|+++++|.+|...|+.||.|.++.|+.+ ||+|||||+++.+-.+|. +..+++.|+||.|
T Consensus 96 a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AY--K~adG~~Idgrri 173 (335)
T KOG0113|consen 96 AIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAY--KDADGIKIDGRRI 173 (335)
T ss_pred ccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHH--HhccCceecCcEE
Confidence 33468899999999999999999999999999999999864 899999999999999885 4588999999999
Q ss_pred EEEecccc
Q psy9171 99 VSLISGYR 106 (118)
Q Consensus 99 ~V~~S~~~ 106 (118)
.|.|-+-+
T Consensus 174 ~VDvERgR 181 (335)
T KOG0113|consen 174 LVDVERGR 181 (335)
T ss_pred EEEecccc
Confidence 99997654
No 43
>KOG0127|consensus
Probab=99.15 E-value=5.5e-11 Score=103.54 Aligned_cols=81 Identities=12% Similarity=0.122 Sum_probs=73.3
Q ss_pred CCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc-----CceEEEeecchhhhhcccccccccceeeCCeeeEEEec
Q psy9171 29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG-----KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLIS 103 (118)
Q Consensus 29 PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~-----kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S 103 (118)
|-.-|-|||||+.+.+.+|..+|+.||.|..+.+.+. .|+|||.|.+..+|..|+.+ +|+..|.||+|+|.+|
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~--~N~~~i~gR~VAVDWA 193 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEF--FNGNKIDGRPVAVDWA 193 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHh--ccCceecCceeEEeee
Confidence 4567999999999999999999999999999999742 59999999999999999976 9999999999999999
Q ss_pred cccchHHH
Q psy9171 104 GYRNRQSA 111 (118)
Q Consensus 104 ~~~~~~~~ 111 (118)
=..++=|.
T Consensus 194 V~Kd~ye~ 201 (678)
T KOG0127|consen 194 VDKDTYED 201 (678)
T ss_pred cccccccc
Confidence 87776554
No 44
>KOG0105|consensus
Probab=99.15 E-value=6.9e-11 Score=92.09 Aligned_cols=76 Identities=18% Similarity=0.215 Sum_probs=68.5
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc---CceEEEeecchhhhhcccccccccceeeCCeeeEEEecc
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG---KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISG 104 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~---kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~ 104 (118)
..+..|||+|||.++.|.|+..||..||.|..+.|-.. -.+|||||++.-+|.-||++ -++..+.|-+++|.|.+
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiyg--RdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYG--RDGYDYDGCRLRVEFPR 81 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhc--ccccccCcceEEEEecc
Confidence 45678999999999999999999999999999988643 47999999999999999976 77999999999999975
Q ss_pred c
Q psy9171 105 Y 105 (118)
Q Consensus 105 ~ 105 (118)
.
T Consensus 82 g 82 (241)
T KOG0105|consen 82 G 82 (241)
T ss_pred C
Confidence 3
No 45
>KOG0415|consensus
Probab=99.14 E-value=4.5e-11 Score=100.15 Aligned_cols=79 Identities=11% Similarity=0.153 Sum_probs=71.3
Q ss_pred CCCCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeee
Q psy9171 25 SDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQ 98 (118)
Q Consensus 25 ~~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v 98 (118)
...||..||||+.|.+-+|++||..+|+.||+|.++.++++ -.+|||||++.++.++|.+ .++..+|..|+|
T Consensus 234 d~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyF--KMdNvLIDDrRI 311 (479)
T KOG0415|consen 234 DVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYF--KMDNVLIDDRRI 311 (479)
T ss_pred ccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHh--hhcceeeccceE
Confidence 34589999999999999999999999999999999999975 2569999999999999954 488999999999
Q ss_pred EEEeccc
Q psy9171 99 VSLISGY 105 (118)
Q Consensus 99 ~V~~S~~ 105 (118)
-|.||++
T Consensus 312 HVDFSQS 318 (479)
T KOG0415|consen 312 HVDFSQS 318 (479)
T ss_pred Eeehhhh
Confidence 9999943
No 46
>KOG0127|consensus
Probab=99.11 E-value=1.7e-10 Score=100.58 Aligned_cols=85 Identities=21% Similarity=0.318 Sum_probs=71.9
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec------cCceEEEeecchhhhhcccccc----cccceeeCCee
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK------GKNQLLLHLEAEIIHLGIPFGR----VTNVLVLKGKN 97 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~------~kgqAFVEm~~~e~A~~ai~~~----~~n~~~i~Gr~ 97 (118)
.-.++|||||||+++||++|.+.|++||.|..+.++. .+|-|||.|.+..+|.+||... ...++.+.||-
T Consensus 290 ~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~ 369 (678)
T KOG0127|consen 290 TEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRL 369 (678)
T ss_pred cccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccE
Confidence 3458999999999999999999999999999998874 2789999999999999998764 12248999999
Q ss_pred eEEEeccccchHHHHHh
Q psy9171 98 QVSLISGYRNRQSAALM 114 (118)
Q Consensus 98 v~V~~S~~~~~~~~~~~ 114 (118)
+.|.-+= .|-||+.|
T Consensus 370 Lkv~~Av--~RkeA~dm 384 (678)
T KOG0127|consen 370 LKVTLAV--TRKEAADM 384 (678)
T ss_pred Eeeeecc--chHHHHHH
Confidence 9988774 46677765
No 47
>KOG0149|consensus
Probab=99.10 E-value=1.2e-10 Score=92.56 Aligned_cols=69 Identities=10% Similarity=0.132 Sum_probs=59.5
Q ss_pred EEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEEec
Q psy9171 32 VIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLIS 103 (118)
Q Consensus 32 vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S 103 (118)
.|||++|||+++.++|+..|++||.|++..++.+ ||++||.|.|.++|++|... -...|+||+-..+-|
T Consensus 14 KifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d---p~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 14 KIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD---PNPIIDGRKANCNLA 88 (247)
T ss_pred EEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC---CCCcccccccccchh
Confidence 4999999999999999999999999999999853 89999999999999999542 356799996655544
No 48
>KOG0131|consensus
Probab=99.07 E-value=8e-11 Score=90.90 Aligned_cols=74 Identities=18% Similarity=0.148 Sum_probs=68.0
Q ss_pred CCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEEe
Q psy9171 29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLI 102 (118)
Q Consensus 29 PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~ 102 (118)
..-+|||+||++.+|++-|-+||-+-|+|+++.+.++ +|+||+||.++|+|.=|+ +.+|.+.+-||+|+|+-
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAi--kiln~VkLYgrpIrv~k 85 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAI--KILNMVKLYGRPIRVNK 85 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHH--HHHHHHHhcCceeEEEe
Confidence 3558999999999999999999999999999999753 799999999999999997 45999999999999998
Q ss_pred cc
Q psy9171 103 SG 104 (118)
Q Consensus 103 S~ 104 (118)
+.
T Consensus 86 as 87 (203)
T KOG0131|consen 86 AS 87 (203)
T ss_pred cc
Confidence 87
No 49
>KOG0122|consensus
Probab=99.07 E-value=4.2e-10 Score=90.08 Aligned_cols=78 Identities=17% Similarity=0.141 Sum_probs=69.0
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL 101 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~ 101 (118)
.-+.+|-|.|||.+.+|+||.+||.+||.|..+.+.++ ||+|||.|.+.++|.+||.. +|+.=...=-|.+-
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~--LnG~gyd~LILrvE 264 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIAD--LNGYGYDNLILRVE 264 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHH--ccCcccceEEEEEE
Confidence 34567999999999999999999999999999999863 89999999999999999965 88888888888888
Q ss_pred eccccc
Q psy9171 102 ISGYRN 107 (118)
Q Consensus 102 ~S~~~~ 107 (118)
+|+-++
T Consensus 265 wskP~~ 270 (270)
T KOG0122|consen 265 WSKPSN 270 (270)
T ss_pred ecCCCC
Confidence 887653
No 50
>KOG0145|consensus
Probab=99.01 E-value=7.4e-10 Score=90.07 Aligned_cols=75 Identities=20% Similarity=0.137 Sum_probs=69.2
Q ss_pred CcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEEec
Q psy9171 30 SRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLIS 103 (118)
Q Consensus 30 S~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S 103 (118)
.-.|||=||.+|..|.-|-+||.|||.|.||+++++ ||++||.|.+-++|-+|+.. +|+..+.+|.+.|.|-
T Consensus 278 g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~s--LNGy~lg~rvLQVsFK 355 (360)
T KOG0145|consen 278 GWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIAS--LNGYRLGDRVLQVSFK 355 (360)
T ss_pred eeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHH--hcCccccceEEEEEEe
Confidence 346999999999999999999999999999999975 89999999999999999976 9999999999999997
Q ss_pred ccc
Q psy9171 104 GYR 106 (118)
Q Consensus 104 ~~~ 106 (118)
+++
T Consensus 356 tnk 358 (360)
T KOG0145|consen 356 TNK 358 (360)
T ss_pred cCC
Confidence 654
No 51
>KOG0148|consensus
Probab=98.96 E-value=7.5e-10 Score=89.96 Aligned_cols=74 Identities=12% Similarity=0.120 Sum_probs=69.3
Q ss_pred EEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEEeccc
Q psy9171 32 VIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGY 105 (118)
Q Consensus 32 vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~ 105 (118)
-+||+-|.++++-++|++.|.|||.|.+.+++++ ||++||.|.+.++|++||.. +|+.+|.+|.|+-+.|+.
T Consensus 64 hvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~--MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 64 HVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQ--MNGQWLGRRTIRTNWATR 141 (321)
T ss_pred eEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHH--hCCeeeccceeecccccc
Confidence 4889999999999999999999999999999964 89999999999999999976 999999999999999987
Q ss_pred cc
Q psy9171 106 RN 107 (118)
Q Consensus 106 ~~ 107 (118)
+.
T Consensus 142 Kp 143 (321)
T KOG0148|consen 142 KP 143 (321)
T ss_pred Cc
Confidence 65
No 52
>KOG0117|consensus
Probab=98.94 E-value=1.7e-09 Score=92.42 Aligned_cols=90 Identities=13% Similarity=0.072 Sum_probs=73.0
Q ss_pred eeeeccCCCC-CCCCC--CcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhccccc
Q psy9171 15 VVQAKLDRQK-SDFKP--SRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFG 85 (118)
Q Consensus 15 ~~~~~~~~~~-~~~~P--S~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~ 85 (118)
+||+.++.-- +.-+| .--|||+.||.|+.|+||.-||+.-|+|-+++|+.+ ||+|||.|.+.++|..||.
T Consensus 65 qrk~ggPpP~weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik- 143 (506)
T KOG0117|consen 65 QRKYGGPPPGWEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIK- 143 (506)
T ss_pred ccccCCCCCcccCCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHH-
Confidence 6777766321 22122 445999999999999999999999999999999864 9999999999999999995
Q ss_pred ccccceee-CCeeeEEEecccc
Q psy9171 86 RVTNVLVL-KGKNQVSLISGYR 106 (118)
Q Consensus 86 ~~~n~~~i-~Gr~v~V~~S~~~ 106 (118)
.+|..+| .||.|.++-|-..
T Consensus 144 -~lnn~Eir~GK~igvc~Svan 164 (506)
T KOG0117|consen 144 -ELNNYEIRPGKLLGVCVSVAN 164 (506)
T ss_pred -HhhCccccCCCEeEEEEeeec
Confidence 4777776 5899999888543
No 53
>KOG0130|consensus
Probab=98.93 E-value=8.9e-10 Score=82.29 Aligned_cols=72 Identities=19% Similarity=0.125 Sum_probs=65.0
Q ss_pred CcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec------cCceEEEeecchhhhhcccccccccceeeCCeeeEEEec
Q psy9171 30 SRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK------GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLIS 103 (118)
Q Consensus 30 S~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~------~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S 103 (118)
.-+|||.++-++.||+|+...|+.||.|.|+.+-- -||+|+||+++.++|.+|+.. +|+..+.|.+|.|.+.
T Consensus 72 GwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~--~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 72 GWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDA--LNGAELLGQNVSVDWC 149 (170)
T ss_pred eEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHh--ccchhhhCCceeEEEE
Confidence 34699999999999999999999999999998852 289999999999999999965 9999999999988765
No 54
>KOG4207|consensus
Probab=98.90 E-value=1.2e-09 Score=86.27 Aligned_cols=73 Identities=12% Similarity=0.208 Sum_probs=67.4
Q ss_pred EEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEEeccc
Q psy9171 32 VIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGY 105 (118)
Q Consensus 32 vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~ 105 (118)
.|-|=||.+.+|-++|..+|+.||.|.+|.+..+ +|||||-|-+..+|+.|+.. +++..++||.+.|+++++
T Consensus 15 SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~da--mDG~~ldgRelrVq~ary 92 (256)
T KOG4207|consen 15 SLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDA--MDGAVLDGRELRVQMARY 92 (256)
T ss_pred eEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHh--hcceeeccceeeehhhhc
Confidence 5899999999999999999999999999999753 89999999999999999865 889999999999999987
Q ss_pred c
Q psy9171 106 R 106 (118)
Q Consensus 106 ~ 106 (118)
-
T Consensus 93 g 93 (256)
T KOG4207|consen 93 G 93 (256)
T ss_pred C
Confidence 4
No 55
>KOG0123|consensus
Probab=98.81 E-value=4.5e-09 Score=87.67 Aligned_cols=68 Identities=18% Similarity=0.209 Sum_probs=63.5
Q ss_pred EEeCCCCCcccHHHHHHhccCCCceeEEEEecc----CceEEEeecchhhhhcccccccccceeeCCeeeEEEec
Q psy9171 33 IHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG----KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLIS 103 (118)
Q Consensus 33 L~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~----kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S 103 (118)
+||.||+++++..+|...|+.||+|+++++..+ ||+ ||+|+++++|..|+.. +|+..+.|+.+++.-.
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~--~ng~ll~~kki~vg~~ 150 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEK--LNGMLLNGKKIYVGLF 150 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHH--hcCcccCCCeeEEeec
Confidence 999999999999999999999999999999864 888 9999999999999964 9999999999998654
No 56
>KOG0147|consensus
Probab=98.79 E-value=4.1e-09 Score=91.37 Aligned_cols=75 Identities=19% Similarity=0.134 Sum_probs=67.0
Q ss_pred EEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEEecccc
Q psy9171 33 IHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGYR 106 (118)
Q Consensus 33 L~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~~ 106 (118)
|||+||-..+||++|..+|+|||+|.++-+..+ |||+|++|-+.+.|..|... +|++.|-||.|+|.-=+.+
T Consensus 281 l~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~--lngfelAGr~ikV~~v~~r 358 (549)
T KOG0147|consen 281 LYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQ--LNGFELAGRLIKVSVVTER 358 (549)
T ss_pred hhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHH--hccceecCceEEEEEeeee
Confidence 999999999999999999999999999988753 89999999999999999754 9999999999998766554
Q ss_pred chH
Q psy9171 107 NRQ 109 (118)
Q Consensus 107 ~~~ 109 (118)
.-+
T Consensus 359 ~~~ 361 (549)
T KOG0147|consen 359 VDT 361 (549)
T ss_pred ccc
Confidence 433
No 57
>KOG0121|consensus
Probab=98.79 E-value=6.1e-09 Score=77.09 Aligned_cols=72 Identities=11% Similarity=-0.067 Sum_probs=64.8
Q ss_pred CCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEEe
Q psy9171 29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLI 102 (118)
Q Consensus 29 PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~ 102 (118)
.|-+|||+||+.-+||+++-+||+.-|.|..+.|=-+ =|++|||+-+.++|..|+.+ .|+..+..|+|++.+
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~Alry--isgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRY--ISGTRLDDRPIRIDW 112 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHH--hccCcccccceeeec
Confidence 4558999999999999999999999999999988422 38999999999999999965 899999999999875
No 58
>KOG0110|consensus
Probab=98.78 E-value=7e-09 Score=92.11 Aligned_cols=70 Identities=17% Similarity=0.104 Sum_probs=65.1
Q ss_pred EEeCCCCCcccHHHHHHhccCCCceeEEEEeccC---------ceEEEeecchhhhhcccccccccceeeCCeeeEEEec
Q psy9171 33 IHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGK---------NQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLIS 103 (118)
Q Consensus 33 L~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~k---------gqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S 103 (118)
||+.||++++|.++|..+|...|.|..+.|.+.+ |+|||||.+.++|..|+.. +++..++|+.+.+.+|
T Consensus 518 lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~--lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 518 LFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKA--LQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHH--hcCceecCceEEEEec
Confidence 9999999999999999999999999999887532 9999999999999999754 8899999999999999
Q ss_pred c
Q psy9171 104 G 104 (118)
Q Consensus 104 ~ 104 (118)
-
T Consensus 596 ~ 596 (725)
T KOG0110|consen 596 E 596 (725)
T ss_pred c
Confidence 7
No 59
>KOG0116|consensus
Probab=98.77 E-value=1.2e-08 Score=86.77 Aligned_cols=77 Identities=18% Similarity=0.131 Sum_probs=66.0
Q ss_pred CcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec----cC--ceEEEeecchhhhhcccccccccceeeCCeeeEEEec
Q psy9171 30 SRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK----GK--NQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLIS 103 (118)
Q Consensus 30 S~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~----~k--gqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S 103 (118)
...|||+|||.++++.+|.+.|.+||.|....+.. ++ ++|||+|++.+++..++. +++..+.||++.|-.=
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~---Asp~~ig~~kl~Veek 364 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIE---ASPLEIGGRKLNVEEK 364 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhh---cCccccCCeeEEEEec
Confidence 34499999999999999999999999999887753 23 899999999999999975 5599999999999876
Q ss_pred cccchH
Q psy9171 104 GYRNRQ 109 (118)
Q Consensus 104 ~~~~~~ 109 (118)
+..+++
T Consensus 365 ~~~~~g 370 (419)
T KOG0116|consen 365 RPGFRG 370 (419)
T ss_pred cccccc
Confidence 655443
No 60
>KOG0153|consensus
Probab=98.77 E-value=1.4e-08 Score=84.49 Aligned_cols=76 Identities=16% Similarity=0.155 Sum_probs=70.5
Q ss_pred CCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEeccc
Q psy9171 29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGY 105 (118)
Q Consensus 29 PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~ 105 (118)
..++|||++|-++++|.||+..|.+||.+..++++..++=|||+|.+-++|+.|.. ...|-+.|+|++|.|..++.
T Consensus 227 ~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~~CAFv~ftTR~aAE~Aae-~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 227 SIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRKGCAFVTFTTREAAEKAAE-KSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred ceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecccccceeeehhhHHHHHHHH-hhcceeeecceEEEEEeCCC
Confidence 36789999999999999999999999999999999999999999999999999954 55789999999999998876
No 61
>KOG0132|consensus
Probab=98.77 E-value=1e-08 Score=92.04 Aligned_cols=77 Identities=14% Similarity=0.159 Sum_probs=70.3
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEecccc
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGYR 106 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~~ 106 (118)
.-|+||+|+.||-.++|.||..+|++||.|.++.++..|+-|||.|..-.+|..|+.. ++...+.++.|++.++...
T Consensus 419 V~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R~cAfI~M~~RqdA~kalqk--l~n~kv~~k~Iki~Wa~g~ 495 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPRGCAFIKMVRRQDAEKALQK--LSNVKVADKTIKIAWAVGK 495 (894)
T ss_pred EeeeeeeeccccchhhHHHHHHHHHhcccceeEeeccCCceeEEEEeehhHHHHHHHH--HhcccccceeeEEeeeccC
Confidence 3499999999999999999999999999999999999999999999999999999754 6688899999998887543
No 62
>KOG0124|consensus
Probab=98.77 E-value=3.4e-09 Score=89.46 Aligned_cols=68 Identities=21% Similarity=0.126 Sum_probs=63.2
Q ss_pred EEEeCCCCCcccHHHHHHhccCCCceeEEEEe------ccCceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171 32 VIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVL------KGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL 101 (118)
Q Consensus 32 vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~------~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~ 101 (118)
-+||+.+.+++.|+.|+..|.|||+|.++.|- +.||+||||++-+|.|.-|+.. +|+..+.||++.|.
T Consensus 115 RvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEq--MNg~mlGGRNiKVg 188 (544)
T KOG0124|consen 115 RVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQ--MNGQMLGGRNIKVG 188 (544)
T ss_pred heeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHH--hccccccCcccccc
Confidence 38999999999999999999999999999994 2489999999999999999865 99999999999997
No 63
>smart00361 RRM_1 RNA recognition motif.
Probab=98.75 E-value=1.4e-08 Score=65.24 Aligned_cols=55 Identities=11% Similarity=0.102 Sum_probs=46.4
Q ss_pred HHHHHHhcc----CCCceeEEE--Eec-------cCceEEEeecchhhhhcccccccccceeeCCeeeEE
Q psy9171 44 EAEIIHLGI----PFGRVTNVL--VLK-------GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVS 100 (118)
Q Consensus 44 e~dL~~Lf~----~fG~V~~v~--l~~-------~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V 100 (118)
++||.++|+ +||.|.++. .+. .||+|||+|++.++|..|+.. +|+..+.||+|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~--l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVD--LNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHH--hCCCEECCEEEEe
Confidence 567777777 999999985 332 279999999999999999865 9999999999865
No 64
>KOG4208|consensus
Probab=98.69 E-value=3.3e-08 Score=77.37 Aligned_cols=75 Identities=20% Similarity=0.197 Sum_probs=65.9
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCC-CceeEEEEec------cCceEEEeecchhhhhcccccccccceeeCCeeeEE
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPF-GRVTNVLVLK------GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVS 100 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~f-G~V~~v~l~~------~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V 100 (118)
.+.-++++..+|...-|.++...|.+| |.|..+++.+ .||+|||||++++.|.-|... +|..++.|+-+..
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAET--MNNYLl~e~lL~c 124 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAET--MNNYLLMEHLLEC 124 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHH--hhhhhhhhheeee
Confidence 556789999999999999999999999 7888888853 389999999999999988654 9999999999988
Q ss_pred Eecc
Q psy9171 101 LISG 104 (118)
Q Consensus 101 ~~S~ 104 (118)
.|.-
T Consensus 125 ~vmp 128 (214)
T KOG4208|consen 125 HVMP 128 (214)
T ss_pred EEeC
Confidence 8764
No 65
>KOG0110|consensus
Probab=98.69 E-value=1.4e-08 Score=90.16 Aligned_cols=77 Identities=22% Similarity=0.166 Sum_probs=69.5
Q ss_pred CcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEEec
Q psy9171 30 SRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLIS 103 (118)
Q Consensus 30 S~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S 103 (118)
...|+|||||...|..+++.||++||.+..+++.+. ||+|||+|-+..+|.+|..+ +...-+-||++++.+|
T Consensus 613 ~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~a--l~STHlyGRrLVLEwA 690 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDA--LGSTHLYGRRLVLEWA 690 (725)
T ss_pred cceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHh--hcccceechhhheehh
Confidence 346999999999999999999999999999999853 89999999999999999765 5588999999999999
Q ss_pred cccch
Q psy9171 104 GYRNR 108 (118)
Q Consensus 104 ~~~~~ 108 (118)
..-+-
T Consensus 691 ~~d~~ 695 (725)
T KOG0110|consen 691 KSDNT 695 (725)
T ss_pred ccchH
Confidence 88654
No 66
>KOG0145|consensus
Probab=98.66 E-value=6.7e-08 Score=78.79 Aligned_cols=77 Identities=14% Similarity=0.101 Sum_probs=69.9
Q ss_pred CcE-EEeCCCCCcccHHHHHHhccCCCceeEEEEeccC------ceEEEeecchhhhhcccccccccceeeCCeeeEEEe
Q psy9171 30 SRV-IHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGK------NQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLI 102 (118)
Q Consensus 30 S~v-L~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~k------gqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~ 102 (118)
|++ |.|.=||...|++|+++||...|.|.+++++++| |++||-+-++++|++|+. .+|++.+..|.|+|.|
T Consensus 40 skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~Ain--tlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 40 SKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAIN--TLNGLRLQNKTIKVSY 117 (360)
T ss_pred ccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHh--hhcceeeccceEEEEe
Confidence 454 8888899999999999999999999999999763 679999999999999985 4999999999999999
Q ss_pred ccccch
Q psy9171 103 SGYRNR 108 (118)
Q Consensus 103 S~~~~~ 108 (118)
++-+|-
T Consensus 118 ARPSs~ 123 (360)
T KOG0145|consen 118 ARPSSD 123 (360)
T ss_pred ccCChh
Confidence 998764
No 67
>KOG4206|consensus
Probab=98.66 E-value=5.2e-08 Score=76.77 Aligned_cols=76 Identities=9% Similarity=0.124 Sum_probs=68.7
Q ss_pred CCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec-cCceEEEeecchhhhhcccccccccceeeC-CeeeEEEecc
Q psy9171 27 FKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK-GKNQLLLHLEAEIIHLGIPFGRVTNVLVLK-GKNQVSLISG 104 (118)
Q Consensus 27 ~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~-~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~-Gr~v~V~~S~ 104 (118)
.+|+.+|++.|||.+++.+.|..+|++|+....++++. .++.|||||+++..|..|... +.+..|. +..+.|.||+
T Consensus 143 ~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~~~iAfve~~~d~~a~~a~~~--lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPRSGIAFVEFLSDRQASAAQQA--LQGFKITKKNTMQITFAK 220 (221)
T ss_pred CCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCCCceeEEecchhhhhHHHhhh--hccceeccCceEEecccC
Confidence 58999999999999999999999999999999999998 579999999999999998755 6677887 7788888875
No 68
>KOG0144|consensus
Probab=98.66 E-value=1.5e-08 Score=86.50 Aligned_cols=78 Identities=13% Similarity=0.241 Sum_probs=69.6
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc-----CceEEEeecchhhhhccccccccc-ceeeCCe--eeE
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG-----KNQLLLHLEAEIIHLGIPFGRVTN-VLVLKGK--NQV 99 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~-----kgqAFVEm~~~e~A~~ai~~~~~n-~~~i~Gr--~v~ 99 (118)
+-.+.|||+-|+..+||.|++++|++||.|.++.++++ ||-|||.|.+.|-|..||+. +| ..+++|- |+.
T Consensus 122 ~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika--~ng~~tmeGcs~PLV 199 (510)
T KOG0144|consen 122 VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKA--LNGTQTMEGCSQPLV 199 (510)
T ss_pred ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHh--hccceeeccCCCceE
Confidence 55788999999999999999999999999999999974 89999999999999999976 77 4567876 899
Q ss_pred EEeccccc
Q psy9171 100 SLISGYRN 107 (118)
Q Consensus 100 V~~S~~~~ 107 (118)
|.|+..+.
T Consensus 200 VkFADtqk 207 (510)
T KOG0144|consen 200 VKFADTQK 207 (510)
T ss_pred EEecccCC
Confidence 99997654
No 69
>KOG0123|consensus
Probab=98.46 E-value=1e-07 Score=79.57 Aligned_cols=75 Identities=12% Similarity=0.141 Sum_probs=68.6
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc-----CceEEEeecchhhhhcccccccccceeeCCeeeEEEe
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG-----KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLI 102 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~-----kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~ 102 (118)
.+...|||.|++..++++.|..+|+.||.|.+.+++.+ +|++||+|++.++|+.|+. ..|+..+.|+++++..
T Consensus 268 ~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~~g~skG~gfV~fs~~eeA~~A~~--~~n~~~i~~k~l~vav 345 (369)
T KOG0123|consen 268 LQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDENGKSKGFGFVEFSSPEEAKKAMT--EMNGRLIGGKPLYVAV 345 (369)
T ss_pred ccccccccccCccccchhHHHHHHhcccceeeEEEEeccCCCccceEEEEcCCHHHHHHHHH--hhChhhhcCCchhhhH
Confidence 66778999999999999999999999999999988753 8999999999999999975 4999999999999887
Q ss_pred cc
Q psy9171 103 SG 104 (118)
Q Consensus 103 S~ 104 (118)
..
T Consensus 346 ~q 347 (369)
T KOG0123|consen 346 AQ 347 (369)
T ss_pred Hh
Confidence 75
No 70
>KOG0146|consensus
Probab=98.45 E-value=8.2e-08 Score=78.54 Aligned_cols=75 Identities=17% Similarity=0.232 Sum_probs=67.1
Q ss_pred cEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEEecc
Q psy9171 31 RVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISG 104 (118)
Q Consensus 31 ~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~ 104 (118)
-.|||-.||.+..+.||.+.|.|||.|.+.++..+ |.++||.|++..+|.+||.. +|+..|.=|+++|+.-+
T Consensus 286 CNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqA--MNGFQIGMKRLKVQLKR 363 (371)
T KOG0146|consen 286 CNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQA--MNGFQIGMKRLKVQLKR 363 (371)
T ss_pred ceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHH--hcchhhhhhhhhhhhcC
Confidence 37999999999999999999999999999888743 78899999999999999976 99999999999988766
Q ss_pred ccc
Q psy9171 105 YRN 107 (118)
Q Consensus 105 ~~~ 107 (118)
-++
T Consensus 364 Pkd 366 (371)
T KOG0146|consen 364 PKD 366 (371)
T ss_pred ccc
Confidence 543
No 71
>KOG4660|consensus
Probab=98.34 E-value=1.3e-07 Score=82.20 Aligned_cols=74 Identities=9% Similarity=0.085 Sum_probs=67.5
Q ss_pred CCCCCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec-cCceEEEeecchhhhhcccccccccceeeCCeeeE
Q psy9171 24 KSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK-GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQV 99 (118)
Q Consensus 24 ~~~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~-~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~ 99 (118)
.++..|.++|.|-|||..+++++|..+|+.||.|..+++-+ .+++.||||=|.-+|++|++. +|+..+.|+++.
T Consensus 69 ~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~--l~~~~~~~~~~k 143 (549)
T KOG4660|consen 69 SEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKA--LNRREIAGKRIK 143 (549)
T ss_pred CcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHH--HHHHHhhhhhhc
Confidence 35557899999999999999999999999999999998876 479999999999999999855 999999999987
No 72
>KOG0106|consensus
Probab=98.30 E-value=8.3e-07 Score=69.84 Aligned_cols=69 Identities=12% Similarity=0.065 Sum_probs=62.5
Q ss_pred EEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEecc
Q psy9171 32 VIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISG 104 (118)
Q Consensus 32 vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~ 104 (118)
-+||++||+.+.+.||..+|..||.+-++.|.. +++||||+|.-+|.-|+ +.+|+..+.|-.+.+.+++
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--gf~fv~fed~rda~Dav--~~l~~~~l~~e~~vve~~r 71 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMKN--GFGFVEFEDPRDADDAV--HDLDGKELCGERLVVEHAR 71 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceeec--ccceeccCchhhhhccc--chhcCceecceeeeeeccc
Confidence 489999999999999999999999999999875 56799999999999998 4588999988888888876
No 73
>KOG0124|consensus
Probab=98.28 E-value=8.8e-07 Score=75.09 Aligned_cols=69 Identities=13% Similarity=0.126 Sum_probs=62.2
Q ss_pred EEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEEe
Q psy9171 32 VIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLI 102 (118)
Q Consensus 32 vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~ 102 (118)
-|||..+-+|.+|+||.++|+.||+|..+.+.++ ||++|+||.+..+-..|+.+ +|-..+.|.=++|--
T Consensus 212 RiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAias--MNlFDLGGQyLRVGk 286 (544)
T KOG0124|consen 212 RIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIAS--MNLFDLGGQYLRVGK 286 (544)
T ss_pred eEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhh--cchhhcccceEeccc
Confidence 4999999999999999999999999999999753 89999999999999999876 899999998777653
No 74
>KOG0144|consensus
Probab=98.27 E-value=8.4e-07 Score=75.98 Aligned_cols=80 Identities=19% Similarity=0.175 Sum_probs=71.5
Q ss_pred CCCCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeee
Q psy9171 25 SDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQ 98 (118)
Q Consensus 25 ~~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v 98 (118)
+. +-...|||.+||.+.-+.||...|.+||.|+...+.-+ |.++||.+|+..+|.+||.. +|+..|.+|++
T Consensus 420 eG-peGanlfiyhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~a--mngfQig~Krl 496 (510)
T KOG0144|consen 420 EG-PEGANLFIYHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISA--MNGFQIGSKRL 496 (510)
T ss_pred cC-CCccceeeeeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHH--hcchhhccccc
Confidence 44 66778999999999999999999999999998877632 78999999999999999855 99999999999
Q ss_pred EEEeccccc
Q psy9171 99 VSLISGYRN 107 (118)
Q Consensus 99 ~V~~S~~~~ 107 (118)
+|+-++.++
T Consensus 497 kVQlk~~~~ 505 (510)
T KOG0144|consen 497 KVQLKRDRN 505 (510)
T ss_pred eEEeeeccC
Confidence 999988765
No 75
>KOG4661|consensus
Probab=98.23 E-value=1e-06 Score=78.01 Aligned_cols=76 Identities=9% Similarity=0.072 Sum_probs=68.2
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL 101 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~ 101 (118)
.-++.|.|..|...+.-.||..||+.||+|+-..++++ +.++||.|.+.++|+.||.+ ++...+.||-|-|.
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~h--LHrTELHGrmISVE 480 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEH--LHRTELHGRMISVE 480 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHH--hhhhhhcceeeeee
Confidence 44789999999999999999999999999998888753 89999999999999999977 88999999999887
Q ss_pred eccc
Q psy9171 102 ISGY 105 (118)
Q Consensus 102 ~S~~ 105 (118)
-+++
T Consensus 481 kaKN 484 (940)
T KOG4661|consen 481 KAKN 484 (940)
T ss_pred eccc
Confidence 7654
No 76
>KOG4205|consensus
Probab=98.23 E-value=1.5e-06 Score=71.45 Aligned_cols=78 Identities=18% Similarity=0.165 Sum_probs=65.4
Q ss_pred CcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEEec
Q psy9171 30 SRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLIS 103 (118)
Q Consensus 30 S~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S 103 (118)
+..|||++|+|++|++.|+.-|++||.|.++.++++ |+++||+|++++.-..++. .....|.||.|..--+
T Consensus 6 ~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~---~~~h~~dgr~ve~k~a 82 (311)
T KOG4205|consen 6 SGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN---ARTHKLDGRSVEPKRA 82 (311)
T ss_pred CcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec---ccccccCCccccceec
Confidence 446999999999999999999999999999999863 7999999998888777753 3467899999888777
Q ss_pred cccchHH
Q psy9171 104 GYRNRQS 110 (118)
Q Consensus 104 ~~~~~~~ 110 (118)
-.+-.|+
T Consensus 83 v~r~~~~ 89 (311)
T KOG4205|consen 83 VSREDQT 89 (311)
T ss_pred cCccccc
Confidence 6655443
No 77
>KOG4205|consensus
Probab=98.22 E-value=2.7e-06 Score=69.95 Aligned_cols=74 Identities=15% Similarity=0.208 Sum_probs=63.9
Q ss_pred CCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec------cCceEEEeecchhhhhcccccccccceeeCCeeeEEEe
Q psy9171 29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK------GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLI 102 (118)
Q Consensus 29 PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~------~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~ 102 (118)
+++.+||+.||++++|.++.+.|.+||+|..+.++. .|+++||.++++++...+.. .....+.|+.+.+.=
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~---~~f~~~~gk~vevkr 172 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL---QKFHDFNGKKVEVKR 172 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc---cceeeecCceeeEee
Confidence 467899999999999999999999999998887763 38999999999999988843 557889999998876
Q ss_pred ccc
Q psy9171 103 SGY 105 (118)
Q Consensus 103 S~~ 105 (118)
|.-
T Consensus 173 A~p 175 (311)
T KOG4205|consen 173 AIP 175 (311)
T ss_pred ccc
Confidence 644
No 78
>KOG0533|consensus
Probab=98.21 E-value=1.9e-06 Score=68.77 Aligned_cols=77 Identities=17% Similarity=0.137 Sum_probs=66.7
Q ss_pred cEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc-----CceEEEeecchhhhhcccccccccceeeCCeeeEEEeccc
Q psy9171 31 RVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG-----KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGY 105 (118)
Q Consensus 31 ~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~-----kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~ 105 (118)
-.|+|.|||+.+++.||.+||..||.+..+.+-.+ .|.|-|.|+.-++|.+++.- .|++.+.|+++.+.-...
T Consensus 84 ~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~--~~gv~ldG~~mk~~~i~~ 161 (243)
T KOG0533|consen 84 TKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKK--YNGVALDGRPMKIEIISS 161 (243)
T ss_pred ceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHH--hcCcccCCceeeeEEecC
Confidence 45999999999999999999999998888877532 58999999999999999865 668999999999998876
Q ss_pred cchH
Q psy9171 106 RNRQ 109 (118)
Q Consensus 106 ~~~~ 109 (118)
.+..
T Consensus 162 ~~~~ 165 (243)
T KOG0533|consen 162 PSQS 165 (243)
T ss_pred cccc
Confidence 5544
No 79
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.11 E-value=3.7e-06 Score=59.00 Aligned_cols=70 Identities=14% Similarity=0.129 Sum_probs=47.3
Q ss_pred EEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhccccccccc---ceeeCCeeeEEE
Q psy9171 32 VIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTN---VLVLKGKNQVSL 101 (118)
Q Consensus 32 vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n---~~~i~Gr~v~V~ 101 (118)
+|+|.+++.+++.++|.++|++||.|.-|.+.++-..|+|-|.+.++|..|+...... ++.|.|..+.+.
T Consensus 3 il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 3 ILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred EEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 7999999999999999999999999999999998899999999999999987655444 677888776554
No 80
>KOG0131|consensus
Probab=98.09 E-value=3.5e-06 Score=65.39 Aligned_cols=78 Identities=12% Similarity=0.014 Sum_probs=67.0
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEE-Eec------cCceEEEeecchhhhhcccccccccceeeCCeeeEE
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVL-VLK------GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVS 100 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~-l~~------~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V 100 (118)
..+-.|||+||.+++.|..|..+|+.||.+...- +++ .+++||+-+++.|++.+|+.. +|+..+..|++.+
T Consensus 94 ~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s--~ngq~l~nr~itv 171 (203)
T KOG0131|consen 94 DVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGS--MNGQYLCNRPITV 171 (203)
T ss_pred cccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHH--hccchhcCCceEE
Confidence 5567899999999999999999999999987632 221 378999999999999999876 8999999999999
Q ss_pred Eeccccc
Q psy9171 101 LISGYRN 107 (118)
Q Consensus 101 ~~S~~~~ 107 (118)
.|+...+
T Consensus 172 ~ya~k~~ 178 (203)
T KOG0131|consen 172 SYAFKKD 178 (203)
T ss_pred EEEEecC
Confidence 9986544
No 81
>KOG4212|consensus
Probab=98.08 E-value=3.2e-06 Score=72.93 Aligned_cols=70 Identities=20% Similarity=0.099 Sum_probs=62.5
Q ss_pred EEEeCCCCCcccHHHHHHhccCCCceeEEEEe-ccCceEEEeecchhhhhcccccccccceeeCCeeeEEEec
Q psy9171 32 VIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVL-KGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLIS 103 (118)
Q Consensus 32 vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~-~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S 103 (118)
.|+|||||.++|=+.|+.-|-+||.|....++ +++.-+.|-|.++++|+.|.. .+|+..+.||.|.|.|.
T Consensus 538 qIiirNlP~dfTWqmlrDKfre~G~v~yadime~GkskGVVrF~s~edAEra~a--~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 538 QIIIRNLPFDFTWQMLRDKFREIGHVLYADIMENGKSKGVVRFFSPEDAERACA--LMNGSRLDGRNIKVTYF 608 (608)
T ss_pred EEEEecCCccccHHHHHHHHHhccceehhhhhccCCccceEEecCHHHHHHHHH--HhccCcccCceeeeeeC
Confidence 69999999999999999999999999888776 356666999999999999975 48999999999999873
No 82
>KOG1456|consensus
Probab=98.07 E-value=9.2e-06 Score=68.97 Aligned_cols=81 Identities=15% Similarity=0.127 Sum_probs=72.4
Q ss_pred CCCCCCcEEEeCCCCC-cccHHHHHHhccCCCceeEEEEeccC-ceEEEeecchhhhhcccccccccceeeCCeeeEEEe
Q psy9171 25 SDFKPSRVIHIRNIPN-EVTEAEIIHLGIPFGRVTNVLVLKGK-NQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLI 102 (118)
Q Consensus 25 ~~~~PS~vL~V~NLP~-~vte~dL~~Lf~~fG~V~~v~l~~~k-gqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~ 102 (118)
....|+.|+-|-.|.. ...-+.|..||+.||+|..+..++.| |-|.|||.|..+-++|+.+ +|...+.|.++.|.+
T Consensus 282 ~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~gtamVemgd~~aver~v~h--Lnn~~lfG~kl~v~~ 359 (494)
T KOG1456|consen 282 GGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPGTAMVEMGDAYAVERAVTH--LNNIPLFGGKLNVCV 359 (494)
T ss_pred CCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccceeEEEcCcHHHHHHHHHH--hccCccccceEEEee
Confidence 5668899999999998 46677889999999999999999865 8899999999999999977 889999999999999
Q ss_pred ccccc
Q psy9171 103 SGYRN 107 (118)
Q Consensus 103 S~~~~ 107 (118)
|+.-.
T Consensus 360 SkQ~~ 364 (494)
T KOG1456|consen 360 SKQNF 364 (494)
T ss_pred ccccc
Confidence 97643
No 83
>KOG0151|consensus
Probab=98.01 E-value=8.3e-06 Score=73.38 Aligned_cols=82 Identities=10% Similarity=0.008 Sum_probs=70.5
Q ss_pred CC-CcEEEeCCCCCcccHHHHHHhccCCCceeEEEEe-c--------cCceEEEeecchhhhhcccccccccceeeCCee
Q psy9171 28 KP-SRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVL-K--------GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKN 97 (118)
Q Consensus 28 ~P-S~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~-~--------~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~ 97 (118)
.| ...||++||++.++|+.|...|..||+|..++++ + .++-+||-|.+-.+|.+|+.. +++..+.+..
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~--lqg~iv~~~e 248 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKE--LQGIIVMEYE 248 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHH--hcceeeeeee
Confidence 44 4569999999999999999999999999999887 2 267799999999999999864 8999999999
Q ss_pred eEEEeccccchHHH
Q psy9171 98 QVSLISGYRNRQSA 111 (118)
Q Consensus 98 v~V~~S~~~~~~~~ 111 (118)
+++.+++.=.+..+
T Consensus 249 ~K~gWgk~V~ip~~ 262 (877)
T KOG0151|consen 249 MKLGWGKAVPIPNI 262 (877)
T ss_pred eeeccccccccCCc
Confidence 99999976544433
No 84
>KOG1457|consensus
Probab=97.95 E-value=4.1e-06 Score=67.09 Aligned_cols=58 Identities=14% Similarity=0.040 Sum_probs=50.3
Q ss_pred CcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec--cCceEEEeecchhhhhccccccc
Q psy9171 30 SRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK--GKNQLLLHLEAEIIHLGIPFGRV 87 (118)
Q Consensus 30 S~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~--~kgqAFVEm~~~e~A~~ai~~~~ 87 (118)
..+|||-||.++|||++|+.+|+.|..+..+++-. +..-||++|++.+.|+.|+.+.+
T Consensus 210 cstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lq 269 (284)
T KOG1457|consen 210 CSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQ 269 (284)
T ss_pred hhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhh
Confidence 45899999999999999999999999988887754 34569999999999999986643
No 85
>KOG4212|consensus
Probab=97.94 E-value=1.5e-05 Score=68.88 Aligned_cols=75 Identities=17% Similarity=0.120 Sum_probs=65.7
Q ss_pred CCcEEEeCCCCCcccHHHHHHhc-cCCCceeEEEEec-----cCceEEEeecchhhhhcccccccccceeeCCeeeEEEe
Q psy9171 29 PSRVIHIRNIPNEVTEAEIIHLG-IPFGRVTNVLVLK-----GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLI 102 (118)
Q Consensus 29 PS~vL~V~NLP~~vte~dL~~Lf-~~fG~V~~v~l~~-----~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~ 102 (118)
-.|.+||.|||+|+.=+||..|+ +.-|.|.-|.++. .|+-|.|||.++|.+++|+.- +|-..+.||++.+.+
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~--lnk~~~~GR~l~vKE 120 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEK--LNKYEVNGRELVVKE 120 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHH--hhhccccCceEEEec
Confidence 35679999999999999999998 5579999998884 378999999999999999864 899999999999977
Q ss_pred ccc
Q psy9171 103 SGY 105 (118)
Q Consensus 103 S~~ 105 (118)
-.-
T Consensus 121 d~d 123 (608)
T KOG4212|consen 121 DHD 123 (608)
T ss_pred cCc
Confidence 543
No 86
>KOG4454|consensus
Probab=97.92 E-value=2.7e-06 Score=67.83 Aligned_cols=75 Identities=17% Similarity=0.102 Sum_probs=65.4
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccC----ceEEEeecchhhhhcccccccccceeeCCeeeEEEec
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGK----NQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLIS 103 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~k----gqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S 103 (118)
+-.++|||.|+-.+++|+-|.+||.+-|+|.+|.+-.++ .+|||+|+++-+-.-|+. .+|+..+.|+++.+.+-
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~--L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQ--LENGDDLEEDEEQRTLR 84 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhh--hcccchhccchhhcccc
Confidence 447899999999999999999999999999999997542 379999999999888874 48999999999888764
Q ss_pred c
Q psy9171 104 G 104 (118)
Q Consensus 104 ~ 104 (118)
.
T Consensus 85 ~ 85 (267)
T KOG4454|consen 85 C 85 (267)
T ss_pred c
Confidence 3
No 87
>KOG4209|consensus
Probab=97.85 E-value=1.7e-05 Score=62.71 Aligned_cols=75 Identities=13% Similarity=-0.004 Sum_probs=65.3
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL 101 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~ 101 (118)
.+.+.+|++|+...+|-+++...|+.+|.+..+.+..+ ||+||+||.+.+.+..++ .+|+..|.|+.+.+.
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay---~l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAY---KLDGSEIPGPAIEVT 175 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHh---hcCCcccccccceee
Confidence 56788999999999999999999999999987777642 789999999999999995 489999999999887
Q ss_pred eccc
Q psy9171 102 ISGY 105 (118)
Q Consensus 102 ~S~~ 105 (118)
.-+.
T Consensus 176 ~~r~ 179 (231)
T KOG4209|consen 176 LKRT 179 (231)
T ss_pred eeee
Confidence 6543
No 88
>KOG1548|consensus
Probab=97.84 E-value=2.4e-05 Score=65.49 Aligned_cols=77 Identities=13% Similarity=0.099 Sum_probs=65.0
Q ss_pred CcEEEeCCCCCcccHHHHHHhccCCCcee--------EEEEecc-----CceEEEeecchhhhhcccccccccceeeCCe
Q psy9171 30 SRVIHIRNIPNEVTEAEIIHLGIPFGRVT--------NVLVLKG-----KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGK 96 (118)
Q Consensus 30 S~vL~V~NLP~~vte~dL~~Lf~~fG~V~--------~v~l~~~-----kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr 96 (118)
+..|||+|||.++|-++..++|+.+|.|. .+.+-.. ||-|++.+--.++-.-|+. .++...++|+
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~--ilDe~~~rg~ 211 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIK--ILDEDELRGK 211 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHH--HhCcccccCc
Confidence 55699999999999999999999999984 2444432 8999999988888888874 3889999999
Q ss_pred eeEEEeccccch
Q psy9171 97 NQVSLISGYRNR 108 (118)
Q Consensus 97 ~v~V~~S~~~~~ 108 (118)
.|.|.-|+.+..
T Consensus 212 ~~rVerAkfq~K 223 (382)
T KOG1548|consen 212 KLRVERAKFQMK 223 (382)
T ss_pred EEEEehhhhhhc
Confidence 999999987654
No 89
>KOG0146|consensus
Probab=97.84 E-value=2.4e-05 Score=64.24 Aligned_cols=76 Identities=16% Similarity=0.241 Sum_probs=64.1
Q ss_pred CCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc-----CceEEEeecchhhhhcccccccccc-eeeCCe--eeEE
Q psy9171 29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG-----KNQLLLHLEAEIIHLGIPFGRVTNV-LVLKGK--NQVS 100 (118)
Q Consensus 29 PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~-----kgqAFVEm~~~e~A~~ai~~~~~n~-~~i~Gr--~v~V 100 (118)
-.|.|||+=|...-.|+|++.||++||.+.++.++++ ||=|||.|.+-.+|.+||.. +++ .++-|- .++|
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~a--LHgSqTmpGASSSLVV 95 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINA--LHGSQTMPGASSSLVV 95 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHH--hcccccCCCCccceEE
Confidence 5788999999999999999999999999999999964 89999999999999999865 442 334443 7888
Q ss_pred Eecccc
Q psy9171 101 LISGYR 106 (118)
Q Consensus 101 ~~S~~~ 106 (118)
.|+...
T Consensus 96 K~ADTd 101 (371)
T KOG0146|consen 96 KFADTD 101 (371)
T ss_pred Eeccch
Confidence 888653
No 90
>KOG0106|consensus
Probab=97.84 E-value=1.3e-05 Score=63.16 Aligned_cols=65 Identities=17% Similarity=0.092 Sum_probs=59.3
Q ss_pred EEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEE
Q psy9171 32 VIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVS 100 (118)
Q Consensus 32 vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V 100 (118)
++.+.|++-++..++|...|+++|.+.++.+ .+++|||+|...++|..|+.- +++..+.|+.+.+
T Consensus 101 r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--~~~~~~v~Fs~~~da~ra~~~--l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 101 RLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--RRNFAFVEFSEQEDAKRALEK--LDGKKLNGRRISV 165 (216)
T ss_pred eeeeccchhhhhHHHHhhhhcccCCCchhhh--hccccceeehhhhhhhhcchh--ccchhhcCceeee
Confidence 6889999999999999999999999977766 679999999999999999854 8899999999988
No 91
>KOG1457|consensus
Probab=97.68 E-value=0.00011 Score=59.08 Aligned_cols=75 Identities=17% Similarity=0.188 Sum_probs=62.6
Q ss_pred CcEEEeCCCCCcccHHHHHHhccCCCceeEEEEe-cc------CceEEEeecchhhhhcccccccccceeeC---CeeeE
Q psy9171 30 SRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVL-KG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLK---GKNQV 99 (118)
Q Consensus 30 S~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~-~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~---Gr~v~ 99 (118)
=|+|||.+||.|+..-||..||-+|-......+- .+ +..||+.|.+..+|.+|... +||..++ |.++.
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamna--LNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNA--LNGVRFDPETGSTLH 111 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHH--hcCeeeccccCceeE
Confidence 4689999999999999999999999888766663 33 35799999999999999744 8888875 67888
Q ss_pred EEecccc
Q psy9171 100 SLISGYR 106 (118)
Q Consensus 100 V~~S~~~ 106 (118)
+.++++-
T Consensus 112 iElAKSN 118 (284)
T KOG1457|consen 112 IELAKSN 118 (284)
T ss_pred eeehhcC
Confidence 8888763
No 92
>KOG4211|consensus
Probab=97.64 E-value=0.00011 Score=63.62 Aligned_cols=74 Identities=12% Similarity=0.093 Sum_probs=58.8
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEE-Eecc-----CceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVL-VLKG-----KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL 101 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~-l~~~-----kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~ 101 (118)
.+.-||-+|.||+.|||+|+.+.|+.--.|.+-. ++.+ .+.|||+|++.+.|+.|+. -+.-.|.-|=|.|-
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~---rhre~iGhRYIEvF 177 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALG---RHRENIGHRYIEVF 177 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHH---HHHHhhccceEEee
Confidence 5677999999999999999999999998888733 3322 4889999999999999953 34555666667776
Q ss_pred ecc
Q psy9171 102 ISG 104 (118)
Q Consensus 102 ~S~ 104 (118)
-|.
T Consensus 178 ~Ss 180 (510)
T KOG4211|consen 178 RSS 180 (510)
T ss_pred hhH
Confidence 663
No 93
>KOG0120|consensus
Probab=97.57 E-value=4.7e-05 Score=66.22 Aligned_cols=69 Identities=20% Similarity=0.179 Sum_probs=64.1
Q ss_pred EEeCCCCCcccHHHHHHhccCCCceeEEEEec------cCceEEEeecchhhhhcccccccccceeeCCeeeEEEec
Q psy9171 33 IHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK------GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLIS 103 (118)
Q Consensus 33 L~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~------~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S 103 (118)
++|++||...++.++.++.+.||.+..+.++. .|++||.|+.|......|+.+ +|+..+.|+++.++.|
T Consensus 292 i~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~ag--LnGm~lgd~~lvvq~A 366 (500)
T KOG0120|consen 292 IFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAG--LNGMQLGDKKLVVQRA 366 (500)
T ss_pred hhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcc--cchhhhcCceeEeehh
Confidence 89999999999999999999999999998875 389999999999999999877 9999999999999876
No 94
>KOG4211|consensus
Probab=97.47 E-value=0.00018 Score=62.48 Aligned_cols=72 Identities=13% Similarity=0.122 Sum_probs=54.9
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec----cCceEEEeecchhhhhcccccccccceeeCCeeeEEEec
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK----GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLIS 103 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~----~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S 103 (118)
+-...|-+|.|||.+|++||+..|+.-+ |.++.+.. ..|.|||||.++|++..|++ .+--.+.-|=|.|--+
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alk---kdR~~mg~RYIEVf~~ 83 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALK---KDRESMGHRYIEVFTA 83 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHH---hhHHHhCCceEEEEcc
Confidence 3456799999999999999999999886 57776654 25899999999999999964 3444444455555443
No 95
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.44 E-value=0.00043 Score=48.32 Aligned_cols=80 Identities=14% Similarity=0.084 Sum_probs=57.8
Q ss_pred EEEeCCCCCcccHHHHHHhccCC--CceeEEEEec------cCceEEEeecchhhhhcccccccccceeeC----CeeeE
Q psy9171 32 VIHIRNIPNEVTEAEIIHLGIPF--GRVTNVLVLK------GKNQLLLHLEAEIIHLGIPFGRVTNVLVLK----GKNQV 99 (118)
Q Consensus 32 vL~V~NLP~~vte~dL~~Lf~~f--G~V~~v~l~~------~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~----Gr~v~ 99 (118)
+|-|||||...|.++|.+++... |..-=+-+.- ..|+|||-|-+.+.|...... .++..+. .|...
T Consensus 3 TvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~--f~g~~w~~~~s~Kvc~ 80 (97)
T PF04059_consen 3 TVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKA--FNGKKWPNFNSKKVCE 80 (97)
T ss_pred eEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHH--HcCCccccCCCCcEEE
Confidence 68899999999999998876443 4433233321 379999999999999877543 4455543 67889
Q ss_pred EEeccccchHHHHH
Q psy9171 100 SLISGYRNRQSAAL 113 (118)
Q Consensus 100 V~~S~~~~~~~~~~ 113 (118)
+.||+-|-.+..++
T Consensus 81 i~yAriQG~~alv~ 94 (97)
T PF04059_consen 81 ISYARIQGKDALVE 94 (97)
T ss_pred EehhHhhCHHHHHH
Confidence 99998877665543
No 96
>KOG1855|consensus
Probab=97.33 E-value=0.00012 Score=62.83 Aligned_cols=57 Identities=19% Similarity=0.179 Sum_probs=50.0
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc-------------------CceEEEeecchhhhhcccc
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG-------------------KNQLLLHLEAEIIHLGIPF 84 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~-------------------kgqAFVEm~~~e~A~~ai~ 84 (118)
-||++|.+.|||.+-.-+.|..||+.+|.|.++++++- +--||||++..++|..|..
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e 304 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARE 304 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHH
Confidence 38999999999998777999999999999999999742 2349999999999999854
No 97
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.25 E-value=0.00067 Score=42.09 Aligned_cols=53 Identities=17% Similarity=0.281 Sum_probs=43.7
Q ss_pred CcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhccc
Q psy9171 30 SRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIP 83 (118)
Q Consensus 30 S~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai 83 (118)
++.|-|.+.|++..+. ++..|..||.|.++.+-..++.++|.|.+..+|.+|+
T Consensus 1 ~~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 1 STWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred CcEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCCCCcEEEEEECCHHHHHhhC
Confidence 3567788888876654 4557778999999998877899999999999999884
No 98
>KOG3152|consensus
Probab=97.03 E-value=0.00019 Score=58.17 Aligned_cols=65 Identities=18% Similarity=0.240 Sum_probs=55.9
Q ss_pred cEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc----------------C--ceEEEeecchhhhhccccccccccee
Q psy9171 31 RVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG----------------K--NQLLLHLEAEIIHLGIPFGRVTNVLV 92 (118)
Q Consensus 31 ~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~----------------k--gqAFVEm~~~e~A~~ai~~~~~n~~~ 92 (118)
=|||++|||+...-.-|++++++||.|-.|-+-+. + ..++|||.+...|..+.. .+|+-.
T Consensus 75 GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe--~Lnn~~ 152 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAE--LLNNTP 152 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHH--HhCCCc
Confidence 38999999999999999999999999999988641 1 238999999999999965 488999
Q ss_pred eCCee
Q psy9171 93 LKGKN 97 (118)
Q Consensus 93 i~Gr~ 97 (118)
|.||.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99885
No 99
>KOG1996|consensus
Probab=96.97 E-value=0.0005 Score=57.09 Aligned_cols=73 Identities=21% Similarity=0.301 Sum_probs=58.3
Q ss_pred CCCcEEEeCCCCC--ccc---HHHHHHhccCCCceeEEEEeccCc-------eEEEeecchhhhhcccccccccceeeCC
Q psy9171 28 KPSRVIHIRNIPN--EVT---EAEIIHLGIPFGRVTNVLVLKGKN-------QLLLHLEAEIIHLGIPFGRVTNVLVLKG 95 (118)
Q Consensus 28 ~PS~vL~V~NLP~--~vt---e~dL~~Lf~~fG~V~~v~l~~~kg-------qAFVEm~~~e~A~~ai~~~~~n~~~i~G 95 (118)
-|++||.+||.=. ++. |+++.+-++.||+|.+|.+...-+ --||||+..++|+.|+.. +|+..+.|
T Consensus 279 ~ptkvlllrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~Vd--lnGRyFGG 356 (378)
T KOG1996|consen 279 CPTKVLLLRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVD--LNGRYFGG 356 (378)
T ss_pred cchHHHHhhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHh--cCCceecc
Confidence 4788899998753 222 455677899999999999975322 269999999999999865 99999999
Q ss_pred eeeEEEe
Q psy9171 96 KNQVSLI 102 (118)
Q Consensus 96 r~v~V~~ 102 (118)
|.+.-.|
T Consensus 357 r~v~A~F 363 (378)
T KOG1996|consen 357 RVVSACF 363 (378)
T ss_pred eeeehee
Confidence 9987665
No 100
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=96.87 E-value=0.0017 Score=44.93 Aligned_cols=68 Identities=13% Similarity=0.119 Sum_probs=45.9
Q ss_pred EEEeCCCCCcccHHH----HHHhccCCC-ceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEeccc
Q psy9171 32 VIHIRNIPNEVTEAE----IIHLGIPFG-RVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGY 105 (118)
Q Consensus 32 vL~V~NLP~~vte~d----L~~Lf~~fG-~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~ 105 (118)
.|+|.|||.+..... |.+|+...| +|.++ ..+-|.|-|.+.+.|..|.+ -+++=.+.|+.|.+.|+..
T Consensus 4 ~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----~~~tAilrF~~~~~A~RA~K--RmegEdVfG~kI~v~~~~~ 76 (90)
T PF11608_consen 4 LLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----SGGTAILRFPNQEFAERAQK--RMEGEDVFGNKISVSFSPK 76 (90)
T ss_dssp EEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------TT-EEEEESSHHHHHHHHH--HHTT--SSSS--EEESS--
T ss_pred EEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----eCCEEEEEeCCHHHHHHHHH--hhcccccccceEEEEEcCC
Confidence 699999999766544 577888885 45554 25889999999999999974 4889999999999999943
No 101
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.76 E-value=0.0017 Score=55.02 Aligned_cols=73 Identities=12% Similarity=0.175 Sum_probs=60.6
Q ss_pred EEEeCCCCCcccHHHH------HHhccCCCceeEEEEecc-------CceE--EEeecchhhhhcccccccccceeeCCe
Q psy9171 32 VIHIRNIPNEVTEAEI------IHLGIPFGRVTNVLVLKG-------KNQL--LLHLEAEIIHLGIPFGRVTNVLVLKGK 96 (118)
Q Consensus 32 vL~V~NLP~~vte~dL------~~Lf~~fG~V~~v~l~~~-------kgqA--FVEm~~~e~A~~ai~~~~~n~~~i~Gr 96 (118)
.+||-.||+.+-.+++ .+.|.+||+|.++.+-+. -+.+ +|.|.+.|+|.+||.. .++..++||
T Consensus 116 LvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~--vDgs~~DGr 193 (480)
T COG5175 116 LVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAE--VDGSLLDGR 193 (480)
T ss_pred eeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHH--hccccccCc
Confidence 4799999999888874 468999999999988643 2334 9999999999999964 789999999
Q ss_pred eeEEEecccc
Q psy9171 97 NQVSLISGYR 106 (118)
Q Consensus 97 ~v~V~~S~~~ 106 (118)
-++-.|-+.+
T Consensus 194 ~lkatYGTTK 203 (480)
T COG5175 194 VLKATYGTTK 203 (480)
T ss_pred eEeeecCchH
Confidence 9998887653
No 102
>KOG4210|consensus
Probab=96.66 E-value=0.0013 Score=53.33 Aligned_cols=88 Identities=11% Similarity=0.034 Sum_probs=69.2
Q ss_pred eeeccCC-CCCCCCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccc
Q psy9171 16 VQAKLDR-QKSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVT 88 (118)
Q Consensus 16 ~~~~~~~-~~~~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~ 88 (118)
++.+.+. +....++....++.|++..+++++|...|..+|.|..+++... +++|++++.+...+..++..
T Consensus 170 ~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~--- 246 (285)
T KOG4210|consen 170 LRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND--- 246 (285)
T ss_pred ccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc---
Confidence 4444553 3344344444459999999999999999999999999999753 79999999999999998642
Q ss_pred cceeeCCeeeEEEecccc
Q psy9171 89 NVLVLKGKNQVSLISGYR 106 (118)
Q Consensus 89 n~~~i~Gr~v~V~~S~~~ 106 (118)
+...+.|+++.+.+...+
T Consensus 247 ~~~~~~~~~~~~~~~~~~ 264 (285)
T KOG4210|consen 247 QTRSIGGRPLRLEEDEPR 264 (285)
T ss_pred ccCcccCcccccccCCCC
Confidence 367788899988887765
No 103
>KOG0147|consensus
Probab=96.61 E-value=0.00066 Score=59.53 Aligned_cols=72 Identities=13% Similarity=0.056 Sum_probs=63.5
Q ss_pred CcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEEec
Q psy9171 30 SRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLIS 103 (118)
Q Consensus 30 S~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S 103 (118)
-+++|+-.|+-..++.||.++|+.+|+|..|+++.+ ||-|+|||.|+++-..||. ++|..+.|-+|.++-+
T Consensus 179 ~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia---LsGqrllg~pv~vq~s 255 (549)
T KOG0147|consen 179 QRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA---LSGQRLLGVPVIVQLS 255 (549)
T ss_pred HHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh---hcCCcccCceeEeccc
Confidence 357888889999999999999999999999999964 7889999999999888873 7899999999988866
Q ss_pred c
Q psy9171 104 G 104 (118)
Q Consensus 104 ~ 104 (118)
.
T Consensus 256 E 256 (549)
T KOG0147|consen 256 E 256 (549)
T ss_pred H
Confidence 4
No 104
>KOG0129|consensus
Probab=96.50 E-value=0.0034 Score=54.91 Aligned_cols=61 Identities=23% Similarity=0.190 Sum_probs=48.1
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCcee-EEE-------EeccCc---eEEEeecchhhhhcccccccc
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVT-NVL-------VLKGKN---QLLLHLEAEIIHLGIPFGRVT 88 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~-~v~-------l~~~kg---qAFVEm~~~e~A~~ai~~~~~ 88 (118)
.-|+.|||+.||++++|++|..-|.+||.+. +-- -.+-+| ++|+-|+++.+....+..|..
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~ 328 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE 328 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh
Confidence 4488999999999999999999999999863 110 011267 999999999998877766553
No 105
>KOG4307|consensus
Probab=96.36 E-value=0.0085 Score=54.59 Aligned_cols=69 Identities=13% Similarity=0.181 Sum_probs=60.4
Q ss_pred cEEEeCCCCCcccHHHHHHhccCCCceeEEEEec--c----CceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171 31 RVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK--G----KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL 101 (118)
Q Consensus 31 ~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~--~----kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~ 101 (118)
+||-++|+|.+++-+|+.+.|.-|-..-+-.+++ + .|.|-|-|++.++|.+|... ++.-.|+.|.|++.
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~d--l~~~~i~nr~V~l~ 942 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMD--LDGQKIRNRVVSLR 942 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhc--cccCcccceeEEEE
Confidence 3999999999999999999999998887666664 1 58899999999999999754 88999999998875
No 106
>KOG1365|consensus
Probab=96.21 E-value=0.0074 Score=51.83 Aligned_cols=54 Identities=15% Similarity=0.219 Sum_probs=44.4
Q ss_pred cEEEeCCCCCcccHHHHHHhccC---C-CceeEEEEecc-----CceEEEeecchhhhhcccc
Q psy9171 31 RVIHIRNIPNEVTEAEIIHLGIP---F-GRVTNVLVLKG-----KNQLLLHLEAEIIHLGIPF 84 (118)
Q Consensus 31 ~vL~V~NLP~~vte~dL~~Lf~~---f-G~V~~v~l~~~-----kgqAFVEm~~~e~A~~ai~ 84 (118)
..+..|+||+++|+.|+.+.|.| . |....++.++. .|.|||.|+.+++|..|+.
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~ 224 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALR 224 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHH
Confidence 35889999999999999999954 3 35567777742 5899999999999999863
No 107
>KOG0128|consensus
Probab=96.16 E-value=0.0025 Score=58.49 Aligned_cols=71 Identities=18% Similarity=0.127 Sum_probs=58.3
Q ss_pred cEEEeCCCCCcccHHHHHHhccCCCceeEEEEec-----cCceEEEeecchhhhhcccccccccceeeCCeeeEEEec
Q psy9171 31 RVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK-----GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLIS 103 (118)
Q Consensus 31 ~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~-----~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S 103 (118)
..++|+|.|...|.++|..++..+|++.+++++. .||-|+++++++.+|.+++.. .+...++-+.+.++-|
T Consensus 737 ~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s--~d~~~~rE~~~~v~vs 812 (881)
T KOG0128|consen 737 ISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVAS--VDVAGKRENNGEVQVS 812 (881)
T ss_pred hhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhccc--chhhhhhhcCcccccc
Confidence 3589999999999999999999999999998764 278999999999999999754 4455566555555543
No 108
>KOG4574|consensus
Probab=96.04 E-value=0.0029 Score=58.29 Aligned_cols=76 Identities=12% Similarity=0.077 Sum_probs=65.0
Q ss_pred CcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEeccc
Q psy9171 30 SRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGY 105 (118)
Q Consensus 30 S~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~ 105 (118)
-+..++.|.+-..|..-|..||+.||.|.+...+++-+.|.|+|.+.++|..|....+-......|-|.+|.||+-
T Consensus 298 qp~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 298 QPKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred cchhhhhcccccchHHHHHHHHHhhcchhhheecccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 4455667777788888899999999999999999999999999999999999977655446778899999999975
No 109
>KOG2416|consensus
Probab=95.94 E-value=0.0034 Score=56.09 Aligned_cols=87 Identities=15% Similarity=0.072 Sum_probs=65.0
Q ss_pred eeeccCCCCCCCCCCcEEEeCCCCCcccHHHHHHhccC-CCceeEEEEeccCceEEEeecchhhhhccccccccccee--
Q psy9171 16 VQAKLDRQKSDFKPSRVIHIRNIPNEVTEAEIIHLGIP-FGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLV-- 92 (118)
Q Consensus 16 ~~~~~~~~~~~~~PS~vL~V~NLP~~vte~dL~~Lf~~-fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~-- 92 (118)
++.+.++-+ -..+|.||||+||-.-.|..+|..|.+. -|.|..+-|-+-|..+||-+.++++|.+-... ++++.
T Consensus 431 ~~~RvpSPs-R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkIKShCyV~yss~eEA~atr~A--lhnV~WP 507 (718)
T KOG2416|consen 431 PKERVPSPS-RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKIKSHCYVSYSSVEEAAATREA--LHNVQWP 507 (718)
T ss_pred ccccCCCCC-CCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHhhcceeEecccHHHHHHHHHH--HhccccC
Confidence 445555433 5588999999999999999999999985 55556662223489999999999999876543 44443
Q ss_pred -eCCeeeEEEeccc
Q psy9171 93 -LKGKNQVSLISGY 105 (118)
Q Consensus 93 -i~Gr~v~V~~S~~ 105 (118)
=++|.|-+.|.+.
T Consensus 508 ~sNPK~L~adf~~~ 521 (718)
T KOG2416|consen 508 PSNPKHLIADFVRA 521 (718)
T ss_pred CCCCceeEeeecch
Confidence 4778888888754
No 110
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.90 E-value=0.019 Score=39.63 Aligned_cols=51 Identities=20% Similarity=0.288 Sum_probs=37.9
Q ss_pred cEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccc
Q psy9171 31 RVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPF 84 (118)
Q Consensus 31 ~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~ 84 (118)
-|.|+. .|.+....||.+||+|||.|.=- -+ +-..|||-..+.+.|..++.
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~Vs-Wi-~dTSAfV~l~~r~~~~~v~~ 60 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIYVS-WI-NDTSAFVALHNRDQAKVVMN 60 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEEEE-EE-CTTEEEEEECCCHHHHHHHH
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEEEE-EE-cCCcEEEEeecHHHHHHHHH
Confidence 368888 99999999999999999997422 22 44789999999999987754
No 111
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.88 E-value=0.016 Score=43.39 Aligned_cols=75 Identities=9% Similarity=0.107 Sum_probs=51.2
Q ss_pred CCCCCcEEEeCCCC----C-cccHH----HHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCe
Q psy9171 26 DFKPSRVIHIRNIP----N-EVTEA----EIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGK 96 (118)
Q Consensus 26 ~~~PS~vL~V~NLP----~-~vte~----dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr 96 (118)
-.||.-++-|+=+. . ..-.+ +|.+.|.+||.|.-++.+. +.-+|.|.+-.+|.+|+ .+++..+.|+
T Consensus 23 ~GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~--~~mwVTF~dg~sALaal---s~dg~~v~g~ 97 (146)
T PF08952_consen 23 QGPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG--DTMWVTFRDGQSALAAL---SLDGIQVNGR 97 (146)
T ss_dssp ---TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET--TCEEEEESSCHHHHHHH---HGCCSEETTE
T ss_pred cCCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC--CeEEEEECccHHHHHHH---ccCCcEECCE
Confidence 34676665544333 2 23333 6678899999998888875 57899999999999996 3889999999
Q ss_pred eeEEEeccc
Q psy9171 97 NQVSLISGY 105 (118)
Q Consensus 97 ~v~V~~S~~ 105 (118)
.+.+.--+.
T Consensus 98 ~l~i~LKtp 106 (146)
T PF08952_consen 98 TLKIRLKTP 106 (146)
T ss_dssp EEEEEE---
T ss_pred EEEEEeCCc
Confidence 999987654
No 112
>KOG1548|consensus
Probab=95.80 E-value=0.012 Score=49.74 Aligned_cols=71 Identities=13% Similarity=0.151 Sum_probs=56.5
Q ss_pred CCcEEEeCCCCC----ccc-------HHHHHHhccCCCceeEEEEe--ccCceEEEeecchhhhhcccccccccceeeCC
Q psy9171 29 PSRVIHIRNIPN----EVT-------EAEIIHLGIPFGRVTNVLVL--KGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKG 95 (118)
Q Consensus 29 PS~vL~V~NLP~----~vt-------e~dL~~Lf~~fG~V~~v~l~--~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~G 95 (118)
..++|-++|+=. +.+ ++||.+=++.||.|.+|.+. ...|-+-|.|.+.++|..||.. ++|..+.|
T Consensus 264 ~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~--m~GR~fdg 341 (382)
T KOG1548|consen 264 ADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQT--MDGRWFDG 341 (382)
T ss_pred CCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHH--hcCeeecc
Confidence 356788888732 222 44556679999999999998 4578999999999999999965 89999999
Q ss_pred eeeEEE
Q psy9171 96 KNQVSL 101 (118)
Q Consensus 96 r~v~V~ 101 (118)
|.|.-.
T Consensus 342 Rql~A~ 347 (382)
T KOG1548|consen 342 RQLTAS 347 (382)
T ss_pred eEEEEE
Confidence 988543
No 113
>KOG0129|consensus
Probab=95.45 E-value=0.026 Score=49.51 Aligned_cols=63 Identities=17% Similarity=0.223 Sum_probs=54.1
Q ss_pred CCCCCCCcEEEeCCCCCcccHHHHHHhcc-CCCceeEEEEecc------CceEEEeecchhhhhcccccc
Q psy9171 24 KSDFKPSRVIHIRNIPNEVTEAEIIHLGI-PFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGR 86 (118)
Q Consensus 24 ~~~~~PS~vL~V~NLP~~vte~dL~~Lf~-~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~ 86 (118)
..++.|.|||||+.||.-+|-+||..+++ .||.|.-+-+-++ ||-|-|.|.+..+=.+||...
T Consensus 364 sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsar 433 (520)
T KOG0129|consen 364 NQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISAR 433 (520)
T ss_pred CcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhhh
Confidence 46679999999999999999999999998 8999998888654 788899998888877776543
No 114
>KOG1365|consensus
Probab=95.36 E-value=0.009 Score=51.32 Aligned_cols=70 Identities=13% Similarity=0.191 Sum_probs=50.8
Q ss_pred EEEeCCCCCcccHHHHHHhccCCCceeE---EEEe-c--c--CceEEEeecchhhhhcccccccccceeeCCeeeEEEec
Q psy9171 32 VIHIRNIPNEVTEAEIIHLGIPFGRVTN---VLVL-K--G--KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLIS 103 (118)
Q Consensus 32 vL~V~NLP~~vte~dL~~Lf~~fG~V~~---v~l~-~--~--kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S 103 (118)
.|.+|+||++.|.+|+...|..|-.-.. |.|+ + + .|.|||||.+.|.|.+|...+.. -..++|=+.|-=+
T Consensus 282 cvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk--~~mk~RYiEvfp~ 359 (508)
T KOG1365|consen 282 CVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHK--KLMKSRYIEVFPC 359 (508)
T ss_pred eeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHH--hhcccceEEEeec
Confidence 5999999999999999999888765432 3333 2 2 58899999999999999655442 2236666655444
No 115
>KOG4676|consensus
Probab=95.32 E-value=0.037 Score=47.58 Aligned_cols=82 Identities=13% Similarity=0.106 Sum_probs=63.1
Q ss_pred cEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc---------CceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171 31 RVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG---------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL 101 (118)
Q Consensus 31 ~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~---------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~ 101 (118)
.||+|-||.+.+|.+++..||...|+|..+.+++. ..-+||-|.|...+..|- ..+|-..|.---+++-
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ--hLtntvfvdraliv~p 85 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ--HLTNTVFVDRALIVRP 85 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh--hhccceeeeeeEEEEe
Confidence 39999999999999999999999999999999862 456999999999988883 3466666666566666
Q ss_pred eccccchHHHHHh
Q psy9171 102 ISGYRNRQSAALM 114 (118)
Q Consensus 102 ~S~~~~~~~~~~~ 114 (118)
|..----.+.|+-
T Consensus 86 ~~~~~~p~r~af~ 98 (479)
T KOG4676|consen 86 YGDEVIPDRFAFV 98 (479)
T ss_pred cCCCCCccHHHHH
Confidence 6544333343433
No 116
>KOG0226|consensus
Probab=95.24 E-value=0.0069 Score=49.38 Aligned_cols=76 Identities=14% Similarity=0.099 Sum_probs=65.1
Q ss_pred EEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEEeccc
Q psy9171 32 VIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGY 105 (118)
Q Consensus 32 vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~ 105 (118)
-||-+.|..+++++-|...|..|-.+...+.+++ ||++||.|.|.+++..|+ +++||--+..|++.+.-|..
T Consensus 192 RIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAm--rem~gkyVgsrpiklRkS~w 269 (290)
T KOG0226|consen 192 RIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAM--REMNGKYVGSRPIKLRKSEW 269 (290)
T ss_pred eeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHH--HhhcccccccchhHhhhhhH
Confidence 4888999999999999999999998887777753 799999999999999997 56999999999998877665
Q ss_pred cchH
Q psy9171 106 RNRQ 109 (118)
Q Consensus 106 ~~~~ 109 (118)
+-||
T Consensus 270 keRn 273 (290)
T KOG0226|consen 270 KERN 273 (290)
T ss_pred Hhhh
Confidence 4443
No 117
>KOG4307|consensus
Probab=94.93 E-value=0.068 Score=48.94 Aligned_cols=75 Identities=17% Similarity=0.240 Sum_probs=60.9
Q ss_pred cEEEeCCCCCcccHHHHHHhccCC----CceeEEEEecc-CceEEEeecchhhhhcccccccccceeeCCeeeEEEeccc
Q psy9171 31 RVIHIRNIPNEVTEAEIIHLGIPF----GRVTNVLVLKG-KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGY 105 (118)
Q Consensus 31 ~vL~V~NLP~~vte~dL~~Lf~~f----G~V~~v~l~~~-kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~ 105 (118)
-+|.+.|||+..---|++..|+-. |. |.++.+ -|.|||-|.+.|+|.-|+. .+...|+|-.|++..|..
T Consensus 3 VIIRLqnLP~tAga~DIR~FFSGL~IPdGg---VHIIGGe~GeaFI~FsTDeDARlaM~---kdr~~i~g~~VrLlLSSk 76 (944)
T KOG4307|consen 3 VIIRLQNLPMTAGASDIRTFFSGLKIPDGG---VHIIGGEEGEAFIGFSTDEDARLAMT---KDRLMIHGAEVRLLLSSK 76 (944)
T ss_pred eEEEecCCcccccchHHHHhhcccccCCCc---eEEecccccceEEEecccchhhhhhh---hcccceecceEEEEeccH
Confidence 478999999999999999998744 54 455553 6999999999999998863 569999999999999966
Q ss_pred cchHHH
Q psy9171 106 RNRQSA 111 (118)
Q Consensus 106 ~~~~~~ 111 (118)
.--|..
T Consensus 77 sEmq~v 82 (944)
T KOG4307|consen 77 SEMQSV 82 (944)
T ss_pred HHHHHH
Confidence 544443
No 118
>KOG1995|consensus
Probab=94.74 E-value=0.028 Score=47.24 Aligned_cols=79 Identities=11% Similarity=0.068 Sum_probs=64.2
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeE--------EEEec------cCceEEEeecchhhhhcccccccccceee
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTN--------VLVLK------GKNQLLLHLEAEIIHLGIPFGRVTNVLVL 93 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~--------v~l~~------~kgqAFVEm~~~e~A~~ai~~~~~n~~~i 93 (118)
.-.-++||.+||..++++++...|.+.|.|.. +.+-+ .|+.|.|.++|..+|++|+.. .+...+
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~--~agkdf 141 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEW--FAGKDF 141 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhh--hccccc
Confidence 34557999999999999999999999998831 11111 289999999999999999976 668888
Q ss_pred CCeeeEEEeccccch
Q psy9171 94 KGKNQVSLISGYRNR 108 (118)
Q Consensus 94 ~Gr~v~V~~S~~~~~ 108 (118)
.|-++.|..+..++.
T Consensus 142 ~gn~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 142 CGNTIKVSLAERRTG 156 (351)
T ss_pred cCCCchhhhhhhccC
Confidence 888888888877654
No 119
>KOG2314|consensus
Probab=94.54 E-value=0.043 Score=49.04 Aligned_cols=64 Identities=13% Similarity=0.029 Sum_probs=49.7
Q ss_pred CcEEEeCCCCC--cccHH----HHHHhccCCCceeEEEEec-----cCceEEEeecchhhhhcccccccccceeeCC
Q psy9171 30 SRVIHIRNIPN--EVTEA----EIIHLGIPFGRVTNVLVLK-----GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKG 95 (118)
Q Consensus 30 S~vL~V~NLP~--~vte~----dL~~Lf~~fG~V~~v~l~~-----~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~G 95 (118)
..+|.|-|+|- ...-+ -|..+|+.+|++.|+.+.. .+|++|+|+++..+|..|++. +||-.+.-
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~--l~G~~ldk 132 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKS--LNGKRLDK 132 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHh--cccceecc
Confidence 45899999996 22222 2356899999999999973 289999999999999999965 77655543
No 120
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=94.49 E-value=0.15 Score=35.64 Aligned_cols=68 Identities=10% Similarity=0.135 Sum_probs=50.1
Q ss_pred EEEeCCCCCcccHHHHHHhccCCCceeEEE-------------EeccCceEEEeecchhhhhcccccccccceeeCCee-
Q psy9171 32 VIHIRNIPNEVTEAEIIHLGIPFGRVTNVL-------------VLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKN- 97 (118)
Q Consensus 32 vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~-------------l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~- 97 (118)
-|.|=+-|+. .-..+++.|+.||.|++.. ...+.|---|.|++..+|.+|+. .|+..+.|.-
T Consensus 8 wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~---~NG~i~~g~~m 83 (100)
T PF05172_consen 8 WVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ---KNGTIFSGSLM 83 (100)
T ss_dssp EEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT---TTTEEETTCEE
T ss_pred EEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH---hCCeEEcCcEE
Confidence 4666677776 6678899999999999885 44567889999999999999974 7899998864
Q ss_pred eEEEec
Q psy9171 98 QVSLIS 103 (118)
Q Consensus 98 v~V~~S 103 (118)
+-|-+.
T Consensus 84 vGV~~~ 89 (100)
T PF05172_consen 84 VGVKPC 89 (100)
T ss_dssp EEEEE-
T ss_pred EEEEEc
Confidence 446666
No 121
>KOG0120|consensus
Probab=94.18 E-value=0.087 Score=46.24 Aligned_cols=70 Identities=17% Similarity=0.202 Sum_probs=54.8
Q ss_pred CCCcEEEeCCCCCcccHHHH-------------HHhccCCCceeEEEEec---------cCceEEEeecchhhhhccccc
Q psy9171 28 KPSRVIHIRNIPNEVTEAEI-------------IHLGIPFGRVTNVLVLK---------GKNQLLLHLEAEIIHLGIPFG 85 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL-------------~~Lf~~fG~V~~v~l~~---------~kgqAFVEm~~~e~A~~ai~~ 85 (118)
.|.+||-+-|+ +|++|| ..=|+.||.|.++.+-. +-|--||||.+.++++.|...
T Consensus 397 ~~t~Vl~L~n~---Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~ 473 (500)
T KOG0120|consen 397 IPTEVLCLTNV---VTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEE 473 (500)
T ss_pred Ccchhhhhhhc---CCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHH
Confidence 77777777665 333333 34589999999998853 256689999999999999765
Q ss_pred ccccceeeCCeeeEEEe
Q psy9171 86 RVTNVLVLKGKNQVSLI 102 (118)
Q Consensus 86 ~~~n~~~i~Gr~v~V~~ 102 (118)
++|..+.||.|+-.|
T Consensus 474 --L~GrKF~nRtVvtsY 488 (500)
T KOG0120|consen 474 --LTGRKFANRTVVASY 488 (500)
T ss_pred --ccCceeCCcEEEEEe
Confidence 899999999998776
No 122
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=93.95 E-value=0.13 Score=39.48 Aligned_cols=64 Identities=13% Similarity=-0.033 Sum_probs=47.6
Q ss_pred cHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhccccccccc--ceeeCCeeeEEEeccccch
Q psy9171 43 TEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTN--VLVLKGKNQVSLISGYRNR 108 (118)
Q Consensus 43 te~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n--~~~i~Gr~v~V~~S~~~~~ 108 (118)
..+.|.++|..|+.+..+..++.-+-..|.|.+.++|..|-.. ++ +..+.|..+++.|+....+
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sFrRi~v~f~~~~~A~~~r~~--l~~~~~~~~g~~l~~yf~~~~~~ 73 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSFRRIRVVFESPESAQRARQL--LHWDGTSFNGKRLRVYFGQPTPI 73 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTTTEEEEE-SSTTHHHHHHHT--ST--TSEETTEE-EEE----SS-
T ss_pred hHHHHHHHHHhcCCceEEEEcCCCCEEEEEeCCHHHHHHHHHH--hcccccccCCCceEEEEcccccc
Confidence 4578899999999999999999888899999999999999543 55 8899999999999976665
No 123
>KOG2202|consensus
Probab=93.87 E-value=0.016 Score=46.92 Aligned_cols=59 Identities=12% Similarity=0.064 Sum_probs=47.7
Q ss_pred ccCCCceeEEEEecc-----CceEEEeecchhhhhcccccccccceeeCCeeeEEEeccccchHHH
Q psy9171 51 GIPFGRVTNVLVLKG-----KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGYRNRQSA 111 (118)
Q Consensus 51 f~~fG~V~~v~l~~~-----kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~~~~~~~ 111 (118)
-..||.|.++.+-.+ +|-++|.|..+|+|.+|+.. +|+.++.|++|.-.++-=..-.|+
T Consensus 90 ~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~--lnnRw~~G~pi~ae~~pvT~~rea 153 (260)
T KOG2202|consen 90 EDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALED--LNNRWYNGRPIHAELSPVTDFREA 153 (260)
T ss_pred HHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHH--HcCccccCCcceeeecCcCchhhh
Confidence 348999999866543 68899999999999999865 999999999999988855444443
No 124
>KOG2193|consensus
Probab=93.55 E-value=0.047 Score=47.56 Aligned_cols=72 Identities=14% Similarity=-0.057 Sum_probs=56.2
Q ss_pred EEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhccccccccc-ceeeCCeeeEEEeccc
Q psy9171 32 VIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTN-VLVLKGKNQVSLISGY 105 (118)
Q Consensus 32 vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n-~~~i~Gr~v~V~~S~~ 105 (118)
.+|++||.+.++..||.++|..----.+=..+...|+||+...|..-|..++.. ++ ...+.|+++.+.+|-.
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~fl~k~gyafvd~pdq~wa~kaie~--~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVKSGYAFVDCPDQQWANKAIET--LSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCcceeeecceeeccCCchhhhhhhHHh--hchhhhhcCceeeccchhh
Confidence 489999999999999999997652212222233469999999999999999764 33 7889999999998844
No 125
>KOG0115|consensus
Probab=92.03 E-value=0.072 Score=43.40 Aligned_cols=69 Identities=6% Similarity=-0.033 Sum_probs=52.0
Q ss_pred CcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec-c----CceEEEeecchhhhhccccccccc--ceeeCCeee
Q psy9171 30 SRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK-G----KNQLLLHLEAEIIHLGIPFGRVTN--VLVLKGKNQ 98 (118)
Q Consensus 30 S~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~-~----kgqAFVEm~~~e~A~~ai~~~~~n--~~~i~Gr~v 98 (118)
...|||.||+..++-+.|.+-|+.||.|..-++.. + .+..+|++...-.|..|...+... +...-|++.
T Consensus 31 ~a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~ 106 (275)
T KOG0115|consen 31 HAELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPV 106 (275)
T ss_pred cceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCcc
Confidence 46799999999999999999999999997655543 2 356899999998888886654333 333444443
No 126
>KOG4849|consensus
Probab=90.97 E-value=0.12 Score=44.22 Aligned_cols=71 Identities=14% Similarity=0.079 Sum_probs=51.8
Q ss_pred EEEeCCCCCcccHHHHHHhccCCCc--eeEEEEec------cCceEEEeecchhhhhcccccccccceeeCCe-eeEEEe
Q psy9171 32 VIHIRNIPNEVTEAEIIHLGIPFGR--VTNVLVLK------GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGK-NQVSLI 102 (118)
Q Consensus 32 vL~V~NLP~~vte~dL~~Lf~~fG~--V~~v~l~~------~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr-~v~V~~ 102 (118)
.+||+||-|-+|++||.+..+.-|. +.+++... .||+|+|...++.+..+.+.- +---+|.|. +++..|
T Consensus 82 ~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~Mei--LP~k~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 82 CCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEI--LPTKTIHGQSPTVLSY 159 (498)
T ss_pred EEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHh--cccceecCCCCeeecc
Confidence 4899999999999999887776664 23333332 289999999999888877542 446678888 555555
Q ss_pred cc
Q psy9171 103 SG 104 (118)
Q Consensus 103 S~ 104 (118)
-+
T Consensus 160 NK 161 (498)
T KOG4849|consen 160 NK 161 (498)
T ss_pred ch
Confidence 43
No 127
>KOG2591|consensus
Probab=89.54 E-value=0.39 Score=43.11 Aligned_cols=77 Identities=14% Similarity=0.168 Sum_probs=58.1
Q ss_pred CCCCCCCCCCc---EEEeCCCCCcccHHHHHHhccC--CCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCC
Q psy9171 21 DRQKSDFKPSR---VIHIRNIPNEVTEAEIIHLGIP--FGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKG 95 (118)
Q Consensus 21 ~~~~~~~~PS~---vL~V~NLP~~vte~dL~~Lf~~--fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~G 95 (118)
|++-+...|+. ++.+|.||..+.++++..||.- ..++.++....+ .-=||.|+++++|..|.++...---+|.|
T Consensus 163 DekgekVrp~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N-~nWyITfesd~DAQqAykylreevk~fqg 241 (684)
T KOG2591|consen 163 DEKGEKVRPNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN-DNWYITFESDTDAQQAYKYLREEVKTFQG 241 (684)
T ss_pred ccCccccccCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec-CceEEEeecchhHHHHHHHHHHHHHhhcC
Confidence 44445555543 5889999999999999999954 788888887643 33699999999999997654444556778
Q ss_pred eee
Q psy9171 96 KNQ 98 (118)
Q Consensus 96 r~v 98 (118)
|+|
T Consensus 242 KpI 244 (684)
T KOG2591|consen 242 KPI 244 (684)
T ss_pred cch
Confidence 876
No 128
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=89.31 E-value=0.32 Score=36.78 Aligned_cols=75 Identities=15% Similarity=0.151 Sum_probs=42.6
Q ss_pred cEEEeCCCCCcccHHHHHHhccC-CCceeEEEEec----c-------CceEEEeecchhhhhcccccccccc-eeeCCe-
Q psy9171 31 RVIHIRNIPNEVTEAEIIHLGIP-FGRVTNVLVLK----G-------KNQLLLHLEAEIIHLGIPFGRVTNV-LVLKGK- 96 (118)
Q Consensus 31 ~vL~V~NLP~~vte~dL~~Lf~~-fG~V~~v~l~~----~-------kgqAFVEm~~~e~A~~ai~~~~~n~-~~i~Gr- 96 (118)
..|.||+||+..||+++.+..++ +|.-.+..... . -.-|+|.|.+.++...-... .++ ..++.+
T Consensus 8 ~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~--~~g~~F~D~kg 85 (176)
T PF03467_consen 8 TKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDR--FDGHVFVDSKG 85 (176)
T ss_dssp -EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHH--CTTEEEE-TTS
T ss_pred ceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHh--cCCcEEECCCC
Confidence 36999999999999999998888 77663222221 1 24499999998886655332 333 233322
Q ss_pred ---eeEEEeccccc
Q psy9171 97 ---NQVSLISGYRN 107 (118)
Q Consensus 97 ---~v~V~~S~~~~ 107 (118)
+-.|-||-++.
T Consensus 86 ~~~~~~VE~Apyqk 99 (176)
T PF03467_consen 86 NEYPAVVEFAPYQK 99 (176)
T ss_dssp -EEEEEEEE-SS--
T ss_pred CCcceeEEEcchhc
Confidence 44566776644
No 129
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=89.06 E-value=0.97 Score=34.33 Aligned_cols=60 Identities=12% Similarity=0.162 Sum_probs=45.5
Q ss_pred CCCCCCcEEEeCCCCCcc-cHHHHH---HhccCCCceeEEEEeccCceEEEeecchhhhhccccc
Q psy9171 25 SDFKPSRVIHIRNIPNEV-TEAEII---HLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFG 85 (118)
Q Consensus 25 ~~~~PS~vL~V~NLP~~v-te~dL~---~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~ 85 (118)
..-+|=.+|-||=|+... ..+||. .-.+.||+|.++.+. +|..|.|.|.|..+|-.|+..
T Consensus 81 ~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-GrqsavVvF~d~~SAC~Av~A 144 (166)
T PF15023_consen 81 TKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-GRQSAVVVFKDITSACKAVSA 144 (166)
T ss_pred CCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-CCceEEEEehhhHHHHHHHHh
Confidence 334787788887766543 234444 457889999999886 678899999999999999754
No 130
>KOG0112|consensus
Probab=88.68 E-value=0.12 Score=48.14 Aligned_cols=74 Identities=15% Similarity=0.145 Sum_probs=56.1
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec-----cCceEEEeecchhhhhcccccccccceeeCCeeeEEEe
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK-----GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLI 102 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~-----~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~ 102 (118)
.-+++||++||+..+++.++...|..||+|..|.+-. .--+||+-|.+...+-.+-.- +.+..|..-.+.+-+
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e--~s~~~I~~g~~r~gl 447 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFE--ESGPLIGNGTHRIGL 447 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchh--hcCCccccCcccccc
Confidence 4478999999999999999999999999999998853 246799999999988777432 344444333444444
Q ss_pred c
Q psy9171 103 S 103 (118)
Q Consensus 103 S 103 (118)
.
T Consensus 448 G 448 (975)
T KOG0112|consen 448 G 448 (975)
T ss_pred c
Confidence 3
No 131
>KOG0128|consensus
Probab=87.67 E-value=0.054 Score=50.00 Aligned_cols=54 Identities=11% Similarity=0.082 Sum_probs=47.2
Q ss_pred EEEeCCCCCcccHHHHHHhccCCCceeEEEEe----c--cCceEEEeecchhhhhccccc
Q psy9171 32 VIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVL----K--GKNQLLLHLEAEIIHLGIPFG 85 (118)
Q Consensus 32 vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~----~--~kgqAFVEm~~~e~A~~ai~~ 85 (118)
.+|++||++.+.+.||...|++||.+..+.+. + -||.|+++|..++.|.+||.+
T Consensus 669 ~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f 728 (881)
T KOG0128|consen 669 KIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAF 728 (881)
T ss_pred HHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhh
Confidence 47899999999999999999999999877665 1 279999999999999988754
No 132
>KOG0112|consensus
Probab=86.35 E-value=0.69 Score=43.36 Aligned_cols=78 Identities=9% Similarity=0.016 Sum_probs=65.9
Q ss_pred CCCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCC--eeeEEEec
Q psy9171 26 DFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKG--KNQVSLIS 103 (118)
Q Consensus 26 ~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~G--r~v~V~~S 103 (118)
...|++-+.++.|++-+....|...|..||.|.++.+-.+-.+|.+.+++...|++|... +-+..+.| +++.+.|+
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq~yayi~yes~~~aq~a~~~--~rgap~G~P~~r~rvdla 528 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQPYAYIQYESPPAAQAATHD--MRGAPLGGPPRRLRVDLA 528 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCCcceeeecccCccchhhHHH--HhcCcCCCCCcccccccc
Confidence 346788899999999999999999999999999988877788899999999999999754 66777665 46777777
Q ss_pred cc
Q psy9171 104 GY 105 (118)
Q Consensus 104 ~~ 105 (118)
.-
T Consensus 529 ~~ 530 (975)
T KOG0112|consen 529 SP 530 (975)
T ss_pred cC
Confidence 54
No 133
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=78.97 E-value=4.1 Score=26.28 Aligned_cols=50 Identities=14% Similarity=0.180 Sum_probs=38.6
Q ss_pred EEEeCCCCCcccHHHHHHhccCC----CceeEEEEeccCceEEEeecchhhhhcccc
Q psy9171 32 VIHIRNIPNEVTEAEIIHLGIPF----GRVTNVLVLKGKNQLLLHLEAEIIHLGIPF 84 (118)
Q Consensus 32 vL~V~NLP~~vte~dL~~Lf~~f----G~V~~v~l~~~kgqAFVEm~~~e~A~~ai~ 84 (118)
.||||++. +.+-+|+...|..| ++ ..+.-+.+ .-+=|.|.|.+.|.+|+.
T Consensus 7 avhirGvd-~lsT~dI~~y~~~y~~~~~~-~~IEWIdD-tScNvvf~d~~~A~~AL~ 60 (62)
T PF10309_consen 7 AVHIRGVD-ELSTDDIKAYFSEYFDEEGP-FRIEWIDD-TSCNVVFKDEETAARALV 60 (62)
T ss_pred eEEEEcCC-CCCHHHHHHHHHHhcccCCC-ceEEEecC-CcEEEEECCHHHHHHHHH
Confidence 49999984 58899999999998 43 45555544 457788999999988864
No 134
>KOG2253|consensus
Probab=77.10 E-value=1 Score=40.86 Aligned_cols=72 Identities=14% Similarity=0.039 Sum_probs=59.0
Q ss_pred CCCCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171 25 SDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL 101 (118)
Q Consensus 25 ~~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~ 101 (118)
...+|.-++||+|+-..+.++-+..+....|.|.+...+. |+|++|.....+..++. .++...++|+.+..+
T Consensus 35 ~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---fgf~~f~~~~~~~ra~r--~~t~~~~~~~kl~~~ 106 (668)
T KOG2253|consen 35 QPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---FGFCEFLKHIGDLRASR--LLTELNIDDQKLIEN 106 (668)
T ss_pred cCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---hcccchhhHHHHHHHHH--HhcccCCCcchhhcc
Confidence 4557888999999999999999999999999887776554 99999999999998874 466778887765443
No 135
>KOG2068|consensus
Probab=76.62 E-value=0.68 Score=38.77 Aligned_cols=72 Identities=10% Similarity=0.164 Sum_probs=55.1
Q ss_pred cEEEeCCCCCcccHHHHH---HhccCCCceeEEEEeccC---------ceEEEeecchhhhhcccccccccceeeCCeee
Q psy9171 31 RVIHIRNIPNEVTEAEII---HLGIPFGRVTNVLVLKGK---------NQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQ 98 (118)
Q Consensus 31 ~vL~V~NLP~~vte~dL~---~Lf~~fG~V~~v~l~~~k---------gqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v 98 (118)
.-+|+-.||.++-.+++. +-|.+||++..+.+.++. .-++|.++.+|+|..||.. -++....||.+
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~--v~g~~~dg~~l 155 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDD--VDGFVDDGRAL 155 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHH--hhhHHhhhhhh
Confidence 346788888876655553 479999999999997643 2289999999999999876 56888888887
Q ss_pred EEEecc
Q psy9171 99 VSLISG 104 (118)
Q Consensus 99 ~V~~S~ 104 (118)
.-.|.+
T Consensus 156 ka~~gt 161 (327)
T KOG2068|consen 156 KASLGT 161 (327)
T ss_pred HHhhCC
Confidence 665554
No 136
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=75.59 E-value=1.5 Score=28.25 Aligned_cols=59 Identities=14% Similarity=0.106 Sum_probs=31.9
Q ss_pred CcccHHHHHHhccCCCcee-----EEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEec
Q psy9171 40 NEVTEAEIIHLGIPFGRVT-----NVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLIS 103 (118)
Q Consensus 40 ~~vte~dL~~Lf~~fG~V~-----~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S 103 (118)
.+++..+|..++..-+.+. ++.+. .+++|||.+...+.. ++. .+++..++||++.+.-|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~--~~~S~vev~~~~a~~-v~~--~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIF--DNFSFVEVPEEVAEK-VLE--ALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE---SS-EEEEE-TT-HHH-HHH--HHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEe--eeEEEEEECHHHHHH-HHH--HhcCCCCCCeeEEEEEC
Confidence 3678889988887776664 44443 579999998874444 433 37899999999988643
No 137
>KOG2135|consensus
Probab=75.05 E-value=2.5 Score=37.29 Aligned_cols=72 Identities=13% Similarity=0.045 Sum_probs=56.2
Q ss_pred CcEEEeCCCCCc-ccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEecc
Q psy9171 30 SRVIHIRNIPNE-VTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISG 104 (118)
Q Consensus 30 S~vL~V~NLP~~-vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~ 104 (118)
+..|-+...|.+ -|.++|...|.+||.|.++-+--.--.|.|.|.+-.+|-.|.. ..+..|+||.+++..-.
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~~a~vTF~t~aeag~a~~---s~~avlnnr~iKl~whn 444 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSLHAVVTFKTRAEAGEAYA---SHGAVLNNRFIKLFWHN 444 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccccccccCchhhheeeeeccccccchhc---cccceecCceeEEEEec
Confidence 445667777774 5688999999999999998874334569999999999977732 45889999999887643
No 138
>KOG4483|consensus
Probab=73.56 E-value=3.8 Score=35.77 Aligned_cols=55 Identities=9% Similarity=0.067 Sum_probs=46.5
Q ss_pred CcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccc
Q psy9171 30 SRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPF 84 (118)
Q Consensus 30 S~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~ 84 (118)
--||-|-+.|.....+||..+|+.||+=--=.+|.+...||-.|.+...|..|+.
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdthalaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDTHALAVFSSVNRAAEALT 445 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecceeEEeecchHHHHHHhh
Confidence 3589999999999999999999999884333345678899999999999999965
No 139
>KOG4285|consensus
Probab=69.77 E-value=7.1 Score=32.86 Aligned_cols=48 Identities=13% Similarity=0.110 Sum_probs=40.0
Q ss_pred HHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCe
Q psy9171 46 EIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGK 96 (118)
Q Consensus 46 dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr 96 (118)
-|+.+|+.+|.|+++..-..-|.-.|-+.+..+|.+|+. .|+..|.|-
T Consensus 212 ~vL~~F~~cG~Vvkhv~~~ngNwMhirYssr~~A~KALs---kng~ii~g~ 259 (350)
T KOG4285|consen 212 IVLNLFSRCGEVVKHVTPSNGNWMHIRYSSRTHAQKALS---KNGTIIDGD 259 (350)
T ss_pred HHHHHHHhhCeeeeeecCCCCceEEEEecchhHHHHhhh---hcCeeeccc
Confidence 457899999999999987656888999999999999974 567777764
No 140
>KOG4410|consensus
Probab=69.12 E-value=9.4 Score=32.16 Aligned_cols=64 Identities=11% Similarity=0.066 Sum_probs=42.6
Q ss_pred eeccCCCCCCCCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc-CceEEEeecchhhhh
Q psy9171 17 QAKLDRQKSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG-KNQLLLHLEAEIIHL 80 (118)
Q Consensus 17 ~~~~~~~~~~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~-kgqAFVEm~~~e~A~ 80 (118)
+..||.+-...+--.-|++.|||.|+.-.||..-.-.-|-+---.-+++ ++-||+.|.|...+.
T Consensus 317 ~s~g~~~g~~a~~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg~~~k~flh~~~~~~~~ 381 (396)
T KOG4410|consen 317 KSEGDQSGVEAGAKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKGHFGKCFLHFGNRKGVP 381 (396)
T ss_pred cCCCCCCcccCccccceeeccCccccchHHHHHHHHhcCCCceeEeeecCCcceeEecCCccCCC
Confidence 4455544444222334999999999999999877666665433333444 688999999876553
No 141
>PF14893 PNMA: PNMA
Probab=67.36 E-value=4.7 Score=33.74 Aligned_cols=60 Identities=27% Similarity=0.377 Sum_probs=40.7
Q ss_pred CCCCcEEEeCCCCCcccHHHHHHh----ccCCCceeEEEEec-------cCceEEEeecchhhhhcccccccccceeeCC
Q psy9171 27 FKPSRVIHIRNIPNEVTEAEIIHL----GIPFGRVTNVLVLK-------GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKG 95 (118)
Q Consensus 27 ~~PS~vL~V~NLP~~vte~dL~~L----f~~fG~V~~v~l~~-------~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~G 95 (118)
..|-|.|.|-+||++|+++|+.+. +.|.|. ++++. +..-|||||...-.- .+-|..|.|
T Consensus 15 ~~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~---yrvl~~~f~~~~~~~aalve~~e~~n~-------~~iP~~i~g 84 (331)
T PF14893_consen 15 VDPQRALLVLGIPEDCEEAEIEEALQAALSPLGR---YRVLGKMFRREENAKAALVEFAEDVNY-------SLIPREIPG 84 (331)
T ss_pred cChhhhheeecCCCCCCHHHHHHHHHHhhccccc---ceehhhHhhhhcccceeeeecccccch-------hhCchhcCC
Confidence 367788999999999999999664 556776 44442 134489999766332 233555665
Q ss_pred e
Q psy9171 96 K 96 (118)
Q Consensus 96 r 96 (118)
+
T Consensus 85 ~ 85 (331)
T PF14893_consen 85 K 85 (331)
T ss_pred C
Confidence 4
No 142
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=66.72 E-value=4.2 Score=27.88 Aligned_cols=37 Identities=19% Similarity=0.194 Sum_probs=29.6
Q ss_pred cchheeeeeccCCCCCCCCCCcEEEeCCCCCcccHHHHHHh
Q psy9171 10 YTLVMVVQAKLDRQKSDFKPSRVIHIRNIPNEVTEAEIIHL 50 (118)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~PS~vL~V~NLP~~vte~dL~~L 50 (118)
|.+-++.||.... ....++|-+.|||....|++|...
T Consensus 36 ~~~~~~~k~qv~~----~vs~rtVlvsgip~~l~ee~l~D~ 72 (88)
T PF07292_consen 36 VTLGHLQKFQVFS----GVSKRTVLVSGIPDVLDEEELRDK 72 (88)
T ss_pred EecCCceEEEEEE----cccCCEEEEeCCCCCCChhhheee
Confidence 6677778888874 256788999999999999999764
No 143
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=65.88 E-value=35 Score=24.08 Aligned_cols=56 Identities=11% Similarity=0.258 Sum_probs=41.4
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCc-eeEEEEecc----CceEEEeecchhhhhccc
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGR-VTNVLVLKG----KNQLLLHLEAEIIHLGIP 83 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~-V~~v~l~~~----kgqAFVEm~~~e~A~~ai 83 (118)
..+.++-+-..|+-.+-++|..+.+++-. |..++++++ +=.+++.|.+.++|..-.
T Consensus 11 ~~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy 71 (110)
T PF07576_consen 11 RRSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFY 71 (110)
T ss_pred CCceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHH
Confidence 34556667666677778888888888744 557777763 446999999999998774
No 144
>cd04489 ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of Escherichia coli exodeoxyribonuclease VII (ExoVII) large subunit. E. coli ExoVII is composed of two non-identical subunits. E. coli ExoVII is a single-strand-specific exonuclease which degrades ssDNA from both 3-prime and 5-prime ends. ExoVII plays a role in methyl-directed mismatch repair in vivo. ExoVII may also guard the genome from mutagenesis by removing excess ssDNA, since the build up of ssDNA would lead to SOS induction and PolIV-dependent mutagenesis.
Probab=61.08 E-value=7.2 Score=24.39 Aligned_cols=28 Identities=18% Similarity=0.274 Sum_probs=21.8
Q ss_pred CceeEEEEeccCceEEEeecchhhhhccc
Q psy9171 55 GRVTNVLVLKGKNQLLLHLEAEIIHLGIP 83 (118)
Q Consensus 55 G~V~~v~l~~~kgqAFVEm~~~e~A~~ai 83 (118)
|.|.+++. +.+|.||++.+|..+...++
T Consensus 6 g~v~~i~~-tk~g~~~~~L~D~~~~i~~~ 33 (78)
T cd04489 6 GEISNLKR-PSSGHLYFTLKDEDASIRCV 33 (78)
T ss_pred EEEecCEE-CCCcEEEEEEEeCCeEEEEE
Confidence 66777877 66789999999988666553
No 145
>PF11061 DUF2862: Protein of unknown function (DUF2862); InterPro: IPR021291 This family of proteins has no known function.
Probab=52.61 E-value=54 Score=21.36 Aligned_cols=41 Identities=15% Similarity=0.364 Sum_probs=30.5
Q ss_pred CCCCCcccHHHHHHhc-cCCCceeEEEEeccCce-EEEeecch
Q psy9171 36 RNIPNEVTEAEIIHLG-IPFGRVTNVLVLKGKNQ-LLLHLEAE 76 (118)
Q Consensus 36 ~NLP~~vte~dL~~Lf-~~fG~V~~v~l~~~kgq-AFVEm~~~ 76 (118)
.-+-..++++-+..|- .|.|.|..++|..++|. +.|+|+|-
T Consensus 10 ~~irDRi~~~l~~~l~~~~~g~I~~fKmtDG~giG~vv~~~ng 52 (64)
T PF11061_consen 10 SRIRDRIPKELVDKLGKNPIGTIKGFKMTDGSGIGVVVEFSNG 52 (64)
T ss_pred hhhhhhccHHHHHHhccCCcEEEEEEEEecCCcEEEEEEecCC
Confidence 5555667766666664 36999999999999986 47777764
No 146
>KOG0804|consensus
Probab=51.70 E-value=27 Score=30.82 Aligned_cols=55 Identities=11% Similarity=0.325 Sum_probs=46.4
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCC-CceeEEEEecc----CceEEEeecchhhhhcc
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPF-GRVTNVLVLKG----KNQLLLHLEAEIIHLGI 82 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~f-G~V~~v~l~~~----kgqAFVEm~~~e~A~~a 82 (118)
++|+.|.|=.+|.-.|-.||...+.+| -.|.+++++++ +=.++|.|.+.++|..-
T Consensus 72 ~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~F 131 (493)
T KOG0804|consen 72 SSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTF 131 (493)
T ss_pred CCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHH
Confidence 348899999999999999999988877 45678999864 34489999999999876
No 147
>KOG2193|consensus
Probab=49.91 E-value=0.54 Score=41.19 Aligned_cols=76 Identities=21% Similarity=0.146 Sum_probs=55.4
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc-Cce--EEEeecchhhhhcccccccccceeeCCeeeEEEecc
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG-KNQ--LLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISG 104 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~-kgq--AFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~ 104 (118)
.-|+.+-|||+|+...-+-|..|..+||+|.++..+.. .-+ -=+.+.+.+.+..++.. +|+..+....+.+.|--
T Consensus 78 qrsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~k--l~g~Q~en~~~k~~YiP 155 (584)
T KOG2193|consen 78 QRSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHK--LNGPQLENQHLKVGYIP 155 (584)
T ss_pred HHhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHh--hcchHhhhhhhhcccCc
Confidence 34778999999999999999999999999999877542 111 23455666677777643 67777777777666643
Q ss_pred c
Q psy9171 105 Y 105 (118)
Q Consensus 105 ~ 105 (118)
+
T Consensus 156 d 156 (584)
T KOG2193|consen 156 D 156 (584)
T ss_pred h
Confidence 3
No 148
>KOG4676|consensus
Probab=42.62 E-value=6.9 Score=34.06 Aligned_cols=54 Identities=7% Similarity=-0.082 Sum_probs=41.9
Q ss_pred CcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec--cCceEEEeecchhhhhccc
Q psy9171 30 SRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK--GKNQLLLHLEAEIIHLGIP 83 (118)
Q Consensus 30 S~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~--~kgqAFVEm~~~e~A~~ai 83 (118)
.+|+++++|+.++...++.++|..+|.|....+.. ....+-++|....+...|.
T Consensus 151 rRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~hal 206 (479)
T KOG4676|consen 151 RRTREVQSLISAAILPESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHAL 206 (479)
T ss_pred HhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHH
Confidence 47899999999999999999999999997766653 3455557776666655553
No 149
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=41.21 E-value=42 Score=23.86 Aligned_cols=40 Identities=18% Similarity=0.185 Sum_probs=34.2
Q ss_pred CCCCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec
Q psy9171 25 SDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK 64 (118)
Q Consensus 25 ~~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~ 64 (118)
.....+..+++.|++...++.++..+|..+|.+....+..
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (306)
T COG0724 220 LLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPP 259 (306)
T ss_pred ccccccceeeccccccccchhHHHHhccccccceeeeccC
Confidence 3346678899999999999999999999999997776654
No 150
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=39.25 E-value=29 Score=27.11 Aligned_cols=36 Identities=25% Similarity=0.444 Sum_probs=28.4
Q ss_pred CCcEEEeCCCCCcccHHHHHHhcc--CCCceeEEEEec
Q psy9171 29 PSRVIHIRNIPNEVTEAEIIHLGI--PFGRVTNVLVLK 64 (118)
Q Consensus 29 PS~vL~V~NLP~~vte~dL~~Lf~--~fG~V~~v~l~~ 64 (118)
..+.+.|+|||+.++..-|..++. .||.+.-+.++.
T Consensus 96 ~~~~~vv~NlPy~is~~il~~ll~~~~~g~~~~~l~vq 133 (262)
T PF00398_consen 96 NQPLLVVGNLPYNISSPILRKLLELYRFGRVRMVLMVQ 133 (262)
T ss_dssp SSEEEEEEEETGTGHHHHHHHHHHHGGGCEEEEEEEEE
T ss_pred CCceEEEEEecccchHHHHHHHhhcccccccceEEEEe
Confidence 356899999999999999988875 677766666653
No 151
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=36.60 E-value=1.1e+02 Score=19.72 Aligned_cols=54 Identities=4% Similarity=-0.132 Sum_probs=39.8
Q ss_pred cccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeE
Q psy9171 41 EVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQV 99 (118)
Q Consensus 41 ~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~ 99 (118)
+++-+|+..-+-.|+- -++..++.-=||-|.|..+|.+|... .++..+.+-++.
T Consensus 11 ~~~v~d~K~~Lr~y~~---~~I~~d~tGfYIvF~~~~Ea~rC~~~--~~~~~~f~y~m~ 64 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW---DRIRDDRTGFYIVFNDSKEAERCFRA--EDGTLFFTYRMQ 64 (66)
T ss_pred CccHHHHHHHHhcCCc---ceEEecCCEEEEEECChHHHHHHHHh--cCCCEEEEEEEE
Confidence 6788999999999986 33334555569999999999999643 566666655543
No 152
>COG4691 StbC Plasmid stability protein [General function prediction only]
Probab=33.10 E-value=16 Score=24.69 Aligned_cols=12 Identities=33% Similarity=0.736 Sum_probs=9.8
Q ss_pred EEEeCCCCCccc
Q psy9171 32 VIHIRNIPNEVT 43 (118)
Q Consensus 32 vL~V~NLP~~vt 43 (118)
.|+|||||+++.
T Consensus 3 ~ltiRNL~d~l~ 14 (80)
T COG4691 3 NLTIRNLPDGLK 14 (80)
T ss_pred cceeecCCHHHH
Confidence 489999998764
No 153
>KOG4008|consensus
Probab=32.61 E-value=40 Score=27.47 Aligned_cols=41 Identities=17% Similarity=0.307 Sum_probs=32.7
Q ss_pred CCCCCCCCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEE
Q psy9171 21 DRQKSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLV 62 (118)
Q Consensus 21 ~~~~~~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l 62 (118)
.+.+++ +-.+.||+-|+|.-+|++-|..+.++-|-+..+..
T Consensus 32 ke~s~~-~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y 72 (261)
T KOG4008|consen 32 KEHSNS-NEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLY 72 (261)
T ss_pred cccccc-ccccceeeecccccccHHHHHHHHHHhhhhhheec
Confidence 344566 67889999999999999999999999886654443
No 154
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=31.84 E-value=27 Score=28.29 Aligned_cols=36 Identities=8% Similarity=0.124 Sum_probs=28.1
Q ss_pred CcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc
Q psy9171 30 SRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG 65 (118)
Q Consensus 30 S~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~ 65 (118)
....-|+|||+.+|..-+..|+...-.+....++-+
T Consensus 95 ~~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M~Q 130 (259)
T COG0030 95 QPYKVVANLPYNISSPILFKLLEEKFIIQDMVLMVQ 130 (259)
T ss_pred CCCEEEEcCCCcccHHHHHHHHhccCccceEEEEeH
Confidence 456789999999999999999888777655555433
No 155
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=30.80 E-value=32 Score=28.77 Aligned_cols=52 Identities=17% Similarity=0.346 Sum_probs=42.0
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccC-------------ceEEEeecchhhh
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGK-------------NQLLLHLEAEIIH 79 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~k-------------gqAFVEm~~~e~A 79 (118)
--+|-|.+.|+..+++=.+...-|..||+|..+.++.+. .--++-|=+.+.+
T Consensus 13 YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~C 77 (309)
T PF10567_consen 13 YRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREIC 77 (309)
T ss_pred ceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHH
Confidence 346779999999999999999999999999999999754 2246666666555
No 156
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=30.14 E-value=50 Score=22.97 Aligned_cols=60 Identities=18% Similarity=0.102 Sum_probs=40.7
Q ss_pred CCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEe
Q psy9171 38 IPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLI 102 (118)
Q Consensus 38 LP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~ 102 (118)
++...-+..+..+....|.+.=..+ +.+..+++|++++++..++. ..+-.++|..+.+.-
T Consensus 29 ~~~~~l~~~l~~~W~~~~~~~i~~l--~~~~fl~~F~~~~d~~~vl~---~~p~~~~~~~~~l~~ 88 (153)
T PF14111_consen 29 ISLSALEQELAKIWKLKGGVKIRDL--GDNLFLFQFESEEDRQRVLK---GGPWNFNGHFLILQR 88 (153)
T ss_pred CCHHHHHHHHHHHhCCCCcEEEEEe--CCCeEEEEEEeccceeEEEe---cccccccccchhhhh
Confidence 3344556677777777775433332 57999999999999999964 346667776655543
No 157
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=30.14 E-value=64 Score=24.90 Aligned_cols=32 Identities=19% Similarity=0.185 Sum_probs=25.7
Q ss_pred EEEeCCCCCcccHHHHHHhccCCCceeEEEEe
Q psy9171 32 VIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVL 63 (118)
Q Consensus 32 vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~ 63 (118)
.+.|+|+|+.++..-+..++..+|...-+.++
T Consensus 96 ~~vvsNlPy~i~~~il~~ll~~~~~~~~~~~~ 127 (253)
T TIGR00755 96 LKVVSNLPYNISSPLIFKLLEKPKFRLAVLMV 127 (253)
T ss_pred ceEEEcCChhhHHHHHHHHhccCCCceEEEEe
Confidence 47799999999999999999877765555444
No 158
>PF11173 DUF2960: Protein of unknown function (DUF2960); InterPro: IPR021343 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=26.80 E-value=37 Score=23.03 Aligned_cols=19 Identities=11% Similarity=-0.153 Sum_probs=15.9
Q ss_pred eeeEEEeccccchHHHHHh
Q psy9171 96 KNQVSLISGYRNRQSAALM 114 (118)
Q Consensus 96 r~v~V~~S~~~~~~~~~~~ 114 (118)
|.|.|+|-+|+++.||+.+
T Consensus 14 K~i~Fsydk~h~i~EAvAa 32 (79)
T PF11173_consen 14 KEINFSYDKHHDIYEAVAA 32 (79)
T ss_pred eEEechHHhhcCHHHHHHH
Confidence 5788888899999999854
No 159
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=25.75 E-value=44 Score=26.33 Aligned_cols=32 Identities=19% Similarity=0.322 Sum_probs=22.5
Q ss_pred cEEEeCCCCCcccHHHHHHhccC-CCceeEEEEe
Q psy9171 31 RVIHIRNIPNEVTEAEIIHLGIP-FGRVTNVLVL 63 (118)
Q Consensus 31 ~vL~V~NLP~~vte~dL~~Lf~~-fG~V~~v~l~ 63 (118)
....|+|+|+.++..-|..+... +| +..+.++
T Consensus 106 ~~~vv~NlPY~iss~ii~~~l~~~~~-~~~~~l~ 138 (272)
T PRK00274 106 PLKVVANLPYNITTPLLFHLLEERDP-IRDMVVM 138 (272)
T ss_pred cceEEEeCCccchHHHHHHHHhcCCC-CCeeEEE
Confidence 36789999999998888887754 44 3334443
No 160
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=25.65 E-value=41 Score=27.28 Aligned_cols=31 Identities=10% Similarity=0.232 Sum_probs=23.8
Q ss_pred EEeCCCCCcccHHHHHHhccCCCceeEEEEe
Q psy9171 33 IHIRNIPNEVTEAEIIHLGIPFGRVTNVLVL 63 (118)
Q Consensus 33 L~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~ 63 (118)
+.|.|||+.++...+..+.+....+....++
T Consensus 104 ~VvaNlPY~Istpil~~ll~~~~~~~~~vlm 134 (294)
T PTZ00338 104 VCVANVPYQISSPLVFKLLAHRPLFRCAVLM 134 (294)
T ss_pred EEEecCCcccCcHHHHHHHhcCCCCceeeee
Confidence 6689999999999999888665555555444
No 161
>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function.
Probab=25.61 E-value=1.5e+02 Score=21.25 Aligned_cols=41 Identities=12% Similarity=0.159 Sum_probs=29.5
Q ss_pred HHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeee
Q psy9171 47 IIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQ 98 (118)
Q Consensus 47 L~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v 98 (118)
|...|.+.|--..+.-. ++++.+.|.+-+ ..|.++|+|+++
T Consensus 32 l~~~L~~~Giev~l~~~--------~l~~~~~~~~~~---~S~~I~inG~pi 72 (120)
T PF10865_consen 32 LAPVLAPLGIEVRLEEI--------ELDEEEFARQPL---ESPTIRINGRPI 72 (120)
T ss_pred HHHHHHhCCcEEEEEEE--------ECChHHHhhccc---CCCeeeECCEeh
Confidence 35568899976555543 677777776663 367889999998
No 162
>PF03544 TonB_C: Gram-negative bacterial TonB protein C-terminal; InterPro: IPR006260 The sequences in this set all contain a conserved C-terminal domain which is characteristic of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria []. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetitive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to span the periplasm. Iron is essential for growth in both bacteria and mammals. Controlling the amount of free iron in solution is often used as a tactic by hosts to limit invasion of pathogenic microbes; binding iron tightly within protein molecules can accomplish this. Some bacteria express surface receptors to capture eukaryotic iron-binding compounds, while others have evolved siderophores to scavenge iron from iron-binding host proteins []. The absence of free iron molecules in the surrounding environment triggers transcription of gene clusters that encode both siderophore-synthesis ezymes, and receptors that recognise iron-bound siderophores []. An example of the latter is Escherichia coli fepA, which resides in the outer envelope and captures iron-bound enterobactin []. To complete transport of bound iron across the inner membrane, a second receptor complex is needed. The major component of this is tonB, a 27kDa protein that facilitates energy transfer from the proton motive force to outer receptors. B-12 and colicin receptors also make use of the tonB system to drive active transport at the outer membrane.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016020 membrane, 0030288 outer membrane-bounded periplasmic space; PDB: 1U07_B 1IHR_A 2GRX_C 2GSK_B 1QXX_A 1XX3_A 2K9K_A.
Probab=25.45 E-value=78 Score=19.38 Aligned_cols=47 Identities=19% Similarity=0.053 Sum_probs=27.8
Q ss_pred cCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEe
Q psy9171 52 IPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLI 102 (118)
Q Consensus 52 ~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~ 102 (118)
.+=|.|.++.++..-+.. .=.++|..++....-.+...+|+++.+.+
T Consensus 25 ~~~G~v~~~~v~~s~~~~----~l~~~a~~~v~~~~~~p~~~~g~~~~~~~ 71 (79)
T PF03544_consen 25 DPDGRVSDVRVIQSSGPP----ILDEAALRAVKKWRFKPAPKNGKPVKVTY 71 (79)
T ss_dssp ETTTEEEEEEEEEESSSS----CSHHHHHHHHCC-EE-TT--CCEECEEEE
T ss_pred eCCCCEEEEEEEEccCHH----HHHHHHHHHHHhCCCCCCCcCCEEEEEEE
Confidence 466899999888755533 12345666655444557777888776665
No 163
>KOG3447|consensus
Probab=24.58 E-value=69 Score=24.02 Aligned_cols=37 Identities=16% Similarity=0.336 Sum_probs=29.2
Q ss_pred CCCCCCcEEEeCCCCCccc---HHHHHHhccCCCceeEEE
Q psy9171 25 SDFKPSRVIHIRNIPNEVT---EAEIIHLGIPFGRVTNVL 61 (118)
Q Consensus 25 ~~~~PS~vL~V~NLP~~vt---e~dL~~Lf~~fG~V~~v~ 61 (118)
+-|.-+.++.||.||..-| ..++.++.-+||+|.+=.
T Consensus 56 ~~c~vGDtVLir~lp~r~t~~V~H~v~~VVfk~G~IidPv 95 (150)
T KOG3447|consen 56 QQCTVGDTVLIRALPVRRTKHVKHEVAEVVFKVGKIIDPV 95 (150)
T ss_pred hccccCCEEEEecCCcchhhhhhhhhHhheeecccccCCC
Confidence 3447788999999998655 567888889999987643
No 164
>KOG2318|consensus
Probab=24.41 E-value=86 Score=28.66 Aligned_cols=38 Identities=16% Similarity=0.261 Sum_probs=30.2
Q ss_pred CCCCcEEEeCCCCC-cccHHHHHHhc---cCCC-ceeEEEEec
Q psy9171 27 FKPSRVIHIRNIPN-EVTEAEIIHLG---IPFG-RVTNVLVLK 64 (118)
Q Consensus 27 ~~PS~vL~V~NLP~-~vte~dL~~Lf---~~fG-~V~~v~l~~ 64 (118)
..+++-|-|+|+.| .+.-.||..+| .|+| .|.+|.+.+
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYp 213 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYP 213 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEech
Confidence 35788899999999 58888998775 4555 888998864
No 165
>KOG2891|consensus
Probab=20.13 E-value=67 Score=27.20 Aligned_cols=34 Identities=26% Similarity=0.395 Sum_probs=27.3
Q ss_pred CcEEEeCCCCCc------------ccHHHHHHhccCCCceeEEEEe
Q psy9171 30 SRVIHIRNIPNE------------VTEAEIIHLGIPFGRVTNVLVL 63 (118)
Q Consensus 30 S~vL~V~NLP~~------------vte~dL~~Lf~~fG~V~~v~l~ 63 (118)
-.+||+-.||.. -+|+-|...|+.||.|.+|.+.
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 347999999963 3577789999999999988763
No 166
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=20.12 E-value=1e+02 Score=26.22 Aligned_cols=73 Identities=21% Similarity=0.241 Sum_probs=52.2
Q ss_pred CCcEEEeCCCCCcccHHHHHHhccCCCc-----eeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEec
Q psy9171 29 PSRVIHIRNIPNEVTEAEIIHLGIPFGR-----VTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLIS 103 (118)
Q Consensus 29 PS~vL~V~NLP~~vte~dL~~Lf~~fG~-----V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S 103 (118)
..+.-+.|||..+---+++..+-..+|. |.|+.++ +-|.-|.=+++...|...+.. -+|+-+.-|.+.++-|
T Consensus 120 Tg~~G~~RNLs~~EIv~Qv~~~~~~~~~~~~~~i~NVV~M-GMGEPl~N~dnV~~a~~i~~~--~~G~~ls~R~iTvSTs 196 (349)
T COG0820 120 TGQGGLNRNLSAGEIVEQVLLAAKALGEDFGRRISNVVFM-GMGEPLLNLDNVVKALEIIND--DEGLGLSKRRITVSTS 196 (349)
T ss_pred cccccceeccCHHHHHHHHHHHHHhcCccccceeeeEEEe-cCCchhhhHHHHHHHHHhhcC--cccccccceEEEEecC
Confidence 3555778888874444444444355555 7888886 457888889999999999865 4577787788888877
Q ss_pred c
Q psy9171 104 G 104 (118)
Q Consensus 104 ~ 104 (118)
+
T Consensus 197 G 197 (349)
T COG0820 197 G 197 (349)
T ss_pred C
Confidence 6
Done!