Query psy9171
Match_columns 118
No_of_seqs 110 out of 619
Neff 5.4
Searched_HMMs 29240
Date Fri Aug 16 20:41:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9171.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9171hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3r27_A HnRNP L, heterogeneous 99.9 1.4E-26 4.8E-31 160.3 8.4 85 24-108 15-99 (100)
2 2cq1_A PTB-like protein L; RRM 99.9 1.8E-24 6.2E-29 148.2 8.2 84 25-108 10-93 (101)
3 2ad9_A Polypyrimidine tract-bi 99.9 1.1E-24 3.9E-29 154.4 6.7 92 16-108 18-109 (119)
4 1x4d_A Matrin 3; structural ge 99.9 3.3E-24 1.1E-28 147.8 7.8 81 25-105 10-91 (102)
5 1wex_A Hypothetical protein (r 99.9 7.6E-24 2.6E-28 145.6 7.1 84 25-108 10-93 (104)
6 1sjq_A Polypyrimidine tract-bi 99.9 1.1E-23 3.7E-28 146.8 6.0 82 27-108 13-94 (105)
7 1x4f_A Matrin 3; structural ge 99.9 1.2E-23 4.1E-28 147.7 5.4 82 27-108 22-104 (112)
8 2lxi_A RNA-binding protein 10; 99.8 5E-21 1.7E-25 127.2 3.2 78 30-108 1-85 (91)
9 2ytc_A PRE-mRNA-splicing facto 99.8 6.5E-20 2.2E-24 118.2 7.8 75 28-104 10-85 (85)
10 1why_A Hypothetical protein ri 99.8 5.9E-20 2E-24 121.7 7.1 80 26-107 13-94 (97)
11 4fxv_A ELAV-like protein 1; RN 99.8 7E-20 2.4E-24 123.7 7.2 76 28-105 17-98 (99)
12 2cpj_A Non-POU domain-containi 99.8 1.1E-19 3.7E-24 120.8 7.6 79 27-107 12-90 (99)
13 2x1f_A MRNA 3'-END-processing 99.8 1.1E-19 3.6E-24 120.3 7.2 79 29-109 1-85 (96)
14 3mdf_A Peptidyl-prolyl CIS-tra 99.8 1.2E-19 4.1E-24 116.7 7.1 75 28-104 5-85 (85)
15 3s8s_A Histone-lysine N-methyl 99.8 2.9E-19 9.8E-24 123.1 8.7 77 28-106 4-86 (110)
16 2dgx_A KIAA0430 protein; RRM d 99.8 2.1E-19 7.1E-24 119.5 7.7 82 24-107 3-91 (96)
17 2e5h_A Zinc finger CCHC-type a 99.8 4.5E-19 1.5E-23 116.2 8.9 77 26-104 12-94 (94)
18 3bs9_A Nucleolysin TIA-1 isofo 99.8 2.2E-19 7.4E-24 115.9 6.8 77 28-106 4-86 (87)
19 2cq3_A RNA-binding protein 9; 99.8 7.5E-19 2.6E-23 117.3 9.4 81 25-107 10-94 (103)
20 2xnq_A Nuclear polyadenylated 99.8 3.6E-19 1.2E-23 119.2 7.9 80 25-108 17-97 (97)
21 1whw_A Hypothetical protein ri 99.8 3.1E-19 1.1E-23 118.1 7.2 80 27-108 5-90 (99)
22 2dnq_A RNA-binding protein 4B; 99.8 3.3E-19 1.1E-23 116.6 7.3 77 28-108 6-82 (90)
23 2div_A TRNA selenocysteine ass 99.8 2.8E-19 9.6E-24 118.4 7.0 83 24-108 3-96 (99)
24 2dgu_A Heterogeneous nuclear r 99.8 4.3E-19 1.5E-23 118.9 7.7 79 25-107 6-84 (103)
25 2cqi_A Nucleolysin TIAR; RNA r 99.8 6.5E-19 2.2E-23 117.6 8.5 80 26-107 11-94 (103)
26 2wbr_A GW182, gawky, LD47780P; 99.8 2.7E-19 9.2E-24 122.1 6.7 76 28-105 5-80 (89)
27 2cqb_A Peptidyl-prolyl CIS-tra 99.8 3.7E-19 1.3E-23 118.4 7.2 81 25-107 7-93 (102)
28 1x5t_A Splicing factor 3B subu 99.8 2.5E-19 8.6E-24 117.8 6.3 78 28-107 3-87 (96)
29 2dnz_A Probable RNA-binding pr 99.8 3.9E-19 1.3E-23 116.7 7.2 78 28-107 3-86 (95)
30 2la4_A Nuclear and cytoplasmic 99.8 1.5E-19 5.2E-24 120.3 5.2 77 28-106 25-101 (101)
31 2cqc_A Arginine/serine-rich sp 99.8 5.3E-19 1.8E-23 115.8 7.7 78 26-105 11-94 (95)
32 2dgt_A RNA-binding protein 30; 99.8 7.2E-19 2.5E-23 115.5 8.1 78 27-108 7-84 (92)
33 1nu4_A U1A RNA binding domain; 99.8 3.4E-19 1.2E-23 117.3 6.5 78 28-107 6-90 (97)
34 1x4g_A Nucleolysin TIAR; struc 99.8 3.9E-19 1.3E-23 120.2 6.9 78 28-107 23-100 (109)
35 3md1_A Nuclear and cytoplasmic 99.8 6.4E-19 2.2E-23 112.8 7.5 75 30-106 1-81 (83)
36 2cq2_A Hypothetical protein LO 99.8 1.7E-19 5.8E-24 127.2 5.1 79 25-105 20-105 (114)
37 2cq0_A Eukaryotic translation 99.8 1E-18 3.6E-23 116.6 8.6 78 28-107 13-96 (103)
38 2ywk_A Putative RNA-binding pr 99.8 4.3E-19 1.5E-23 116.4 6.6 76 28-105 14-94 (95)
39 2cpf_A RNA binding motif prote 99.8 4.9E-19 1.7E-23 117.0 6.9 79 28-108 3-90 (98)
40 4f25_A Polyadenylate-binding p 99.8 5E-19 1.7E-23 121.5 7.1 76 30-107 5-84 (115)
41 2jrs_A RNA-binding protein 39; 99.8 5.1E-19 1.7E-23 120.7 7.1 78 28-107 24-107 (108)
42 2do4_A Squamous cell carcinoma 99.8 1.1E-18 3.7E-23 115.9 8.2 78 28-107 15-97 (100)
43 2a3j_A U1 small nuclear ribonu 99.8 4.3E-19 1.5E-23 125.9 6.6 83 25-109 24-113 (127)
44 1whx_A Hypothetical protein ri 99.8 1.9E-19 6.5E-24 123.4 4.6 77 28-106 8-84 (111)
45 2lkz_A RNA-binding protein 5; 99.8 2.3E-19 7.9E-24 121.4 4.9 77 28-106 7-95 (95)
46 2jvo_A Nucleolar protein 3; nu 99.8 8E-19 2.7E-23 119.9 7.6 78 27-108 28-105 (108)
47 2cph_A RNA binding motif prote 99.8 6.4E-19 2.2E-23 117.8 6.9 80 27-108 12-99 (107)
48 2dgs_A DAZ-associated protein 99.8 1.4E-18 4.9E-23 115.2 8.3 79 26-107 6-90 (99)
49 2e5i_A Heterogeneous nuclear r 99.8 9.2E-19 3.2E-23 124.6 7.8 81 25-107 18-103 (124)
50 2cpx_A Hypothetical protein FL 99.8 5.5E-19 1.9E-23 119.7 6.3 93 13-107 8-106 (115)
51 1x5s_A Cold-inducible RNA-bind 99.8 4.8E-19 1.6E-23 117.8 5.8 81 25-107 7-93 (102)
52 2dnh_A Bruno-like 5, RNA bindi 99.8 1.3E-18 4.4E-23 116.2 7.6 78 28-107 13-98 (105)
53 3tyt_A Heterogeneous nuclear r 99.8 9.5E-19 3.3E-23 131.5 7.7 78 28-107 2-81 (205)
54 2d9p_A Polyadenylate-binding p 99.8 1.1E-18 3.9E-23 116.4 7.2 78 28-107 13-94 (103)
55 2khc_A Testis-specific RNP-typ 99.8 1.5E-18 5.2E-23 118.3 8.0 76 27-104 37-118 (118)
56 3ulh_A THO complex subunit 4; 99.8 1.4E-18 4.7E-23 116.5 7.6 78 25-104 24-106 (107)
57 1x4a_A Splicing factor, argini 99.8 2E-18 7E-23 116.4 8.4 79 27-107 19-100 (109)
58 1x4h_A RNA-binding protein 28; 99.8 1.4E-18 4.9E-23 116.8 7.5 79 27-107 12-102 (111)
59 2kvi_A Nuclear polyadenylated 99.8 4.6E-19 1.6E-23 117.7 4.8 79 26-108 6-85 (96)
60 2err_A Ataxin-2-binding protei 99.8 1.2E-18 4.2E-23 118.5 7.1 79 26-106 25-107 (109)
61 2cqh_A IGF-II mRNA-binding pro 99.8 4.3E-19 1.5E-23 116.5 4.6 78 28-107 6-84 (93)
62 2dgv_A HnRNP M, heterogeneous 99.8 9.3E-19 3.2E-23 114.2 6.1 78 28-107 6-87 (92)
63 3s7r_A Heterogeneous nuclear r 99.8 3.2E-18 1.1E-22 110.9 8.5 73 28-103 9-87 (87)
64 2dnm_A SRP46 splicing factor; 99.8 1.1E-18 3.9E-23 116.4 6.5 79 27-107 10-94 (103)
65 2dgo_A Cytotoxic granule-assoc 99.8 2.7E-18 9.2E-23 116.6 8.5 78 28-107 13-96 (115)
66 2cpd_A Apobec-1 stimulating pr 99.8 3E-18 1E-22 113.8 8.6 80 25-108 10-91 (99)
67 1p27_B RNA-binding protein 8A; 99.8 9.9E-19 3.4E-23 117.0 6.1 77 28-106 21-103 (106)
68 2diu_A KIAA0430 protein; struc 99.8 7.8E-19 2.7E-23 121.4 5.7 76 26-107 4-85 (96)
69 2la6_A RNA-binding protein FUS 99.8 1.8E-18 6.2E-23 114.9 7.2 78 25-104 8-99 (99)
70 2do0_A HnRNP M, heterogeneous 99.8 3.5E-18 1.2E-22 115.6 8.5 79 26-106 11-94 (114)
71 4a8x_A RNA-binding protein wit 99.8 1.9E-18 6.6E-23 111.4 6.9 77 28-106 2-85 (88)
72 1oo0_B CG8781-PA, drosophila Y 99.8 1.5E-18 5.1E-23 117.0 6.7 78 28-107 24-107 (110)
73 2dnp_A RNA-binding protein 14; 99.8 1.9E-18 6.4E-23 113.0 6.9 77 27-107 6-82 (90)
74 3zzy_A Polypyrimidine tract-bi 99.8 1.8E-18 6E-23 124.5 7.4 81 25-107 21-107 (130)
75 3lqv_A PRE-mRNA branch site pr 99.7 1.9E-18 6.6E-23 117.3 7.1 76 28-105 6-84 (115)
76 1x5u_A Splicing factor 3B subu 99.7 1.9E-18 6.5E-23 115.4 6.9 79 28-108 13-97 (105)
77 1p1t_A Cleavage stimulation fa 99.7 6.8E-19 2.3E-23 117.2 4.6 82 28-111 6-93 (104)
78 1wi8_A EIF-4B, eukaryotic tran 99.7 4.8E-18 1.6E-22 113.7 8.6 76 28-107 13-95 (104)
79 3ucg_A Polyadenylate-binding p 99.7 3.8E-18 1.3E-22 110.5 7.8 75 29-106 5-85 (89)
80 2i2y_A Fusion protein consists 99.7 9.5E-19 3.3E-23 124.1 5.4 82 25-108 68-150 (150)
81 1x4c_A Splicing factor, argini 99.7 4.1E-18 1.4E-22 115.4 8.2 77 28-107 13-94 (108)
82 2cpz_A CUG triplet repeat RNA- 99.7 2.9E-18 1E-22 116.6 7.5 80 26-107 21-106 (115)
83 1wf1_A RNA-binding protein RAL 99.7 3.4E-18 1.2E-22 115.7 7.6 78 25-106 22-100 (110)
84 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 4.1E-18 1.4E-22 118.2 8.2 75 27-103 60-140 (140)
85 2cqp_A RNA-binding protein 12; 99.7 1.3E-18 4.5E-23 114.9 5.4 79 26-106 11-95 (98)
86 1wf0_A TDP-43, TAR DNA-binding 99.7 4.8E-18 1.7E-22 110.6 8.1 76 28-107 3-79 (88)
87 2dng_A Eukaryotic translation 99.7 9.1E-18 3.1E-22 112.2 9.5 78 26-107 11-94 (103)
88 2cpi_A CCR4-NOT transcription 99.7 2E-18 6.8E-23 117.7 6.3 78 28-107 13-102 (111)
89 2ek1_A RNA-binding protein 12; 99.7 8.3E-19 2.8E-23 115.1 4.1 77 27-105 12-94 (95)
90 3d2w_A TAR DNA-binding protein 99.7 6.8E-18 2.3E-22 111.8 8.2 77 27-107 8-85 (89)
91 2fy1_A RNA-binding motif prote 99.7 3.5E-18 1.2E-22 117.8 6.8 79 28-108 5-88 (116)
92 1x4e_A RNA binding motif, sing 99.7 7.9E-19 2.7E-23 113.3 3.2 75 28-104 3-83 (85)
93 3ex7_B RNA-binding protein 8A; 99.7 2.9E-18 1E-22 118.0 6.2 79 26-106 18-102 (126)
94 2dhg_A TRNA selenocysteine ass 99.7 1.7E-18 6E-23 115.4 4.9 78 28-107 7-91 (104)
95 1u6f_A Tcubp1, RNA-binding pro 99.7 5.2E-18 1.8E-22 118.5 7.4 79 27-107 39-123 (139)
96 2dis_A Unnamed protein product 99.7 4E-18 1.4E-22 114.5 6.5 79 28-108 6-94 (109)
97 2cqd_A RNA-binding region cont 99.7 9.5E-18 3.2E-22 114.2 8.3 76 28-106 15-96 (116)
98 1s79_A Lupus LA protein; RRM, 99.7 3.6E-18 1.2E-22 116.5 5.7 75 28-105 9-88 (103)
99 2cpe_A RNA-binding protein EWS 99.7 4.8E-18 1.7E-22 115.0 6.2 78 28-107 13-104 (113)
100 2kxn_B Transformer-2 protein h 99.7 3.8E-18 1.3E-22 120.2 5.8 80 25-106 41-126 (129)
101 2fc9_A NCL protein; structure 99.7 1.3E-17 4.4E-22 110.9 8.0 75 28-107 13-92 (101)
102 2hzc_A Splicing factor U2AF 65 99.7 7.9E-18 2.7E-22 108.5 6.7 71 28-101 4-85 (87)
103 2j76_E EIF-4B, EIF4B, eukaryot 99.7 2.4E-18 8.3E-23 115.1 4.4 78 26-107 15-99 (100)
104 1wg1_A KIAA1579 protein, homol 99.7 8.5E-18 2.9E-22 109.9 6.9 76 28-106 3-78 (88)
105 2dgp_A Bruno-like 4, RNA bindi 99.7 2.7E-18 9.2E-23 114.9 4.4 80 28-109 11-99 (106)
106 2cpy_A RNA-binding protein 12; 99.7 1.4E-17 4.6E-22 114.0 8.0 80 28-110 13-98 (114)
107 2dh8_A DAZ-associated protein 99.7 4.5E-18 1.5E-22 113.8 5.5 78 27-107 13-96 (105)
108 3ns6_A Eukaryotic translation 99.7 2.1E-18 7.1E-23 115.8 3.8 77 28-106 4-93 (100)
109 1x5p_A Negative elongation fac 99.7 3.5E-17 1.2E-21 108.5 9.6 77 28-108 13-89 (97)
110 3egn_A RNA-binding protein 40; 99.7 3.1E-18 1.1E-22 120.6 4.7 89 17-107 32-131 (143)
111 2hvz_A Splicing factor, argini 99.7 2.1E-18 7.1E-23 114.7 3.6 75 32-108 2-77 (101)
112 1qm9_A Polypyrimidine tract-bi 99.7 7.2E-18 2.5E-22 122.5 6.6 100 5-106 92-197 (198)
113 2kt5_A RNA and export factor-b 99.7 1.5E-17 5E-22 114.7 7.8 79 26-106 31-114 (124)
114 1x4b_A Heterogeneous nuclear r 99.7 1.2E-17 4.2E-22 113.7 7.2 77 28-107 25-107 (116)
115 2dgw_A Probable RNA-binding pr 99.7 3E-17 1E-21 107.2 8.7 75 28-106 8-87 (91)
116 1sjr_A Polypyrimidine tract-bi 99.7 8.6E-18 2.9E-22 125.2 6.8 78 28-107 42-125 (164)
117 1fjc_A Nucleolin RBD2, protein 99.7 1.2E-17 3.9E-22 110.0 6.7 80 26-108 12-93 (96)
118 2e5j_A Methenyltetrahydrofolat 99.7 6.4E-18 2.2E-22 112.1 5.4 77 28-107 17-95 (97)
119 2cqg_A TDP-43, TAR DNA-binding 99.7 2E-17 7E-22 110.2 7.9 76 28-107 13-94 (103)
120 2adc_A Polypyrimidine tract-bi 99.7 1.7E-17 5.9E-22 124.6 8.4 100 5-106 123-228 (229)
121 1h2v_Z 20 kDa nuclear CAP bind 99.7 2E-17 6.8E-22 118.0 8.2 78 27-106 36-119 (156)
122 2jwn_A Embryonic polyadenylate 99.7 6.8E-18 2.3E-22 115.9 5.5 75 29-106 35-115 (124)
123 2nlw_A Eukaryotic translation 99.7 1.6E-17 5.3E-22 112.2 7.1 77 28-106 13-100 (105)
124 2rs2_A Musashi-1, RNA-binding 99.7 1.8E-17 6.2E-22 112.9 7.4 78 27-107 22-105 (109)
125 2cq4_A RNA binding motif prote 99.7 1.6E-17 5.3E-22 112.8 6.7 76 29-107 24-105 (114)
126 3n9u_C Cleavage and polyadenyl 99.7 1.2E-17 4E-22 121.5 6.5 80 29-110 54-141 (156)
127 2jvr_A Nucleolar protein 3; RN 99.7 1.2E-17 4E-22 116.2 6.0 77 28-106 26-105 (111)
128 2krb_A Eukaryotic translation 99.7 6.1E-18 2.1E-22 108.9 4.1 69 30-100 1-80 (81)
129 1rk8_A CG8781-PA, CG8781-PA pr 99.7 1.9E-17 6.4E-22 119.7 6.9 78 28-107 70-153 (165)
130 3md3_A Nuclear and cytoplasmic 99.7 5.1E-17 1.7E-21 113.2 8.9 78 25-104 82-165 (166)
131 2db1_A Heterogeneous nuclear r 99.7 3.9E-17 1.3E-21 112.9 8.1 81 28-111 15-103 (118)
132 1wel_A RNA-binding protein 12; 99.7 9.1E-18 3.1E-22 116.1 4.9 83 28-113 23-111 (124)
133 1fxl_A Paraneoplastic encephal 99.7 3.6E-17 1.2E-21 114.1 7.8 77 29-107 1-83 (167)
134 3p5t_L Cleavage and polyadenyl 99.7 4.4E-18 1.5E-22 111.7 2.8 73 32-106 3-83 (90)
135 2kn4_A Immunoglobulin G-bindin 99.7 2.9E-17 9.9E-22 116.7 7.2 79 26-106 66-150 (158)
136 1x5o_A RNA binding motif, sing 99.7 3E-17 1E-21 111.2 6.9 78 28-107 23-113 (114)
137 2e44_A Insulin-like growth fac 99.7 2.7E-17 9.2E-22 108.2 5.5 77 28-106 13-92 (96)
138 2e5g_A U6 snRNA-specific termi 99.7 8.2E-17 2.8E-21 106.1 7.7 76 28-106 6-82 (94)
139 1wg5_A Heterogeneous nuclear r 99.7 8.1E-17 2.8E-21 108.5 7.6 76 28-106 13-94 (104)
140 2m2b_A RNA-binding protein 10; 99.7 8E-18 2.7E-22 117.6 2.7 78 28-108 21-110 (131)
141 1uaw_A Mouse-musashi-1; RNP-ty 99.7 1.9E-17 6.6E-22 104.5 4.3 69 32-103 2-76 (77)
142 2ki2_A SS-DNA binding protein 99.7 7.3E-18 2.5E-22 109.8 1.9 75 31-108 2-82 (90)
143 3pgw_A U1-A; protein-RNA compl 99.7 8.5E-17 2.9E-21 122.7 8.0 77 26-104 203-281 (282)
144 2g4b_A Splicing factor U2AF 65 99.7 1.1E-16 3.7E-21 112.9 8.0 77 26-104 90-172 (172)
145 2xs2_A Deleted in azoospermia- 99.7 4.2E-17 1.4E-21 108.5 5.5 75 28-106 7-86 (102)
146 1b7f_A Protein (SXL-lethal pro 99.7 7E-17 2.4E-21 113.2 6.8 77 29-107 2-84 (168)
147 2mss_A Protein (musashi1); RNA 99.7 3E-17 1E-21 103.6 4.4 69 32-103 1-75 (75)
148 1wez_A HnRNP H', FTP-3, hetero 99.7 1E-16 3.6E-21 108.5 7.2 75 28-106 13-92 (102)
149 4f02_A Polyadenylate-binding p 99.7 1E-16 3.5E-21 119.2 7.8 81 27-109 12-98 (213)
150 2lmi_A GRSF-1, G-rich sequence 99.7 2.8E-17 9.6E-22 111.3 4.2 83 26-111 7-97 (107)
151 2hgl_A HNRPF protein, heteroge 99.7 5.8E-17 2E-21 116.2 5.9 81 28-111 42-130 (136)
152 2lea_A Serine/arginine-rich sp 99.7 2.8E-17 9.7E-22 116.3 4.2 78 28-107 45-128 (135)
153 1fj7_A Nucleolin RBD1, protein 99.7 1.5E-17 5.2E-22 110.5 2.6 77 27-107 14-96 (101)
154 2lcw_A RNA-binding protein FUS 99.5 4.6E-18 1.6E-22 116.0 0.0 79 28-108 5-97 (116)
155 1iqt_A AUF1, heterogeneous nuc 99.7 2E-17 6.9E-22 104.2 2.9 69 32-103 1-75 (75)
156 2bz2_A Negative elongation fac 99.7 8.1E-17 2.8E-21 112.4 6.1 80 28-111 37-116 (121)
157 3tyt_A Heterogeneous nuclear r 99.7 4E-17 1.4E-21 122.6 4.7 87 8-96 98-193 (205)
158 2yh0_A Splicing factor U2AF 65 99.7 1.4E-16 4.8E-21 114.6 7.4 79 28-108 112-196 (198)
159 2qfj_A FBP-interacting repress 99.7 1.4E-16 4.7E-21 116.0 7.0 78 28-107 123-206 (216)
160 3sde_A Paraspeckle component 1 99.7 1.9E-16 6.7E-21 121.1 7.8 77 28-106 20-96 (261)
161 1l3k_A Heterogeneous nuclear r 99.7 2E-16 7E-21 113.6 7.4 77 28-107 11-93 (196)
162 2fc8_A NCL protein; structure 99.7 2.9E-16 1E-20 104.2 7.6 76 27-107 12-93 (102)
163 3pgw_A U1-A; protein-RNA compl 99.7 2.6E-16 8.8E-21 120.0 8.2 79 27-107 6-91 (282)
164 2adc_A Polypyrimidine tract-bi 99.6 9.2E-17 3.2E-21 120.6 5.2 80 25-106 29-110 (229)
165 4f02_A Polyadenylate-binding p 99.6 2.6E-16 8.8E-21 117.0 7.2 77 29-107 102-182 (213)
166 3beg_B Splicing factor, argini 99.6 8.9E-17 3E-21 110.4 4.0 73 30-105 16-93 (115)
167 3md3_A Nuclear and cytoplasmic 99.6 2.4E-16 8.3E-21 109.7 6.1 75 31-107 1-80 (166)
168 1l3k_A Heterogeneous nuclear r 99.6 5.6E-16 1.9E-20 111.3 7.9 76 28-106 102-183 (196)
169 2dha_A FLJ20171 protein; RRM d 99.6 2.2E-16 7.4E-21 111.5 5.2 80 28-110 21-109 (123)
170 2f3j_A RNA and export factor b 99.6 3.3E-16 1.1E-20 115.7 6.3 79 26-106 84-167 (177)
171 2g4b_A Splicing factor U2AF 65 99.6 6.1E-16 2.1E-20 109.0 7.5 76 28-106 2-88 (172)
172 1fje_B Nucleolin RBD12, protei 99.6 7E-16 2.4E-20 109.5 7.8 77 28-107 97-175 (175)
173 3nmr_A Cugbp ELAV-like family 99.6 3.9E-16 1.3E-20 109.8 6.3 74 28-103 93-174 (175)
174 2pe8_A Splicing factor 45; RRM 99.6 7.3E-16 2.5E-20 105.7 7.5 76 28-105 6-93 (105)
175 3q2s_C Cleavage and polyadenyl 99.6 3.5E-16 1.2E-20 119.7 6.3 78 29-108 67-152 (229)
176 1b7f_A Protein (SXL-lethal pro 99.6 9E-16 3.1E-20 107.5 7.8 74 28-103 87-168 (168)
177 2dnn_A RNA-binding protein 12; 99.6 8.2E-16 2.8E-20 106.3 6.8 73 30-106 16-93 (109)
178 3tht_A Alkylated DNA repair pr 99.6 5.4E-16 1.8E-20 126.6 6.9 76 27-104 15-97 (345)
179 2cjk_A Nuclear polyadenylated 99.6 2.5E-16 8.7E-21 110.5 4.2 76 28-106 85-166 (167)
180 2yh0_A Splicing factor U2AF 65 99.6 1.2E-15 4E-20 109.7 7.8 76 28-106 2-88 (198)
181 2cjk_A Nuclear polyadenylated 99.6 5.6E-16 1.9E-20 108.7 5.9 75 29-107 2-82 (167)
182 2qfj_A FBP-interacting repress 99.6 5.4E-16 1.9E-20 112.8 5.5 78 28-107 26-109 (216)
183 1qm9_A Polypyrimidine tract-bi 99.6 3.7E-16 1.3E-20 113.4 4.4 75 30-106 3-79 (198)
184 1fxl_A Paraneoplastic encephal 99.6 1.1E-15 3.8E-20 106.5 6.4 74 28-103 86-167 (167)
185 3pgw_S U1-70K; protein-RNA com 99.6 1.2E-15 4.2E-20 126.7 7.7 77 28-106 100-182 (437)
186 2hgn_A Heterogeneous nuclear r 99.6 3.9E-16 1.4E-20 112.3 4.1 76 28-107 44-124 (139)
187 3u1l_A PRE-mRNA-splicing facto 99.6 8.3E-16 2.8E-20 120.1 6.0 78 28-107 132-230 (240)
188 3smz_A Protein raver-1, ribonu 99.6 3E-15 1E-19 114.2 9.0 80 26-107 180-265 (284)
189 3nmr_A Cugbp ELAV-like family 99.6 1E-15 3.5E-20 107.6 5.8 77 29-107 2-89 (175)
190 2hgm_A HNRPF protein, heteroge 99.6 1.2E-15 4.1E-20 108.4 6.1 73 28-104 40-119 (126)
191 3smz_A Protein raver-1, ribonu 99.6 3.2E-15 1.1E-19 114.0 8.3 76 28-106 20-95 (284)
192 2dnl_A Cytoplasmic polyadenyla 99.6 1.9E-15 6.5E-20 103.2 6.2 72 28-104 6-86 (114)
193 2dit_A HIV TAT specific factor 99.6 5.9E-15 2E-19 100.7 8.4 80 26-107 11-103 (112)
194 2ghp_A U4/U6 snRNA-associated 99.6 3.2E-15 1.1E-19 114.5 7.7 78 26-106 206-291 (292)
195 2voo_A Lupus LA protein; RNA-b 99.6 2.7E-15 9.3E-20 112.0 6.7 73 30-105 109-186 (193)
196 2ghp_A U4/U6 snRNA-associated 99.6 2.9E-15 9.8E-20 114.7 6.8 76 28-106 39-118 (292)
197 3v4m_A Splicing factor U2AF 65 99.6 3.9E-15 1.3E-19 102.0 5.8 76 27-104 2-95 (105)
198 2j8a_A Histone-lysine N-methyl 99.5 1.1E-14 3.8E-19 106.0 6.8 86 31-116 3-106 (136)
199 1fje_B Nucleolin RBD12, protei 99.5 2.3E-14 7.9E-19 101.6 6.4 76 28-106 11-91 (175)
200 3ue2_A Poly(U)-binding-splicin 99.5 4.8E-14 1.6E-18 98.9 6.1 76 28-105 18-108 (118)
201 3sde_A Paraspeckle component 1 99.4 1.3E-13 4.4E-18 105.4 6.7 77 28-106 94-179 (261)
202 2d9o_A DNAJ (HSP40) homolog, s 99.4 9.1E-13 3.1E-17 90.1 8.2 74 30-107 10-91 (100)
203 3s6e_A RNA-binding protein 39; 99.4 6.5E-13 2.2E-17 92.7 7.1 77 27-105 4-92 (114)
204 1jmt_A Splicing factor U2AF 35 99.4 1.3E-13 4.4E-18 94.0 1.4 67 35-103 20-103 (104)
205 1owx_A Lupus LA protein, SS-B, 99.3 2.6E-12 9E-17 91.4 6.3 79 27-105 15-95 (121)
206 2dnr_A Synaptojanin-1; RRM dom 99.2 5.8E-11 2E-15 81.2 7.8 75 26-105 3-85 (91)
207 3dxb_A Thioredoxin N-terminall 99.0 9.3E-10 3.2E-14 81.9 6.2 76 27-104 121-211 (222)
208 1ufw_A Synaptojanin 2; RNP dom 98.9 8.4E-10 2.9E-14 76.0 5.1 74 25-103 10-92 (95)
209 2l9w_A U4/U6 snRNA-associated- 98.6 1.3E-07 4.3E-12 67.1 6.3 71 29-101 20-95 (117)
210 1wey_A Calcipressin 1; structu 97.4 0.0002 6.9E-09 49.7 4.9 73 32-106 7-84 (104)
211 3pq1_A Poly(A) RNA polymerase; 97.2 0.0001 3.6E-09 62.2 2.1 54 31-85 54-108 (464)
212 2dhx_A Poly (ADP-ribose) polym 97.2 0.0016 5.5E-08 45.2 7.4 68 28-100 6-78 (104)
213 3ctr_A Poly(A)-specific ribonu 96.9 0.00085 2.9E-08 46.4 3.7 52 30-84 6-57 (101)
214 1whv_A Poly(A)-specific ribonu 96.5 0.0025 8.5E-08 44.0 3.7 52 30-84 16-67 (100)
215 1uw4_A UPF3X; nonsense mediate 96.1 0.01 3.5E-07 39.8 5.1 52 32-83 3-62 (91)
216 1wwh_A Nucleoporin 35, nucleop 93.9 0.16 5.5E-06 35.7 6.2 63 30-96 24-86 (119)
217 2i2y_A Fusion protein consists 93.9 0.019 6.6E-07 39.6 1.3 38 66-106 13-51 (150)
218 2l08_A Regulator of nonsense t 93.2 0.092 3.2E-06 35.7 3.8 56 28-83 7-70 (97)
219 3d45_A Poly(A)-specific ribonu 88.9 0.42 1.4E-05 40.3 4.4 53 30-85 440-492 (507)
220 2kn4_A Immunoglobulin G-bindin 82.8 0.34 1.2E-05 33.2 0.7 19 66-84 13-31 (158)
221 4f25_A Polyadenylate-binding p 79.9 0.36 1.2E-05 31.8 0.0 19 28-46 95-113 (115)
222 3p3d_A Nucleoporin 53; structu 76.9 0.99 3.4E-05 32.2 1.6 60 33-96 10-89 (132)
223 3uzu_A Ribosomal RNA small sub 46.6 6.2 0.00021 30.2 1.0 35 30-64 114-148 (279)
224 3ts2_A Protein LIN-28 homolog 40.3 11 0.00038 26.6 1.4 29 45-75 2-30 (148)
225 3fut_A Dimethyladenosine trans 31.5 17 0.00059 27.7 1.4 34 30-64 110-143 (271)
226 3tqs_A Ribosomal RNA small sub 30.4 14 0.00048 27.8 0.7 34 31-64 97-130 (255)
227 1i4w_A Mitochondrial replicati 29.5 32 0.0011 27.5 2.7 33 31-63 143-184 (353)
228 1qyr_A KSGA, high level kasuga 27.6 57 0.0019 24.3 3.7 33 31-63 91-123 (252)
229 1otj_A Alpha-ketoglutarate-dep 24.7 50 0.0017 24.5 2.9 26 31-58 43-68 (283)
230 2g0c_A ATP-dependent RNA helic 23.9 23 0.00077 21.4 0.6 59 41-104 12-75 (76)
231 1nx8_A CARC, carbapenem syntha 22.3 58 0.002 23.9 2.8 27 31-59 40-66 (273)
232 3ftd_A Dimethyladenosine trans 21.5 29 0.00098 25.8 0.9 34 31-64 96-129 (249)
233 3h87_C Putative uncharacterize 20.8 12 0.00043 23.9 -1.1 11 32-42 3-13 (73)
No 1
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.93 E-value=1.4e-26 Score=160.27 Aligned_cols=85 Identities=22% Similarity=0.259 Sum_probs=76.3
Q ss_pred CCCCCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEec
Q psy9171 24 KSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLIS 103 (118)
Q Consensus 24 ~~~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S 103 (118)
....+||++|||+|||+++||++|.++|++||.|.++++++.||+|||||++.++|.+|+.....+++.++||+|+|+||
T Consensus 15 ~~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S 94 (100)
T 3r27_A 15 PHKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYS 94 (100)
T ss_dssp --CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEEC
T ss_pred cccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEec
Confidence 35559999999999999999999999999999999999999999999999999999999976444467799999999999
Q ss_pred cccch
Q psy9171 104 GYRNR 108 (118)
Q Consensus 104 ~~~~~ 108 (118)
+++.+
T Consensus 95 ~~k~l 99 (100)
T 3r27_A 95 TSQKI 99 (100)
T ss_dssp SCSCC
T ss_pred ccccc
Confidence 98643
No 2
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.91 E-value=1.8e-24 Score=148.24 Aligned_cols=84 Identities=42% Similarity=0.578 Sum_probs=77.4
Q ss_pred CCCCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEecc
Q psy9171 25 SDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISG 104 (118)
Q Consensus 25 ~~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~ 104 (118)
...+|+++|||+|||+++||++|.++|++||.|.++.++++||+|||||++.++|..|+.....++..+.||+|+|.||+
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 89 (101)
T 2cq1_A 10 MDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSN 89 (101)
T ss_dssp CCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECS
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcC
Confidence 44589999999999999999999999999999999999999999999999999999998765567899999999999999
Q ss_pred ccch
Q psy9171 105 YRNR 108 (118)
Q Consensus 105 ~~~~ 108 (118)
.+..
T Consensus 90 ~~~~ 93 (101)
T 2cq1_A 90 HKEL 93 (101)
T ss_dssp CSSC
T ss_pred cccC
Confidence 8654
No 3
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.91 E-value=1.1e-24 Score=154.37 Aligned_cols=92 Identities=38% Similarity=0.537 Sum_probs=79.3
Q ss_pred eeeccCCCCCCCCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCC
Q psy9171 16 VQAKLDRQKSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKG 95 (118)
Q Consensus 16 ~~~~~~~~~~~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~G 95 (118)
-+++++.+... +|+++|||+|||+++||+||.++|++||.|.++.++++||+|||||++.++|..|+.....++..+.|
T Consensus 18 ~~~~~~~~~~~-~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~G 96 (119)
T 2ad9_A 18 GSHMGDSRSAG-VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRG 96 (119)
T ss_dssp ----CCTTSCS-SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCCCBTT
T ss_pred ccccccccccC-CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 46777765555 99999999999999999999999999999999999999999999999999999998753334689999
Q ss_pred eeeEEEeccccch
Q psy9171 96 KNQVSLISGYRNR 108 (118)
Q Consensus 96 r~v~V~~S~~~~~ 108 (118)
|+|+|.||+.+..
T Consensus 97 r~l~V~~a~~k~~ 109 (119)
T 2ad9_A 97 QPIYIQFSNHKEL 109 (119)
T ss_dssp BCCEEEECSSSSC
T ss_pred eEEEEEEccCCCC
Confidence 9999999988654
No 4
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.90 E-value=3.3e-24 Score=147.82 Aligned_cols=81 Identities=20% Similarity=0.236 Sum_probs=74.2
Q ss_pred CCCCCCcEEEeCCCCC-cccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEec
Q psy9171 25 SDFKPSRVIHIRNIPN-EVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLIS 103 (118)
Q Consensus 25 ~~~~PS~vL~V~NLP~-~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S 103 (118)
....|+++|||+|||+ ++||+||.++|++||.|.++.++++||+|||||++.++|..|+.....++..+.||+|+|+||
T Consensus 10 ~~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 89 (102)
T 1x4d_A 10 GRVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLS 89 (102)
T ss_dssp CCCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEE
T ss_pred CCCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEEC
Confidence 3447999999999999 999999999999999999999999999999999999999999976444567899999999999
Q ss_pred cc
Q psy9171 104 GY 105 (118)
Q Consensus 104 ~~ 105 (118)
+.
T Consensus 90 ~~ 91 (102)
T 1x4d_A 90 QK 91 (102)
T ss_dssp CC
T ss_pred CC
Confidence 84
No 5
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.89 E-value=7.6e-24 Score=145.61 Aligned_cols=84 Identities=19% Similarity=0.181 Sum_probs=76.3
Q ss_pred CCCCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEecc
Q psy9171 25 SDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISG 104 (118)
Q Consensus 25 ~~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~ 104 (118)
...+|+++|||+|||+++||++|.++|++||.|.++.++++||+|||||++.++|..|+.....++..+.||+|+|.||+
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~ 89 (104)
T 1wex_A 10 HKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYST 89 (104)
T ss_dssp CCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECS
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcc
Confidence 34589999999999999999999999999999999999999999999999999999998764445678999999999998
Q ss_pred ccch
Q psy9171 105 YRNR 108 (118)
Q Consensus 105 ~~~~ 108 (118)
.+.+
T Consensus 90 ~~~~ 93 (104)
T 1wex_A 90 SKRI 93 (104)
T ss_dssp SSSC
T ss_pred Cccc
Confidence 8654
No 6
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=1.1e-23 Score=146.75 Aligned_cols=82 Identities=41% Similarity=0.591 Sum_probs=75.4
Q ss_pred CCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEecccc
Q psy9171 27 FKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGYR 106 (118)
Q Consensus 27 ~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~~ 106 (118)
-+|+.+|||+|||+++||+||.++|++||.|.++.++++||+|||||++.++|..|+.....++..+.||+|+|.||+.+
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~ 92 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHK 92 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCC
Confidence 37899999999999999999999999999999999999999999999999999999975444578999999999999886
Q ss_pred ch
Q psy9171 107 NR 108 (118)
Q Consensus 107 ~~ 108 (118)
..
T Consensus 93 ~~ 94 (105)
T 1sjq_A 93 EL 94 (105)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 7
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.88 E-value=1.2e-23 Score=147.73 Aligned_cols=82 Identities=20% Similarity=0.398 Sum_probs=75.2
Q ss_pred CCCCcEEEeCCCCCc-ccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEeccc
Q psy9171 27 FKPSRVIHIRNIPNE-VTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGY 105 (118)
Q Consensus 27 ~~PS~vL~V~NLP~~-vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~ 105 (118)
.+|+++|||+|||++ +||+||.++|++||.|.++.+++.||+|||||++.++|..|+.....++..+.||+|+|+||+.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 101 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEK 101 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECS
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECcc
Confidence 378999999999998 9999999999999999999999999999999999999999997644567889999999999986
Q ss_pred cch
Q psy9171 106 RNR 108 (118)
Q Consensus 106 ~~~ 108 (118)
+.+
T Consensus 102 ~~~ 104 (112)
T 1x4f_A 102 YKK 104 (112)
T ss_dssp CSS
T ss_pred ccc
Confidence 543
No 8
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.81 E-value=5e-21 Score=127.21 Aligned_cols=78 Identities=14% Similarity=0.152 Sum_probs=69.3
Q ss_pred CcEEEeCCCCCcccHHHHHHhccCCC-ceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEEe
Q psy9171 30 SRVIHIRNIPNEVTEAEIIHLGIPFG-RVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLI 102 (118)
Q Consensus 30 S~vL~V~NLP~~vte~dL~~Lf~~fG-~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~ 102 (118)
|++|||+|||+++||+||.++|++|| .|.+++++++ ||+|||+|++.++|..|+.. ..|+..+.||+|.|.|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~-~~~~~~~~gr~i~V~~ 79 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEA-NQHSLNILGQKVSMHY 79 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHT-TTTEEEETTEEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHh-cCCCeEECCEEEEEEE
Confidence 67999999999999999999999999 8999998753 79999999999999999853 2368899999999999
Q ss_pred ccccch
Q psy9171 103 SGYRNR 108 (118)
Q Consensus 103 S~~~~~ 108 (118)
|+.+..
T Consensus 80 a~~~~~ 85 (91)
T 2lxi_A 80 SDPKPK 85 (91)
T ss_dssp CCSCCC
T ss_pred cCCCCC
Confidence 987654
No 9
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=6.5e-20 Score=118.20 Aligned_cols=75 Identities=12% Similarity=0.201 Sum_probs=70.9
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccc-cceeeCCeeeEEEecc
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVT-NVLVLKGKNQVSLISG 104 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~-n~~~i~Gr~v~V~~S~ 104 (118)
+++++|||+|||+++|+++|.++|++||.|.++.+.+.||+|||+|++.++|..|+.. + |+..+.|++|.|.||+
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~--l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEK--SFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHT--TTTTCEETTEECCEEECC
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHHHHHHHHH--hcCCeeECCCEEEEEecC
Confidence 6788999999999999999999999999999999999999999999999999999864 5 8999999999999985
No 10
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=5.9e-20 Score=121.72 Aligned_cols=80 Identities=10% Similarity=0.040 Sum_probs=74.3
Q ss_pred CCCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeC--CeeeEEEec
Q psy9171 26 DFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLK--GKNQVSLIS 103 (118)
Q Consensus 26 ~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~--Gr~v~V~~S 103 (118)
..+|+++|||+|||+++|+++|.++|++||.|.++.+.++|++|||+|++.++|..|+.. +|+..+. |++|.|.||
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~--l~g~~~~~~g~~l~V~~a 90 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAK--MRGFPLGGPDRRLRVDFA 90 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHH--HTTCBCSSSSCBCEEEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHH--HCCCEeCCCCcEEEEEEC
Confidence 347889999999999999999999999999999999999999999999999999999864 7899999 999999999
Q ss_pred cccc
Q psy9171 104 GYRN 107 (118)
Q Consensus 104 ~~~~ 107 (118)
+.+.
T Consensus 91 ~~~~ 94 (97)
T 1why_A 91 KSGP 94 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8754
No 11
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.80 E-value=7e-20 Score=123.68 Aligned_cols=76 Identities=13% Similarity=0.053 Sum_probs=69.2
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL 101 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~ 101 (118)
..+..|||+|||+++||++|.++|++||.|.++.++++ ||+|||+|++.++|..|+.. +|+..+.||+|.|.
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~--lng~~~~gr~l~V~ 94 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT--LNGLRLQSKTIKVS 94 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHH--HTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHH--hCCCEECCEEEEEE
Confidence 44568999999999999999999999999999999853 57999999999999999864 89999999999999
Q ss_pred eccc
Q psy9171 102 ISGY 105 (118)
Q Consensus 102 ~S~~ 105 (118)
||+-
T Consensus 95 ~AkP 98 (99)
T 4fxv_A 95 YARP 98 (99)
T ss_dssp ECCB
T ss_pred EeeC
Confidence 9974
No 12
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=1.1e-19 Score=120.82 Aligned_cols=79 Identities=20% Similarity=0.291 Sum_probs=74.1
Q ss_pred CCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEecccc
Q psy9171 27 FKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGYR 106 (118)
Q Consensus 27 ~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~~ 106 (118)
.+|+++|||+|||+++|+++|.++|++||.|.++.+.+.||+|||+|++.++|..|+.. +|+..+.|++|.|.+++.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~--l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVE--LDNMPLRGKQLRVRFACHS 89 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHH--HTTCCBTTBCCEEEESSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHH--hCCCEeCCceEEEEEcCCC
Confidence 47789999999999999999999999999999999999999999999999999999854 8899999999999999875
Q ss_pred c
Q psy9171 107 N 107 (118)
Q Consensus 107 ~ 107 (118)
.
T Consensus 90 ~ 90 (99)
T 2cpj_A 90 A 90 (99)
T ss_dssp S
T ss_pred C
Confidence 4
No 13
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.80 E-value=1.1e-19 Score=120.30 Aligned_cols=79 Identities=22% Similarity=0.205 Sum_probs=72.8
Q ss_pred CCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEEe
Q psy9171 29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLI 102 (118)
Q Consensus 29 PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~ 102 (118)
|+++|||+|||+++|+++|.++|++||.|.++.+..+ +|+|||+|++.++|..|+.. +|+..+.|++|.|.+
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~--l~g~~~~g~~l~V~~ 78 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRN--LNGYQLGSRFLKCGY 78 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHH--HTTCEETTEECEEEE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHH--hCCCeECCeEEEEEE
Confidence 7899999999999999999999999999999999854 78999999999999999854 889999999999999
Q ss_pred ccccchH
Q psy9171 103 SGYRNRQ 109 (118)
Q Consensus 103 S~~~~~~ 109 (118)
|+.+...
T Consensus 79 a~~~~~~ 85 (96)
T 2x1f_A 79 SSNSDIS 85 (96)
T ss_dssp CSCSSGG
T ss_pred cCCCCCC
Confidence 9886543
No 14
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.80 E-value=1.2e-19 Score=116.72 Aligned_cols=75 Identities=17% Similarity=0.199 Sum_probs=69.7
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL 101 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~ 101 (118)
+|+++|||+|||+++|+++|.++|++||.|.++.++.+ +|+|||+|++.++|..|+.. +|+..+.|++|.|.
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~--l~g~~~~g~~l~v~ 82 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN--MNESELFGRTIRVN 82 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHH--HTTCEETTEECEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHH--hCCCEECCcEEEEE
Confidence 68899999999999999999999999999999998643 78999999999999999854 88999999999999
Q ss_pred ecc
Q psy9171 102 ISG 104 (118)
Q Consensus 102 ~S~ 104 (118)
+|+
T Consensus 83 ~ak 85 (85)
T 3mdf_A 83 LAK 85 (85)
T ss_dssp ECC
T ss_pred EcC
Confidence 985
No 15
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.79 E-value=2.9e-19 Score=123.06 Aligned_cols=77 Identities=10% Similarity=0.052 Sum_probs=71.5
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL 101 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~ 101 (118)
+|+++|||+|||+++||++|.++|++||.|.++.++.+ ||+|||+|++.++|..|+.. +|+..+.||+|.|.
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~--lng~~~~gr~i~V~ 81 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKN--LHLTSVMGNIIHAQ 81 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH--HTTCEETTEECEEE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHH--hCCCEECCeEEEEE
Confidence 78999999999999999999999999999999999743 68999999999999999864 89999999999999
Q ss_pred ecccc
Q psy9171 102 ISGYR 106 (118)
Q Consensus 102 ~S~~~ 106 (118)
+|+..
T Consensus 82 ~a~~~ 86 (110)
T 3s8s_A 82 LDIKG 86 (110)
T ss_dssp ECSTT
T ss_pred ECCCC
Confidence 99764
No 16
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.1e-19 Score=119.54 Aligned_cols=82 Identities=11% Similarity=0.088 Sum_probs=74.1
Q ss_pred CCCCCCCcEEEeCCCCCcccHHHHH----HhccCCCceeEEEEecc---CceEEEeecchhhhhcccccccccceeeCCe
Q psy9171 24 KSDFKPSRVIHIRNIPNEVTEAEII----HLGIPFGRVTNVLVLKG---KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGK 96 (118)
Q Consensus 24 ~~~~~PS~vL~V~NLP~~vte~dL~----~Lf~~fG~V~~v~l~~~---kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr 96 (118)
+....++..|||+|||+++|+++|. ++|++||.|.++.++.+ |++|||+|++.++|..|+.. +|+..+.||
T Consensus 3 s~~~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~--l~g~~~~gr 80 (96)
T 2dgx_A 3 SGSSGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNS--LHRYKIGSK 80 (96)
T ss_dssp CCCCSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHH--HTTEEETTE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHH--hCCCEECCe
Confidence 3455677899999999999999999 99999999999999865 89999999999999999864 899999999
Q ss_pred eeEEEeccccc
Q psy9171 97 NQVSLISGYRN 107 (118)
Q Consensus 97 ~v~V~~S~~~~ 107 (118)
+|.|.+|+.+.
T Consensus 81 ~l~V~~a~~~~ 91 (96)
T 2dgx_A 81 KILVSLATGAS 91 (96)
T ss_dssp EEEEEECCCSS
T ss_pred EEEEEEcCCCC
Confidence 99999997654
No 17
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=4.5e-19 Score=116.15 Aligned_cols=77 Identities=16% Similarity=0.165 Sum_probs=70.5
Q ss_pred CCCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeE
Q psy9171 26 DFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQV 99 (118)
Q Consensus 26 ~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~ 99 (118)
..+++++|||+|||+++|+++|.++|++||.|.++.+..+ +++|||+|++.++|..|+.. +|+..+.|++|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~--l~g~~~~g~~l~ 89 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRA--INNKQLFGRVIK 89 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHH--TTTEEETTEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHH--cCCCeeCCcEEE
Confidence 3367889999999999999999999999999999999753 68999999999999999854 889999999999
Q ss_pred EEecc
Q psy9171 100 SLISG 104 (118)
Q Consensus 100 V~~S~ 104 (118)
|.||+
T Consensus 90 v~~ak 94 (94)
T 2e5h_A 90 ASIAI 94 (94)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99985
No 18
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.79 E-value=2.2e-19 Score=115.94 Aligned_cols=77 Identities=17% Similarity=0.143 Sum_probs=68.7
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL 101 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~ 101 (118)
+|+++|||+|||+++|+++|.++|++||.|.++.++.+ +|+|||+|++.++|..|+.. +|+..+.|++|.|.
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~--l~g~~~~g~~l~v~ 81 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ--MGGQWLGGRQIRTN 81 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH--HTTCEETTEECEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHH--cCCCEECCeEEEEE
Confidence 57889999999999999999999999999999999864 68999999999999999854 78999999999999
Q ss_pred ecccc
Q psy9171 102 ISGYR 106 (118)
Q Consensus 102 ~S~~~ 106 (118)
+|+.+
T Consensus 82 ~a~~k 86 (87)
T 3bs9_A 82 WATRK 86 (87)
T ss_dssp EEC--
T ss_pred ecCCC
Confidence 99764
No 19
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=7.5e-19 Score=117.26 Aligned_cols=81 Identities=15% Similarity=0.155 Sum_probs=73.9
Q ss_pred CCCCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc----CceEEEeecchhhhhcccccccccceeeCCeeeEE
Q psy9171 25 SDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG----KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVS 100 (118)
Q Consensus 25 ~~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~----kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V 100 (118)
....++++|||+|||+++|+++|.++|++||.|.++.++.+ +++|||+|++.++|..|+.. +|+..+.|++|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~--l~g~~~~g~~l~v 87 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREK--LHGTVVEGRKIEV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHH--HTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHH--hCCCEECCEEEEE
Confidence 44477899999999999999999999999999999999865 78999999999999999854 7899999999999
Q ss_pred Eeccccc
Q psy9171 101 LISGYRN 107 (118)
Q Consensus 101 ~~S~~~~ 107 (118)
.+++.+.
T Consensus 88 ~~a~~~~ 94 (103)
T 2cq3_A 88 NNATARV 94 (103)
T ss_dssp EECCSSC
T ss_pred EEcccCC
Confidence 9998764
No 20
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.78 E-value=3.6e-19 Score=119.18 Aligned_cols=80 Identities=13% Similarity=0.165 Sum_probs=72.1
Q ss_pred CCCCCCcEEEeCCCCC-cccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEec
Q psy9171 25 SDFKPSRVIHIRNIPN-EVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLIS 103 (118)
Q Consensus 25 ~~~~PS~vL~V~NLP~-~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S 103 (118)
...+|+++|||+|||+ ++|+++|.++|++||.|.++.+. +|+|||+|++.++|..|+.. +|+..+.|++|.|.+|
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~Ai~~--l~g~~~~g~~l~V~~a 92 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--NAFGFIQFDNPQSVRDAIEX--ESQEMNFGKKLILEVS 92 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--SSEEEEEESSHHHHHHHHHH--HTTSEETTEECEEEEC
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--CCEEEEEECCHHHHHHHHHH--cCCCEECCEEEEEEec
Confidence 4447899999999998 99999999999999999999984 89999999999999999864 8899999999999999
Q ss_pred cccch
Q psy9171 104 GYRNR 108 (118)
Q Consensus 104 ~~~~~ 108 (118)
+.++|
T Consensus 93 ~~~~r 97 (97)
T 2xnq_A 93 SSNAR 97 (97)
T ss_dssp CCCC-
T ss_pred CCCCC
Confidence 88764
No 21
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=3.1e-19 Score=118.14 Aligned_cols=80 Identities=14% Similarity=0.111 Sum_probs=73.4
Q ss_pred CCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEE
Q psy9171 27 FKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVS 100 (118)
Q Consensus 27 ~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V 100 (118)
..++++|||+|||+++|+++|.++|++||.|.++.++.+ +|+|||+|.+.++|..|+.. +|+..+.|++|.|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~--l~g~~~~g~~l~V 82 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAE--VDGQVFQGRMLHV 82 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHH--TTTEESSSCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHH--hCCCEECCcEEEE
Confidence 378999999999999999999999999999999999764 58999999999999999854 8999999999999
Q ss_pred Eeccccch
Q psy9171 101 LISGYRNR 108 (118)
Q Consensus 101 ~~S~~~~~ 108 (118)
.+++.+..
T Consensus 83 ~~a~~~~~ 90 (99)
T 1whw_A 83 LPSTIKKE 90 (99)
T ss_dssp EECCCCST
T ss_pred EEcCCCcc
Confidence 99987654
No 22
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=3.3e-19 Score=116.63 Aligned_cols=77 Identities=25% Similarity=0.249 Sum_probs=71.9
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEeccccc
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGYRN 107 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~~~ 107 (118)
+|+++|||+|||+++|+++|.++|++||.|.++.+. |++|||+|++.++|..|+.. +|+..+.|++|.|.+++.+.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--~g~afV~f~~~~~A~~A~~~--l~g~~~~g~~l~v~~a~~~~ 81 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--KNYGFVHIEDKTAAEDAIRN--LHHYKLHGVNINVEASKNKS 81 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--TTEEEEEESSHHHHHHHHHH--HTTCBCSSCBCEEECSSCCC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--CCEEEEEECCHHHHHHHHHH--hcCCccCCcEEEEEECCCCC
Confidence 789999999999999999999999999999999998 79999999999999999854 88999999999999998765
Q ss_pred h
Q psy9171 108 R 108 (118)
Q Consensus 108 ~ 108 (118)
.
T Consensus 82 ~ 82 (90)
T 2dnq_A 82 K 82 (90)
T ss_dssp C
T ss_pred C
Confidence 3
No 23
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=2.8e-19 Score=118.36 Aligned_cols=83 Identities=10% Similarity=0.032 Sum_probs=74.4
Q ss_pred CCCCCCCcEEEeCCCCCcccHHHHHHhccCCCcee-EEEEecc------CceEEEeecchhhhhcccccccccceeeCCe
Q psy9171 24 KSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVT-NVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGK 96 (118)
Q Consensus 24 ~~~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~-~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr 96 (118)
+.+..|+++|||+|||+++|+++|.++|++||.|. ++.++.+ +|+|||+|.+.++|..|+.. +|+..+.|+
T Consensus 3 s~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--l~g~~~~g~ 80 (99)
T 2div_A 3 SGSSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHK--INGKPLPGA 80 (99)
T ss_dssp CCCCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHT--TTTSEESSC
T ss_pred CCCCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHH--HcCCccCCC
Confidence 34458899999999999999999999999999999 9999864 48999999999999999854 889999999
Q ss_pred e----eEEEeccccch
Q psy9171 97 N----QVSLISGYRNR 108 (118)
Q Consensus 97 ~----v~V~~S~~~~~ 108 (118)
+ +.|.||+...+
T Consensus 81 ~~~~~l~v~~a~~~~~ 96 (99)
T 2div_A 81 TPAKRFKLNYATYSGP 96 (99)
T ss_dssp SSCEECCEEETTCCSS
T ss_pred CcceeEEEeecCCCCC
Confidence 9 99999987543
No 24
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.78 E-value=4.3e-19 Score=118.91 Aligned_cols=79 Identities=23% Similarity=0.252 Sum_probs=72.2
Q ss_pred CCCCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEecc
Q psy9171 25 SDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISG 104 (118)
Q Consensus 25 ~~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~ 104 (118)
+...|+++|||+|||+++|+++|.++|++||.|.++.++ +++|||+|++.++|..|+.. +|+..+.|++|.|.+++
T Consensus 6 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--~~~afV~f~~~~~a~~A~~~--l~g~~~~g~~l~v~~a~ 81 (103)
T 2dgu_A 6 SGMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--KDYAFIHFDERDGAVKAMEE--MNGKDLEGENIEIVFAK 81 (103)
T ss_dssp CCCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--SSCEEEEESSHHHHHHHHHH--HTTEEETTEEEEEEECC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--CCEEEEEeCCHHHHHHHHHH--HCCCccCCCEEEEEEcC
Confidence 455789999999999999999999999999999999987 57999999999999999864 88999999999999997
Q ss_pred ccc
Q psy9171 105 YRN 107 (118)
Q Consensus 105 ~~~ 107 (118)
.+.
T Consensus 82 ~~~ 84 (103)
T 2dgu_A 82 PPD 84 (103)
T ss_dssp CCC
T ss_pred CCc
Confidence 654
No 25
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=6.5e-19 Score=117.57 Aligned_cols=80 Identities=15% Similarity=0.098 Sum_probs=73.0
Q ss_pred CCCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec----cCceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171 26 DFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK----GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL 101 (118)
Q Consensus 26 ~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~----~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~ 101 (118)
...++++|||+|||+++|+++|.++|++||.|.++.++. .||+|||+|.+.++|..|+.. +|+..+.|++|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~--l~g~~~~g~~l~V~ 88 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAA--MNGRKILGKEVKVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHH--HTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHH--hCCCCcCCCeEEEE
Confidence 336789999999999999999999999999999999986 378999999999999999854 88999999999999
Q ss_pred eccccc
Q psy9171 102 ISGYRN 107 (118)
Q Consensus 102 ~S~~~~ 107 (118)
+++.+.
T Consensus 89 ~a~~~~ 94 (103)
T 2cqi_A 89 WATTPS 94 (103)
T ss_dssp ECCCTT
T ss_pred ECCCCc
Confidence 998754
No 26
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.78 E-value=2.7e-19 Score=122.14 Aligned_cols=76 Identities=11% Similarity=0.055 Sum_probs=71.0
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEeccc
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGY 105 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~ 105 (118)
..|--|||+||++++||++|.+||.+||+|.++.+...||+|||||.++++|..|+.. +|+..+.||+|++++|+-
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~--Ln~~~l~gr~I~V~~A~e 80 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQMA--LNNCVLANTTIFAESPSE 80 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHH--HTTEEETTEEEEEECCCH
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHHHH--hcCCEECCcEEEEEECCH
Confidence 3466799999999999999999999999999999999999999999999999999964 999999999999999943
No 27
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=3.7e-19 Score=118.36 Aligned_cols=81 Identities=16% Similarity=0.146 Sum_probs=73.4
Q ss_pred CCCCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeee
Q psy9171 25 SDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQ 98 (118)
Q Consensus 25 ~~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v 98 (118)
...+++++|||+|||+++|+++|.++|++||.|.++.++.+ +|+|||+|++.++|..|+.. +|+..+.|++|
T Consensus 7 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~--l~g~~~~g~~l 84 (102)
T 2cqb_A 7 GMATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN--MNESELFGRTI 84 (102)
T ss_dssp CSCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHH--HTTEEETTEEE
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHH--hCCCEECCcEE
Confidence 34478899999999999999999999999999999999753 78999999999999999854 78999999999
Q ss_pred EEEeccccc
Q psy9171 99 VSLISGYRN 107 (118)
Q Consensus 99 ~V~~S~~~~ 107 (118)
.|.+++.+.
T Consensus 85 ~V~~a~~~~ 93 (102)
T 2cqb_A 85 RVNLAKPMR 93 (102)
T ss_dssp EEEECCCCC
T ss_pred EEEeCCCCC
Confidence 999998754
No 28
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.5e-19 Score=117.76 Aligned_cols=78 Identities=14% Similarity=0.070 Sum_probs=71.8
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEE-EEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEE
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNV-LVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVS 100 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v-~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V 100 (118)
+|+++|||+|||+++|+++|.++|++||.|.++ .++.+ +|+|||+|++.++|..|+.. +|+..+.|++|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~--l~g~~~~g~~l~v 80 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA--MNGQYLCNRPITV 80 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHT--TTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHH--cCCCEECCEEEEE
Confidence 678999999999999999999999999999999 88764 78999999999999999864 8899999999999
Q ss_pred Eeccccc
Q psy9171 101 LISGYRN 107 (118)
Q Consensus 101 ~~S~~~~ 107 (118)
.+|+.+.
T Consensus 81 ~~a~~~~ 87 (96)
T 1x5t_A 81 SYAFKKD 87 (96)
T ss_dssp EESCCCC
T ss_pred EEecccC
Confidence 9997654
No 29
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=3.9e-19 Score=116.65 Aligned_cols=78 Identities=17% Similarity=0.133 Sum_probs=72.1
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL 101 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~ 101 (118)
+|+++|||+|||+++|+++|.++|++||.|.++.+..+ +++|||+|++.++|..|+.. +|+..+.|++|.|.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~--l~g~~~~g~~l~V~ 80 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ--LNGFELAGRPMRVG 80 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHH--HTTCCSSSSCCEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHH--hCCCeeCCcEEEEE
Confidence 67899999999999999999999999999999999864 67999999999999999864 88999999999999
Q ss_pred eccccc
Q psy9171 102 ISGYRN 107 (118)
Q Consensus 102 ~S~~~~ 107 (118)
+++.+.
T Consensus 81 ~a~~~~ 86 (95)
T 2dnz_A 81 HVTERL 86 (95)
T ss_dssp ESSCCC
T ss_pred Eccccc
Confidence 998754
No 30
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.78 E-value=1.5e-19 Score=120.28 Aligned_cols=77 Identities=19% Similarity=0.148 Sum_probs=72.0
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEecccc
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGYR 106 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~~ 106 (118)
+++++|||+|||+++|+++|.++|++||.|.++.+.+.||+|||+|++.++|..|+.. +|+..+.|++|.|.+|+.+
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~--l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVA--LANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHH--HTTCEETTEECCCCBCCCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHHH--hCCCeECCeEEEEEeccCC
Confidence 5578999999999999999999999999999999999999999999999999999864 8899999999999999753
No 31
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=5.3e-19 Score=115.76 Aligned_cols=78 Identities=12% Similarity=0.082 Sum_probs=71.2
Q ss_pred CCCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeE
Q psy9171 26 DFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQV 99 (118)
Q Consensus 26 ~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~ 99 (118)
..+|+++|||+|||+++|+++|.++|++||.|.++.++.+ +|+|||+|++.++|..|+.. +|+..+.|++|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~--l~g~~~~g~~l~ 88 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKER--ANGMELDGRRIR 88 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHH--HTTEEETTEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHH--hCCCEECCEEEE
Confidence 3378999999999999999999999999999999999743 67999999999999999864 789999999999
Q ss_pred EEeccc
Q psy9171 100 SLISGY 105 (118)
Q Consensus 100 V~~S~~ 105 (118)
|.+|+.
T Consensus 89 v~~a~~ 94 (95)
T 2cqc_A 89 VSGPSS 94 (95)
T ss_dssp EECCSC
T ss_pred EEecCC
Confidence 999964
No 32
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=7.2e-19 Score=115.46 Aligned_cols=78 Identities=23% Similarity=0.223 Sum_probs=71.7
Q ss_pred CCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEecccc
Q psy9171 27 FKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGYR 106 (118)
Q Consensus 27 ~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~~ 106 (118)
..++++|||+|||+++|+++|.++|++||.|.++.+. +++|||+|++.++|..|+.. +|+..+.|++|.|.+++.+
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--~~~afV~f~~~~~a~~A~~~--l~g~~~~g~~l~V~~a~~~ 82 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--KDYAFVHMERAEDAVEAIRG--LDNTEFQGKRMHVQLSTSR 82 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--SSEEEEEESCHHHHHHHHHH--HTTEEETTEEEEEEESSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--CCEEEEEECCHHHHHHHHHH--hCCCeeCCcEEEEEEccCC
Confidence 3788999999999999999999999999999999997 45999999999999999854 8899999999999999876
Q ss_pred ch
Q psy9171 107 NR 108 (118)
Q Consensus 107 ~~ 108 (118)
..
T Consensus 83 ~~ 84 (92)
T 2dgt_A 83 LR 84 (92)
T ss_dssp CS
T ss_pred CC
Confidence 53
No 33
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.78 E-value=3.4e-19 Score=117.34 Aligned_cols=78 Identities=14% Similarity=0.182 Sum_probs=72.4
Q ss_pred CCCcEEEeCCCCCcccHHHHH----HhccCCCceeEEEEec---cCceEEEeecchhhhhcccccccccceeeCCeeeEE
Q psy9171 28 KPSRVIHIRNIPNEVTEAEII----HLGIPFGRVTNVLVLK---GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVS 100 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~----~Lf~~fG~V~~v~l~~---~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V 100 (118)
+|+++|||+|||+++|+++|. ++|++||.|.++.+.. .+|+|||+|.+.++|..|+.. +|+..+.|+++.|
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~--l~g~~~~g~~l~v 83 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRS--MQGFPFYDKPMRI 83 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHH--HTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHH--hCCCEECCcEEEE
Confidence 789999999999999999999 9999999999999873 489999999999999999854 8899999999999
Q ss_pred Eeccccc
Q psy9171 101 LISGYRN 107 (118)
Q Consensus 101 ~~S~~~~ 107 (118)
.||+.++
T Consensus 84 ~~a~~~~ 90 (97)
T 1nu4_A 84 QYAKTDS 90 (97)
T ss_dssp EECSSCC
T ss_pred EEccCCC
Confidence 9998754
No 34
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=3.9e-19 Score=120.19 Aligned_cols=78 Identities=12% Similarity=0.107 Sum_probs=73.4
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEeccccc
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGYRN 107 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~~~ 107 (118)
+++++|||+|||+++|+++|..+|++||.|.++.+..++|+|||+|++.++|..|+.. +|+..+.|++|.|.+++.+.
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~--l~g~~~~g~~l~v~~a~~~~ 100 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVS--VNGTTIEGHVVKCYWGKESP 100 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHH--HTTCEETTEECEEECCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHH--cCCCEECCcEEEEEecCCCC
Confidence 6788999999999999999999999999999999999999999999999999999854 78999999999999998754
No 35
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.77 E-value=6.4e-19 Score=112.83 Aligned_cols=75 Identities=7% Similarity=-0.067 Sum_probs=68.9
Q ss_pred CcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEEec
Q psy9171 30 SRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLIS 103 (118)
Q Consensus 30 S~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S 103 (118)
+.+|||+|||+++|+++|.++|++||.|.++.++.+ +|+|||+|++.++|..|+.. +|+..+.|++|.|.+|
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~--l~g~~~~g~~l~v~~a 78 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDS--MQGQDLNGRPLRINWA 78 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHH--HTTCEETTEECEEEEC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHH--hcCCeeCCcEEEEEec
Confidence 357999999999999999999999999999999854 78999999999999999854 7899999999999999
Q ss_pred ccc
Q psy9171 104 GYR 106 (118)
Q Consensus 104 ~~~ 106 (118)
+.+
T Consensus 79 ~~~ 81 (83)
T 3md1_A 79 AKL 81 (83)
T ss_dssp CCC
T ss_pred CcC
Confidence 764
No 36
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.7e-19 Score=127.16 Aligned_cols=79 Identities=9% Similarity=-0.028 Sum_probs=72.8
Q ss_pred CCCCCCcEEEe--CCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceee-----CCee
Q psy9171 25 SDFKPSRVIHI--RNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVL-----KGKN 97 (118)
Q Consensus 25 ~~~~PS~vL~V--~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i-----~Gr~ 97 (118)
.+.+|+++||| +|||+++||++|.++|++||.|.++.+.++||+|||+|++.++|..|+.. +|+..+ .|++
T Consensus 20 ~~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~--lnG~~~~~~lg~g~~ 97 (114)
T 2cq2_A 20 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVT--LNGKEVVDDLGQKIT 97 (114)
T ss_dssp CCSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHH--TTTCEEECTTSCEEE
T ss_pred CCCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHH--hCCCEEccccCCCcE
Confidence 34489999999 77999999999999999999999999988999999999999999999864 899988 8999
Q ss_pred eEEEeccc
Q psy9171 98 QVSLISGY 105 (118)
Q Consensus 98 v~V~~S~~ 105 (118)
+++.|++.
T Consensus 98 l~v~~a~~ 105 (114)
T 2cq2_A 98 LYLNFVEK 105 (114)
T ss_dssp CEEEEESC
T ss_pred EEEEeccc
Confidence 99999975
No 37
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1e-18 Score=116.55 Aligned_cols=78 Identities=13% Similarity=0.138 Sum_probs=72.1
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL 101 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~ 101 (118)
.++++|||+|||+++|+++|.++|++||.|.++.++.+ +|+|||+|.+.++|..|+.. +|+..+.|++|.|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~--l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAG--VSGFGYDHLILNVE 90 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHH--TTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHH--cCCCeeCCcEEEEE
Confidence 67899999999999999999999999999999999854 57999999999999999864 88999999999999
Q ss_pred eccccc
Q psy9171 102 ISGYRN 107 (118)
Q Consensus 102 ~S~~~~ 107 (118)
+++.+.
T Consensus 91 ~a~~~~ 96 (103)
T 2cq0_A 91 WAKPST 96 (103)
T ss_dssp ESSCCC
T ss_pred ECCCCC
Confidence 998764
No 38
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.77 E-value=4.3e-19 Score=116.43 Aligned_cols=76 Identities=17% Similarity=0.080 Sum_probs=70.7
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc-----CceEEEeecchhhhhcccccccccceeeCCeeeEEEe
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG-----KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLI 102 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~-----kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~ 102 (118)
+++++|||+|||+++|+++|.++|++||.|.++.+..+ +|+|||+|++.++|..|+.. +|+..+.|++|.|.+
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~--l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIAL--LNGIRLYGRPINVSG 91 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHH--HTTCEETTEECEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHH--hCCCEECCCEEEEEE
Confidence 67899999999999999999999999999999999864 68999999999999999854 889999999999999
Q ss_pred ccc
Q psy9171 103 SGY 105 (118)
Q Consensus 103 S~~ 105 (118)
|+.
T Consensus 92 a~~ 94 (95)
T 2ywk_A 92 PSS 94 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 974
No 39
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=4.9e-19 Score=116.97 Aligned_cols=79 Identities=13% Similarity=0.034 Sum_probs=71.9
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec---------cCceEEEeecchhhhhcccccccccceeeCCeee
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK---------GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQ 98 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~---------~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v 98 (118)
+|+++|||+|||+++|+++|.++|++||.|.++.+.. .+|+|||+|.+.++|..|+.. +|+..+.|++|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~--l~g~~~~g~~l 80 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQ--LQGHTVDGHKL 80 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHH--STTCEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHH--hCCCeeCCeEE
Confidence 6889999999999999999999999999999999984 257999999999999999854 88999999999
Q ss_pred EEEeccccch
Q psy9171 99 VSLISGYRNR 108 (118)
Q Consensus 99 ~V~~S~~~~~ 108 (118)
.|.+|+.+..
T Consensus 81 ~V~~a~~~~~ 90 (98)
T 2cpf_A 81 EVRISERATK 90 (98)
T ss_dssp EEECSSCSSC
T ss_pred EEEEccCCCC
Confidence 9999987643
No 40
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.77 E-value=5e-19 Score=121.51 Aligned_cols=76 Identities=17% Similarity=0.150 Sum_probs=69.6
Q ss_pred CcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc----CceEEEeecchhhhhcccccccccceeeCCeeeEEEeccc
Q psy9171 30 SRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG----KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGY 105 (118)
Q Consensus 30 S~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~----kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~ 105 (118)
+..|||+|||+++||++|.++|++||.|.++.++.+ ||+|||+|++.++|..|+.. +|+..+.||+|.|.+++.
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~--l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEK--MNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHH--HTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHH--cCCCEECCEEEEEEECCC
Confidence 557999999999999999999999999999999864 78999999999999999864 889999999999999876
Q ss_pred cc
Q psy9171 106 RN 107 (118)
Q Consensus 106 ~~ 107 (118)
+.
T Consensus 83 ~~ 84 (115)
T 4f25_A 83 RK 84 (115)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 41
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.77 E-value=5.1e-19 Score=120.70 Aligned_cols=78 Identities=14% Similarity=0.100 Sum_probs=71.7
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL 101 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~ 101 (118)
+++++|||+|||+++|+++|.++|++||.|.++.++.+ +|+|||+|.+.++|..|+.. +|+..+.||+|.|.
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~--l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ--LNGFELAGRPMKVG 101 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHH--HTTCCSSSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHH--cCCCEECCEEEEEE
Confidence 67889999999999999999999999999999999853 68999999999999999854 88999999999999
Q ss_pred eccccc
Q psy9171 102 ISGYRN 107 (118)
Q Consensus 102 ~S~~~~ 107 (118)
+|+.++
T Consensus 102 ~a~~k~ 107 (108)
T 2jrs_A 102 HVTERT 107 (108)
T ss_dssp CSCSSC
T ss_pred EcccCC
Confidence 998653
No 42
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.1e-18 Score=115.94 Aligned_cols=78 Identities=15% Similarity=0.151 Sum_probs=71.7
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc-----CceEEEeecchhhhhcccccccccceeeCCeeeEEEe
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG-----KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLI 102 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~-----kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~ 102 (118)
.++++|||+|||+++|+++|.++|++||.|.++.+..+ +|+|||+|++.++|..|+.. +|+..+.|++|.|.+
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~--l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMK--MDGMTIKENIIKVAI 92 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHH--HTTEESSSCEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHH--hCCCEECCEEEEEEE
Confidence 67889999999999999999999999999999999864 48999999999999999854 889999999999999
Q ss_pred ccccc
Q psy9171 103 SGYRN 107 (118)
Q Consensus 103 S~~~~ 107 (118)
|+.+.
T Consensus 93 a~~~~ 97 (100)
T 2do4_A 93 SNSGP 97 (100)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 97654
No 43
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.77 E-value=4.3e-19 Score=125.89 Aligned_cols=83 Identities=18% Similarity=0.197 Sum_probs=73.7
Q ss_pred CCCCCCcEEEeCCCCCcccHHHHH----HhccCCCceeEEEEec---cCceEEEeecchhhhhcccccccccceeeCCee
Q psy9171 25 SDFKPSRVIHIRNIPNEVTEAEII----HLGIPFGRVTNVLVLK---GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKN 97 (118)
Q Consensus 25 ~~~~PS~vL~V~NLP~~vte~dL~----~Lf~~fG~V~~v~l~~---~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~ 97 (118)
...+|+++|||+|||+++++++|. ++|++||.|.++.+.. .||+|||+|++.++|..|+.. +|+..+.||+
T Consensus 24 ~~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~--lng~~l~gr~ 101 (127)
T 2a3j_A 24 PHTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEA--FQGYPFQGNP 101 (127)
T ss_dssp CCCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHH--STTCCCTTSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHH--HCCCEeCCCE
Confidence 344789999999999999999875 6999999999998864 489999999999999999864 8999999999
Q ss_pred eEEEeccccchH
Q psy9171 98 QVSLISGYRNRQ 109 (118)
Q Consensus 98 v~V~~S~~~~~~ 109 (118)
|.|.||+.++-.
T Consensus 102 l~V~~a~~~~~~ 113 (127)
T 2a3j_A 102 LVITFSETPQSQ 113 (127)
T ss_dssp CEEEECCCCCHH
T ss_pred EEEEEccCcchh
Confidence 999999987643
No 44
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.9e-19 Score=123.38 Aligned_cols=77 Identities=16% Similarity=0.074 Sum_probs=71.6
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEecccc
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGYR 106 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~~ 106 (118)
.++++|||+|||+++|+++|.++|++||.|.++.+.+.|++|||+|++.++|..|+.. +|+..+.||+|.|.||+..
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~--l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRH--LAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHH--HTTCBSSSSBCEEEEEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHH--hCCCEECCeEEEEEECCCC
Confidence 3467999999999999999999999999999999999999999999999999999864 8999999999999999753
No 45
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.77 E-value=2.3e-19 Score=121.36 Aligned_cols=77 Identities=17% Similarity=0.181 Sum_probs=66.7
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCc--eeEEEEecc------CceEEEeecchhhhhcccccccccc----eeeCC
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGR--VTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNV----LVLKG 95 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~--V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~----~~i~G 95 (118)
..=.+|||+|||+++||++|.++|++||. +.+++++++ ||+|||+|.+.++|..|+.. +|+ ..|.|
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~--lng~~~~~~i~G 84 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQI--LQSLHPPLKIDG 84 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHH--HHSSSSCEEETT
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHH--hcCCCCCceECC
Confidence 44568999999999999999999999995 678988753 78999999999999999865 444 57999
Q ss_pred eeeEEEecccc
Q psy9171 96 KNQVSLISGYR 106 (118)
Q Consensus 96 r~v~V~~S~~~ 106 (118)
|+|.|.||+.+
T Consensus 85 r~i~V~~Akss 95 (95)
T 2lkz_A 85 KTIGVDFAKSA 95 (95)
T ss_dssp EEEEEEECCCC
T ss_pred EEEEEEEccCC
Confidence 99999999863
No 46
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.77 E-value=8e-19 Score=119.93 Aligned_cols=78 Identities=15% Similarity=0.154 Sum_probs=71.9
Q ss_pred CCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEecccc
Q psy9171 27 FKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGYR 106 (118)
Q Consensus 27 ~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~~ 106 (118)
..++++|||+|||+++|+++|.++|++||.|.++.+. ||+|||+|.+.++|..|+.. +|+..+.|++|.|.||+.+
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--kg~afV~f~~~~~A~~Ai~~--l~g~~~~g~~l~V~~a~~~ 103 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--NGFAFVEFEEAESAAKAIEE--VHGKSFANQPLEVVYSKLP 103 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--TTEEEEECSSHHHHHHHHHH--HTTCEETTEECEEESCSCC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--CCEEEEEECCHHHHHHHHHH--cCCCEECCeEEEEEEecCC
Confidence 3778999999999999999999999999999999998 89999999999999999854 8899999999999999876
Q ss_pred ch
Q psy9171 107 NR 108 (118)
Q Consensus 107 ~~ 108 (118)
..
T Consensus 104 ~~ 105 (108)
T 2jvo_A 104 AK 105 (108)
T ss_dssp C-
T ss_pred CC
Confidence 54
No 47
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=6.4e-19 Score=117.85 Aligned_cols=80 Identities=19% Similarity=0.125 Sum_probs=73.1
Q ss_pred CCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc-------CceEEEeecchhhhhcccccccc-cceeeCCeee
Q psy9171 27 FKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG-------KNQLLLHLEAEIIHLGIPFGRVT-NVLVLKGKNQ 98 (118)
Q Consensus 27 ~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~-------kgqAFVEm~~~e~A~~ai~~~~~-n~~~i~Gr~v 98 (118)
..++++|||+|||+++|+++|.++|++||.|.++.++.+ +|+|||+|.+.++|..|+.. + |+..+.|++|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~--l~~~~~~~g~~l 89 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNA--LCHSTHLYGRRL 89 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHH--HHTCCBSSSCBC
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHH--hccCCeECCCEE
Confidence 367899999999999999999999999999999999865 79999999999999999864 7 8999999999
Q ss_pred EEEeccccch
Q psy9171 99 VSLISGYRNR 108 (118)
Q Consensus 99 ~V~~S~~~~~ 108 (118)
.|.+|+.+..
T Consensus 90 ~v~~a~~~~~ 99 (107)
T 2cph_A 90 VLEWADSEVT 99 (107)
T ss_dssp EEEECCCCCC
T ss_pred EEEeCCCCCC
Confidence 9999987643
No 48
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.4e-18 Score=115.16 Aligned_cols=79 Identities=20% Similarity=0.160 Sum_probs=71.8
Q ss_pred CCCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeE
Q psy9171 26 DFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQV 99 (118)
Q Consensus 26 ~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~ 99 (118)
...++++|||+|||+++|+++|.++|++||.|.++.++.+ ||+|||+|++.++|..|+. +|+..+.|++|.
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~---~~~~~~~g~~l~ 82 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN---MHFHDIMGKKVE 82 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH---HCCCBSSSCBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH---hCCCEECCeEEE
Confidence 3378999999999999999999999999999999999853 7899999999999999983 689999999999
Q ss_pred EEeccccc
Q psy9171 100 SLISGYRN 107 (118)
Q Consensus 100 V~~S~~~~ 107 (118)
|.+++.+.
T Consensus 83 V~~a~~~~ 90 (99)
T 2dgs_A 83 VKRAEPRD 90 (99)
T ss_dssp EEECCCCC
T ss_pred EEECCCCc
Confidence 99997653
No 49
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.77 E-value=9.2e-19 Score=124.55 Aligned_cols=81 Identities=14% Similarity=0.124 Sum_probs=72.6
Q ss_pred CCCCCCcEE--EeCCCCCcccHHHHHHhccCCCceeEEEEeccCc-eEEEeecchhhhhcccccccccceeeCC--eeeE
Q psy9171 25 SDFKPSRVI--HIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKN-QLLLHLEAEIIHLGIPFGRVTNVLVLKG--KNQV 99 (118)
Q Consensus 25 ~~~~PS~vL--~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kg-qAFVEm~~~e~A~~ai~~~~~n~~~i~G--r~v~ 99 (118)
...+||++| ||+|||+.+|+++|.++|++||.|.++.+....| ||||||++.++|..|+.. +|+..|.| ++|+
T Consensus 18 ~~~~ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~--LnG~~i~g~~~~l~ 95 (124)
T 2e5i_A 18 DPSGGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAA--LNGADIYAGCCTLK 95 (124)
T ss_dssp CCCCCCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEESSSEEEEEEESSHHHHHHHHHH--HTTCCCBTTBSEEE
T ss_pred CCCCCCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHH--hCCCEecCCCeEEE
Confidence 344889995 5899999999999999999999999999987668 599999999999999865 99999988 6999
Q ss_pred EEeccccc
Q psy9171 100 SLISGYRN 107 (118)
Q Consensus 100 V~~S~~~~ 107 (118)
|+||+.++
T Consensus 96 V~~Ak~~~ 103 (124)
T 2e5i_A 96 IEYARPTR 103 (124)
T ss_dssp EECCSCSC
T ss_pred EEEecCCc
Confidence 99998875
No 50
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=5.5e-19 Score=119.74 Aligned_cols=93 Identities=17% Similarity=0.199 Sum_probs=78.4
Q ss_pred heeeeeccCCCCCCCCCCcEEEeCCCCCcccHHHHHHhccCCCce----eEEEEecc--CceEEEeecchhhhhcccccc
Q psy9171 13 VMVVQAKLDRQKSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRV----TNVLVLKG--KNQLLLHLEAEIIHLGIPFGR 86 (118)
Q Consensus 13 ~~~~~~~~~~~~~~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V----~~v~l~~~--kgqAFVEm~~~e~A~~ai~~~ 86 (118)
.+.+......+....+|+++|||+|||+++|+++|.++|++||.| ..+.+..+ +|+|||+|++.++|..|+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~- 86 (115)
T 2cpx_A 8 EEIRKIPMFSSYNPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHL- 86 (115)
T ss_dssp SSSCCCSCCCCCCCCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHH-
T ss_pred hhhhhcccccccCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHH-
Confidence 344555555555566889999999999999999999999999999 66666653 69999999999999999864
Q ss_pred cccceeeCCeeeEEEeccccc
Q psy9171 87 VTNVLVLKGKNQVSLISGYRN 107 (118)
Q Consensus 87 ~~n~~~i~Gr~v~V~~S~~~~ 107 (118)
+|+..+.|++|.|.||+.+.
T Consensus 87 -l~g~~~~g~~l~v~~a~~~~ 106 (115)
T 2cpx_A 87 -VNGYKLYGKILVIEFGKNKK 106 (115)
T ss_dssp -STTCBCSSCBCEEEECCCCS
T ss_pred -hCCCEeCCcEEEEEEccCCC
Confidence 88999999999999998754
No 51
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4.8e-19 Score=117.78 Aligned_cols=81 Identities=11% Similarity=0.115 Sum_probs=73.2
Q ss_pred CCCCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeee
Q psy9171 25 SDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQ 98 (118)
Q Consensus 25 ~~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v 98 (118)
...+++++|||+|||+++|+++|.++|++||.|.++.++.+ +++|||+|++.++|..|+.. +|+..+.|++|
T Consensus 7 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~--l~g~~~~g~~l 84 (102)
T 1x5s_A 7 GMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA--MNGKSVDGRQI 84 (102)
T ss_dssp CCCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHH--HTTCCTTSCCC
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHH--hCCCEECCeEE
Confidence 33468899999999999999999999999999999999863 68999999999999999854 88999999999
Q ss_pred EEEeccccc
Q psy9171 99 VSLISGYRN 107 (118)
Q Consensus 99 ~V~~S~~~~ 107 (118)
.|.+|+.++
T Consensus 85 ~v~~a~~~~ 93 (102)
T 1x5s_A 85 RVDQAGKSS 93 (102)
T ss_dssp EEEEEECCC
T ss_pred EEEECCCCC
Confidence 999998754
No 52
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.76 E-value=1.3e-18 Score=116.24 Aligned_cols=78 Identities=14% Similarity=0.198 Sum_probs=72.0
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc-----CceEEEeecchhhhhcccccccccceeeCC---eeeE
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG-----KNQLLLHLEAEIIHLGIPFGRVTNVLVLKG---KNQV 99 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~-----kgqAFVEm~~~e~A~~ai~~~~~n~~~i~G---r~v~ 99 (118)
+++++|||+|||+++|+++|.++|++||.|.++.+..+ +|+|||+|.+.++|..|+.. +|+..+.| ++|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~--l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHA--LHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHH--HSSCCCCTTCSSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHH--HcCCccCCCCCccEE
Confidence 67899999999999999999999999999999999875 79999999999999999854 88999998 9999
Q ss_pred EEeccccc
Q psy9171 100 SLISGYRN 107 (118)
Q Consensus 100 V~~S~~~~ 107 (118)
|.+|+.+.
T Consensus 91 V~~a~~~~ 98 (105)
T 2dnh_A 91 VKFADTDK 98 (105)
T ss_dssp EEESCSSC
T ss_pred EEECccCc
Confidence 99998654
No 53
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.76 E-value=9.5e-19 Score=131.47 Aligned_cols=78 Identities=12% Similarity=0.103 Sum_probs=72.9
Q ss_pred CCCcEEEeCCCC-CcccHHHHHHhccCCCceeEEEEecc-CceEEEeecchhhhhcccccccccceeeCCeeeEEEeccc
Q psy9171 28 KPSRVIHIRNIP-NEVTEAEIIHLGIPFGRVTNVLVLKG-KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGY 105 (118)
Q Consensus 28 ~PS~vL~V~NLP-~~vte~dL~~Lf~~fG~V~~v~l~~~-kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~ 105 (118)
+|+.+|||+||| +++|+++|.++|++||.|.+++++++ ||+|||+|++.++|..|+.. +|+..+.||+|.|.||++
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~--lng~~~~g~~l~v~~s~~ 79 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITH--LNNNFMFGQKMNVCVSKQ 79 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHH--HTTCEETTEECEEEECSC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHH--hCCCEECCceEEEEEccC
Confidence 688999999999 79999999999999999999999875 79999999999999999865 899999999999999987
Q ss_pred cc
Q psy9171 106 RN 107 (118)
Q Consensus 106 ~~ 107 (118)
++
T Consensus 80 ~~ 81 (205)
T 3tyt_A 80 PA 81 (205)
T ss_dssp SC
T ss_pred Cc
Confidence 54
No 54
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=1.1e-18 Score=116.37 Aligned_cols=78 Identities=12% Similarity=0.112 Sum_probs=72.0
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc----CceEEEeecchhhhhcccccccccceeeCCeeeEEEec
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG----KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLIS 103 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~----kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S 103 (118)
.++++|||+|||+++|+++|.++|++||.|.++.+..+ +++|||+|.+.++|..|+.. +|+..+.|++|.|.+|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~--l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTE--MNGRIVATKPLYVALA 90 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHH--HTTCBSSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHH--hCCCEeCCcEEEEEEe
Confidence 67889999999999999999999999999999999854 79999999999999999854 8899999999999999
Q ss_pred cccc
Q psy9171 104 GYRN 107 (118)
Q Consensus 104 ~~~~ 107 (118)
+.+.
T Consensus 91 ~~~~ 94 (103)
T 2d9p_A 91 QRKE 94 (103)
T ss_dssp SSCC
T ss_pred cccc
Confidence 8754
No 55
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.76 E-value=1.5e-18 Score=118.27 Aligned_cols=76 Identities=16% Similarity=0.123 Sum_probs=69.6
Q ss_pred CCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEE
Q psy9171 27 FKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVS 100 (118)
Q Consensus 27 ~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V 100 (118)
.+++++|||+|||+++|+++|.++|++||.|.++.++.+ ||+|||+|.+.++|..|+.. +|+..+.||+|.|
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~--l~g~~~~g~~l~V 114 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKA--MNGFQVGTKRLKV 114 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHH--CCCCEETTEECCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHH--cCCCEECCEEEEE
Confidence 367899999999999999999999999999999999853 68999999999999999864 8899999999999
Q ss_pred Eecc
Q psy9171 101 LISG 104 (118)
Q Consensus 101 ~~S~ 104 (118)
.|++
T Consensus 115 ~~ak 118 (118)
T 2khc_A 115 QLKK 118 (118)
T ss_dssp EEC-
T ss_pred EecC
Confidence 9985
No 56
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.76 E-value=1.4e-18 Score=116.46 Aligned_cols=78 Identities=18% Similarity=0.156 Sum_probs=71.5
Q ss_pred CCCCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc-----CceEEEeecchhhhhcccccccccceeeCCeeeE
Q psy9171 25 SDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG-----KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQV 99 (118)
Q Consensus 25 ~~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~-----kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~ 99 (118)
...+|+++|||+|||+++|+++|.++|++||.|.++.++.+ +|+|||+|.+.++|..|+.. +|+..+.|++|.
T Consensus 24 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~--l~g~~~~g~~l~ 101 (107)
T 3ulh_A 24 AGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQ--YNGVPLDGRPMN 101 (107)
T ss_dssp CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHH--HTTCEETTEECE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHH--hCCCEeCCcEEE
Confidence 34478999999999999999999999999999999999853 78999999999999999864 789999999999
Q ss_pred EEecc
Q psy9171 100 SLISG 104 (118)
Q Consensus 100 V~~S~ 104 (118)
|.+|+
T Consensus 102 V~~a~ 106 (107)
T 3ulh_A 102 IQLVT 106 (107)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99986
No 57
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2e-18 Score=116.41 Aligned_cols=79 Identities=10% Similarity=0.097 Sum_probs=72.2
Q ss_pred CCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc---CceEEEeecchhhhhcccccccccceeeCCeeeEEEec
Q psy9171 27 FKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG---KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLIS 103 (118)
Q Consensus 27 ~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~---kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S 103 (118)
..++++|||+|||+++|+++|.++|++||.|.++.+... +++|||+|++.++|..|+.. +|+..+.|++|.|.+|
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~--l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYG--RDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHH--HTTCEETTEECEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHH--cCCCEECCeEEEEEEc
Confidence 367899999999999999999999999999999999764 68999999999999999854 8899999999999999
Q ss_pred cccc
Q psy9171 104 GYRN 107 (118)
Q Consensus 104 ~~~~ 107 (118)
+.+.
T Consensus 97 ~~~~ 100 (109)
T 1x4a_A 97 RSGR 100 (109)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 8654
No 58
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=1.4e-18 Score=116.78 Aligned_cols=79 Identities=16% Similarity=0.173 Sum_probs=72.0
Q ss_pred CCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec------cCceEEEeecchhhhhccccccccc------ceeeC
Q psy9171 27 FKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK------GKNQLLLHLEAEIIHLGIPFGRVTN------VLVLK 94 (118)
Q Consensus 27 ~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~------~kgqAFVEm~~~e~A~~ai~~~~~n------~~~i~ 94 (118)
..|+++|||+|||+++|+++|.++|++||.|.++.++. .+|+|||+|.+.++|..|+.. +| +..+.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~--~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAA--ASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHH--HCTTTTTCCEESS
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHH--hccccccCCcEEc
Confidence 36789999999999999999999999999999999984 378999999999999999865 66 99999
Q ss_pred CeeeEEEeccccc
Q psy9171 95 GKNQVSLISGYRN 107 (118)
Q Consensus 95 Gr~v~V~~S~~~~ 107 (118)
|++|.|.+++.+.
T Consensus 90 g~~l~v~~a~~~~ 102 (111)
T 1x4h_A 90 GRQLKVDLAVTRD 102 (111)
T ss_dssp SCEEEEECCCCCC
T ss_pred CEEEEEEECCCCc
Confidence 9999999998754
No 59
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.76 E-value=4.6e-19 Score=117.65 Aligned_cols=79 Identities=14% Similarity=0.225 Sum_probs=70.7
Q ss_pred CCCCCcEEEeCCCCC-cccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEecc
Q psy9171 26 DFKPSRVIHIRNIPN-EVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISG 104 (118)
Q Consensus 26 ~~~PS~vL~V~NLP~-~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~ 104 (118)
..+|+++|||+|||+ ++|+++|.++|++||.|.++.+. ||+|||+|++.++|..|+.. +|+..+.|++|.|.+|+
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~A~~~--l~g~~~~g~~l~V~~a~ 81 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--NAFGFIQFDNPQSVRDAIEC--ESQEMNFGKKLILEVSS 81 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--TTEEEEEESCHHHHHHHHHH--HTCSSCBTTTBCEEEEE
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--CCEEEEEECCHHHHHHHHHH--cCCCeeCCcEEEEEEcC
Confidence 348999999999999 99999999999999999999985 79999999999999999864 88999999999999997
Q ss_pred ccch
Q psy9171 105 YRNR 108 (118)
Q Consensus 105 ~~~~ 108 (118)
.+.+
T Consensus 82 ~~~~ 85 (96)
T 2kvi_A 82 SNAR 85 (96)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 6544
No 60
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.2e-18 Score=118.55 Aligned_cols=79 Identities=15% Similarity=0.173 Sum_probs=72.4
Q ss_pred CCCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc----CceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171 26 DFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG----KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL 101 (118)
Q Consensus 26 ~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~----kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~ 101 (118)
...++++|||+|||+++|+++|.++|++||.|.++.+..+ ||+|||+|++.++|..|+.. +|+..+.|++|.|.
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~--l~g~~~~g~~l~V~ 102 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREK--LHGTVVEGRKIEVN 102 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHH--HTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHH--cCCCEECCEEEEEE
Confidence 3367899999999999999999999999999999999864 79999999999999999854 88999999999999
Q ss_pred ecccc
Q psy9171 102 ISGYR 106 (118)
Q Consensus 102 ~S~~~ 106 (118)
+|+.+
T Consensus 103 ~a~~~ 107 (109)
T 2err_A 103 NATAR 107 (109)
T ss_dssp ECCCS
T ss_pred ECCCC
Confidence 99765
No 61
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4.3e-19 Score=116.49 Aligned_cols=78 Identities=14% Similarity=-0.046 Sum_probs=68.6
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccc-eeeCCeeeEEEecccc
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNV-LVLKGKNQVSLISGYR 106 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~-~~i~Gr~v~V~~S~~~ 106 (118)
++++.|||+|||+++|+++|.++|++||.|.....+..+++|||+|++.++|..|+.. +|+ ..+.|++|.|.+|+.+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~~~g~afV~f~~~~~A~~A~~~--l~g~~~~~g~~l~v~~a~~~ 83 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLKSGYAFVDYPDQNWAIRAIET--LSGKVELHGKIMEVDYSVSK 83 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEEETTEEEECCSCHHHHHHHHHH--HTTTCEETTEECEEEECCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEcCCCEEEEEECCHHHHHHHHHH--ccCCeeECCEEEEEEEccCc
Confidence 7788999999999999999999999999944333345689999999999999999854 888 9999999999999765
Q ss_pred c
Q psy9171 107 N 107 (118)
Q Consensus 107 ~ 107 (118)
.
T Consensus 84 ~ 84 (93)
T 2cqh_A 84 K 84 (93)
T ss_dssp C
T ss_pred c
Confidence 3
No 62
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.76 E-value=9.3e-19 Score=114.22 Aligned_cols=78 Identities=17% Similarity=0.058 Sum_probs=72.0
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec----cCceEEEeecchhhhhcccccccccceeeCCeeeEEEec
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK----GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLIS 103 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~----~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S 103 (118)
+++++|||+|||+++|+++|.++|++||.|.++.+.. .+++|||+|.+.++|..|+.. +|+..+.|++|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~--l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRM--MNGMKLSGREIDVRID 83 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHH--HTTCCBTTBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHH--hCCCEECCcEEEEEEc
Confidence 7889999999999999999999999999999999986 379999999999999999854 7899999999999999
Q ss_pred cccc
Q psy9171 104 GYRN 107 (118)
Q Consensus 104 ~~~~ 107 (118)
+.+.
T Consensus 84 ~~~~ 87 (92)
T 2dgv_A 84 RNAS 87 (92)
T ss_dssp SCCS
T ss_pred CCCC
Confidence 8754
No 63
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.76 E-value=3.2e-18 Score=110.85 Aligned_cols=73 Identities=7% Similarity=0.060 Sum_probs=66.8
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL 101 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~ 101 (118)
.++++|||+|||+++|+++|.++|++||.|.++.++.+ +|+|||+|++.++|..|+. .++..+.||+|.|.
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~---~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD---QKEHRLDGRVIDPK 85 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH---SSCEEETTEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH---hCCCEECCEEEEEE
Confidence 78899999999999999999999999999999999853 6899999999999999974 46778999999998
Q ss_pred ec
Q psy9171 102 IS 103 (118)
Q Consensus 102 ~S 103 (118)
+|
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 76
No 64
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=1.1e-18 Score=116.37 Aligned_cols=79 Identities=10% Similarity=0.162 Sum_probs=72.2
Q ss_pred CCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEE
Q psy9171 27 FKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVS 100 (118)
Q Consensus 27 ~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V 100 (118)
..++++|||+|||+++|+++|.++|++||.|.++.+..+ +|+|||+|.+.++|..|+.. +|+..+.|++|.|
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~--l~g~~~~g~~l~V 87 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAA--MDGAELDGRELRV 87 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHH--HSSCCBTTBCCEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHH--cCCCEECCcEEEE
Confidence 367899999999999999999999999999999999753 68999999999999999864 8899999999999
Q ss_pred Eeccccc
Q psy9171 101 LISGYRN 107 (118)
Q Consensus 101 ~~S~~~~ 107 (118)
.+|+...
T Consensus 88 ~~a~~~~ 94 (103)
T 2dnm_A 88 QVARYGR 94 (103)
T ss_dssp EECSSCC
T ss_pred EECCcCC
Confidence 9998654
No 65
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.76 E-value=2.7e-18 Score=116.56 Aligned_cols=78 Identities=15% Similarity=0.132 Sum_probs=71.8
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL 101 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~ 101 (118)
.++++|||+|||+++|+++|.++|++||.|.++.++.+ +|+|||+|.+.++|..|+.. +|+..+.|++|.|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~--l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ--MGGQWLGGRQIRTN 90 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH--TTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHH--hCCCEECCEEEEEE
Confidence 67899999999999999999999999999999999864 68999999999999999854 88999999999999
Q ss_pred eccccc
Q psy9171 102 ISGYRN 107 (118)
Q Consensus 102 ~S~~~~ 107 (118)
+++.+.
T Consensus 91 ~a~~~~ 96 (115)
T 2dgo_A 91 WATRKP 96 (115)
T ss_dssp ESSCCC
T ss_pred EccCCC
Confidence 997653
No 66
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3e-18 Score=113.78 Aligned_cols=80 Identities=15% Similarity=0.138 Sum_probs=72.3
Q ss_pred CCCCCCcEEEeCCCCCcccHHHHHHhccCC--CceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEe
Q psy9171 25 SDFKPSRVIHIRNIPNEVTEAEIIHLGIPF--GRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLI 102 (118)
Q Consensus 25 ~~~~PS~vL~V~NLP~~vte~dL~~Lf~~f--G~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~ 102 (118)
...+++++|||+|||+++|+++|.++|++| |.|.++.+. ||+|||+|.+.++|..|+.. +|+..+.|++|.|.+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--~g~afV~f~~~~~A~~A~~~--l~g~~~~g~~l~v~~ 85 (99)
T 2cpd_A 10 DTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--RDYAFVHFSNREDAVEAMKA--LNGKVLDGSPIEVTL 85 (99)
T ss_dssp SCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--SSEEEEEESSHHHHHHHHHH--HSSEEETTEEEEEEC
T ss_pred cccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--CCeEEEEeCCHHHHHHHHHH--hCCCEeCCcEEEEEE
Confidence 344789999999999999999999999999 999998875 68999999999999999864 889999999999999
Q ss_pred ccccch
Q psy9171 103 SGYRNR 108 (118)
Q Consensus 103 S~~~~~ 108 (118)
|+.+.+
T Consensus 86 a~~~~~ 91 (99)
T 2cpd_A 86 AKPVDK 91 (99)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 987653
No 67
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=9.9e-19 Score=116.97 Aligned_cols=77 Identities=18% Similarity=0.116 Sum_probs=70.8
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL 101 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~ 101 (118)
.++++|||+|||+++|+++|.++|++||.|.++.+..+ +|+|||+|.+.++|..|+.. +|+..+.|++|.|.
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~--l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEG--LNGQDLMGQPISVD 98 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHH--HTTCBSSSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHH--hcCCEECCcEEEEE
Confidence 56788999999999999999999999999999999853 68999999999999999864 78999999999999
Q ss_pred ecccc
Q psy9171 102 ISGYR 106 (118)
Q Consensus 102 ~S~~~ 106 (118)
+|+.+
T Consensus 99 ~a~~~ 103 (106)
T 1p27_B 99 WCFVR 103 (106)
T ss_dssp ESEES
T ss_pred eecCC
Confidence 99765
No 68
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=7.8e-19 Score=121.41 Aligned_cols=76 Identities=11% Similarity=0.077 Sum_probs=67.8
Q ss_pred CCCCCcE-EEeCCCCCcccHHH----HHHhccCC-CceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeE
Q psy9171 26 DFKPSRV-IHIRNIPNEVTEAE----IIHLGIPF-GRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQV 99 (118)
Q Consensus 26 ~~~PS~v-L~V~NLP~~vte~d----L~~Lf~~f-G~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~ 99 (118)
..+|+.+ |||+|||+++++++ |.++|++| |+|.++. + |||||+|++.++|.+|+.. +|+..+.||+|+
T Consensus 4 ~~~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt---g-G~AfV~F~~~esA~~A~~~--l~G~~l~gr~i~ 77 (96)
T 2diu_A 4 GSSGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT---G-CSAILRFINQDSAERAQKR--MENEDVFGNRII 77 (96)
T ss_dssp SCCCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC---T-TCEEEEESSHHHHHHHHHH--HTTCCSSSSCCE
T ss_pred CCCCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe---c-CEEEEEECCHHHHHHHHHH--hcCCccCCceEE
Confidence 3489999 99999999999988 55899999 5999992 3 9999999999999999854 999999999999
Q ss_pred EEeccccc
Q psy9171 100 SLISGYRN 107 (118)
Q Consensus 100 V~~S~~~~ 107 (118)
|+||+.++
T Consensus 78 v~~A~~~s 85 (96)
T 2diu_A 78 VSFTPKNR 85 (96)
T ss_dssp EESSCCSC
T ss_pred EEecCCCc
Confidence 99998754
No 69
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.75 E-value=1.8e-18 Score=114.88 Aligned_cols=78 Identities=8% Similarity=0.034 Sum_probs=70.4
Q ss_pred CCCCCCcEEEeCCCCCcccHHHHHHhccCCCceeE--------EEEecc------CceEEEeecchhhhhcccccccccc
Q psy9171 25 SDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTN--------VLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNV 90 (118)
Q Consensus 25 ~~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~--------v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~ 90 (118)
...+|+.+|||+|||+++|+++|.++|++||.|.+ +.++.+ ||+|||+|.+.++|..|+.. +|+
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~--l~g 85 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDW--FDG 85 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHH--HTT
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHH--hCC
Confidence 34477899999999999999999999999999999 888753 68999999999999999854 889
Q ss_pred eeeCCeeeEEEecc
Q psy9171 91 LVLKGKNQVSLISG 104 (118)
Q Consensus 91 ~~i~Gr~v~V~~S~ 104 (118)
..+.||+|.|.+|+
T Consensus 86 ~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 86 KEFSGNPIKVSFAT 99 (99)
T ss_dssp CBSSSSBCEEEECC
T ss_pred CEeCCcEEEEEecC
Confidence 99999999999985
No 70
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=3.5e-18 Score=115.60 Aligned_cols=79 Identities=11% Similarity=-0.005 Sum_probs=72.1
Q ss_pred CCCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc-----CceEEEeecchhhhhcccccccccceeeCCeeeEE
Q psy9171 26 DFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG-----KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVS 100 (118)
Q Consensus 26 ~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~-----kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V 100 (118)
...|+++|||+|||+++|+++|.++|++||.|.++.++.+ +++|||+|++.++|..|+.. +|+..+.|++|.|
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~--l~g~~~~g~~l~v 88 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISM--FNGQLLFDRPMHV 88 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHH--HTTCEETTEECEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHH--hCCCEeCCCEEEE
Confidence 3477899999999999999999999999999999999864 78999999999999999854 8899999999999
Q ss_pred Eecccc
Q psy9171 101 LISGYR 106 (118)
Q Consensus 101 ~~S~~~ 106 (118)
.+|+..
T Consensus 89 ~~a~~~ 94 (114)
T 2do0_A 89 KMDERA 94 (114)
T ss_dssp EECSCC
T ss_pred EEcccC
Confidence 999754
No 71
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.75 E-value=1.9e-18 Score=111.42 Aligned_cols=77 Identities=12% Similarity=0.078 Sum_probs=69.6
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec-------cCceEEEeecchhhhhcccccccccceeeCCeeeEE
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK-------GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVS 100 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~-------~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V 100 (118)
..+++|||+|||+++|+++|.++|++||.|.++.+.. .+|+|||+|++.++|..|+.. +|+..+.|++|.|
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~--l~g~~~~g~~l~v 79 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKH--MDGGQIDGQEITA 79 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHH--HTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHH--cCCCeECCeEEEE
Confidence 3567899999999999999999999999999999864 478999999999999999854 8899999999999
Q ss_pred Eecccc
Q psy9171 101 LISGYR 106 (118)
Q Consensus 101 ~~S~~~ 106 (118)
.+++..
T Consensus 80 ~~a~~~ 85 (88)
T 4a8x_A 80 TAVLAP 85 (88)
T ss_dssp EEECCC
T ss_pred EECCCC
Confidence 999754
No 72
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.75 E-value=1.5e-18 Score=117.00 Aligned_cols=78 Identities=17% Similarity=0.132 Sum_probs=71.5
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL 101 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~ 101 (118)
+++++|||+|||+++|+++|.++|++||.|.++.++.+ +|+|||+|.+.++|..|+.. +|+..+.|++|.|.
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~--l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEA--LNGAEIMGQTIQVD 101 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHH--HTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHH--cCCCEECCcEEEEE
Confidence 66889999999999999999999999999999999754 69999999999999999864 88999999999999
Q ss_pred eccccc
Q psy9171 102 ISGYRN 107 (118)
Q Consensus 102 ~S~~~~ 107 (118)
+|+.+.
T Consensus 102 ~a~~~~ 107 (110)
T 1oo0_B 102 WCFVKG 107 (110)
T ss_dssp ESEESS
T ss_pred EcccCC
Confidence 997653
No 73
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=1.9e-18 Score=113.03 Aligned_cols=77 Identities=23% Similarity=0.145 Sum_probs=70.9
Q ss_pred CCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEecccc
Q psy9171 27 FKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGYR 106 (118)
Q Consensus 27 ~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~~ 106 (118)
.+++++|||+|||+++|+++|.++|++||.|.++.+. +++|||+|.+.++|..|+.. +|+..+.|++|.|.+++.+
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~--~~~afV~f~~~~~a~~A~~~--l~g~~~~g~~l~v~~a~~~ 81 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--KDYAFVHMEKEADAKAAIAQ--LNGKEVKGKRINVELSTKG 81 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC--SSCEEEEESCHHHHHHHHHH--HTTCEETTEECEEEESCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE--CCEEEEEECCHHHHHHHHHH--hCCCEECCcEEEEEECCCC
Confidence 3788999999999999999999999999999999998 46999999999999999854 8899999999999999865
Q ss_pred c
Q psy9171 107 N 107 (118)
Q Consensus 107 ~ 107 (118)
.
T Consensus 82 ~ 82 (90)
T 2dnp_A 82 Q 82 (90)
T ss_dssp C
T ss_pred C
Confidence 3
No 74
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.75 E-value=1.8e-18 Score=124.50 Aligned_cols=81 Identities=14% Similarity=0.079 Sum_probs=70.2
Q ss_pred CCCCCCcEEE--eCCCCCcccHHHHHHhccCCCceeEEEEecc-Cce-EEEeecchhhhhcccccccccceeeCC--eee
Q psy9171 25 SDFKPSRVIH--IRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG-KNQ-LLLHLEAEIIHLGIPFGRVTNVLVLKG--KNQ 98 (118)
Q Consensus 25 ~~~~PS~vL~--V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~-kgq-AFVEm~~~e~A~~ai~~~~~n~~~i~G--r~v 98 (118)
....||++|+ |+|||+.+|+++|.++|++||.|.++.+.++ +++ |||||++.++|..|+.. +|+..|.| ++|
T Consensus 21 ~~~~ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~--LnG~~i~g~~~~L 98 (130)
T 3zzy_A 21 AMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLS--LDGQNIYNACCTL 98 (130)
T ss_dssp ----CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHH--HTTCEEETTEEEE
T ss_pred ccCCCCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHH--cCCCeecCCCcEE
Confidence 3447889865 9999999999999999999999999998764 565 99999999999999865 99999998 999
Q ss_pred EEEeccccc
Q psy9171 99 VSLISGYRN 107 (118)
Q Consensus 99 ~V~~S~~~~ 107 (118)
+|+||+.++
T Consensus 99 rI~~ak~~~ 107 (130)
T 3zzy_A 99 RIDFSKLTS 107 (130)
T ss_dssp EEEECSCSS
T ss_pred EEEecCCCc
Confidence 999999864
No 75
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.75 E-value=1.9e-18 Score=117.28 Aligned_cols=76 Identities=16% Similarity=0.168 Sum_probs=70.8
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec---cCceEEEeecchhhhhcccccccccceeeCCeeeEEEecc
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK---GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISG 104 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~---~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~ 104 (118)
+|+++|||+|||+++|+++|.++|++||.|.++.++. .+|+|||+|.+.++|..|+.. +|+..+.|++|.|.||+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~--l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDH--LSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHH--HTTCBSSSCBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHH--cCCCEECCeEEEEEEec
Confidence 6789999999999999999999999999999999975 378999999999999999864 88999999999999997
Q ss_pred c
Q psy9171 105 Y 105 (118)
Q Consensus 105 ~ 105 (118)
.
T Consensus 84 ~ 84 (115)
T 3lqv_A 84 A 84 (115)
T ss_dssp H
T ss_pred C
Confidence 5
No 76
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.9e-18 Score=115.42 Aligned_cols=79 Identities=15% Similarity=0.074 Sum_probs=72.4
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL 101 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~ 101 (118)
.++++|||+|||+++|+++|.++|++||.|.++.++.+ +|+|||+|++.++|..|+.. +|+..+.|++|.|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~--l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI--MDMIKLYGKPIRVN 90 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHH--SSSCBCSSCBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHH--hCCCeECCeEEEEE
Confidence 67899999999999999999999999999999999763 57999999999999999854 88999999999999
Q ss_pred eccccch
Q psy9171 102 ISGYRNR 108 (118)
Q Consensus 102 ~S~~~~~ 108 (118)
+|+.+..
T Consensus 91 ~a~~~~~ 97 (105)
T 1x5u_A 91 KASAHNK 97 (105)
T ss_dssp ETTTTSC
T ss_pred ECCCCCc
Confidence 9987653
No 77
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=6.8e-19 Score=117.17 Aligned_cols=82 Identities=16% Similarity=0.143 Sum_probs=74.2
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL 101 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~ 101 (118)
.++++|||+|||+++|+++|.++|++||.|.++.++.+ +|+|||+|.+.++|..|+.. +|+..+.|++|.|.
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--l~g~~~~g~~l~v~ 83 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN--LNGREFSGRALRVD 83 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHH--SSSBSCSSSCBEEE
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHH--hCCCeeCCcEEEEE
Confidence 45789999999999999999999999999999999854 78999999999999999854 88999999999999
Q ss_pred eccccchHHH
Q psy9171 102 ISGYRNRQSA 111 (118)
Q Consensus 102 ~S~~~~~~~~ 111 (118)
+|+.+...+-
T Consensus 84 ~a~~~~~~~~ 93 (104)
T 1p1t_A 84 NAASEKNKEE 93 (104)
T ss_dssp ETTCTTHHHH
T ss_pred eCCCccchhh
Confidence 9998766553
No 78
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4.8e-18 Score=113.72 Aligned_cols=76 Identities=18% Similarity=0.119 Sum_probs=69.9
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc-------CceEEEeecchhhhhcccccccccceeeCCeeeEE
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG-------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVS 100 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~-------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V 100 (118)
+|+++|||+|||+++|+++|.++|++|| |.++.++.+ +|+|||+|++.++|..|+ . +|+..+.|++|.|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~--l~g~~~~g~~l~V 88 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-S--LNEESLGNKRIRV 88 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-G--GGTCEETTEECEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-h--cCCCEeCCcEEEE
Confidence 6788999999999999999999999999 999999753 689999999999999998 4 8899999999999
Q ss_pred Eeccccc
Q psy9171 101 LISGYRN 107 (118)
Q Consensus 101 ~~S~~~~ 107 (118)
.+++.+.
T Consensus 89 ~~a~~~~ 95 (104)
T 1wi8_A 89 DVADQAQ 95 (104)
T ss_dssp EECCCCC
T ss_pred EEccCCC
Confidence 9998754
No 79
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.75 E-value=3.8e-18 Score=110.47 Aligned_cols=75 Identities=15% Similarity=0.100 Sum_probs=68.9
Q ss_pred CCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEEe
Q psy9171 29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLI 102 (118)
Q Consensus 29 PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~ 102 (118)
.+++|||+|||+++|+++|.++|++||.|.++.+..+ +|+|||+|.+.++|..|+ . +|+..+.|++|.|.+
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~--~~g~~~~g~~l~V~~ 81 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-A--LDESLFRGRQIKVIP 81 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-G--GTTCEETTEECEEEE
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-h--cCCCEECCcEEEEEE
Confidence 3578999999999999999999999999999999854 789999999999999998 4 889999999999999
Q ss_pred cccc
Q psy9171 103 SGYR 106 (118)
Q Consensus 103 S~~~ 106 (118)
|+..
T Consensus 82 a~~~ 85 (89)
T 3ucg_A 82 KRTN 85 (89)
T ss_dssp TTTT
T ss_pred ccCC
Confidence 9763
No 80
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.75 E-value=9.5e-19 Score=124.15 Aligned_cols=82 Identities=13% Similarity=0.036 Sum_probs=74.9
Q ss_pred CCCCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc-CceEEEeecchhhhhcccccccccceeeCCeeeEEEec
Q psy9171 25 SDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG-KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLIS 103 (118)
Q Consensus 25 ~~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~-kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S 103 (118)
....++++|||+|||+++|+++|.++|++||.|.++.++.+ ||+|||+|.+.++|..|+.. +|+..+.|++|.|.+|
T Consensus 68 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~--l~g~~~~g~~l~v~~a 145 (150)
T 2i2y_A 68 DSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRE--LDGRTLCGCRVRVELS 145 (150)
T ss_dssp SSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHH--HSSSCSSSSCCEEEEC
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHH--cCCCEECCeEEEEEEc
Confidence 34477899999999999999999999999999999999987 89999999999999999854 8899999999999999
Q ss_pred cccch
Q psy9171 104 GYRNR 108 (118)
Q Consensus 104 ~~~~~ 108 (118)
+.+.|
T Consensus 146 ~~~~r 150 (150)
T 2i2y_A 146 NGEKR 150 (150)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87653
No 81
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=4.1e-18 Score=115.37 Aligned_cols=77 Identities=8% Similarity=-0.006 Sum_probs=71.2
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCC-----eeeEEEe
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKG-----KNQVSLI 102 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~G-----r~v~V~~ 102 (118)
.++..|||+|||+++|+++|.++|++||.|..+.++.+ ++|||+|++.++|..|+.. +|+..+.| ++|.|.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-g~afV~f~~~~~a~~Ai~~--l~g~~~~g~~~~~~~i~V~~ 89 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKEDMTYAVRK--LDNTKFRSHEGETAYIRVKV 89 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-TEEEEEESSHHHHHHHHHH--SSSEEEECTTSCEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-CEEEEEECCHHHHHHHHHH--HCcCCccCCcCcceEEEEEe
Confidence 44778999999999999999999999999999999887 9999999999999999864 89999999 9999999
Q ss_pred ccccc
Q psy9171 103 SGYRN 107 (118)
Q Consensus 103 S~~~~ 107 (118)
++.+.
T Consensus 90 a~~~~ 94 (108)
T 1x4c_A 90 DGPRS 94 (108)
T ss_dssp SSCCS
T ss_pred CCCCC
Confidence 97654
No 82
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.75 E-value=2.9e-18 Score=116.59 Aligned_cols=80 Identities=15% Similarity=0.208 Sum_probs=72.4
Q ss_pred CCCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeE
Q psy9171 26 DFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQV 99 (118)
Q Consensus 26 ~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~ 99 (118)
..+++++|||+|||+++|+++|.++|++||.|.++.++.+ |++|||+|.+.++|..|+.. +|+..+.|++|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--l~g~~~~g~~l~ 98 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQS--MNGFQIGMKRLK 98 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHH--HTTCEETTEECE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHH--cCCCEECCEEEE
Confidence 3367899999999999999999999999999999999864 47999999999999999854 889999999999
Q ss_pred EEeccccc
Q psy9171 100 SLISGYRN 107 (118)
Q Consensus 100 V~~S~~~~ 107 (118)
|.+++.+.
T Consensus 99 V~~a~~~~ 106 (115)
T 2cpz_A 99 VQLKRSKN 106 (115)
T ss_dssp EECCCCSC
T ss_pred EEEcCCCC
Confidence 99998654
No 83
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.74 E-value=3.4e-18 Score=115.70 Aligned_cols=78 Identities=19% Similarity=0.210 Sum_probs=70.7
Q ss_pred CCCCCCcEEEeCCCCCc-ccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEec
Q psy9171 25 SDFKPSRVIHIRNIPNE-VTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLIS 103 (118)
Q Consensus 25 ~~~~PS~vL~V~NLP~~-vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S 103 (118)
...+++++|||+|||++ +|+++|.++|++||.|.++.+ .+++|||+|++.++|..|+.. +|+..+.|++|.|.++
T Consensus 22 ~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--~~g~afV~f~~~~~A~~A~~~--l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 22 DPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--HKGYAFVQYSNERHARAAVLG--ENGRVLAGQTLDINMA 97 (110)
T ss_dssp CCTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--ETTEEEEECSSSHHHHHHHHH--HTTCEETTEECCEEES
T ss_pred CCCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--eCCEEEEEECCHHHHHHHHHH--cCCCEECCeEEEEEEC
Confidence 33456789999999999 999999999999999999998 689999999999999999854 8899999999999999
Q ss_pred ccc
Q psy9171 104 GYR 106 (118)
Q Consensus 104 ~~~ 106 (118)
+..
T Consensus 98 ~~~ 100 (110)
T 1wf1_A 98 GEP 100 (110)
T ss_dssp CCC
T ss_pred CCC
Confidence 743
No 84
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.74 E-value=4.1e-18 Score=118.19 Aligned_cols=75 Identities=17% Similarity=0.194 Sum_probs=68.6
Q ss_pred CCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEE
Q psy9171 27 FKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVS 100 (118)
Q Consensus 27 ~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V 100 (118)
.+++++|||+|||+++|+++|.++|++||.|.++.++.+ ||+|||+|++.++|..|+.. +|+..+.||+|.|
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~--l~g~~~~g~~l~v 137 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN--MNESELFGRTIRV 137 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHH--STEEEETTEEEEE
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHH--hCCCEECCEEEEE
Confidence 367899999999999999999999999999999999753 79999999999999999854 8899999999999
Q ss_pred Eec
Q psy9171 101 LIS 103 (118)
Q Consensus 101 ~~S 103 (118)
.+|
T Consensus 138 ~~A 140 (140)
T 2ku7_A 138 NLA 140 (140)
T ss_dssp EC-
T ss_pred EeC
Confidence 986
No 85
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.3e-18 Score=114.90 Aligned_cols=79 Identities=13% Similarity=0.143 Sum_probs=69.7
Q ss_pred CCCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeE
Q psy9171 26 DFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQV 99 (118)
Q Consensus 26 ~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~ 99 (118)
..+++.+|||+|||+++|+++|.++|++||.|.++.++.+ +|+|||+|++.++|..|+.. +|+..+.||+|.
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~--l~g~~~~g~~l~ 88 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID--LNDRPIGSRKVK 88 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHH--TTTCEETTEECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHH--hCCCeeCCeEEE
Confidence 3356788999999999999999999999999987766532 69999999999999999854 889999999999
Q ss_pred EEecccc
Q psy9171 100 SLISGYR 106 (118)
Q Consensus 100 V~~S~~~ 106 (118)
|.+|+.+
T Consensus 89 V~~a~~~ 95 (98)
T 2cqp_A 89 LVLGSGP 95 (98)
T ss_dssp EEESSCS
T ss_pred EEEcCCC
Confidence 9999764
No 86
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=4.8e-18 Score=110.65 Aligned_cols=76 Identities=16% Similarity=0.195 Sum_probs=68.6
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc-CceEEEeecchhhhhcccccccccceeeCCeeeEEEecccc
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG-KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGYR 106 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~-kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~~ 106 (118)
.++++|||+|||+++|+++|.++|++||.|.++.++.+ ||+|||+|++.++|.+|.. ....++|++|.+.+++.+
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~----~~~~~~g~~l~v~~a~~~ 78 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCG----EDLIIKGISVHISNAEPK 78 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTT----CEEEETTEEEEEECCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHhc----CCceeCCEEEEEEecCCC
Confidence 67899999999999999999999999999999999865 8999999999999998743 267889999999999765
Q ss_pred c
Q psy9171 107 N 107 (118)
Q Consensus 107 ~ 107 (118)
.
T Consensus 79 ~ 79 (88)
T 1wf0_A 79 H 79 (88)
T ss_dssp C
T ss_pred C
Confidence 4
No 87
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.74 E-value=9.1e-18 Score=112.18 Aligned_cols=78 Identities=12% Similarity=0.087 Sum_probs=70.6
Q ss_pred CCCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeE
Q psy9171 26 DFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQV 99 (118)
Q Consensus 26 ~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~ 99 (118)
...|+++|||+|||+++|+++|.++|++|| |.++.++.+ +|+|||+|++.++|..|+ . +|+..+.|++|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~--l~g~~~~g~~l~ 86 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-T--YDGALLGDRSLR 86 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-G--GTTCEETTEECE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-h--hCCCeECCeEEE
Confidence 336789999999999999999999999997 999999854 579999999999999998 4 899999999999
Q ss_pred EEeccccc
Q psy9171 100 SLISGYRN 107 (118)
Q Consensus 100 V~~S~~~~ 107 (118)
|.+|+.+.
T Consensus 87 V~~a~~~~ 94 (103)
T 2dng_A 87 VDIAEGRK 94 (103)
T ss_dssp EEECCCCC
T ss_pred EEEecCCC
Confidence 99998654
No 88
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=2e-18 Score=117.66 Aligned_cols=78 Identities=10% Similarity=0.179 Sum_probs=71.0
Q ss_pred CCCcEEEeCCCCCcccHHHHH---HhccCCCceeEEEEeccC---------ceEEEeecchhhhhcccccccccceeeCC
Q psy9171 28 KPSRVIHIRNIPNEVTEAEII---HLGIPFGRVTNVLVLKGK---------NQLLLHLEAEIIHLGIPFGRVTNVLVLKG 95 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~---~Lf~~fG~V~~v~l~~~k---------gqAFVEm~~~e~A~~ai~~~~~n~~~i~G 95 (118)
.++++|||+|||+++|+++|. ++|++||.|.++.+.+++ |+|||+|++.++|..|+.. +|+..+.|
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~--lng~~~~g 90 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQC--VNNVVVDG 90 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHH--HTTEEETT
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHH--hCCCEECC
Confidence 457789999999999999999 999999999999998543 6999999999999999864 89999999
Q ss_pred eeeEEEeccccc
Q psy9171 96 KNQVSLISGYRN 107 (118)
Q Consensus 96 r~v~V~~S~~~~ 107 (118)
|+|.|.+|+.+.
T Consensus 91 r~l~V~~a~~k~ 102 (111)
T 2cpi_A 91 RTLKASLGTTKY 102 (111)
T ss_dssp EEEEEESCCCCS
T ss_pred EEEEEEeccccc
Confidence 999999998764
No 89
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.74 E-value=8.3e-19 Score=115.05 Aligned_cols=77 Identities=14% Similarity=0.122 Sum_probs=66.9
Q ss_pred CCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec------cCceEEEeecchhhhhcccccccccceeeCCeeeEE
Q psy9171 27 FKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK------GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVS 100 (118)
Q Consensus 27 ~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~------~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V 100 (118)
.+|+.+|||+|||+++|++||.++|++||.|.++.++. .+|+|||+|.+.++|..|+.. +|+..+.||+|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~--l~g~~~~gr~l~v 89 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID--LNDRPIGSRKVKL 89 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHH--HTTCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHH--hCCCeECCcEEEE
Confidence 35678999999999999999999999999998777764 268999999999999999864 8899999999999
Q ss_pred Eeccc
Q psy9171 101 LISGY 105 (118)
Q Consensus 101 ~~S~~ 105 (118)
.+|++
T Consensus 90 ~~a~s 94 (95)
T 2ek1_A 90 SGPSS 94 (95)
T ss_dssp ECCC-
T ss_pred EeccC
Confidence 99864
No 90
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.74 E-value=6.8e-18 Score=111.75 Aligned_cols=77 Identities=13% Similarity=0.244 Sum_probs=64.4
Q ss_pred CCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc-CceEEEeecchhhhhcccccccccceeeCCeeeEEEeccc
Q psy9171 27 FKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG-KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGY 105 (118)
Q Consensus 27 ~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~-kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~ 105 (118)
.+|..+|||+|||+++||++|.++|++||.|.++.++.+ ||+|||+|++.++|.++. + ....++|+++.+.+|+.
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~~~-~---~~~~~~g~~v~v~~a~~ 83 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQSLC-G---EDLIIKGISVHISNAEP 83 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHHHT-T---CEEEETTEEEEEEECC-
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHHHc-C---CCcccCCEEEEEEEcCC
Confidence 367889999999999999999999999999999999875 899999999999999653 2 26778899999999976
Q ss_pred cc
Q psy9171 106 RN 107 (118)
Q Consensus 106 ~~ 107 (118)
+.
T Consensus 84 k~ 85 (89)
T 3d2w_A 84 KH 85 (89)
T ss_dssp --
T ss_pred CC
Confidence 43
No 91
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.74 E-value=3.5e-18 Score=117.83 Aligned_cols=79 Identities=15% Similarity=0.098 Sum_probs=72.6
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc-----CceEEEeecchhhhhcccccccccceeeCCeeeEEEe
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG-----KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLI 102 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~-----kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~ 102 (118)
.++++|||+|||+++|+++|.++|++||.|.++.+..+ +|+|||+|++.++|..|+.. +|+..+.|++|.|.+
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~--l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKD--MNGKSLHGKAIKVEQ 82 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHH--CSSCBCSSSBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHH--hCCCEECCEEEEEEE
Confidence 67789999999999999999999999999999999874 49999999999999999854 889999999999999
Q ss_pred ccccch
Q psy9171 103 SGYRNR 108 (118)
Q Consensus 103 S~~~~~ 108 (118)
|+.+..
T Consensus 83 a~~~~~ 88 (116)
T 2fy1_A 83 AKKPSF 88 (116)
T ss_dssp CCCSSC
T ss_pred CCCCCC
Confidence 987654
No 92
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=7.9e-19 Score=113.31 Aligned_cols=75 Identities=11% Similarity=0.150 Sum_probs=68.8
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL 101 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~ 101 (118)
+|+++|||+|||+++|+++|.++|++||.|.++.++.+ +|+|||+|++.++|..|+.. +|+..+.||.+.+.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~--l~g~~~~g~~~~~~ 80 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTA--LKASGVQAQMAKQS 80 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHH--HHHHTCCEESCCSS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHH--hcCCeEeeEEEeec
Confidence 68899999999999999999999999999999999864 78999999999999999854 88999999999887
Q ss_pred ecc
Q psy9171 102 ISG 104 (118)
Q Consensus 102 ~S~ 104 (118)
+++
T Consensus 81 ~~~ 83 (85)
T 1x4e_A 81 GPS 83 (85)
T ss_dssp CCC
T ss_pred CCC
Confidence 765
No 93
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.73 E-value=2.9e-18 Score=118.03 Aligned_cols=79 Identities=18% Similarity=0.100 Sum_probs=72.0
Q ss_pred CCCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeE
Q psy9171 26 DFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQV 99 (118)
Q Consensus 26 ~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~ 99 (118)
..+++.+|||+|||+++|+++|.++|++||.|.++.++.+ +|+|||+|.+.++|..|+.. +|+..+.|++|.
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~--l~g~~~~g~~l~ 95 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEG--LNGQDLMGQPIS 95 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHH--HTTCBSSSSBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHH--hCCCeeCCeEEE
Confidence 3367889999999999999999999999999999999854 78999999999999999854 889999999999
Q ss_pred EEecccc
Q psy9171 100 SLISGYR 106 (118)
Q Consensus 100 V~~S~~~ 106 (118)
|.||+.+
T Consensus 96 v~~a~~~ 102 (126)
T 3ex7_B 96 VDWCFVR 102 (126)
T ss_dssp EEESEES
T ss_pred EEEecCC
Confidence 9999754
No 94
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.7e-18 Score=115.42 Aligned_cols=78 Identities=10% Similarity=0.081 Sum_probs=71.5
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccC-CCceeEEEEecc-----CceEEEeecchhhhhccccccccccee-eCCeeeEE
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIP-FGRVTNVLVLKG-----KNQLLLHLEAEIIHLGIPFGRVTNVLV-LKGKNQVS 100 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~-fG~V~~v~l~~~-----kgqAFVEm~~~e~A~~ai~~~~~n~~~-i~Gr~v~V 100 (118)
.|+.+|||+|||+++|+++|.++|++ ||.|.++.++.+ +|+|||+|++.++|..|+.. +|+.. +.|++|.|
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~--l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTE--CQGAVGLGSKPVRL 84 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHH--TTTCCSSSSSCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHH--ccCCcccCCEeEEE
Confidence 78889999999999999999999999 999999999864 79999999999999999864 88988 99999999
Q ss_pred Eeccccc
Q psy9171 101 LISGYRN 107 (118)
Q Consensus 101 ~~S~~~~ 107 (118)
.+|+.+.
T Consensus 85 ~~a~~~~ 91 (104)
T 2dhg_A 85 SVAIPKA 91 (104)
T ss_dssp CBCCCCC
T ss_pred EEccCCC
Confidence 9996543
No 95
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.73 E-value=5.2e-18 Score=118.51 Aligned_cols=79 Identities=14% Similarity=0.148 Sum_probs=72.1
Q ss_pred CCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEE
Q psy9171 27 FKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVS 100 (118)
Q Consensus 27 ~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V 100 (118)
..++++|||+|||+++|+++|.++|++||.|.++.++.+ ||+|||+|++.++|..|+.. +|+..+.|++|.|
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~--l~g~~~~g~~l~v 116 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAG--LNGFNILNKRLKV 116 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHH--TTTEECSSCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHH--hCCCEECCeEEEE
Confidence 356789999999999999999999999999999999853 78999999999999999864 8899999999999
Q ss_pred Eeccccc
Q psy9171 101 LISGYRN 107 (118)
Q Consensus 101 ~~S~~~~ 107 (118)
.+|+.+.
T Consensus 117 ~~a~~~~ 123 (139)
T 1u6f_A 117 ALAASGH 123 (139)
T ss_dssp EESSCCC
T ss_pred EECCCCC
Confidence 9998754
No 96
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=4e-18 Score=114.50 Aligned_cols=79 Identities=15% Similarity=0.059 Sum_probs=71.3
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCc-eeEEEEe-------ccCceEEEeecchhhhhccccccccc--ceeeCCee
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGR-VTNVLVL-------KGKNQLLLHLEAEIIHLGIPFGRVTN--VLVLKGKN 97 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~-V~~v~l~-------~~kgqAFVEm~~~e~A~~ai~~~~~n--~~~i~Gr~ 97 (118)
++++.|||+|||+++|+++|.++|++||. |.++.++ ..||+|||+|.+.++|..|+.. +| +..+.|++
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~--l~~g~~~~~g~~ 83 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRK--LMPGRIQLWGHQ 83 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTT--TTTCCSCBTTBC
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHH--hhCCCceecCCe
Confidence 67889999999999999999999999998 9999998 3489999999999999999864 64 58999999
Q ss_pred eEEEeccccch
Q psy9171 98 QVSLISGYRNR 108 (118)
Q Consensus 98 v~V~~S~~~~~ 108 (118)
|.|.+|+.+..
T Consensus 84 l~V~~a~~~~~ 94 (109)
T 2dis_A 84 IAVDWAEPEID 94 (109)
T ss_dssp CEEEESCSSCS
T ss_pred EEEEEcCCCCC
Confidence 99999987653
No 97
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=9.5e-18 Score=114.22 Aligned_cols=76 Identities=12% Similarity=0.166 Sum_probs=69.6
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL 101 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~ 101 (118)
.++++|||+|||+++|+++|.++|++||.|.++.++.+ +++|||+|++.++|..|+.. +|+ .+.|++|.|.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~--~~~-~~~g~~l~V~ 91 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD--PNP-IIDGRKANVN 91 (116)
T ss_dssp CSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTC--SSC-EETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHh--CCC-cCCCEEEEEE
Confidence 67899999999999999999999999999999999864 57999999999999999865 677 8999999999
Q ss_pred ecccc
Q psy9171 102 ISGYR 106 (118)
Q Consensus 102 ~S~~~ 106 (118)
+|...
T Consensus 92 ~a~~~ 96 (116)
T 2cqd_A 92 LAYLG 96 (116)
T ss_dssp ESTTT
T ss_pred EcccC
Confidence 99654
No 98
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=3.6e-18 Score=116.50 Aligned_cols=75 Identities=16% Similarity=0.136 Sum_probs=68.9
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc-----CceEEEeecchhhhhcccccccccceeeCCeeeEEEe
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG-----KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLI 102 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~-----kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~ 102 (118)
.++++|||+|||+++|+++|.++|++||.|.++.++.+ ||+|||+|++.++|..|+. +|+..+.||+|.|.+
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~---~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE---TPGQKYKETDLLILF 85 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT---SSCCCCTTTTCEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH---cCCCEECCEEEEEEE
Confidence 56789999999999999999999999999999999863 7999999999999999985 689999999999998
Q ss_pred ccc
Q psy9171 103 SGY 105 (118)
Q Consensus 103 S~~ 105 (118)
+..
T Consensus 86 ~~~ 88 (103)
T 1s79_A 86 KDD 88 (103)
T ss_dssp HHH
T ss_pred chH
Confidence 753
No 99
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=4.8e-18 Score=114.97 Aligned_cols=78 Identities=10% Similarity=0.046 Sum_probs=71.1
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCcee--------EEEEecc------CceEEEeecchhhhhcccccccccceee
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVT--------NVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVL 93 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~--------~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i 93 (118)
.++++|||+|||+++|+++|.++|++||.|. .+.++.+ +|+|||+|.+.++|..|+.. +|+..+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~--l~g~~~ 90 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEW--FDGKDF 90 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHH--HTTCEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHH--cCCCcc
Confidence 6789999999999999999999999999998 6888754 68999999999999999854 789999
Q ss_pred CCeeeEEEeccccc
Q psy9171 94 KGKNQVSLISGYRN 107 (118)
Q Consensus 94 ~Gr~v~V~~S~~~~ 107 (118)
.|++|.|.+++.+.
T Consensus 91 ~g~~l~V~~a~~~~ 104 (113)
T 2cpe_A 91 QGSKLKVSLARKKP 104 (113)
T ss_dssp TTEECEEECSSCCC
T ss_pred CCCEEEEEECCCCC
Confidence 99999999998754
No 100
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.73 E-value=3.8e-18 Score=120.17 Aligned_cols=80 Identities=13% Similarity=0.098 Sum_probs=72.7
Q ss_pred CCCCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeee
Q psy9171 25 SDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQ 98 (118)
Q Consensus 25 ~~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v 98 (118)
...+|+++|||+|||+++|+++|.++|++||.|.++.++.+ ||+|||+|++.++|..|+.. +|+..+.|++|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~--lng~~i~g~~l 118 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKER--ANGMELDGRRI 118 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHH--HTTCCSSSSCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHH--hCCCEECCEEE
Confidence 34478999999999999999999999999999999999843 78999999999999999864 88999999999
Q ss_pred EEEecccc
Q psy9171 99 VSLISGYR 106 (118)
Q Consensus 99 ~V~~S~~~ 106 (118)
.|.+|+.+
T Consensus 119 ~V~~a~~~ 126 (129)
T 2kxn_B 119 RVDFSITK 126 (129)
T ss_dssp EESCCSSS
T ss_pred EEEEecCC
Confidence 99999764
No 101
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=1.3e-17 Score=110.89 Aligned_cols=75 Identities=13% Similarity=0.060 Sum_probs=67.1
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec-----cCceEEEeecchhhhhcccccccccceeeCCeeeEEEe
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK-----GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLI 102 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~-----~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~ 102 (118)
.++++|||+|||+++|+++|.++|++||.| .++. .+|+|||+|++.++|..|+.. +|+..+.|++|.|.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~--l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNS--CNKREIEGRAIRLEL 87 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHH--TSSEEETTEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHH--hCCCEeCCeEEEEEE
Confidence 678999999999999999999999999988 3332 379999999999999999854 889999999999999
Q ss_pred ccccc
Q psy9171 103 SGYRN 107 (118)
Q Consensus 103 S~~~~ 107 (118)
++.+.
T Consensus 88 a~~~~ 92 (101)
T 2fc9_A 88 QGPRG 92 (101)
T ss_dssp CSSCC
T ss_pred cCCCC
Confidence 98764
No 102
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.72 E-value=7.9e-18 Score=108.54 Aligned_cols=71 Identities=18% Similarity=0.198 Sum_probs=67.3
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCC----C-------ceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCe
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPF----G-------RVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGK 96 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~f----G-------~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr 96 (118)
.++++|||+|||+++|+++|.++|++| | .|.++.+..+||+|||+|.+.++|..|+ . +|+..+.||
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~-~--l~g~~~~g~ 80 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-A--FDGIIFQGQ 80 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG-G--GTTCEETTE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH-h--cCCCEECCe
Confidence 578899999999999999999999999 8 9999999999999999999999999998 4 899999999
Q ss_pred eeEEE
Q psy9171 97 NQVSL 101 (118)
Q Consensus 97 ~v~V~ 101 (118)
++.|.
T Consensus 81 ~l~V~ 85 (87)
T 2hzc_A 81 SLKIR 85 (87)
T ss_dssp ECEEE
T ss_pred EEEEe
Confidence 99886
No 103
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.72 E-value=2.4e-18 Score=115.08 Aligned_cols=78 Identities=17% Similarity=0.097 Sum_probs=67.9
Q ss_pred CCCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc-------CceEEEeecchhhhhcccccccccceeeCCeee
Q psy9171 26 DFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG-------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQ 98 (118)
Q Consensus 26 ~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~-------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v 98 (118)
...++++|||+|||+++|+++|.++|++|| |.++.++.+ +|+|||+|.+.++|..|+ . +|+..+.||+|
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~--l~g~~~~g~~l 90 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-S--LNEESLGNRRI 90 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-H--TTTCCBTTBCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-h--cCCCEECCeEE
Confidence 346789999999999999999999999999 999999753 689999999999999998 4 88999999999
Q ss_pred EEEeccccc
Q psy9171 99 VSLISGYRN 107 (118)
Q Consensus 99 ~V~~S~~~~ 107 (118)
.|.+|+.++
T Consensus 91 ~V~~a~~~~ 99 (100)
T 2j76_E 91 RVDVADQAQ 99 (100)
T ss_dssp CCEECCCSC
T ss_pred EEEeccCCC
Confidence 999998764
No 104
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.72 E-value=8.5e-18 Score=109.89 Aligned_cols=76 Identities=14% Similarity=0.132 Sum_probs=70.3
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEecccc
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGYR 106 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~~ 106 (118)
.++++|||+|||+++|+++|.++|++| .|.++.+.+.||+|||+|++.++|..|+.. +|+..+.||++.|.+|...
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~~~~g~afV~f~~~~~a~~Ai~~--l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVDRNKRTAFVTLLNGEQAQNAIQM--FHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEEGGGTEEEECCSCHHHHHHHHHH--HTTEEETTEEEEEEECCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEeCCCcEEEEEECCHHHHHHHHHH--hCCCeECCcEEEEEEcCCC
Confidence 456789999999999999999999999 999999887899999999999999999864 8999999999999999764
No 105
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.72 E-value=2.7e-18 Score=114.85 Aligned_cols=80 Identities=18% Similarity=0.150 Sum_probs=72.1
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceee---CCeee
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVL---KGKNQ 98 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i---~Gr~v 98 (118)
+++++|||+|||+++|+++|.++|++||.|.++.++.+ ||+|||+|++.++|..|+.. +|+..+ .|++|
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~--l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSA--LHEQKTLPGMNRPI 88 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHH--HTTTCCCTTCSSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHH--hcCCcccCCCCceE
Confidence 67889999999999999999999999999999999863 68999999999999999864 788777 89999
Q ss_pred EEEeccccchH
Q psy9171 99 VSLISGYRNRQ 109 (118)
Q Consensus 99 ~V~~S~~~~~~ 109 (118)
.|.+++.+..+
T Consensus 89 ~v~~a~~~~~~ 99 (106)
T 2dgp_A 89 QVKPADSESRG 99 (106)
T ss_dssp EEEECCCCSCC
T ss_pred EEEECCccccc
Confidence 99999876543
No 106
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.4e-17 Score=113.97 Aligned_cols=80 Identities=19% Similarity=0.183 Sum_probs=71.4
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCce-eEEEEec-----cCceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRV-TNVLVLK-----GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL 101 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V-~~v~l~~-----~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~ 101 (118)
.++++|||+|||+++|+++|.++|++||.| .++.++. .||+|||+|++.++|..|+. .|+..+.||+|.|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~---~~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSER---LHRKKLNGREAFVH 89 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGG---GCSEEETTEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHH---hCCCccCCeEEEEE
Confidence 568899999999999999999999999999 8888875 37999999999999999975 38999999999999
Q ss_pred eccccchHH
Q psy9171 102 ISGYRNRQS 110 (118)
Q Consensus 102 ~S~~~~~~~ 110 (118)
+|+.+...+
T Consensus 90 ~a~~~~~~~ 98 (114)
T 2cpy_A 90 VVTLEDMRE 98 (114)
T ss_dssp EECHHHHHH
T ss_pred ECCHHHHHH
Confidence 997755444
No 107
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=4.5e-18 Score=113.79 Aligned_cols=78 Identities=10% Similarity=0.085 Sum_probs=71.0
Q ss_pred CCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEE
Q psy9171 27 FKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVS 100 (118)
Q Consensus 27 ~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V 100 (118)
.+++++|||+|||+++|+++|.++|++||.|.++.++.+ ||+|||+|++.++|..|+.. |+..+.|++|.|
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~---~~~~~~g~~l~V 89 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS---RPHTLDGRNIDP 89 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH---CSEEETTEEEBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh---CCCeECCEEEEE
Confidence 367899999999999999999999999999999999864 58999999999999999853 899999999999
Q ss_pred Eeccccc
Q psy9171 101 LISGYRN 107 (118)
Q Consensus 101 ~~S~~~~ 107 (118)
.+++.+.
T Consensus 90 ~~a~~~~ 96 (105)
T 2dh8_A 90 KPCTPRG 96 (105)
T ss_dssp CCSCCSS
T ss_pred EEccCCC
Confidence 9997654
No 108
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.72 E-value=2.1e-18 Score=115.83 Aligned_cols=77 Identities=14% Similarity=-0.018 Sum_probs=70.1
Q ss_pred CCCcEEEeCCCCC------cccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCC
Q psy9171 28 KPSRVIHIRNIPN------EVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKG 95 (118)
Q Consensus 28 ~PS~vL~V~NLP~------~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~G 95 (118)
..+++|||+|||+ ++++++|.++|++||.|.++.++.+ ||+|||+|++.++|..|+.. +|+..+.|
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~--lng~~~~g 81 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKS--FHGKRLDL 81 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHH--HTTCBSSS
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHH--hCCcccCC
Confidence 4577999999999 9999999999999999999999742 69999999999999999864 89999999
Q ss_pred -eeeEEEecccc
Q psy9171 96 -KNQVSLISGYR 106 (118)
Q Consensus 96 -r~v~V~~S~~~ 106 (118)
|+|.|.+++.+
T Consensus 82 ~r~l~V~~a~~~ 93 (100)
T 3ns6_A 82 KHRLFLYTMKDV 93 (100)
T ss_dssp SCBCEEEESHHH
T ss_pred CeEEEEEECchh
Confidence 99999999654
No 109
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.5e-17 Score=108.46 Aligned_cols=77 Identities=10% Similarity=0.014 Sum_probs=71.0
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEeccccc
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGYRN 107 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~~~ 107 (118)
.|+++|||+|| ++|+++|.++|++||.|.++.+.+.||+|||+|++.++|..|+.. +|+..+.|++|.|.+++.+.
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~--l~g~~~~g~~l~v~~a~~~~ 88 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAE--LNGTQVESVQLKVNIARKQP 88 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHH--TTTEEETTEEEEEECCSSCC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHH--hCCCeECCeEEEEEECCCCC
Confidence 67889999996 899999999999999999999988899999999999999999854 88999999999999998764
Q ss_pred h
Q psy9171 108 R 108 (118)
Q Consensus 108 ~ 108 (118)
.
T Consensus 89 ~ 89 (97)
T 1x5p_A 89 M 89 (97)
T ss_dssp C
T ss_pred C
Confidence 3
No 110
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.72 E-value=3.1e-18 Score=120.62 Aligned_cols=89 Identities=18% Similarity=0.145 Sum_probs=74.9
Q ss_pred eeccCCCCCCCCCCcEEEeCCCCCcccHHHHHHhccCCCceeE--------EEEe---ccCceEEEeecchhhhhccccc
Q psy9171 17 QAKLDRQKSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTN--------VLVL---KGKNQLLLHLEAEIIHLGIPFG 85 (118)
Q Consensus 17 ~~~~~~~~~~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~--------v~l~---~~kgqAFVEm~~~e~A~~ai~~ 85 (118)
.......+....|+.+|||+|||+++|+++|..+|++||.|.. +.+. ..+|+|||+|.+.++|..|+..
T Consensus 32 ~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~ 111 (143)
T 3egn_A 32 TLSVFRSYEPGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKE 111 (143)
T ss_dssp HCGGGTTCCCCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHH
T ss_pred hcccccccCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHH
Confidence 3344444566689999999999999999999999999999875 4433 2479999999999999999864
Q ss_pred ccccceeeCCeeeEEEeccccc
Q psy9171 86 RVTNVLVLKGKNQVSLISGYRN 107 (118)
Q Consensus 86 ~~~n~~~i~Gr~v~V~~S~~~~ 107 (118)
+|+..+.|++|.|.||+.+.
T Consensus 112 --lng~~~~g~~l~V~~a~~~~ 131 (143)
T 3egn_A 112 --ANGYVLFGKPMVVQFARSAR 131 (143)
T ss_dssp --HTTBEETTEECEEEECCCSC
T ss_pred --hCCCEeCCcEEEEEECCCCC
Confidence 89999999999999998754
No 111
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.72 E-value=2.1e-18 Score=114.73 Aligned_cols=75 Identities=13% Similarity=0.078 Sum_probs=70.0
Q ss_pred EEEeCCCCCcccHHHHHHhccCCCceeEEEEecc-CceEEEeecchhhhhcccccccccceeeCCeeeEEEeccccch
Q psy9171 32 VIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG-KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGYRNR 108 (118)
Q Consensus 32 vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~-kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~~~~ 108 (118)
+|||+|||+++|+++|.++|++||.|.++.+..+ +|+|||+|++.++|..|+.. +|+..+.|+++.|.+|+.+.+
T Consensus 2 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~--l~g~~~~g~~l~V~~a~~~~~ 77 (101)
T 2hvz_A 2 KVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRG--LDGKVICGSRVRVELSTGMPR 77 (101)
T ss_dssp EEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHH--HHHSCSSSCCCEEEESSSCCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHH--HCCCeECCcEEEEEEccCCCC
Confidence 6999999999999999999999999999999986 99999999999999999864 789999999999999987653
No 112
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.72 E-value=7.2e-18 Score=122.45 Aligned_cols=100 Identities=19% Similarity=0.173 Sum_probs=83.4
Q ss_pred CcceecchheeeeeccCCCC---CCCCCCcEEEeCCCCCcccHHHHHHhccCCC-ceeEEEEec-cCceEEEeecchhhh
Q psy9171 5 GGNVKYTLVMVVQAKLDRQK---SDFKPSRVIHIRNIPNEVTEAEIIHLGIPFG-RVTNVLVLK-GKNQLLLHLEAEIIH 79 (118)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~---~~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG-~V~~v~l~~-~kgqAFVEm~~~e~A 79 (118)
+...+|+..+..++..+... ...+|+++|||+|||+++|+++|.++|++|| .|.++.+++ .+|+|||+|++.++|
T Consensus 92 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g~afV~f~~~~~A 171 (198)
T 1qm9_A 92 GLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEA 171 (198)
T ss_dssp SCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTTSSCEEEECSSHHHH
T ss_pred cccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCCCcEEEEEeCCHHHH
Confidence 34455666666555544322 3457899999999999999999999999999 999999976 689999999999999
Q ss_pred hcccccccccceeeC-CeeeEEEecccc
Q psy9171 80 LGIPFGRVTNVLVLK-GKNQVSLISGYR 106 (118)
Q Consensus 80 ~~ai~~~~~n~~~i~-Gr~v~V~~S~~~ 106 (118)
..|+.. +|+..+. |++|.|.||+.+
T Consensus 172 ~~A~~~--l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 172 VQALID--LHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp HHHHHH--HTSSCCSSCCSCCEEEECCC
T ss_pred HHHHHH--hcCCccCCCCeEEEEeeccc
Confidence 999864 8899999 999999999753
No 113
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.72 E-value=1.5e-17 Score=114.66 Aligned_cols=79 Identities=16% Similarity=0.128 Sum_probs=72.0
Q ss_pred CCCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc-----CceEEEeecchhhhhcccccccccceeeCCeeeEE
Q psy9171 26 DFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG-----KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVS 100 (118)
Q Consensus 26 ~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~-----kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V 100 (118)
...++.+|||+|||+++|+++|.++|++||.|.++.+..+ +|+|||+|++.++|..|+.. +|+..+.|++|.|
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~--l~g~~~~g~~l~V 108 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQ--YKGVPLDGRPMDI 108 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHH--HTTEESSSCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHH--cCCCEECCcEEEE
Confidence 3467889999999999999999999999999999999863 79999999999999999854 8899999999999
Q ss_pred Eecccc
Q psy9171 101 LISGYR 106 (118)
Q Consensus 101 ~~S~~~ 106 (118)
.+|...
T Consensus 109 ~~a~~~ 114 (124)
T 2kt5_A 109 QLVASQ 114 (124)
T ss_dssp EEECCT
T ss_pred EEeCCC
Confidence 999764
No 114
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.2e-17 Score=113.65 Aligned_cols=77 Identities=13% Similarity=0.127 Sum_probs=70.1
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL 101 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~ 101 (118)
.++++|||+|||+++|+++|.++|++||.|.++.++.+ +|+|||+|.+.++|..|+.. |+..+.|++|.|.
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~---~~~~~~g~~l~V~ 101 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA---RPHSIDGRVVEPK 101 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS---CSEEETTEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh---CCcEECCEEEEEE
Confidence 45789999999999999999999999999999999864 68999999999999999853 8999999999999
Q ss_pred eccccc
Q psy9171 102 ISGYRN 107 (118)
Q Consensus 102 ~S~~~~ 107 (118)
+++.+.
T Consensus 102 ~a~~~~ 107 (116)
T 1x4b_A 102 RAVARE 107 (116)
T ss_dssp CCSSCC
T ss_pred ECCCCc
Confidence 997654
No 115
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=3e-17 Score=107.22 Aligned_cols=75 Identities=12% Similarity=0.186 Sum_probs=69.1
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc-----CceEEEeecchhhhhcccccccccceeeCCeeeEEEe
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG-----KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLI 102 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~-----kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~ 102 (118)
.++.+|||+|||+++|++||.++|++| .|.++.++.+ +|+|||+|++.++|..|+. +|+..+.||+|.|.+
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~---~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK---CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH---SCSEEETTEEEEEEE
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH---hCCceeCCcEEEEEE
Confidence 567899999999999999999999999 9999999864 7899999999999999984 889999999999999
Q ss_pred cccc
Q psy9171 103 SGYR 106 (118)
Q Consensus 103 S~~~ 106 (118)
|+.+
T Consensus 84 a~~~ 87 (91)
T 2dgw_A 84 EKSG 87 (91)
T ss_dssp ESSC
T ss_pred CCcC
Confidence 9765
No 116
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.72 E-value=8.6e-18 Score=125.24 Aligned_cols=78 Identities=17% Similarity=0.103 Sum_probs=70.3
Q ss_pred CCCcE--EEeCCCCCcccHHHHHHhccCCCceeEEEEecc--CceEEEeecchhhhhcccccccccceeeCC--eeeEEE
Q psy9171 28 KPSRV--IHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG--KNQLLLHLEAEIIHLGIPFGRVTNVLVLKG--KNQVSL 101 (118)
Q Consensus 28 ~PS~v--L~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~--kgqAFVEm~~~e~A~~ai~~~~~n~~~i~G--r~v~V~ 101 (118)
+|+++ |||+|||+++|+++|.++|++||.|.++.+..+ +++|||||++.++|..|+.. +|+..|.| ++|+|.
T Consensus 42 ~ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~--LnG~~i~g~g~~L~V~ 119 (164)
T 1sjr_A 42 GQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLS--LDGQNIYNACCTLRID 119 (164)
T ss_dssp CCCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHH--STTBCSSSSCSCEEEE
T ss_pred CCCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHH--hCCCEecCCCcEEEEE
Confidence 67777 679999999999999999999999999999753 57999999999999999865 99999965 999999
Q ss_pred eccccc
Q psy9171 102 ISGYRN 107 (118)
Q Consensus 102 ~S~~~~ 107 (118)
||+.++
T Consensus 120 ~Ak~~~ 125 (164)
T 1sjr_A 120 FSKLTS 125 (164)
T ss_dssp ECSSSS
T ss_pred EecCCc
Confidence 999764
No 117
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.71 E-value=1.2e-17 Score=109.97 Aligned_cols=80 Identities=13% Similarity=0.093 Sum_probs=70.2
Q ss_pred CCCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec--cCceEEEeecchhhhhcccccccccceeeCCeeeEEEec
Q psy9171 26 DFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK--GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLIS 103 (118)
Q Consensus 26 ~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~--~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S 103 (118)
...++++|||+|||+++|+++|.++|++||.|..+ -.. .+|+|||+|.+.++|..|+.. +|+..+.|++|.|.+|
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~--l~g~~~~g~~l~v~~a 88 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEE--KQGAEIDGRSVSLYYT 88 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHH--TTEEEETTEEEEEEEC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHH--hCCCEECCeEEEEEEc
Confidence 33678999999999999999999999999999877 222 379999999999999999864 8899999999999999
Q ss_pred cccch
Q psy9171 104 GYRNR 108 (118)
Q Consensus 104 ~~~~~ 108 (118)
+.+.+
T Consensus 89 ~~~~~ 93 (96)
T 1fjc_A 89 GEKGG 93 (96)
T ss_dssp SSSCC
T ss_pred CCCCC
Confidence 76653
No 118
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=6.4e-18 Score=112.07 Aligned_cols=77 Identities=10% Similarity=0.075 Sum_probs=68.7
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec--cCceEEEeecchhhhhcccccccccceeeCCeeeEEEeccc
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK--GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGY 105 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~--~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~ 105 (118)
+++++|||+|||+++|+++|.++|++||.|. +.++. .+|+|||+|++.++|..|+.. +|+..+.|++|.|.+++.
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~--l~g~~~~g~~l~V~~a~~ 93 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSC--LQGLRLGTDTLRVALARQ 93 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHH--HTTCCSSSSCCEEEECCC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHH--hCCCEECCcEEEEEEcCC
Confidence 4588999999999999999999999999996 55553 489999999999999999854 899999999999999986
Q ss_pred cc
Q psy9171 106 RN 107 (118)
Q Consensus 106 ~~ 107 (118)
+.
T Consensus 94 ~~ 95 (97)
T 2e5j_A 94 QR 95 (97)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 119
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2e-17 Score=110.23 Aligned_cols=76 Identities=14% Similarity=0.152 Sum_probs=69.0
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL 101 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~ 101 (118)
.++++|||+|||+++|+++|.++|++||.|.++.++.+ +|+|||+|++.++|..|+. ++..+.|++|.|.
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~----~~~~~~g~~l~v~ 88 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS----QRHMIDGRWCDCK 88 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH----SCEEETTEEEEEE
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH----cCCeeCCeEEEEE
Confidence 67889999999999999999999999999999999864 5799999999999999985 3679999999999
Q ss_pred eccccc
Q psy9171 102 ISGYRN 107 (118)
Q Consensus 102 ~S~~~~ 107 (118)
+++.+.
T Consensus 89 ~a~~~~ 94 (103)
T 2cqg_A 89 LPNSKQ 94 (103)
T ss_dssp CCCTTC
T ss_pred ecCCCC
Confidence 997754
No 120
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.71 E-value=1.7e-17 Score=124.60 Aligned_cols=100 Identities=19% Similarity=0.173 Sum_probs=84.4
Q ss_pred CcceecchheeeeeccCCCC---CCCCCCcEEEeCCCCCcccHHHHHHhccCCC-ceeEEEEec-cCceEEEeecchhhh
Q psy9171 5 GGNVKYTLVMVVQAKLDRQK---SDFKPSRVIHIRNIPNEVTEAEIIHLGIPFG-RVTNVLVLK-GKNQLLLHLEAEIIH 79 (118)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~---~~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG-~V~~v~l~~-~kgqAFVEm~~~e~A 79 (118)
+...+|+..+.+++..+... +..+|+++|||+|||+++|+++|.++|++|| .|.++.+++ .+|+|||+|++.++|
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~g~afV~f~~~~~A 202 (229)
T 2adc_A 123 GLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEA 202 (229)
T ss_dssp TTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSSTTCEEEEESSHHHH
T ss_pred ccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECCCcEEEEEECCHHHH
Confidence 34556666666666555322 3457899999999999999999999999999 999999976 789999999999999
Q ss_pred hcccccccccceeeC-CeeeEEEecccc
Q psy9171 80 LGIPFGRVTNVLVLK-GKNQVSLISGYR 106 (118)
Q Consensus 80 ~~ai~~~~~n~~~i~-Gr~v~V~~S~~~ 106 (118)
..|+.. +|+..+. |++|.|.||+.+
T Consensus 203 ~~Ai~~--l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 203 VQALID--LHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp HHHHHH--HTTCBSSSSCBCEEEECSSC
T ss_pred HHHHHH--HCCCccCCCCeEEEEEecCC
Confidence 999864 8899999 999999999763
No 121
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.71 E-value=2e-17 Score=117.98 Aligned_cols=78 Identities=13% Similarity=-0.040 Sum_probs=71.4
Q ss_pred CCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEE
Q psy9171 27 FKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVS 100 (118)
Q Consensus 27 ~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V 100 (118)
..++++|||+|||+++|+++|.++|++||.|.++.++.+ +++|||+|++.++|..|+.. +|+..|.|++|.|
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~--l~g~~~~g~~l~V 113 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRY--INGTRLDDRIIRT 113 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH--TTTSEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHH--hCCCEECCeEEEE
Confidence 367899999999999999999999999999999999753 58999999999999999864 8899999999999
Q ss_pred Eecccc
Q psy9171 101 LISGYR 106 (118)
Q Consensus 101 ~~S~~~ 106 (118)
.+|+..
T Consensus 114 ~~a~~~ 119 (156)
T 1h2v_Z 114 DWDAGF 119 (156)
T ss_dssp EEESCC
T ss_pred EECCCC
Confidence 999754
No 122
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.71 E-value=6.8e-18 Score=115.89 Aligned_cols=75 Identities=12% Similarity=0.115 Sum_probs=69.2
Q ss_pred CCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEEe
Q psy9171 29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLI 102 (118)
Q Consensus 29 PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~ 102 (118)
++++|||+|||+++|+++|.++|++||.|.++.++.+ +|+|||+|.+.++|..|+ . +|+..+.|++|.|.+
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~--l~g~~~~g~~l~V~~ 111 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-A--MDETVFRGRTIKVLP 111 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-T--TTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-h--cCCCeECCeEEEEEE
Confidence 3679999999999999999999999999999999753 789999999999999998 3 899999999999999
Q ss_pred cccc
Q psy9171 103 SGYR 106 (118)
Q Consensus 103 S~~~ 106 (118)
++..
T Consensus 112 a~~~ 115 (124)
T 2jwn_A 112 KRTN 115 (124)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 9764
No 123
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.71 E-value=1.6e-17 Score=112.21 Aligned_cols=77 Identities=16% Similarity=0.103 Sum_probs=69.9
Q ss_pred CCCcEEEeCCCCCcc------cHHHHHHhccCCCceeEEEEec----cCceEEEeecchhhhhcccccccccceeeCCe-
Q psy9171 28 KPSRVIHIRNIPNEV------TEAEIIHLGIPFGRVTNVLVLK----GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGK- 96 (118)
Q Consensus 28 ~PS~vL~V~NLP~~v------te~dL~~Lf~~fG~V~~v~l~~----~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr- 96 (118)
.++++|||+|||+++ |+++|.++|++||.|.++.+.+ .||+|||+|.+.++|..|+.. +|+..+.||
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~--l~g~~~~g~~ 90 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKN--ADGYKLDKQH 90 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHH--CSSEECSTTC
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHH--hCCcccCCCc
Confidence 557899999999999 8999999999999999999873 379999999999999999864 899999999
Q ss_pred eeEEEecccc
Q psy9171 97 NQVSLISGYR 106 (118)
Q Consensus 97 ~v~V~~S~~~ 106 (118)
+|.|.+|+..
T Consensus 91 ~l~V~~a~~~ 100 (105)
T 2nlw_A 91 TFRVNLFTDF 100 (105)
T ss_dssp EEEEECSCCC
T ss_pred eEEEEEcchH
Confidence 9999999653
No 124
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.71 E-value=1.8e-17 Score=112.94 Aligned_cols=78 Identities=13% Similarity=0.043 Sum_probs=67.6
Q ss_pred CCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEE
Q psy9171 27 FKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVS 100 (118)
Q Consensus 27 ~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V 100 (118)
..++++|||+|||+++|+++|.++|++||.|.++.++.+ ||+|||+|++.++|..|+.. + +..+.||+|.|
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~--~-~~~l~g~~l~V 98 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ--S-RHELDSKTIDP 98 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHS--S-CEEETTEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHH--C-CCcCCCEEEEE
Confidence 367889999999999999999999999999999999853 68999999999999999864 3 59999999999
Q ss_pred Eeccccc
Q psy9171 101 LISGYRN 107 (118)
Q Consensus 101 ~~S~~~~ 107 (118)
.+|..+.
T Consensus 99 ~~a~~~~ 105 (109)
T 2rs2_A 99 KVAFPRR 105 (109)
T ss_dssp EECCCCC
T ss_pred EEccCCC
Confidence 9997654
No 125
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.6e-17 Score=112.83 Aligned_cols=76 Identities=12% Similarity=0.081 Sum_probs=69.2
Q ss_pred CCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec------cCceEEEeecchhhhhcccccccccceeeCCeeeEEEe
Q psy9171 29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK------GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLI 102 (118)
Q Consensus 29 PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~------~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~ 102 (118)
++++|||+|||+++|+++|.++|++||.|.++.++. .+|+|||+|++.++|..|+ . +|+..+.|++|.|.+
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~--l~g~~~~g~~l~V~~ 100 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-G--LTGQRLLGVPIIVQA 100 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-H--HTTEEETTEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-H--cCCCEeCCeEEEEEe
Confidence 357999999999999999999999999999999984 2689999999999999998 4 889999999999999
Q ss_pred ccccc
Q psy9171 103 SGYRN 107 (118)
Q Consensus 103 S~~~~ 107 (118)
|+.+.
T Consensus 101 a~~~~ 105 (114)
T 2cq4_A 101 SQAEK 105 (114)
T ss_dssp HHHHH
T ss_pred cCCCc
Confidence 97643
No 126
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.71 E-value=1.2e-17 Score=121.48 Aligned_cols=80 Identities=13% Similarity=0.024 Sum_probs=71.3
Q ss_pred CCcEEEeCCCCCcccHHHHHHhccCCC--ceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEE
Q psy9171 29 PSRVIHIRNIPNEVTEAEIIHLGIPFG--RVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVS 100 (118)
Q Consensus 29 PS~vL~V~NLP~~vte~dL~~Lf~~fG--~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V 100 (118)
.++.|||+|||+++||++|.++|++|| .|.++.++.+ ||+|||+|++.++|..|+.. +|+..+.||+|.|
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~--lng~~~~Gr~l~V 131 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLEL--LPGKVLNGEKVDV 131 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHH--STTCEETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHH--cCCCEECCeEeEE
Confidence 357899999999999999999999999 9999999853 68999999999999999864 8999999999999
Q ss_pred EeccccchHH
Q psy9171 101 LISGYRNRQS 110 (118)
Q Consensus 101 ~~S~~~~~~~ 110 (118)
.+++.++..+
T Consensus 132 ~~a~~~~~~~ 141 (156)
T 3n9u_C 132 RPATRQNLSQ 141 (156)
T ss_dssp EECCHHHHHH
T ss_pred EEcCCCcchh
Confidence 9998766544
No 127
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.71 E-value=1.2e-17 Score=116.22 Aligned_cols=77 Identities=14% Similarity=0.041 Sum_probs=69.2
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCC-ceeEEEEec--cCceEEEeecchhhhhcccccccccceeeCCeeeEEEecc
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFG-RVTNVLVLK--GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISG 104 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG-~V~~v~l~~--~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~ 104 (118)
++...|||+|||+++|+++|.++|++|| .|..+.+.. .+|+|||+|++.++|..|+.. +|+..+.||+|.|.+|+
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~--lng~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALER--LNNIEFRGSVITVERDD 103 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHH--TTTEEETTEEEEEEESC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHH--cCCCEECCeEEEEEECC
Confidence 3456899999999999999999999999 899998863 489999999999999999854 89999999999999997
Q ss_pred cc
Q psy9171 105 YR 106 (118)
Q Consensus 105 ~~ 106 (118)
..
T Consensus 104 ~~ 105 (111)
T 2jvr_A 104 NP 105 (111)
T ss_dssp C-
T ss_pred CC
Confidence 53
No 128
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.70 E-value=6.1e-18 Score=108.87 Aligned_cols=69 Identities=17% Similarity=0.182 Sum_probs=62.8
Q ss_pred CcEEEeCCCCCcc------cHHHHHHhccCCCceeEEEEec----cCceEEEeecchhhhhcccccccccceeeCCe-ee
Q psy9171 30 SRVIHIRNIPNEV------TEAEIIHLGIPFGRVTNVLVLK----GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGK-NQ 98 (118)
Q Consensus 30 S~vL~V~NLP~~v------te~dL~~Lf~~fG~V~~v~l~~----~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr-~v 98 (118)
|++|||+|||+++ |+++|.++|++||.|.++.+.+ .||+|||+|++.++|..|+.. +|+..+.|| +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~--lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKN--ADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTT--SSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHH--hcCcccCCceeE
Confidence 4689999999999 8899999999999999999874 379999999999999999864 899999999 88
Q ss_pred EE
Q psy9171 99 VS 100 (118)
Q Consensus 99 ~V 100 (118)
.|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 65
No 129
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.70 E-value=1.9e-17 Score=119.73 Aligned_cols=78 Identities=17% Similarity=0.132 Sum_probs=71.0
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL 101 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~ 101 (118)
.++.+|||+|||+++|+++|..+|++||.|.++.++.+ +|+|||+|.+.++|..|+.. +|+..|.|++|.|.
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~--l~g~~~~g~~l~V~ 147 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEA--LNGAEIMGQTIQVD 147 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHH--HTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHH--hCCCEECCEEEEEE
Confidence 56788999999999999999999999999999999864 69999999999999999864 88999999999999
Q ss_pred eccccc
Q psy9171 102 ISGYRN 107 (118)
Q Consensus 102 ~S~~~~ 107 (118)
||..+.
T Consensus 148 ~a~~~~ 153 (165)
T 1rk8_A 148 WCFVKG 153 (165)
T ss_dssp ESEECC
T ss_pred EecCCC
Confidence 997654
No 130
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.70 E-value=5.1e-17 Score=113.19 Aligned_cols=78 Identities=8% Similarity=-0.047 Sum_probs=71.2
Q ss_pred CCCCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeee
Q psy9171 25 SDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQ 98 (118)
Q Consensus 25 ~~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v 98 (118)
....++.+|||+|||+++|+++|.++|++||.|.++.++.+ +|+|||+|.+.++|..|+.. +|+..+.||+|
T Consensus 82 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~--l~g~~~~g~~i 159 (166)
T 3md3_A 82 SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDS--MQGQDLNGRPL 159 (166)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHH--HTTCEETTEEC
T ss_pred CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH--hCCCccCCcEE
Confidence 34477889999999999999999999999999999999854 68999999999999999854 88999999999
Q ss_pred EEEecc
Q psy9171 99 VSLISG 104 (118)
Q Consensus 99 ~V~~S~ 104 (118)
.|.||+
T Consensus 160 ~v~~a~ 165 (166)
T 3md3_A 160 RINWAA 165 (166)
T ss_dssp EEEESC
T ss_pred EEEecC
Confidence 999985
No 131
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.70 E-value=3.9e-17 Score=112.88 Aligned_cols=81 Identities=11% Similarity=0.016 Sum_probs=71.3
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCc---eeEEEEecc-----CceEEEeecchhhhhcccccccccceeeCCeeeE
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGR---VTNVLVLKG-----KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQV 99 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~---V~~v~l~~~-----kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~ 99 (118)
.++.+|||+|||+++|++||.++|++||. |..+.++.+ ||+|||+|.+.++|..|+. +|+..+.||+|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~---~~g~~~~gr~i~ 91 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK---KDRESMGHRYIE 91 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG---GTTEEETTEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh---cCCCeECCeEEE
Confidence 45788999999999999999999999999 889998753 7899999999999999985 689999999999
Q ss_pred EEeccccchHHH
Q psy9171 100 SLISGYRNRQSA 111 (118)
Q Consensus 100 V~~S~~~~~~~~ 111 (118)
|.+|+.+..+.+
T Consensus 92 V~~a~~~~~~~~ 103 (118)
T 2db1_A 92 VFKSHRTEMDWV 103 (118)
T ss_dssp EEEECHHHHHHH
T ss_pred EEECCHHHHHHH
Confidence 999966544433
No 132
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=9.1e-18 Score=116.14 Aligned_cols=83 Identities=6% Similarity=0.012 Sum_probs=71.0
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec------cCceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK------GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL 101 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~------~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~ 101 (118)
.++.+|||+|||+++|+++|.++|++||.|.++.++. .+|+|||+|++.++|..|+. +|+..+.||+|.|.
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~---~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC---RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT---SCSBCSTTSCBEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH---hCCCeECCcEEEEE
Confidence 5678999999999999999999999999998743332 27899999999999999985 78999999999999
Q ss_pred eccccchHHHHH
Q psy9171 102 ISGYRNRQSAAL 113 (118)
Q Consensus 102 ~S~~~~~~~~~~ 113 (118)
+|+.+...+...
T Consensus 100 ~a~~~~~~~~~~ 111 (124)
T 1wel_A 100 PITKKGMLEKID 111 (124)
T ss_dssp EECHHHHHHHHH
T ss_pred ECCHHHHHHHHH
Confidence 997765554443
No 133
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.70 E-value=3.6e-17 Score=114.08 Aligned_cols=77 Identities=13% Similarity=0.053 Sum_probs=70.7
Q ss_pred CCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccC------ceEEEeecchhhhhcccccccccceeeCCeeeEEEe
Q psy9171 29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGK------NQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLI 102 (118)
Q Consensus 29 PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~k------gqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~ 102 (118)
|+++|||+|||+++|+++|.++|++||.|.++.+++++ |+|||+|.+.++|..|+.. +|+..+.|+++.+.+
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~--l~~~~~~g~~l~v~~ 78 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT--LNGLRLQTKTIKVSY 78 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH--HTTCEETTEECEEEE
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHH--cCCCccCCceEEEEe
Confidence 57899999999999999999999999999999998654 8999999999999999854 789999999999999
Q ss_pred ccccc
Q psy9171 103 SGYRN 107 (118)
Q Consensus 103 S~~~~ 107 (118)
++.+.
T Consensus 79 ~~~~~ 83 (167)
T 1fxl_A 79 ARPSS 83 (167)
T ss_dssp CCCCC
T ss_pred cCCCc
Confidence 98654
No 134
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.70 E-value=4.4e-18 Score=111.68 Aligned_cols=73 Identities=16% Similarity=0.107 Sum_probs=63.8
Q ss_pred EEEeCCCCCcccHHHHHHhccCCC--ceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEEec
Q psy9171 32 VIHIRNIPNEVTEAEIIHLGIPFG--RVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLIS 103 (118)
Q Consensus 32 vL~V~NLP~~vte~dL~~Lf~~fG--~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S 103 (118)
+|||+|||+++|+++|.++|++|| .|.++.++.+ ||+|||+|++.++|..|+.. +|+..+.||+|.|.++
T Consensus 3 ~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~--l~g~~~~gr~i~V~~~ 80 (90)
T 3p5t_L 3 ALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDL--LPKRELHGQNPVVTPS 80 (90)
T ss_dssp -CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHH--GGGSCSSSCCCEECCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHH--cCCCeeCCEEEEEEEC
Confidence 699999999999999999999999 9999998753 68999999999999999864 8999999999999998
Q ss_pred ccc
Q psy9171 104 GYR 106 (118)
Q Consensus 104 ~~~ 106 (118)
...
T Consensus 81 ~~~ 83 (90)
T 3p5t_L 81 NKL 83 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 754
No 135
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.70 E-value=2.9e-17 Score=116.68 Aligned_cols=79 Identities=13% Similarity=0.192 Sum_probs=71.7
Q ss_pred CCCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeE
Q psy9171 26 DFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQV 99 (118)
Q Consensus 26 ~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~ 99 (118)
...++.+|||+|||+++|+++|.++|++||.|.++.++.+ ||+|||+|.+.++|..|+.. +|+..+.|++|.
T Consensus 66 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--l~g~~~~g~~l~ 143 (158)
T 2kn4_A 66 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA--MDGAVLDGRELR 143 (158)
T ss_dssp CCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHH--STTEESSSSEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHH--hCCCEECCeEEE
Confidence 3356889999999999999999999999999999999753 68999999999999999854 889999999999
Q ss_pred EEecccc
Q psy9171 100 SLISGYR 106 (118)
Q Consensus 100 V~~S~~~ 106 (118)
|.+|+.+
T Consensus 144 v~~a~~~ 150 (158)
T 2kn4_A 144 VQMARYG 150 (158)
T ss_dssp EEEECCS
T ss_pred EEECCCC
Confidence 9999865
No 136
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3e-17 Score=111.20 Aligned_cols=78 Identities=18% Similarity=0.214 Sum_probs=70.2
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc-----CceEEEeecchhhhhcccccccccceee--------C
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG-----KNQLLLHLEAEIIHLGIPFGRVTNVLVL--------K 94 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~-----kgqAFVEm~~~e~A~~ai~~~~~n~~~i--------~ 94 (118)
.++..|||+|||+++|+++|.++|++||.|.++.++.+ +|+|||+|.+.++|..|+.. +|+..+ .
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~--l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGH--FNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHH--HBTCCCCCCTTSCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHH--hCCCEEcCCccccCC
Confidence 56789999999999999999999999999999999864 68999999999999999864 888888 6
Q ss_pred CeeeEEEeccccc
Q psy9171 95 GKNQVSLISGYRN 107 (118)
Q Consensus 95 Gr~v~V~~S~~~~ 107 (118)
|+++.+.||+.++
T Consensus 101 ~~~l~v~~a~p~~ 113 (114)
T 1x5o_A 101 TEPLLCKFSGPSS 113 (114)
T ss_dssp SSCBEEEECCCSC
T ss_pred CCceeEEccCCCC
Confidence 8889999998543
No 137
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=2.7e-17 Score=108.19 Aligned_cols=77 Identities=16% Similarity=0.051 Sum_probs=68.7
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEE-Eecc--CceEEEeecchhhhhcccccccccceeeCCeeeEEEecc
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVL-VLKG--KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISG 104 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~-l~~~--kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~ 104 (118)
.++++|||+|||+++|+++|.++|++||.|.+++ ++.+ .+.|||+|.+.++|..|+.. +|+..+.||+|.|.+|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~--l~g~~~~g~~l~V~~a~ 90 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDK--LNGFQLENFTLKVAYIP 90 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHH--HTTCBCSSCBCEEEECC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHH--hCCCEECCcEEEEEEcC
Confidence 3478899999999999999999999999999994 6654 35599999999999999864 89999999999999997
Q ss_pred cc
Q psy9171 105 YR 106 (118)
Q Consensus 105 ~~ 106 (118)
.+
T Consensus 91 ~~ 92 (96)
T 2e44_A 91 DE 92 (96)
T ss_dssp CC
T ss_pred cc
Confidence 65
No 138
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=8.2e-17 Score=106.13 Aligned_cols=76 Identities=16% Similarity=0.170 Sum_probs=66.2
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCc-eEEEeecchhhhhcccccccccceeeCCeeeEEEecccc
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKN-QLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGYR 106 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kg-qAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~~ 106 (118)
.+++.|||+|||+++|+++|.++|++||.|.++.+-+..+ +|||+|.+.++|..|+. +|+..+.|++|.|.++..+
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~---l~g~~~~g~~l~V~~a~~~ 82 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS---QSQHSLGGHRLRVRPREQK 82 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT---CSCCEETTEECCCBCSCCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh---cCCeEECCEEEEEEECCcC
Confidence 5678999999999999999999999999999983322222 99999999999999984 8899999999999988654
No 139
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=8.1e-17 Score=108.50 Aligned_cols=76 Identities=11% Similarity=0.094 Sum_probs=67.8
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeE-EEEec-----cCceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTN-VLVLK-----GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL 101 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~-v~l~~-----~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~ 101 (118)
.++.+|||+|||+++|++||.++|++||.|.+ +.++. .+|+|||+|++.++|..|+. .|+..+.||.|.|.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~---~~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALK---KHKERIGHRYIEIF 89 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHT---TTTCCSSSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHH---hCcchhCCcEEEEE
Confidence 56789999999999999999999999999987 77753 27999999999999999985 37999999999999
Q ss_pred ecccc
Q psy9171 102 ISGYR 106 (118)
Q Consensus 102 ~S~~~ 106 (118)
.|+.+
T Consensus 90 ~~~~~ 94 (104)
T 1wg5_A 90 KSSRA 94 (104)
T ss_dssp EECTT
T ss_pred ECCHH
Confidence 98654
No 140
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.68 E-value=8e-18 Score=117.60 Aligned_cols=78 Identities=18% Similarity=0.204 Sum_probs=69.9
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeE--EEEecc------CceEEEeecchhhhhcccccccccce----eeCC
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTN--VLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVL----VLKG 95 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~--v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~----~i~G 95 (118)
.++++|||+|||+++||++|.++|++||.|.. ++++.+ ||+|||+|++. +|..|+.. +|+. .+.|
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~--l~g~~~~~~~~g 97 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQI--LQALHPPLTIDG 97 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHH--HTTCCCSCCGGG
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHH--hcCCCCCccCCC
Confidence 67899999999999999999999999999965 888753 69999999999 99999864 7888 9999
Q ss_pred eeeEEEeccccch
Q psy9171 96 KNQVSLISGYRNR 108 (118)
Q Consensus 96 r~v~V~~S~~~~~ 108 (118)
|+|.|.+++.+.+
T Consensus 98 r~l~V~~a~~~~~ 110 (131)
T 2m2b_A 98 KTINVEFAKGSKR 110 (131)
T ss_dssp CCCCCEECCCSCC
T ss_pred EEEEEEECCCCCC
Confidence 9999999987644
No 141
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=1.9e-17 Score=104.50 Aligned_cols=69 Identities=13% Similarity=0.106 Sum_probs=63.7
Q ss_pred EEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEEec
Q psy9171 32 VIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLIS 103 (118)
Q Consensus 32 vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S 103 (118)
+|||+|||+++|+++|.++|++||.|.++.+..+ +|+|||+|.+.++|..|+.. +| ..+.|+++.+.+|
T Consensus 2 ~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~--~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 2 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ--SR-HELDSKTIDPKVA 76 (77)
T ss_dssp CEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHT--TT-CCCSSCCCEEEEC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHh--CC-CccCCEEEEEEec
Confidence 6999999999999999999999999999999853 68999999999999999864 66 9999999999886
No 142
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.68 E-value=7.3e-18 Score=109.76 Aligned_cols=75 Identities=17% Similarity=0.140 Sum_probs=65.1
Q ss_pred cEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEEecc
Q psy9171 31 RVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISG 104 (118)
Q Consensus 31 ~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~ 104 (118)
++|||+|||+++|+++|.++|++||.|.++.+..+ +|+|||+|++.+ |..|+.. +|+..+.|++|.|.+|.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~--l~g~~~~g~~l~V~~a~ 78 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAK--LDNTDFMGRTIRVTEAN 78 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHT--SCSSCCSSSSCSEEEC-
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHH--hCCCEECCeEEEEEEcC
Confidence 47999999999999999999999999999999853 789999999999 9999854 88999999999999998
Q ss_pred ccch
Q psy9171 105 YRNR 108 (118)
Q Consensus 105 ~~~~ 108 (118)
....
T Consensus 79 ~~~~ 82 (90)
T 2ki2_A 79 PKKS 82 (90)
T ss_dssp ----
T ss_pred CCCC
Confidence 7544
No 143
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.68 E-value=8.5e-17 Score=122.70 Aligned_cols=77 Identities=13% Similarity=0.207 Sum_probs=72.0
Q ss_pred CCCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccC-ceEEEeecchhhhhcccccccccceeeC-CeeeEEEec
Q psy9171 26 DFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGK-NQLLLHLEAEIIHLGIPFGRVTNVLVLK-GKNQVSLIS 103 (118)
Q Consensus 26 ~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~k-gqAFVEm~~~e~A~~ai~~~~~n~~~i~-Gr~v~V~~S 103 (118)
..+|+++|||+|||+++|+++|.++|++||.|.++.+++++ |+|||+|.+.++|..|+.. +|+..+. |++|.|.||
T Consensus 203 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~A~~~--l~g~~~~~g~~l~v~~a 280 (282)
T 3pgw_A 203 ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDA--LQGFKITQNNAMKISFA 280 (282)
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCCCcEEEEEeCCHHHHHHHHHH--cCCcEeCCCCEEEEEEe
Confidence 44688999999999999999999999999999999999875 9999999999999999865 8999999 999999999
Q ss_pred c
Q psy9171 104 G 104 (118)
Q Consensus 104 ~ 104 (118)
+
T Consensus 281 k 281 (282)
T 3pgw_A 281 K 281 (282)
T ss_pred c
Confidence 6
No 144
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.68 E-value=1.1e-16 Score=112.90 Aligned_cols=77 Identities=16% Similarity=0.171 Sum_probs=70.1
Q ss_pred CCCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeE
Q psy9171 26 DFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQV 99 (118)
Q Consensus 26 ~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~ 99 (118)
..+++++|||+|||+++|+++|.++|++||.|.++.+..+ +|+|||+|++.++|..|+.. +|+..+.||+|.
T Consensus 90 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~--l~g~~~~g~~l~ 167 (172)
T 2g4b_A 90 PLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG--LNGMQLGDKKLL 167 (172)
T ss_dssp CCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHH--HTTCEETTEECE
T ss_pred CCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH--cCCCEECCeEEE
Confidence 3356789999999999999999999999999999999865 68999999999999999854 889999999999
Q ss_pred EEecc
Q psy9171 100 SLISG 104 (118)
Q Consensus 100 V~~S~ 104 (118)
|.+|.
T Consensus 168 V~~As 172 (172)
T 2g4b_A 168 VQRAS 172 (172)
T ss_dssp EEECC
T ss_pred EEeCC
Confidence 99983
No 145
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.68 E-value=4.2e-17 Score=108.52 Aligned_cols=75 Identities=15% Similarity=0.119 Sum_probs=68.6
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc-----CceEEEeecchhhhhcccccccccceeeCCeeeEEEe
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG-----KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLI 102 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~-----kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~ 102 (118)
.++++|||+|||+++|+++|.++|++||.|.++.++.+ ||+|||+|++.++|..|+. |+..+.|+++.|.+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~----~~~~~~g~~l~v~~ 82 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE----SQINFHGKKLKLGP 82 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT----CCCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh----CCCeECCEEEEEEE
Confidence 56789999999999999999999999999999999863 6999999999999999985 78999999999999
Q ss_pred cccc
Q psy9171 103 SGYR 106 (118)
Q Consensus 103 S~~~ 106 (118)
+..+
T Consensus 83 a~~~ 86 (102)
T 2xs2_A 83 AIRK 86 (102)
T ss_dssp EEEC
T ss_pred CCcC
Confidence 8643
No 146
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.67 E-value=7e-17 Score=113.23 Aligned_cols=77 Identities=10% Similarity=0.141 Sum_probs=70.3
Q ss_pred CCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEEe
Q psy9171 29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLI 102 (118)
Q Consensus 29 PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~ 102 (118)
|+++|||+|||+++|+++|.++|++||.|.++.++++ +|+|||+|.+.++|..|+.. +|+..+.|+++.+.+
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~--l~~~~~~g~~l~v~~ 79 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKV--LNGITVRNKRLKVSY 79 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHH--HTTCEETTEECEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHh--cCCCEeCCcEEEEEe
Confidence 7889999999999999999999999999999999853 48999999999999999854 789999999999999
Q ss_pred ccccc
Q psy9171 103 SGYRN 107 (118)
Q Consensus 103 S~~~~ 107 (118)
++.+.
T Consensus 80 ~~~~~ 84 (168)
T 1b7f_A 80 ARPGG 84 (168)
T ss_dssp CCCCS
T ss_pred cCCCc
Confidence 97543
No 147
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.67 E-value=3e-17 Score=103.60 Aligned_cols=69 Identities=14% Similarity=0.151 Sum_probs=63.4
Q ss_pred EEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEEec
Q psy9171 32 VIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLIS 103 (118)
Q Consensus 32 vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S 103 (118)
.|||+|||+++|+++|.++|++||.|.++.+..+ +|+|||+|++.++|..|+. +|+..+.|+++.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~---~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE---IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS---SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH---CCCCEECCEEEEEEeC
Confidence 3899999999999999999999999999998753 5899999999999999974 7899999999999876
No 148
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1e-16 Score=108.54 Aligned_cols=75 Identities=12% Similarity=0.197 Sum_probs=67.0
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc-----CceEEEeecchhhhhcccccccccceeeCCeeeEEEe
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG-----KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLI 102 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~-----kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~ 102 (118)
.++.+|||+|||+++||+||.++|++||.+ ++.++.+ ||+|||||++.++|..|+. +|+..+.||.|.|..
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~---~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA---KDKANMQHRYVELFL 88 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT---TSSCCSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH---hCCCeECCcEEEEEE
Confidence 567899999999999999999999999955 8888753 6899999999999999983 589999999999998
Q ss_pred cccc
Q psy9171 103 SGYR 106 (118)
Q Consensus 103 S~~~ 106 (118)
|+..
T Consensus 89 ~~~~ 92 (102)
T 1wez_A 89 NSTA 92 (102)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 8654
No 149
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.67 E-value=1e-16 Score=119.20 Aligned_cols=81 Identities=17% Similarity=0.101 Sum_probs=71.2
Q ss_pred CCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEE
Q psy9171 27 FKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVS 100 (118)
Q Consensus 27 ~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V 100 (118)
..|+++|||+|||+++||++|.++|++||.|.++.++++ +|+|||+|.+.++|..|+.. +|+..+.||.+.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~--~~~~~~~g~~i~~ 89 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT--MNFDVIKGKPVRI 89 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH--HTTCEETTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHH--hhhhhcCCccccc
Confidence 368899999999999999999999999999999999853 68999999999999999854 8899999999999
Q ss_pred EeccccchH
Q psy9171 101 LISGYRNRQ 109 (118)
Q Consensus 101 ~~S~~~~~~ 109 (118)
.++......
T Consensus 90 ~~~~~~~~~ 98 (213)
T 4f02_A 90 MWSQRDPSL 98 (213)
T ss_dssp EECCCCTHH
T ss_pred ccccccccc
Confidence 999775543
No 150
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.67 E-value=2.8e-17 Score=111.28 Aligned_cols=83 Identities=8% Similarity=0.059 Sum_probs=72.1
Q ss_pred CCCCCcEEEeCCCCCcccHHHHHHhccCCCc---eeEEEEecc-----CceEEEeecchhhhhcccccccccceeeCCee
Q psy9171 26 DFKPSRVIHIRNIPNEVTEAEIIHLGIPFGR---VTNVLVLKG-----KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKN 97 (118)
Q Consensus 26 ~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~---V~~v~l~~~-----kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~ 97 (118)
...++.+|||+|||+++|++||.++|++||. |..+.++.+ ||+|||+|++.++|..|+. +|+..+.||.
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~---~~~~~~~gr~ 83 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE---KHRMYMGQRY 83 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT---TTTCCSSSSC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH---hCcceeCCeE
Confidence 3366789999999999999999999999998 889998753 6899999999999999975 6899999999
Q ss_pred eEEEeccccchHHH
Q psy9171 98 QVSLISGYRNRQSA 111 (118)
Q Consensus 98 v~V~~S~~~~~~~~ 111 (118)
|.|.+|+.+..+.+
T Consensus 84 i~V~~a~~~~~~~~ 97 (107)
T 2lmi_A 84 VEVYEINNEDVDAL 97 (107)
T ss_dssp CCCEECCHHHHHHH
T ss_pred EEEEECCHHHHHHH
Confidence 99999976544433
No 151
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.67 E-value=5.8e-17 Score=116.18 Aligned_cols=81 Identities=9% Similarity=-0.015 Sum_probs=71.3
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCc---eeEEEEecc-----CceEEEeecchhhhhcccccccccceeeCCeeeE
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGR---VTNVLVLKG-----KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQV 99 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~---V~~v~l~~~-----kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~ 99 (118)
.++.+|||+|||+++||+||.++|++||. |.++.++.+ ||+|||+|++.++|..|+. +|+..+.||+|.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~---~~g~~l~gr~i~ 118 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK---KDRESMGHRYIE 118 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT---TTEEESSSSEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh---cCCCEECCEEEE
Confidence 45788999999999999999999999999 888988753 6899999999999999974 789999999999
Q ss_pred EEeccccchHHH
Q psy9171 100 SLISGYRNRQSA 111 (118)
Q Consensus 100 V~~S~~~~~~~~ 111 (118)
|..|+.+..+.+
T Consensus 119 V~~a~~~e~~~~ 130 (136)
T 2hgl_A 119 VFKSHRTEMDWV 130 (136)
T ss_dssp EEECCHHHHHHH
T ss_pred EEECChHHHHHH
Confidence 999976544443
No 152
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.67 E-value=2.8e-17 Score=116.27 Aligned_cols=78 Identities=12% Similarity=0.175 Sum_probs=70.9
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL 101 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~ 101 (118)
.++++|||+|||+++|+++|.++|++||.|.++.++.+ ||+|||+|++.++|..|+.. +|+..+.|++|.|.
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~--l~g~~i~g~~l~V~ 122 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA--MDGAVLDGRELRVQ 122 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTT--TTTCCSSSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHH--cCCCEECCEEEEEE
Confidence 45778999999999999999999999999999999753 67999999999999999864 88999999999999
Q ss_pred eccccc
Q psy9171 102 ISGYRN 107 (118)
Q Consensus 102 ~S~~~~ 107 (118)
+|+.+.
T Consensus 123 ~a~~~~ 128 (135)
T 2lea_A 123 MARYGR 128 (135)
T ss_dssp ECCCCC
T ss_pred ECCCCC
Confidence 998654
No 153
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.67 E-value=1.5e-17 Score=110.50 Aligned_cols=77 Identities=12% Similarity=-0.071 Sum_probs=67.9
Q ss_pred CCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec------cCceEEEeecchhhhhcccccccccceeeCCeeeEE
Q psy9171 27 FKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK------GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVS 100 (118)
Q Consensus 27 ~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~------~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V 100 (118)
..+++.|||+|||+++|+++|.++|++||.|.. .++. .||+|||+|++.++|..|+. +|+..+.|++|.|
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~---l~g~~~~g~~l~V 89 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE---LTGLKVFGNEIKL 89 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH---GGGCCBTTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh---cCCcEECCcEEEE
Confidence 357889999999999999999999999998877 3332 37999999999999999983 8899999999999
Q ss_pred Eeccccc
Q psy9171 101 LISGYRN 107 (118)
Q Consensus 101 ~~S~~~~ 107 (118)
.+|+.+.
T Consensus 90 ~~a~~~~ 96 (101)
T 1fj7_A 90 EKPKGRD 96 (101)
T ss_dssp ECCSCCC
T ss_pred EEcCCCC
Confidence 9998754
No 154
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.49 E-value=4.6e-18 Score=115.99 Aligned_cols=79 Identities=9% Similarity=0.043 Sum_probs=71.2
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeE--------EEEecc------CceEEEeecchhhhhcccccccccceee
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTN--------VLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVL 93 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~--------v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i 93 (118)
+|+++|||+|||+++|+++|.++|++||.|.. +.++.+ +|+|||+|.+.++|..|+.. +|+..+
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~--l~g~~~ 82 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDW--FDGKEF 82 (116)
Confidence 67889999999999999999999999999998 777643 68999999999999999864 889999
Q ss_pred CCeeeEEEeccccch
Q psy9171 94 KGKNQVSLISGYRNR 108 (118)
Q Consensus 94 ~Gr~v~V~~S~~~~~ 108 (118)
.|++|.|.+|+.+..
T Consensus 83 ~g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 83 SGNPIKVSFATRRAD 97 (116)
Confidence 999999999976543
No 155
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.67 E-value=2e-17 Score=104.18 Aligned_cols=69 Identities=12% Similarity=0.043 Sum_probs=63.0
Q ss_pred EEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEEec
Q psy9171 32 VIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLIS 103 (118)
Q Consensus 32 vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S 103 (118)
+|||+|||+++|+++|.++|++||.|.++.+..+ +|+|||+|++.++|..|+. .++..+.|+++.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~---~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME---KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT---TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH---hCCCeECCEEEEEEEC
Confidence 4899999999999999999999999999998753 7899999999999999985 4788999999999875
No 156
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.66 E-value=8.1e-17 Score=112.39 Aligned_cols=80 Identities=11% Similarity=0.019 Sum_probs=71.8
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEeccccc
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGYRN 107 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~~~ 107 (118)
.++++|||+|+ ++|+++|.++|++||.|.++.+...||+|||+|++.++|..|+.. +|+..+.|++|.|.+|+.+.
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~--lng~~~~g~~l~V~~a~~~~ 112 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAE--LNGTQVESVQLKVNIARKQP 112 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHHHHHHHHHH--HTTCBCSSCBCEEEECCSSC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHHHHHHHHHH--hCCCEECCeEEEEEEeCCCC
Confidence 67899999995 699999999999999999999998899999999999999999854 88999999999999999876
Q ss_pred hHHH
Q psy9171 108 RQSA 111 (118)
Q Consensus 108 ~~~~ 111 (118)
..+.
T Consensus 113 ~~~~ 116 (121)
T 2bz2_A 113 MLDA 116 (121)
T ss_dssp C---
T ss_pred CCCC
Confidence 6553
No 157
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.66 E-value=4e-17 Score=122.60 Aligned_cols=87 Identities=23% Similarity=0.188 Sum_probs=73.1
Q ss_pred eecchheeeeeccC---CCCCCCCCCcEEEeCCCCCcccHHHHHHhccCCCce--eEEEEecc----CceEEEeecchhh
Q psy9171 8 VKYTLVMVVQAKLD---RQKSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRV--TNVLVLKG----KNQLLLHLEAEII 78 (118)
Q Consensus 8 ~~~~~~~~~~~~~~---~~~~~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V--~~v~l~~~----kgqAFVEm~~~e~ 78 (118)
.+|+.++.++++.+ ......+|+++|||+|||+++|+++|.++|++||.| .+++++++ +|+|||||++.++
T Consensus 98 ~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~ 177 (205)
T 3tyt_A 98 KDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSD 177 (205)
T ss_dssp EECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHH
T ss_pred cccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHH
Confidence 46666666666542 112345899999999999999999999999999999 89999864 5899999999999
Q ss_pred hhcccccccccceeeCCe
Q psy9171 79 HLGIPFGRVTNVLVLKGK 96 (118)
Q Consensus 79 A~~ai~~~~~n~~~i~Gr 96 (118)
|..|+.. +|+..+.|+
T Consensus 178 A~~Ai~~--lng~~~~g~ 193 (205)
T 3tyt_A 178 ALETLGF--LNHYQMKNP 193 (205)
T ss_dssp HHHHHHH--HTTCEECCS
T ss_pred HHHHHHH--hCCCCccCC
Confidence 9999865 999999998
No 158
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.66 E-value=1.4e-16 Score=114.59 Aligned_cols=79 Identities=15% Similarity=0.175 Sum_probs=72.7
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL 101 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~ 101 (118)
.++++|||+|||+++|+++|.++|++||.|.++.+..+ +|+|||+|.+.++|..|+.. +|+..+.|++|.|.
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~--l~g~~~~g~~l~v~ 189 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG--LNGMQLGDKKLLVQ 189 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHH--HTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHH--cCCCEECCEEEEEE
Confidence 57899999999999999999999999999999999864 78999999999999999864 88999999999999
Q ss_pred eccccch
Q psy9171 102 ISGYRNR 108 (118)
Q Consensus 102 ~S~~~~~ 108 (118)
+|+.+..
T Consensus 190 ~a~~~~~ 196 (198)
T 2yh0_A 190 RASVGAK 196 (198)
T ss_dssp ESCCCCC
T ss_pred ECCCCCC
Confidence 9987654
No 159
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.66 E-value=1.4e-16 Score=116.02 Aligned_cols=78 Identities=12% Similarity=0.123 Sum_probs=71.6
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL 101 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~ 101 (118)
.++++|||+|||+++|+++|.++|++||.|.++.++.+ +|+|||+|.+.++|..|+.. +|+..+.||+|.|.
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~--l~g~~~~g~~i~V~ 200 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSS--MNLFDLGGQYLRVG 200 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH--HTTCBCSSSBCEEE
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHH--ccCCEeCCcEEEEE
Confidence 56789999999999999999999999999999999865 78999999999999999854 88999999999999
Q ss_pred eccccc
Q psy9171 102 ISGYRN 107 (118)
Q Consensus 102 ~S~~~~ 107 (118)
||....
T Consensus 201 ~a~~~~ 206 (216)
T 2qfj_A 201 KAVTPP 206 (216)
T ss_dssp ECSSCS
T ss_pred EecCCC
Confidence 998753
No 160
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.65 E-value=1.9e-16 Score=121.10 Aligned_cols=77 Identities=14% Similarity=0.195 Sum_probs=72.4
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEecccc
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGYR 106 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~~ 106 (118)
.++++|||+|||+++|+++|.++|++||.|.++.+.+.||+|||+|.+.++|..|+.. +|+..+.|+++.|.++...
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~A~~A~~~--l~g~~i~g~~l~v~~a~~~ 96 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAE--LDGTILKSRPLRIRFATHG 96 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETTTTEEEEECSSHHHHHHHHHH--HTTCEETTEECEEEECCCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCCCcEEEEEECCHHHHHHHHHH--cCCcEECCceeEeeecccC
Confidence 6788999999999999999999999999999999999999999999999999999854 8899999999999999764
No 161
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.65 E-value=2e-16 Score=113.57 Aligned_cols=77 Identities=12% Similarity=0.066 Sum_probs=69.1
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL 101 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~ 101 (118)
.++++|||+|||+++|+++|.++|++||.|.++.++.+ +|+|||+|.+.++|..|+. .++..+.|+++.+.
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~---~~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN---ARPHKVDGRVVEPK 87 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH---TCSCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHh---cCCCEECCEEeeee
Confidence 67899999999999999999999999999999999853 6799999999999999984 47899999999999
Q ss_pred eccccc
Q psy9171 102 ISGYRN 107 (118)
Q Consensus 102 ~S~~~~ 107 (118)
++..+.
T Consensus 88 ~~~~~~ 93 (196)
T 1l3k_A 88 RAVSRE 93 (196)
T ss_dssp ECCC--
T ss_pred cccCcc
Confidence 987653
No 162
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=2.9e-16 Score=104.20 Aligned_cols=76 Identities=11% Similarity=0.050 Sum_probs=66.0
Q ss_pred CCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEE
Q psy9171 27 FKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVS 100 (118)
Q Consensus 27 ~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V 100 (118)
.+|+++|||+|||+++|+++|.++|++|+. +.++.+ +|+|||+|++.++|..|+.. +|+..+.|++|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~---~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~--l~g~~~~g~~l~V 86 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSVR---ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEA--MEDGEIDGNKVTL 86 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCSE---EEEEECSSSCSEEEEEEEECSSHHHHHHHHHH--HTTCEETTEECEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCeE---EEEEecCCCCCcCcEEEEEECCHHHHHHHHHH--hCCCeECCeEEEE
Confidence 367899999999999999999999998864 444432 58999999999999999854 8899999999999
Q ss_pred Eeccccc
Q psy9171 101 LISGYRN 107 (118)
Q Consensus 101 ~~S~~~~ 107 (118)
.+|+.+.
T Consensus 87 ~~a~~~~ 93 (102)
T 2fc8_A 87 DWAKPKG 93 (102)
T ss_dssp EECCCCC
T ss_pred EEecCCC
Confidence 9998754
No 163
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.65 E-value=2.6e-16 Score=120.02 Aligned_cols=79 Identities=14% Similarity=0.173 Sum_probs=72.3
Q ss_pred CCCCcEEEeCCCCCcccHHHHH----HhccCCCceeEEEEec---cCceEEEeecchhhhhcccccccccceeeCCeeeE
Q psy9171 27 FKPSRVIHIRNIPNEVTEAEII----HLGIPFGRVTNVLVLK---GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQV 99 (118)
Q Consensus 27 ~~PS~vL~V~NLP~~vte~dL~----~Lf~~fG~V~~v~l~~---~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~ 99 (118)
..|+++|||+|||+++|+++|. ++|++||.|.++.+.+ .||+|||+|.+.++|..|+.. +|+..+.||+|.
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~--l~g~~~~g~~l~ 83 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRS--MQGFPFYDKPMR 83 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHH--hcCCeeCCcEEE
Confidence 4889999999999999999966 8999999999999875 479999999999999999854 889999999999
Q ss_pred EEeccccc
Q psy9171 100 SLISGYRN 107 (118)
Q Consensus 100 V~~S~~~~ 107 (118)
|.|++.++
T Consensus 84 v~~a~~~~ 91 (282)
T 3pgw_A 84 IQYAKTDS 91 (282)
T ss_pred EEEeccCc
Confidence 99997755
No 164
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.65 E-value=9.2e-17 Score=120.59 Aligned_cols=80 Identities=20% Similarity=0.095 Sum_probs=73.5
Q ss_pred CCCCCCcEEEeCCCCC-cccHHHHHHhccCCCceeEEEEecc-CceEEEeecchhhhhcccccccccceeeCCeeeEEEe
Q psy9171 25 SDFKPSRVIHIRNIPN-EVTEAEIIHLGIPFGRVTNVLVLKG-KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLI 102 (118)
Q Consensus 25 ~~~~PS~vL~V~NLP~-~vte~dL~~Lf~~fG~V~~v~l~~~-kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~ 102 (118)
...+|+++|||+|||+ ++|+++|.++|++||.|.++.++.+ +|+|||+|.+.++|..|+.. +|+..+.|++|.|.+
T Consensus 29 ~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~--l~g~~~~g~~l~v~~ 106 (229)
T 2adc_A 29 LAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSH--LNGHKLHGKPIRITL 106 (229)
T ss_dssp GGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHH--HTTCBCSSSBCEEEC
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHH--hCCCeECCeEEEEEE
Confidence 3347899999999999 9999999999999999999999976 59999999999999999854 889999999999999
Q ss_pred cccc
Q psy9171 103 SGYR 106 (118)
Q Consensus 103 S~~~ 106 (118)
++.+
T Consensus 107 a~~~ 110 (229)
T 2adc_A 107 SKHQ 110 (229)
T ss_dssp CSCC
T ss_pred ecCc
Confidence 9865
No 165
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.64 E-value=2.6e-16 Score=117.01 Aligned_cols=77 Identities=16% Similarity=0.127 Sum_probs=70.5
Q ss_pred CCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc----CceEEEeecchhhhhcccccccccceeeCCeeeEEEecc
Q psy9171 29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG----KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISG 104 (118)
Q Consensus 29 PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~----kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~ 104 (118)
++..|||+|||+++|+++|.++|++||.|..+.++.+ ||+|||+|.+.++|..|+.. +|+..|.||+|.|.+|+
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~--lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEK--MNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHH--HTTCEETTEECEEEECC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHH--hCCCEECCEEEEEEEcC
Confidence 4668999999999999999999999999999999853 78999999999999999864 89999999999999998
Q ss_pred ccc
Q psy9171 105 YRN 107 (118)
Q Consensus 105 ~~~ 107 (118)
.+.
T Consensus 180 ~~~ 182 (213)
T 4f02_A 180 SRK 182 (213)
T ss_dssp CHH
T ss_pred CCc
Confidence 654
No 166
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.64 E-value=8.9e-17 Score=110.41 Aligned_cols=73 Identities=7% Similarity=-0.031 Sum_probs=65.8
Q ss_pred CcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCee-----eEEEecc
Q psy9171 30 SRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKN-----QVSLISG 104 (118)
Q Consensus 30 S~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~-----v~V~~S~ 104 (118)
+..|||+|||+++|++||.++|++||.|.++.++.+ |+|||+|++.++|..|+.. +|+..+.|++ +.+..++
T Consensus 16 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-g~afV~f~~~~~a~~Ai~~--l~g~~~~gr~~~~~~i~v~~~~ 92 (115)
T 3beg_B 16 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKEDMTYAVRK--LDNTKFRSHEGETAYIRVKVDG 92 (115)
T ss_dssp -CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-SEEEEEESSHHHHHHHHHH--HTTCBCCCTTSCCCBCEEEECC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-CEEEEEECCHHHHHHHHHH--hCCCEECCcEeeeEEEEeccCC
Confidence 467999999999999999999999999999999877 9999999999999999864 8999999999 7777765
Q ss_pred c
Q psy9171 105 Y 105 (118)
Q Consensus 105 ~ 105 (118)
.
T Consensus 93 ~ 93 (115)
T 3beg_B 93 P 93 (115)
T ss_dssp -
T ss_pred C
Confidence 4
No 167
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.64 E-value=2.4e-16 Score=109.71 Aligned_cols=75 Identities=12% Similarity=-0.019 Sum_probs=68.4
Q ss_pred cEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc-----CceEEEeecchhhhhcccccccccceeeCCeeeEEEeccc
Q psy9171 31 RVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG-----KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGY 105 (118)
Q Consensus 31 ~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~-----kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~ 105 (118)
|+|||+|||+++|+++|.++|++||.|.++.++.+ +|+|||+|.+.++|..|+.. +|+..+.|+++.+.++..
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~--l~~~~~~g~~i~v~~~~~ 78 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQT--LNGKQIENNIVKINWAFQ 78 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHH--HTTCEETTEECEEEECCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHH--cCCCccCCCeeEEEEcCC
Confidence 68999999999999999999999999999999853 58999999999999999854 889999999999999965
Q ss_pred cc
Q psy9171 106 RN 107 (118)
Q Consensus 106 ~~ 107 (118)
+.
T Consensus 79 ~~ 80 (166)
T 3md3_A 79 SQ 80 (166)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 168
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.63 E-value=5.6e-16 Score=111.25 Aligned_cols=76 Identities=9% Similarity=0.117 Sum_probs=67.6
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL 101 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~ 101 (118)
.++++|||+|||+++|+++|.++|++||.|.++.++.+ +|+|||+|++.++|.+|+. .++..+.|++|.|.
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~---~~~~~~~G~~i~v~ 178 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI---QKYHTVNGHNCEVR 178 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH---CSCCEETTEECEEE
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHH---hCCcEECCEEEEEE
Confidence 56789999999999999999999999999999999853 6899999999999999985 36899999999999
Q ss_pred ecccc
Q psy9171 102 ISGYR 106 (118)
Q Consensus 102 ~S~~~ 106 (118)
+|..+
T Consensus 179 ~a~~k 183 (196)
T 1l3k_A 179 KALSK 183 (196)
T ss_dssp ECC--
T ss_pred ecCCh
Confidence 99764
No 169
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=2.2e-16 Score=111.52 Aligned_cols=80 Identities=11% Similarity=0.086 Sum_probs=68.4
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCce----eEEEEecc-----CceEEEeecchhhhhcccccccccceeeCCeee
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRV----TNVLVLKG-----KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQ 98 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V----~~v~l~~~-----kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v 98 (118)
.++.+|||+|||+++||+||.++|++||.| ..+.++.+ ||+|||+|++.++|..|+. .|+..+.||.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~---~~~~~l~gR~i 97 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALR---KHKDLLGKRYI 97 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHT---TTTEESSSCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH---hCCCeeCCeEE
Confidence 456799999999999999999999999986 57888742 7999999999999999985 47899999999
Q ss_pred EEEeccccchHH
Q psy9171 99 VSLISGYRNRQS 110 (118)
Q Consensus 99 ~V~~S~~~~~~~ 110 (118)
.|..|+.+..+.
T Consensus 98 ~V~~a~~~e~~~ 109 (123)
T 2dha_A 98 ELFRSTAAEVQQ 109 (123)
T ss_dssp CCEEECHHHHHH
T ss_pred EEEECCHHHHHH
Confidence 999996544333
No 170
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.63 E-value=3.3e-16 Score=115.71 Aligned_cols=79 Identities=16% Similarity=0.128 Sum_probs=71.9
Q ss_pred CCCCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc-----CceEEEeecchhhhhcccccccccceeeCCeeeEE
Q psy9171 26 DFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG-----KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVS 100 (118)
Q Consensus 26 ~~~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~-----kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V 100 (118)
...++.+|||+|||+++|+++|.++|++||.|.++.+..+ +|+|||+|++.++|..|+.. +|+..+.|++|.|
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~--lng~~l~Gr~l~V 161 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQ--YKGVPLDGRPMDI 161 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHH--STTCBCSSSBCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHH--hCCCEECCEEEEE
Confidence 4467889999999999999999999999999999999753 69999999999999999864 8899999999999
Q ss_pred Eecccc
Q psy9171 101 LISGYR 106 (118)
Q Consensus 101 ~~S~~~ 106 (118)
.+|...
T Consensus 162 ~~a~~~ 167 (177)
T 2f3j_A 162 QLVASQ 167 (177)
T ss_dssp EEESSG
T ss_pred EEecCC
Confidence 999764
No 171
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.63 E-value=6.1e-16 Score=109.00 Aligned_cols=76 Identities=17% Similarity=0.150 Sum_probs=70.6
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCC----C-------ceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCe
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPF----G-------RVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGK 96 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~f----G-------~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr 96 (118)
.++++|||+|||+++|+++|.++|++| | .|.++.+.+.||+|||+|.+.++|..|+ . +|+..+.|+
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~-~--~~~~~~~g~ 78 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-A--FDGIIFQGQ 78 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTTTEEEEEESSHHHHHHHG-G--GTTCEETTE
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCCCEEEEEeCCHHHHHHHH-H--hCCcEecCc
Confidence 478899999999999999999999999 7 8889999889999999999999999998 3 889999999
Q ss_pred eeEEEecccc
Q psy9171 97 NQVSLISGYR 106 (118)
Q Consensus 97 ~v~V~~S~~~ 106 (118)
++.+.+++..
T Consensus 79 ~i~v~~~~~~ 88 (172)
T 2g4b_A 79 SLKIRRPHDY 88 (172)
T ss_dssp ECEEECCSSC
T ss_pred eeeecCCccc
Confidence 9999998764
No 172
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.63 E-value=7e-16 Score=109.49 Aligned_cols=77 Identities=14% Similarity=0.110 Sum_probs=68.5
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEe--ccCceEEEeecchhhhhcccccccccceeeCCeeeEEEeccc
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVL--KGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGY 105 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~--~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~ 105 (118)
.++++|||+|||+++|+++|.++|++||.|..+ -. ..+|+|||+|.+.++|..|+.. +|+..+.||+|.|.||+.
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~A~~A~~~--l~g~~~~g~~i~v~~a~~ 173 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEE--KQGAEIDGRSVSLYYTGE 173 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-CSSSSCCSEEEEECSSHHHHHHHHHH--HTEEEETTEEEEEEECSS
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-cCCCCCceEEEEEECCHHHHHHHHHH--hCCCEECCeEEEEEecCC
Confidence 578899999999999999999999999998877 22 1379999999999999999864 889999999999999976
Q ss_pred cc
Q psy9171 106 RN 107 (118)
Q Consensus 106 ~~ 107 (118)
++
T Consensus 174 k~ 175 (175)
T 1fje_B 174 KG 175 (175)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 173
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.63 E-value=3.9e-16 Score=109.79 Aligned_cols=74 Identities=15% Similarity=0.188 Sum_probs=67.1
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc-----CceEEEeecchhhhhcccccccccceeeC---CeeeE
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG-----KNQLLLHLEAEIIHLGIPFGRVTNVLVLK---GKNQV 99 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~-----kgqAFVEm~~~e~A~~ai~~~~~n~~~i~---Gr~v~ 99 (118)
.++++|||+|||+++|+++|.++|++||.|..+.+..+ +|+|||+|++.++|..|+.. +|+..+. ||+|.
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~--l~g~~~~~g~~~~l~ 170 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKA--MHQAQTMEGCSSPMV 170 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHH--HTTSCCCTTCSSCCE
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHH--hcCCcccCCCCCCeE
Confidence 57889999999999999999999999999999999865 78999999999999999854 7877666 49999
Q ss_pred EEec
Q psy9171 100 SLIS 103 (118)
Q Consensus 100 V~~S 103 (118)
|.||
T Consensus 171 V~~a 174 (175)
T 3nmr_A 171 VKFA 174 (175)
T ss_dssp EEEC
T ss_pred EEec
Confidence 9997
No 174
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.63 E-value=7.3e-16 Score=105.73 Aligned_cols=76 Identities=17% Similarity=0.214 Sum_probs=67.8
Q ss_pred CCCcEEEeCCCCC-----cccHHHHHHhccCCCceeEEEEecc-------CceEEEeecchhhhhcccccccccceeeCC
Q psy9171 28 KPSRVIHIRNIPN-----EVTEAEIIHLGIPFGRVTNVLVLKG-------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKG 95 (118)
Q Consensus 28 ~PS~vL~V~NLP~-----~vte~dL~~Lf~~fG~V~~v~l~~~-------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~G 95 (118)
.||++|+|+||.. +-+++||.++|++||.|.++.+..+ +|+|||+|++.++|..|+.. +|+..+.|
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~--lnG~~~~G 83 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVD--LNGRYFGG 83 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHH--HTTCEETT
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHH--HCCCEECC
Confidence 7999999999973 3479999999999999999999742 79999999999999999865 99999999
Q ss_pred eeeEEEeccc
Q psy9171 96 KNQVSLISGY 105 (118)
Q Consensus 96 r~v~V~~S~~ 105 (118)
|+|.+.|+..
T Consensus 84 r~i~v~~a~~ 93 (105)
T 2pe8_A 84 RVVKACFYNL 93 (105)
T ss_dssp EECEEEECCH
T ss_pred cEEEEEEcCH
Confidence 9999999964
No 175
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.62 E-value=3.5e-16 Score=119.69 Aligned_cols=78 Identities=14% Similarity=0.066 Sum_probs=69.3
Q ss_pred CCcEEEeCCCCCcccHHHHHHhccCCC--ceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEE
Q psy9171 29 PSRVIHIRNIPNEVTEAEIIHLGIPFG--RVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVS 100 (118)
Q Consensus 29 PS~vL~V~NLP~~vte~dL~~Lf~~fG--~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V 100 (118)
....|||+|||+++||++|.++|++|| .|.++.++.+ ||+|||+|++.++|..|+.. +|+..|.||+|.|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~--lng~~~~Gr~l~V 144 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDL--LPKRELHGQNPVV 144 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTT--STTSCBTTBCCEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHH--cCCCeECCEEeEE
Confidence 345699999999999999999999999 9999999854 68999999999999999864 8899999999999
Q ss_pred Eeccccch
Q psy9171 101 LISGYRNR 108 (118)
Q Consensus 101 ~~S~~~~~ 108 (118)
.+++.++.
T Consensus 145 ~~a~~~~~ 152 (229)
T 3q2s_C 145 TPVNKQFL 152 (229)
T ss_dssp EECCHHHH
T ss_pred EECCCCcc
Confidence 99976543
No 176
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.62 E-value=9e-16 Score=107.51 Aligned_cols=74 Identities=9% Similarity=0.162 Sum_probs=68.2
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCC--eeeE
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKG--KNQV 99 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~G--r~v~ 99 (118)
.++++|||+|||+++|+++|.++|++||.|..+.+..+ +|+|||+|.+.++|..|+.. +|+..+.| ++|.
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~--l~g~~~~g~~~~l~ 164 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISA--LNNVIPEGGSQPLS 164 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH--HTTCCCTTCSSCCE
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHH--hcCCEecCCCeEEE
Confidence 67889999999999999999999999999999999864 48999999999999999854 88999988 9999
Q ss_pred EEec
Q psy9171 100 SLIS 103 (118)
Q Consensus 100 V~~S 103 (118)
|.||
T Consensus 165 V~~A 168 (168)
T 1b7f_A 165 VRLA 168 (168)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9986
No 177
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=8.2e-16 Score=106.26 Aligned_cols=73 Identities=14% Similarity=0.119 Sum_probs=66.1
Q ss_pred CcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc-----CceEEEeecchhhhhcccccccccceeeCCeeeEEEecc
Q psy9171 30 SRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG-----KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISG 104 (118)
Q Consensus 30 S~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~-----kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~ 104 (118)
+.+|||+|||+++||+||.++|++| .|.++.++.+ ||+|||+|++.++|..|+ .+|+..+.||.|.|..++
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al---~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL---KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH---HTTTEEETTEEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH---hcCCCeECCeEEEEEECC
Confidence 4689999999999999999999999 8999999853 799999999999999997 278999999999998886
Q ss_pred cc
Q psy9171 105 YR 106 (118)
Q Consensus 105 ~~ 106 (118)
.+
T Consensus 92 ~~ 93 (109)
T 2dnn_A 92 ER 93 (109)
T ss_dssp HH
T ss_pred cc
Confidence 53
No 178
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.61 E-value=5.4e-16 Score=126.59 Aligned_cols=76 Identities=12% Similarity=0.036 Sum_probs=68.6
Q ss_pred CCCCcEEEeCC--CCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceee---CCe--eeE
Q psy9171 27 FKPSRVIHIRN--IPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVL---KGK--NQV 99 (118)
Q Consensus 27 ~~PS~vL~V~N--LP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i---~Gr--~v~ 99 (118)
.+|+++|||+| |++++||++|.++|++||.|.++.+.++||+|||||++.++|..|+.. +|+..+ .|+ +++
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~--lnG~~~~~~~g~~~~ly 92 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVT--LNGKEVVDDLGQKITLY 92 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTTCSEEEEEESSHHHHHHHHHH--TTTCEEECTTSCEEECE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHH--hCCCccccccCCceEEE
Confidence 48999999999 578999999999999999999999988999999999999999999865 888877 244 789
Q ss_pred EEecc
Q psy9171 100 SLISG 104 (118)
Q Consensus 100 V~~S~ 104 (118)
++|+.
T Consensus 93 ~~~~~ 97 (345)
T 3tht_A 93 LNFVE 97 (345)
T ss_dssp EEECS
T ss_pred EEEee
Confidence 99984
No 179
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.61 E-value=2.5e-16 Score=110.51 Aligned_cols=76 Identities=9% Similarity=0.071 Sum_probs=69.5
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL 101 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~ 101 (118)
.++++|||+|||+++|+++|.++|++||.|.++.+..+ +|+|||+|.+.++|..|+. +|+..+.||+|.|.
T Consensus 85 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~---~~~~~~~g~~i~V~ 161 (167)
T 2cjk_A 85 DKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ---NKFIDFKDRKIEIK 161 (167)
T ss_dssp HHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH---CSEECSSSSCEEEE
T ss_pred cCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh---CCCEEeCCeEEEEe
Confidence 45779999999999999999999999999999999854 5899999999999999974 78999999999999
Q ss_pred ecccc
Q psy9171 102 ISGYR 106 (118)
Q Consensus 102 ~S~~~ 106 (118)
+|..+
T Consensus 162 ~a~pk 166 (167)
T 2cjk_A 162 RAEPR 166 (167)
T ss_dssp ECCCC
T ss_pred ecCCC
Confidence 99764
No 180
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.61 E-value=1.2e-15 Score=109.73 Aligned_cols=76 Identities=17% Similarity=0.141 Sum_probs=68.8
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCC----C-------ceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCe
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPF----G-------RVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGK 96 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~f----G-------~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr 96 (118)
.++++|||+|||+++|+++|.++|++| | .|.++.+...+|+|||+|.+.++|..|+ . +|+..+.|+
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al-~--l~g~~~~g~ 78 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-A--FDGIIFQGQ 78 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHG-G--GTTEEETTE
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHH-H--hcCCEEcCc
Confidence 467899999999999999999999999 6 7888888888999999999999999998 3 899999999
Q ss_pred eeEEEecccc
Q psy9171 97 NQVSLISGYR 106 (118)
Q Consensus 97 ~v~V~~S~~~ 106 (118)
+|.|.+++..
T Consensus 79 ~i~v~~~~~~ 88 (198)
T 2yh0_A 79 SLKIRRPHDY 88 (198)
T ss_dssp EEEEECCCCC
T ss_pred eEEEeCCCCC
Confidence 9999998754
No 181
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.61 E-value=5.6e-16 Score=108.72 Aligned_cols=75 Identities=19% Similarity=0.121 Sum_probs=67.4
Q ss_pred CCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEEe
Q psy9171 29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLI 102 (118)
Q Consensus 29 PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~ 102 (118)
|+++|||+|||+++|+++|.++|++||.|.++.++.+ +|+|||+|.+.++|..|+.. +..+.|+++.+.+
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~----~~~~~g~~i~v~~ 77 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT----QHILDGKVIDPKR 77 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS----CCEETTEECCCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc----ccccCCeEccccc
Confidence 6889999999999999999999999999999999854 58999999999999999853 5689999999998
Q ss_pred ccccc
Q psy9171 103 SGYRN 107 (118)
Q Consensus 103 S~~~~ 107 (118)
+..+.
T Consensus 78 ~~~~~ 82 (167)
T 2cjk_A 78 AIPRD 82 (167)
T ss_dssp CCCHH
T ss_pred ccchh
Confidence 86543
No 182
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.61 E-value=5.4e-16 Score=112.85 Aligned_cols=78 Identities=17% Similarity=0.064 Sum_probs=69.9
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec------cCceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK------GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL 101 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~------~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~ 101 (118)
.++++|||+|||+++|+++|.++|++||.|.++.++. .+|+|||+|.+.++|..|+.. +|+..+.|++|.|.
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~--l~~~~~~g~~l~v~ 103 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ--MNSVMLGGRNIKVG 103 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHH--HSSCCCC-CCCEEE
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHH--ccCCeeCCeeEEEe
Confidence 4578999999999999999999999999999999974 379999999999999999864 78999999999999
Q ss_pred eccccc
Q psy9171 102 ISGYRN 107 (118)
Q Consensus 102 ~S~~~~ 107 (118)
++....
T Consensus 104 ~~~~~~ 109 (216)
T 2qfj_A 104 RPSNIG 109 (216)
T ss_dssp CCSCCG
T ss_pred cCCCcc
Confidence 987654
No 183
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.61 E-value=3.7e-16 Score=113.40 Aligned_cols=75 Identities=21% Similarity=0.144 Sum_probs=69.9
Q ss_pred CcEEEeCCCCC-cccHHHHHHhccCCCceeEEEEecc-CceEEEeecchhhhhcccccccccceeeCCeeeEEEecccc
Q psy9171 30 SRVIHIRNIPN-EVTEAEIIHLGIPFGRVTNVLVLKG-KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGYR 106 (118)
Q Consensus 30 S~vL~V~NLP~-~vte~dL~~Lf~~fG~V~~v~l~~~-kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~~ 106 (118)
+++|||+|||+ ++|+++|.++|++||.|.++.++.+ +|+|||+|.+.++|..|+.. +|+..+.|+++.+.+|+.+
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~--l~~~~~~g~~l~v~~a~~~ 79 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSH--LNGHKLHGKPIRITLSKHQ 79 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHH--HTTCCCSSCCCEEEECCCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHH--hCCCeecCeEEEEEEecCC
Confidence 57999999999 9999999999999999999999876 69999999999999999854 8899999999999999865
No 184
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.60 E-value=1.1e-15 Score=106.46 Aligned_cols=74 Identities=15% Similarity=0.183 Sum_probs=67.2
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCee--eE
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKN--QV 99 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~--v~ 99 (118)
.+++.|||+|||+++|+++|.++|++||.|.++.+..+ +|+|||+|.+.++|..|+.. +|+..+.|+. |.
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~--l~g~~~~g~~~~i~ 163 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG--LNGQKPSGATEPIT 163 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH--HTTCCCTTCSSCCE
T ss_pred CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHH--hcCCccCCCccceE
Confidence 56789999999999999999999999999999999753 68999999999999999854 8899999974 88
Q ss_pred EEec
Q psy9171 100 SLIS 103 (118)
Q Consensus 100 V~~S 103 (118)
|.||
T Consensus 164 v~~A 167 (167)
T 1fxl_A 164 VKFA 167 (167)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 8886
No 185
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.60 E-value=1.2e-15 Score=126.67 Aligned_cols=77 Identities=9% Similarity=0.110 Sum_probs=71.1
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL 101 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~ 101 (118)
.|+.+|||+|||+++|+++|..+|++||.|..+.++.+ +|+|||+|.+.++|..|+.. +|+..|.|++|.|.
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~--lng~~i~gr~i~V~ 177 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKH--ADGKKIDGRRVLVD 177 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHH--cCCCEECCEEEEEE
Confidence 56789999999999999999999999999999999753 79999999999999999864 89999999999999
Q ss_pred ecccc
Q psy9171 102 ISGYR 106 (118)
Q Consensus 102 ~S~~~ 106 (118)
+++.+
T Consensus 178 ~a~~~ 182 (437)
T 3pgw_S 178 VERGR 182 (437)
T ss_pred EeCCC
Confidence 99754
No 186
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.60 E-value=3.9e-16 Score=112.34 Aligned_cols=76 Identities=12% Similarity=0.204 Sum_probs=67.2
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc-----CceEEEeecchhhhhcccccccccceeeCCeeeEEEe
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG-----KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLI 102 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~-----kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~ 102 (118)
.++++|||+|||+++||+||.++|++|| +.++.++.+ ||+|||||++.++|..|+ . +|+..+.||.|.|..
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~--~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-S--KDRANMQHRYIELFL 119 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-T--CCSCSSSSCCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-h--hCCCEECCEEEEEEE
Confidence 4577899999999999999999999999 668988753 789999999999999998 3 789999999999999
Q ss_pred ccccc
Q psy9171 103 SGYRN 107 (118)
Q Consensus 103 S~~~~ 107 (118)
|+.+.
T Consensus 120 a~~~~ 124 (139)
T 2hgn_A 120 NSTTG 124 (139)
T ss_dssp CCCSC
T ss_pred CCCCC
Confidence 87643
No 187
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.60 E-value=8.3e-16 Score=120.12 Aligned_cols=78 Identities=12% Similarity=0.094 Sum_probs=70.7
Q ss_pred CCCcEEEeCCCCCcc---------cHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceee-----
Q psy9171 28 KPSRVIHIRNIPNEV---------TEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVL----- 93 (118)
Q Consensus 28 ~PS~vL~V~NLP~~v---------te~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i----- 93 (118)
.++++|||+|||+++ ||++|..+|++||.|.++.++..||+|||+|.+.++|..|+.. +|+..+
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~kG~AFV~F~~~~~Ae~A~~a--m~g~~l~~~~~ 209 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESKNCGFVKFKYQANAEFAKEA--MSNQTLLLPSD 209 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHH--HTTCCCCCTTS
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCCCEEEEEeCCHHHHHHHHHH--hCCCEEecccc
Confidence 578999999999998 8999999999999999999999999999999999999999865 788888
Q ss_pred -------CCeeeEEEeccccc
Q psy9171 94 -------KGKNQVSLISGYRN 107 (118)
Q Consensus 94 -------~Gr~v~V~~S~~~~ 107 (118)
.|++|.|.+|+...
T Consensus 210 ~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 210 KEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp TTGGGGGGSCCCEEEECC---
T ss_pred ccccccCCCCEEEEEEccCCC
Confidence 89999999998643
No 188
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.60 E-value=3e-15 Score=114.19 Aligned_cols=80 Identities=14% Similarity=0.064 Sum_probs=72.7
Q ss_pred CCCCCcEEEeCCCCCcc-cHHHHHHhccCCCceeEEEEecc-----CceEEEeecchhhhhcccccccccceeeCCeeeE
Q psy9171 26 DFKPSRVIHIRNIPNEV-TEAEIIHLGIPFGRVTNVLVLKG-----KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQV 99 (118)
Q Consensus 26 ~~~PS~vL~V~NLP~~v-te~dL~~Lf~~fG~V~~v~l~~~-----kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~ 99 (118)
...++++|||+|||+++ |+++|.++|++||.|.++.+..+ +|+|||+|.+.++|..|+.. +|+..+.||+|.
T Consensus 180 ~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~--l~g~~~~g~~l~ 257 (284)
T 3smz_A 180 ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQ--ADGLSLGGSHLR 257 (284)
T ss_dssp TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHH--HTTCEETTEECE
T ss_pred ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHH--hCCCccCCeEEE
Confidence 33678999999999995 99999999999999999999864 79999999999999999864 899999999999
Q ss_pred EEeccccc
Q psy9171 100 SLISGYRN 107 (118)
Q Consensus 100 V~~S~~~~ 107 (118)
|.|++.+.
T Consensus 258 v~~a~~~~ 265 (284)
T 3smz_A 258 VSFCAPGP 265 (284)
T ss_dssp EEECCSSS
T ss_pred EEEecCCC
Confidence 99998764
No 189
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.59 E-value=1e-15 Score=107.63 Aligned_cols=77 Identities=12% Similarity=0.111 Sum_probs=66.2
Q ss_pred CCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec--------cCceEEEeecchhhhhcccccccccceeeC---Cee
Q psy9171 29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK--------GKNQLLLHLEAEIIHLGIPFGRVTNVLVLK---GKN 97 (118)
Q Consensus 29 PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~--------~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~---Gr~ 97 (118)
.+++|||+|||+++|+++|.++|++||.|.++.++. .+|+|||+|.+.++|..|+.. +|+..+. +++
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~--l~~~~~~~~~~~~ 79 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNA--LHNMKVLPGMHHP 79 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHH--HTTTCCCTTCSSC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHH--hcCcEEccCCccc
Confidence 578999999999999999999999999999999984 368999999999999999854 6665554 678
Q ss_pred eEEEeccccc
Q psy9171 98 QVSLISGYRN 107 (118)
Q Consensus 98 v~V~~S~~~~ 107 (118)
+.+.++..+.
T Consensus 80 ~~~~~~~~~~ 89 (175)
T 3nmr_A 80 IQMKPADSEK 89 (175)
T ss_dssp CEEEECGGGC
T ss_pred eEEccccccc
Confidence 8888876543
No 190
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.59 E-value=1.2e-15 Score=108.43 Aligned_cols=73 Identities=8% Similarity=0.107 Sum_probs=64.7
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCcee--EEEEecc-----CceEEEeecchhhhhcccccccccceeeCCeeeEE
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVT--NVLVLKG-----KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVS 100 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~--~v~l~~~-----kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V 100 (118)
.++.+|||+|||+++||+||.++|++| .|. ++.++.+ ||+|||+|++.++|..|+. .++..+.||+|.|
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~---~~~~~l~gR~I~V 115 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG---KHKERIGHRYIEV 115 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT---TTTCCBTTBCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH---HCCCEECCEEEEE
Confidence 557899999999999999999999999 566 8888743 7999999999999999985 3579999999999
Q ss_pred Eecc
Q psy9171 101 LISG 104 (118)
Q Consensus 101 ~~S~ 104 (118)
..|+
T Consensus 116 ~~a~ 119 (126)
T 2hgm_A 116 FKSS 119 (126)
T ss_dssp EEEC
T ss_pred EECC
Confidence 9984
No 191
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.59 E-value=3.2e-15 Score=114.01 Aligned_cols=76 Identities=18% Similarity=0.145 Sum_probs=70.1
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEecccc
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGYR 106 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~~ 106 (118)
.++++|||+|||+++|+++|.++|++|| |.++.+-+.+|+|||+|.+.++|..|+.. +|+..+.|+++.+.++...
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~~~~~g~afV~f~~~~~A~~A~~~--l~~~~~~g~~i~v~~~~~~ 95 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFVDKYKGTAFVTLLNGEQAEAAINA--FHQSRLRERELSVQLQPTD 95 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEEETTTTEEEEEESSHHHHHHHHHH--HTTCEETTEECEEEECCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEEecCCCEEEEEeCCHHHHHHHHHH--cCCCeeCCeEEEEEecCCC
Confidence 5788999999999999999999999999 99999977899999999999999999854 7899999999999998653
No 192
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=1.9e-15 Score=103.21 Aligned_cols=72 Identities=22% Similarity=0.187 Sum_probs=59.7
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec---------cCceEEEeecchhhhhcccccccccceeeCCeee
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK---------GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQ 98 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~---------~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v 98 (118)
.++++|||+|||+++|+++|.++|++||.|. +.++. .||+|||+|++.++|..|+.. + ..++|+.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~--~--~~~~G~~~ 80 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDA--C--LEEDGKLY 80 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHH--S--EEETTEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHh--h--hhcCCcEE
Confidence 6788999999999999999999999999999 66653 278999999999999999864 3 23677777
Q ss_pred EEEecc
Q psy9171 99 VSLISG 104 (118)
Q Consensus 99 ~V~~S~ 104 (118)
.+..+.
T Consensus 81 ~~~~~~ 86 (114)
T 2dnl_A 81 LCVSSP 86 (114)
T ss_dssp EEECCS
T ss_pred EeccCC
Confidence 666543
No 193
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=5.9e-15 Score=100.67 Aligned_cols=80 Identities=10% Similarity=0.076 Sum_probs=68.2
Q ss_pred CCCCCcEEEeCCCCC--cc---------cHHHHHHhccCCCceeEEEEec--cCceEEEeecchhhhhccccccccccee
Q psy9171 26 DFKPSRVIHIRNIPN--EV---------TEAEIIHLGIPFGRVTNVLVLK--GKNQLLLHLEAEIIHLGIPFGRVTNVLV 92 (118)
Q Consensus 26 ~~~PS~vL~V~NLP~--~v---------te~dL~~Lf~~fG~V~~v~l~~--~kgqAFVEm~~~e~A~~ai~~~~~n~~~ 92 (118)
...||++|+|+||.. ++ ++++|.++|++||.|.++.+.. .+|+|||+|.+.++|..|+.. +|+..
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~--lng~~ 88 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQT--LDGRW 88 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHH--STTCE
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHH--cCCCE
Confidence 337899999999943 32 3689999999999999997753 379999999999999999854 89999
Q ss_pred eCCeeeEEEeccccc
Q psy9171 93 LKGKNQVSLISGYRN 107 (118)
Q Consensus 93 i~Gr~v~V~~S~~~~ 107 (118)
+.||+|.+.|+..+.
T Consensus 89 ~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 89 FGGRQITAQAWDGTT 103 (112)
T ss_dssp ETTEECEEEECCSCC
T ss_pred ECCcEEEEEEeCCCC
Confidence 999999999987643
No 194
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.58 E-value=3.2e-15 Score=114.48 Aligned_cols=78 Identities=17% Similarity=0.144 Sum_probs=70.9
Q ss_pred CCCCCcEEEeCCCCCc-ccHHHHHHhccCCCceeEEEEecc-------CceEEEeecchhhhhcccccccccceeeCCee
Q psy9171 26 DFKPSRVIHIRNIPNE-VTEAEIIHLGIPFGRVTNVLVLKG-------KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKN 97 (118)
Q Consensus 26 ~~~PS~vL~V~NLP~~-vte~dL~~Lf~~fG~V~~v~l~~~-------kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~ 97 (118)
...++++|||+|||++ +|+++|.++|++||.|.++.++.+ +|+|||+|.+.++|..|+ . +|+..+.||+
T Consensus 206 ~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~--l~g~~~~g~~ 282 (292)
T 2ghp_A 206 ATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-Q--MNRSLLGNRE 282 (292)
T ss_dssp -CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-G--GTTEEETTEE
T ss_pred cCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-H--hcCCEECCcE
Confidence 3467899999999999 999999999999999999999753 688999999999999998 5 8999999999
Q ss_pred eEEEecccc
Q psy9171 98 QVSLISGYR 106 (118)
Q Consensus 98 v~V~~S~~~ 106 (118)
|.|.||+.+
T Consensus 283 i~V~~a~~k 291 (292)
T 2ghp_A 283 ISVSLADKK 291 (292)
T ss_dssp EEEEECCCC
T ss_pred EEEEEecCC
Confidence 999999764
No 195
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.57 E-value=2.7e-15 Score=111.96 Aligned_cols=73 Identities=15% Similarity=0.119 Sum_probs=65.2
Q ss_pred CcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec-----cCceEEEeecchhhhhcccccccccceeeCCeeeEEEecc
Q psy9171 30 SRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK-----GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISG 104 (118)
Q Consensus 30 S~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~-----~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~ 104 (118)
+++|||+|||+++|+++|.++|++||.|.++++.. .||+|||||++.++|..|+.. . +..+.||+|.|..++
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~--~-~~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVET--P-GQKYKETDLLILFKD 185 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHC--T-TCEETTEECEEEETT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHh--C-CCeECCEEEEEEEhH
Confidence 57899999999999999999999999999999985 379999999999999999853 3 459999999999875
Q ss_pred c
Q psy9171 105 Y 105 (118)
Q Consensus 105 ~ 105 (118)
.
T Consensus 186 ~ 186 (193)
T 2voo_A 186 D 186 (193)
T ss_dssp T
T ss_pred H
Confidence 3
No 196
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.57 E-value=2.9e-15 Score=114.71 Aligned_cols=76 Identities=9% Similarity=0.010 Sum_probs=68.1
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec----cCceEEEeecchhhhhcccccccccceeeCCeeeEEEec
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK----GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLIS 103 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~----~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S 103 (118)
.++++|||+|||+++|+++|.++|++||.|.++.+++ .+|+|||+|.+.++|..|+. +|+..+.|+++.+.++
T Consensus 39 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~---~~~~~~~g~~i~v~~~ 115 (292)
T 2ghp_A 39 RELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT---KTHKVVGQNEIIVSHL 115 (292)
T ss_dssp ---CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT---TTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH---hCCcEeCCcEEEEEEC
Confidence 6689999999999999999999999999999999987 47999999999999999983 7899999999999988
Q ss_pred ccc
Q psy9171 104 GYR 106 (118)
Q Consensus 104 ~~~ 106 (118)
...
T Consensus 116 ~~~ 118 (292)
T 2ghp_A 116 TEC 118 (292)
T ss_dssp CSC
T ss_pred CCC
Confidence 654
No 197
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.56 E-value=3.9e-15 Score=101.96 Aligned_cols=76 Identities=12% Similarity=0.165 Sum_probs=67.1
Q ss_pred CCCCcEEEeCCC--CCccc--------HHHHHHhccCCCceeEEEEecc--------CceEEEeecchhhhhcccccccc
Q psy9171 27 FKPSRVIHIRNI--PNEVT--------EAEIIHLGIPFGRVTNVLVLKG--------KNQLLLHLEAEIIHLGIPFGRVT 88 (118)
Q Consensus 27 ~~PS~vL~V~NL--P~~vt--------e~dL~~Lf~~fG~V~~v~l~~~--------kgqAFVEm~~~e~A~~ai~~~~~ 88 (118)
..||++|.++|+ |.++. ++||.+.|++||.|.++.+.++ +|+|||+|++.++|..|+.. +
T Consensus 2 g~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~--l 79 (105)
T 3v4m_A 2 GHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQG--L 79 (105)
T ss_dssp CSCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHH--H
T ss_pred CCCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHH--h
Confidence 479999999998 54553 4789999999999999999742 69999999999999999865 9
Q ss_pred cceeeCCeeeEEEecc
Q psy9171 89 NVLVLKGKNQVSLISG 104 (118)
Q Consensus 89 n~~~i~Gr~v~V~~S~ 104 (118)
|+..+.||+|.+.|+.
T Consensus 80 nG~~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 80 TGRKFANRVVVTKYCD 95 (105)
T ss_dssp TTCEETTEECEEEEEC
T ss_pred CCCEeCCCEEEEEEeC
Confidence 9999999999999984
No 198
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.54 E-value=1.1e-14 Score=106.05 Aligned_cols=86 Identities=6% Similarity=0.028 Sum_probs=71.7
Q ss_pred cEEEeCCC----CCcccHHHHHHhccCCCceeEEEEecc------CceEEEeecc----h-hh---hhccccccccccee
Q psy9171 31 RVIHIRNI----PNEVTEAEIIHLGIPFGRVTNVLVLKG------KNQLLLHLEA----E-II---HLGIPFGRVTNVLV 92 (118)
Q Consensus 31 ~vL~V~NL----P~~vte~dL~~Lf~~fG~V~~v~l~~~------kgqAFVEm~~----~-e~---A~~ai~~~~~n~~~ 92 (118)
..|||+|| |+.++|.+|.++|++||.|.++.++.+ +|+|||+|.| + ++ |..|+..+.+|+..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 46999999 999999999999999999999999854 8999999996 3 33 77777644689999
Q ss_pred eCCeeeEEEeccccchHHHHHhhh
Q psy9171 93 LKGKNQVSLISGYRNRQSAALMMI 116 (118)
Q Consensus 93 i~Gr~v~V~~S~~~~~~~~~~~~~ 116 (118)
|.||+++|++-+.--++-+++..|
T Consensus 83 I~Gr~irV~ln~~g~~~~~~~~~i 106 (136)
T 2j8a_A 83 IMGFKFEVILNKHSILNNIISKFV 106 (136)
T ss_dssp ETTEEEEEEECCTTHHHHHHHHHH
T ss_pred ecCcEEEEEECcccHHHHHHHHHH
Confidence 999999999998877766655443
No 199
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.51 E-value=2.3e-14 Score=101.59 Aligned_cols=76 Identities=12% Similarity=-0.088 Sum_probs=66.3
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeE-----EEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEe
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTN-----VLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLI 102 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~-----v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~ 102 (118)
.++++|||+|||+++|+++|.++|++||.+.. ...-..||+|||+|.+.++|..|+ . +|+..+.|+++.|.+
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~--l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-E--LTGLKVFGNEIKLEK 87 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-H--GGGEEETTEEEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-h--cCCCEeCCeEEEEec
Confidence 67899999999999999999999999987655 222235899999999999999998 3 899999999999999
Q ss_pred cccc
Q psy9171 103 SGYR 106 (118)
Q Consensus 103 S~~~ 106 (118)
+..+
T Consensus 88 ~~~~ 91 (175)
T 1fje_B 88 PKGR 91 (175)
T ss_dssp CCCS
T ss_pred CCCc
Confidence 9864
No 200
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.48 E-value=4.8e-14 Score=98.91 Aligned_cols=76 Identities=17% Similarity=0.202 Sum_probs=66.5
Q ss_pred CCCcEEEeCCCCC--c---ccHHHHHHhccCCCceeEEEEecc----------CceEEEeecchhhhhccccccccccee
Q psy9171 28 KPSRVIHIRNIPN--E---VTEAEIIHLGIPFGRVTNVLVLKG----------KNQLLLHLEAEIIHLGIPFGRVTNVLV 92 (118)
Q Consensus 28 ~PS~vL~V~NLP~--~---vte~dL~~Lf~~fG~V~~v~l~~~----------kgqAFVEm~~~e~A~~ai~~~~~n~~~ 92 (118)
+||+||.++|+-. + -.++||.+.|++||.|.++.+..+ +|+|||+|++.++|..|+.. +|+.+
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~--LnGr~ 95 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQA--LNGRW 95 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHH--HTTCE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHH--HCCCE
Confidence 5899999999942 2 347999999999999999999753 37899999999999999865 99999
Q ss_pred eCCeeeEEEeccc
Q psy9171 93 LKGKNQVSLISGY 105 (118)
Q Consensus 93 i~Gr~v~V~~S~~ 105 (118)
+.||+|.+.|+.-
T Consensus 96 f~GR~i~v~~~~~ 108 (118)
T 3ue2_A 96 FAGRKVVAEVYDQ 108 (118)
T ss_dssp ETTEECEEEEECH
T ss_pred ECCcEEEEEEcCh
Confidence 9999999999853
No 201
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.44 E-value=1.3e-13 Score=105.38 Aligned_cols=77 Identities=10% Similarity=0.034 Sum_probs=67.8
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc-----CceEEEeecchhhhhcccccccc-cceeeC---Ceee
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG-----KNQLLLHLEAEIIHLGIPFGRVT-NVLVLK---GKNQ 98 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~-----kgqAFVEm~~~e~A~~ai~~~~~-n~~~i~---Gr~v 98 (118)
.|+.+|||+|||+++|+++|.++|++||.|.++.++.+ +|+|||+|.+.++|..|+.. + ++..+. ||++
T Consensus 94 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~--l~~~~~~~~~~~r~i 171 (261)
T 3sde_A 94 THGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALER--CGDGAFLLTTTPRPV 171 (261)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHH--HHHSCEESSSSCCBC
T ss_pred ccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHH--hcCCeEEecCCCceE
Confidence 46789999999999999999999999999999999864 79999999999999999864 5 455555 9999
Q ss_pred EEEecccc
Q psy9171 99 VSLISGYR 106 (118)
Q Consensus 99 ~V~~S~~~ 106 (118)
.|.++...
T Consensus 172 ~v~~~~~~ 179 (261)
T 3sde_A 172 IVEPMEQF 179 (261)
T ss_dssp EEEECCCE
T ss_pred EEeecccc
Confidence 99998754
No 202
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=9.1e-13 Score=90.07 Aligned_cols=74 Identities=7% Similarity=-0.040 Sum_probs=61.7
Q ss_pred CcEEEeCCCC-------CcccHHHHHHhccCCCceeEEEEec-cCceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171 30 SRVIHIRNIP-------NEVTEAEIIHLGIPFGRVTNVLVLK-GKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL 101 (118)
Q Consensus 30 S~vL~V~NLP-------~~vte~dL~~Lf~~fG~V~~v~l~~-~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~ 101 (118)
.+.|-|+-.+ +++||++|.++|++||.|.++.++. .||+|||||++.++|..|+.. .++ +.|++|.|.
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~--~~~--~~g~~l~V~ 85 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQN--EVG--LVDNPLKIS 85 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHT--CCB--CSSSBCEEE
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHh--cCC--CCCCeEEEE
Confidence 4566666554 4689999999999999999999984 589999999999999999864 334 679999999
Q ss_pred eccccc
Q psy9171 102 ISGYRN 107 (118)
Q Consensus 102 ~S~~~~ 107 (118)
+++.+.
T Consensus 86 ~a~~~~ 91 (100)
T 2d9o_A 86 WLEGQP 91 (100)
T ss_dssp CSSCCC
T ss_pred EccCCC
Confidence 997653
No 203
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.39 E-value=6.5e-13 Score=92.72 Aligned_cols=77 Identities=12% Similarity=0.085 Sum_probs=66.8
Q ss_pred CCCCcEEEeCCCCC--c--------ccHHHHHHhccCCCceeEEEEecc--CceEEEeecchhhhhcccccccccceeeC
Q psy9171 27 FKPSRVIHIRNIPN--E--------VTEAEIIHLGIPFGRVTNVLVLKG--KNQLLLHLEAEIIHLGIPFGRVTNVLVLK 94 (118)
Q Consensus 27 ~~PS~vL~V~NLP~--~--------vte~dL~~Lf~~fG~V~~v~l~~~--kgqAFVEm~~~e~A~~ai~~~~~n~~~i~ 94 (118)
..||++|.++|+=. + -.++||.+.|++||.|.++.+.++ +|+|||+|++.++|..|+.. +|+.++.
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~--lnG~~f~ 81 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNA--LHGRWFA 81 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHH--HTTCEET
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHH--hCCCEEC
Confidence 36899999999854 2 235688999999999999999764 79999999999999999865 9999999
Q ss_pred CeeeEEEeccc
Q psy9171 95 GKNQVSLISGY 105 (118)
Q Consensus 95 Gr~v~V~~S~~ 105 (118)
||+|.+.|+.-
T Consensus 82 GR~i~v~~~~~ 92 (114)
T 3s6e_A 82 GKMITAAYVPL 92 (114)
T ss_dssp TEECEEEEECH
T ss_pred CEEEEEEEEcH
Confidence 99999999854
No 204
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.35 E-value=1.3e-13 Score=94.05 Aligned_cols=67 Identities=13% Similarity=0.122 Sum_probs=58.7
Q ss_pred eCCCCCcccHHHHHHhc------------cCCCceeEEEEecc-----CceEEEeecchhhhhcccccccccceeeCCee
Q psy9171 35 IRNIPNEVTEAEIIHLG------------IPFGRVTNVLVLKG-----KNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKN 97 (118)
Q Consensus 35 V~NLP~~vte~dL~~Lf------------~~fG~V~~v~l~~~-----kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~ 97 (118)
+.+||+++++++|.+.| ++||.|.++.+.++ ||+|||+|++.++|..|+.. +|+..+.||+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~--lng~~~~Gr~ 97 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVID--LNNRWFNGQP 97 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHH--HTTCEETTEE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHH--HCCCEECCEE
Confidence 45677888888887666 99999999999864 79999999999999999864 8999999999
Q ss_pred eEEEec
Q psy9171 98 QVSLIS 103 (118)
Q Consensus 98 v~V~~S 103 (118)
|.+.||
T Consensus 98 i~v~~s 103 (104)
T 1jmt_A 98 IHAELS 103 (104)
T ss_dssp CCEEEC
T ss_pred EEEEEc
Confidence 999997
No 205
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=2.6e-12 Score=91.44 Aligned_cols=79 Identities=11% Similarity=0.073 Sum_probs=70.4
Q ss_pred CCCCcEEEeCCCCCc-ccHHHHHHhccCCCceeEEEEeccCceEEEeecc-hhhhhcccccccccceeeCCeeeEEEecc
Q psy9171 27 FKPSRVIHIRNIPNE-VTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEA-EIIHLGIPFGRVTNVLVLKGKNQVSLISG 104 (118)
Q Consensus 27 ~~PS~vL~V~NLP~~-vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~-~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~ 104 (118)
-+|+-+|||+|||++ +++++|.++|++||.|..|.+..+...|||+|.+ +++|..|+.....+++.|+|..+.+....
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL~ 94 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVLE 94 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEECC
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEECC
Confidence 377889999999999 9999999999999999999999998899999999 78999888764446999999999887764
Q ss_pred c
Q psy9171 105 Y 105 (118)
Q Consensus 105 ~ 105 (118)
-
T Consensus 95 G 95 (121)
T 1owx_A 95 G 95 (121)
T ss_dssp H
T ss_pred C
Confidence 3
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.20 E-value=5.8e-11 Score=81.16 Aligned_cols=75 Identities=11% Similarity=0.079 Sum_probs=64.0
Q ss_pred CCCCCcEEEeCCCCC----cccH----HHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCee
Q psy9171 26 DFKPSRVIHIRNIPN----EVTE----AEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKN 97 (118)
Q Consensus 26 ~~~PS~vL~V~NLP~----~vte----~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~ 97 (118)
..||.-+|.|.-.|. ..-+ .+|.+.|++||.|..++++.++ +||+|++.++|.+|+. +|+..+.||+
T Consensus 3 ~GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--~fVtF~d~~sAlaAi~---mnG~~v~Gr~ 77 (91)
T 2dnr_A 3 SGSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--MWVTFLEGSSALNVLS---LNGKELLNRT 77 (91)
T ss_dssp CCCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--EEEEESSHHHHHHGGG---GTTCEETTEE
T ss_pred CCCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--EEEEECChHHHHHHHh---cCCeEeCCeE
Confidence 358888888888772 2334 6678999999999999999866 9999999999999983 9999999999
Q ss_pred eEEEeccc
Q psy9171 98 QVSLISGY 105 (118)
Q Consensus 98 v~V~~S~~ 105 (118)
+.|+.++-
T Consensus 78 LkV~lkt~ 85 (91)
T 2dnr_A 78 ITIALKSP 85 (91)
T ss_dssp EEEEECCC
T ss_pred EEEEeCCC
Confidence 99999864
No 207
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.96 E-value=9.3e-10 Score=81.89 Aligned_cols=76 Identities=17% Similarity=0.169 Sum_probs=64.9
Q ss_pred CCCCcEEEeCCCCC-----cccHHHHHHhccCCCceeEEEEe----------ccCceEEEeecchhhhhcccccccccce
Q psy9171 27 FKPSRVIHIRNIPN-----EVTEAEIIHLGIPFGRVTNVLVL----------KGKNQLLLHLEAEIIHLGIPFGRVTNVL 91 (118)
Q Consensus 27 ~~PS~vL~V~NLP~-----~vte~dL~~Lf~~fG~V~~v~l~----------~~kgqAFVEm~~~e~A~~ai~~~~~n~~ 91 (118)
..+++++.+.|+-. +-.+++|.+.|++||.|.++.+. +.+|++||+|.+.++|.+|+.. +|+.
T Consensus 121 ~~~s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~--l~gr 198 (222)
T 3dxb_A 121 AMESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQA--LNGR 198 (222)
T ss_dssp CCBCSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHH--HTTC
T ss_pred ccccccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHH--hcCc
Confidence 35677888877753 34578899999999999999997 3468999999999999999965 9999
Q ss_pred eeCCeeeEEEecc
Q psy9171 92 VLKGKNQVSLISG 104 (118)
Q Consensus 92 ~i~Gr~v~V~~S~ 104 (118)
++.||+|.+.|+.
T Consensus 199 ~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 199 WFAGRKVVAEVYD 211 (222)
T ss_dssp BSSSSBCEEEECC
T ss_pred eECCeEEEEEEcC
Confidence 9999999999984
No 208
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.95 E-value=8.4e-10 Score=75.95 Aligned_cols=74 Identities=11% Similarity=0.077 Sum_probs=63.3
Q ss_pred CCCCCCcEEEeCCCCCc-----ccH----HHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCC
Q psy9171 25 SDFKPSRVIHIRNIPNE-----VTE----AEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKG 95 (118)
Q Consensus 25 ~~~~PS~vL~V~NLP~~-----vte----~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~G 95 (118)
...||.-+|.|.-+++. .-+ .+|.+.|.+||.|..+++..++ +||+|.+.++|.+|+. +|+..+.|
T Consensus 10 ~~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--~fVtF~d~~sAl~AI~---ldG~~v~G 84 (95)
T 1ufw_A 10 FQGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--MLVTFADSHSALSVLD---VDGMKVKG 84 (95)
T ss_dssp CCCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--EEEECSCSHHHHHHHH---GGGSEETT
T ss_pred ecCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--EEEEEcChHHHHHHHh---cCCeeeCC
Confidence 44589999999988743 222 5678899999999999999876 9999999999999983 99999999
Q ss_pred eeeEEEec
Q psy9171 96 KNQVSLIS 103 (118)
Q Consensus 96 r~v~V~~S 103 (118)
|++.|++-
T Consensus 85 r~L~V~~k 92 (95)
T 1ufw_A 85 RAVKISGP 92 (95)
T ss_dssp EEEEEECC
T ss_pred eEEEEecc
Confidence 99999864
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.56 E-value=1.3e-07 Score=67.14 Aligned_cols=71 Identities=13% Similarity=0.115 Sum_probs=65.8
Q ss_pred CCcEEEeCCCCCcccHHHHHHhccCC-----CceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEE
Q psy9171 29 PSRVIHIRNIPNEVTEAEIIHLGIPF-----GRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSL 101 (118)
Q Consensus 29 PS~vL~V~NLP~~vte~dL~~Lf~~f-----G~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~ 101 (118)
..++|=+=|||+.+++..+++|.+|| |.+.++.+.++.+-|+|||+|...|-.|.- .+||.++.||.+.+.
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~GAivef~d~~~AgKasL--aL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNGAIIIFRDSKFAAKMLM--ILNGSQFQGKVIRSG 95 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTEEEEECSCHHHHHHHHH--HHSSEEETTEEEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCceEEEEccchhhHHHHh--hcCCeeecCeEEEec
Confidence 37899999999999999999999999 999999999999999999999999999853 489999999999874
No 210
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.41 E-value=0.0002 Score=49.72 Aligned_cols=73 Identities=11% Similarity=0.039 Sum_probs=62.3
Q ss_pred EEEeCCCCCcc-cH----HHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEecccc
Q psy9171 32 VIHIRNIPNEV-TE----AEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGYR 106 (118)
Q Consensus 32 vL~V~NLP~~v-te----~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~~~ 106 (118)
+|.|.|||.++ +. ..+.+||..|++...+-.++.=.-..|-|.+.++|.+|= ..+++..+.|+.+++.|++..
T Consensus 7 tLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFRRirv~F~~~~~A~~AR--~~Lh~~~f~g~~~r~YFgq~~ 84 (104)
T 1wey_A 7 GLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPLSAADAR--LRLHKTEFLGKEMKLYFAQTL 84 (104)
T ss_dssp EEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTTEEEEECSSTTHHHHHH--HTSTTSEETTEECEEECCCCS
T ss_pred eEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcceEEEEEeCChHHHHHHH--HHhccceecCceeEEEecCCC
Confidence 59999999876 43 456889999999999999987667899999999999993 358899999999999999754
No 211
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=97.23 E-value=0.0001 Score=62.25 Aligned_cols=54 Identities=15% Similarity=0.238 Sum_probs=42.2
Q ss_pred cEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccC-ceEEEeecchhhhhccccc
Q psy9171 31 RVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGK-NQLLLHLEAEIIHLGIPFG 85 (118)
Q Consensus 31 ~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~k-gqAFVEm~~~e~A~~ai~~ 85 (118)
|.|+|. .|.++++.+|.+.|++||+|.++.+-+++ .+|.|||++.+++..++..
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHSS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHhc
Confidence 578897 89999999999999999999999999865 6899999999999877543
No 212
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.17 E-value=0.0016 Score=45.19 Aligned_cols=68 Identities=13% Similarity=0.020 Sum_probs=53.8
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccC-C----CceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEE
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIP-F----GRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVS 100 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~-f----G~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V 100 (118)
.-.++|.|+|||+++.++.|.-.|+. - |.|.++.... +.|+|+|.+.+.|.+.+.. ..-.++|.++.|
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--~~AvItF~d~~va~rVL~k---~~H~L~~~~LsV 78 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--CGGVLTFREPADAERVLAQ---ADHELHGAQLSL 78 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--TEEEEEESSHHHHHHHHTC---SCCBSSSSBCEE
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--CcEEEEEcChHHHHHHhcC---CcceecCeEEEE
Confidence 45678999999999998877777877 2 7889998877 8999999999999998753 144555655554
No 213
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.87 E-value=0.00085 Score=46.41 Aligned_cols=52 Identities=15% Similarity=0.247 Sum_probs=42.6
Q ss_pred CcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccc
Q psy9171 30 SRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPF 84 (118)
Q Consensus 30 S~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~ 84 (118)
..|+|+ +.|++..-.||.+||++||.|. +.-+ +-..|||.|.+.+.|..|+.
T Consensus 6 ~HV~~l-~FP~ewKt~Di~~lFs~fggv~-I~Wi-dDTsAlvvf~~~~~a~~al~ 57 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWI-DDTSAFVSLSQPEQVKIAVN 57 (101)
T ss_dssp EEEEEE-ECCTTCCHHHHHHHTTTSEEEE-EEEE-ETTEEEEEEEEECHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHHhccCCEE-EEEE-cCCeEEEEecCHHHHHHHHH
Confidence 458999 9999999999999999999432 2223 44789999999999988765
No 214
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.46 E-value=0.0025 Score=43.97 Aligned_cols=52 Identities=15% Similarity=0.250 Sum_probs=43.3
Q ss_pred CcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccc
Q psy9171 30 SRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPF 84 (118)
Q Consensus 30 S~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~ 84 (118)
..|+|+ +.|++..-.||.+||++||.|. +.=+ +-..|||.|.+.+.|..|+.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~Wi-dDTsAlvvf~~~~~a~~al~ 67 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWI-DDTSAFVSLSQPEQVQIAVN 67 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEE-ETTEEEEECSCHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCEE-EEEE-cCCeEEEEecCHHHHHHHHH
Confidence 568999 9999999999999999999643 2223 34789999999999988765
No 215
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.08 E-value=0.01 Score=39.83 Aligned_cols=52 Identities=10% Similarity=0.140 Sum_probs=43.6
Q ss_pred EEEeCCCCCcccHHHHHHhccCCCceeEEEEeccC--------ceEEEeecchhhhhccc
Q psy9171 32 VIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGK--------NQLLLHLEAEIIHLGIP 83 (118)
Q Consensus 32 vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~k--------gqAFVEm~~~e~A~~ai 83 (118)
.|.||+||+..||+++.+..++.+.+.-....+++ .-|.|.|.+.++.....
T Consensus 3 KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~ 62 (91)
T 1uw4_A 3 KVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFR 62 (91)
T ss_dssp EEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHH
Confidence 47899999999999999999999988777776542 45999999988877664
No 216
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=93.91 E-value=0.16 Score=35.68 Aligned_cols=63 Identities=6% Similarity=0.095 Sum_probs=52.2
Q ss_pred CcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhcccccccccceeeCCe
Q psy9171 30 SRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGK 96 (118)
Q Consensus 30 S~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr 96 (118)
..-|.|-..|++. -..++..|+.||.|++.....+.|---|.|++..+|.+|+. .|+..+.|.
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~~NWihI~Y~s~~~A~rAL~---kNG~ii~g~ 86 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNTGNWMHIRYQSKLQARKALS---KDGRIFGES 86 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSSSSEEEEEESSHHHHHHHHT---TTTCEETTT
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCCCCeEEEEeCCHHHHHHHHH---hCCeEecCC
Confidence 4457788888874 66788999999999999986678999999999999999974 678777653
No 217
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=93.86 E-value=0.019 Score=39.59 Aligned_cols=38 Identities=8% Similarity=-0.215 Sum_probs=33.7
Q ss_pred CceEEEeecchhhhhcccccccc-cceeeCCeeeEEEecccc
Q psy9171 66 KNQLLLHLEAEIIHLGIPFGRVT-NVLVLKGKNQVSLISGYR 106 (118)
Q Consensus 66 kgqAFVEm~~~e~A~~ai~~~~~-n~~~i~Gr~v~V~~S~~~ 106 (118)
+|++++||.+.++|..|+.. + |+..+.| ++.+.+++.+
T Consensus 13 ~G~~~ve~~~~~~A~~a~~~--~~ng~~~~G-~~~~~~a~~~ 51 (150)
T 2i2y_A 13 KGETTTEAVDAATAEKVFKQ--YANDNGVDG-EWTYDDATKT 51 (150)
T ss_dssp CEEEEEECSSHHHHTTTHHH--HHHHHTCCC-EEEEETTTTE
T ss_pred cccceeeecCHHHHHHHHHH--HhcCCCCCC-ceecccccCc
Confidence 79999999999999999854 5 8999999 9999998753
No 218
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=93.20 E-value=0.092 Score=35.72 Aligned_cols=56 Identities=13% Similarity=0.122 Sum_probs=41.5
Q ss_pred CCCcEEEeCCCCCcccHHHHHHhccCCCceeEEEEecc--------CceEEEeecchhhhhccc
Q psy9171 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKG--------KNQLLLHLEAEIIHLGIP 83 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~--------kgqAFVEm~~~e~A~~ai 83 (118)
..|-.|-||.||+..||+++.+.+++.-.+......++ -.-|.|.|.+.++.....
T Consensus 7 ~~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~ 70 (97)
T 2l08_A 7 HHSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFR 70 (97)
T ss_dssp CCCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHH
T ss_pred ccceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHH
Confidence 34667999999999999999998888766544333333 234899999988876653
No 219
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=88.89 E-value=0.42 Score=40.25 Aligned_cols=53 Identities=15% Similarity=0.238 Sum_probs=43.1
Q ss_pred CcEEEeCCCCCcccHHHHHHhccCCCceeEEEEeccCceEEEeecchhhhhccccc
Q psy9171 30 SRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFG 85 (118)
Q Consensus 30 S~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~~e~A~~ai~~ 85 (118)
+.|+|++ .|..++..+|.++|++||.| .+.-+ +..-|||.+.+.+.|..++..
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~wi-ddt~a~V~~~~~~~a~~~l~~ 492 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWI-DDTSAFVSLSQPEQVQIAVNT 492 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEEC-SSSEEEEECSCHHHHHHHHHH
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEE-cCCeEEEEECCHHHHHHHHHH
Confidence 4589998 89999999999999999964 44433 456799999999999887654
No 220
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=82.79 E-value=0.34 Score=33.18 Aligned_cols=19 Identities=5% Similarity=-0.202 Sum_probs=17.5
Q ss_pred CceEEEeecchhhhhcccc
Q psy9171 66 KNQLLLHLEAEIIHLGIPF 84 (118)
Q Consensus 66 kgqAFVEm~~~e~A~~ai~ 84 (118)
+|+|||||.+.++|..|+.
T Consensus 13 ~G~~fV~f~~~~~A~~al~ 31 (158)
T 2kn4_A 13 KGETTTEAVDAATAEKVFK 31 (158)
T ss_dssp EEEEEEECSSHHHHHHHHH
T ss_pred cchhHHHHHHHHhHHHHHH
Confidence 7999999999999999974
No 221
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=79.89 E-value=0.36 Score=31.82 Aligned_cols=19 Identities=26% Similarity=0.193 Sum_probs=0.0
Q ss_pred CCCcEEEeCCCCCcccHHH
Q psy9171 28 KPSRVIHIRNIPNEVTEAE 46 (118)
Q Consensus 28 ~PS~vL~V~NLP~~vte~d 46 (118)
.+...|||+|||+++|++-
T Consensus 95 ~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 95 KEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp -------------------
T ss_pred CCCCceEeCCCCCCccccc
Confidence 3445799999999999864
No 222
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=76.88 E-value=0.99 Score=32.21 Aligned_cols=60 Identities=18% Similarity=0.261 Sum_probs=43.7
Q ss_pred EEeCCCCCcccHHHHHHhccCCCceeEEE-Ee-------------------ccCceEEEeecchhhhhccccccccccee
Q psy9171 33 IHIRNIPNEVTEAEIIHLGIPFGRVTNVL-VL-------------------KGKNQLLLHLEAEIIHLGIPFGRVTNVLV 92 (118)
Q Consensus 33 L~V~NLP~~vte~dL~~Lf~~fG~V~~v~-l~-------------------~~kgqAFVEm~~~e~A~~ai~~~~~n~~~ 92 (118)
+.|=+-|+ -....++..|+.||.|.+-. .. .+.+---|.|++..+|.+|+. .||..
T Consensus 10 VtVFGFp~-~~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~---~NG~i 85 (132)
T 3p3d_A 10 ILVFGYPE-TMANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL---ENGAV 85 (132)
T ss_dssp EEEECCCG-GGHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT---TTTCE
T ss_pred EEEEecCH-HHHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH---hCCeE
Confidence 44445555 35677889999999997622 11 134556899999999999964 78888
Q ss_pred eCCe
Q psy9171 93 LKGK 96 (118)
Q Consensus 93 i~Gr 96 (118)
+.|-
T Consensus 86 i~G~ 89 (132)
T 3p3d_A 86 FNGV 89 (132)
T ss_dssp ETTE
T ss_pred eCcE
Confidence 9886
No 223
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=46.58 E-value=6.2 Score=30.24 Aligned_cols=35 Identities=17% Similarity=0.170 Sum_probs=28.3
Q ss_pred CcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec
Q psy9171 30 SRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK 64 (118)
Q Consensus 30 S~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~ 64 (118)
.+..-|+|||+.++..-|..++..-+.+..+.++-
T Consensus 114 ~~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m~ 148 (279)
T 3uzu_A 114 PSLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFML 148 (279)
T ss_dssp CCEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEEE
T ss_pred CceEEEEccCccccHHHHHHHHhccCCccEEEEEe
Confidence 45788999999999999999998766666666653
No 224
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=40.27 E-value=11 Score=26.58 Aligned_cols=29 Identities=17% Similarity=-0.083 Sum_probs=20.2
Q ss_pred HHHHHhccCCCceeEEEEeccCceEEEeecc
Q psy9171 45 AEIIHLGIPFGRVTNVLVLKGKNQLLLHLEA 75 (118)
Q Consensus 45 ~dL~~Lf~~fG~V~~v~l~~~kgqAFVEm~~ 75 (118)
+|+..|+...|+|.-+. ..||++||+.++
T Consensus 2 ~~~~~l~~~~G~Vkwfn--~~kGfGFI~~~~ 30 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFN--VRMGFGFLSMTA 30 (148)
T ss_dssp ----CCEEEEEEEEEEE--TTTTEEEEEEEE
T ss_pred CcccccccceeEEEEEE--CCCCeeEEeeCc
Confidence 56677888888877655 468999999984
No 225
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=31.47 E-value=17 Score=27.67 Aligned_cols=34 Identities=18% Similarity=0.343 Sum_probs=27.7
Q ss_pred CcEEEeCCCCCcccHHHHHHhccCCCceeEEEEec
Q psy9171 30 SRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK 64 (118)
Q Consensus 30 S~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~ 64 (118)
....-|+|||+.++..-|..++.. +.+....++-
T Consensus 110 ~~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm~ 143 (271)
T 3fut_A 110 QGSLLVANLPYHIATPLVTRLLKT-GRFARLVFLV 143 (271)
T ss_dssp TTEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEEE
T ss_pred CccEEEecCcccccHHHHHHHhcC-CCCCEEEEEe
Confidence 456889999999999999999887 7777666653
No 226
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=30.39 E-value=14 Score=27.78 Aligned_cols=34 Identities=12% Similarity=0.237 Sum_probs=27.8
Q ss_pred cEEEeCCCCCcccHHHHHHhccCCCceeEEEEec
Q psy9171 31 RVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK 64 (118)
Q Consensus 31 ~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~ 64 (118)
+.--|+|||+.++..-|..+++..+.+....++-
T Consensus 97 ~~~vv~NlPY~is~~il~~ll~~~~~~~~~~lm~ 130 (255)
T 3tqs_A 97 PLRVVGNLPYNISTPLLFHLFSQIHCIEDMHFML 130 (255)
T ss_dssp CEEEEEECCHHHHHHHHHHHHHTGGGEEEEEEEE
T ss_pred CeEEEecCCcccCHHHHHHHHhCCCChheEEEEE
Confidence 4568999999999999999998877777666653
No 227
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=29.50 E-value=32 Score=27.49 Aligned_cols=33 Identities=24% Similarity=0.401 Sum_probs=25.1
Q ss_pred cEEEeCCCCCcccHHHHHHhccC---------CCceeEEEEe
Q psy9171 31 RVIHIRNIPNEVTEAEIIHLGIP---------FGRVTNVLVL 63 (118)
Q Consensus 31 ~vL~V~NLP~~vte~dL~~Lf~~---------fG~V~~v~l~ 63 (118)
+...|+|||+.++..-|..++.. ||.+.-+.|+
T Consensus 143 ~~~vvaNLPYnIstpil~~ll~~~~~~~~l~~~~~~~m~lmv 184 (353)
T 1i4w_A 143 KFLTVANVTGEGSEGLIMQWLSCIGNKNWLYRFGKVKMLLWM 184 (353)
T ss_dssp EEEEEEECCSTTHHHHHHHHHHHHHHTCGGGGGSEEEEEEEE
T ss_pred ceEEEEECCCchHHHHHHHHHHhccccccccccCcceEEEEe
Confidence 57899999999999988877653 6765555554
No 228
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=27.60 E-value=57 Score=24.26 Aligned_cols=33 Identities=12% Similarity=0.218 Sum_probs=24.9
Q ss_pred cEEEeCCCCCcccHHHHHHhccCCCceeEEEEe
Q psy9171 31 RVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVL 63 (118)
Q Consensus 31 ~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~ 63 (118)
..+-|+|+|+.++...+.+++.....+..+.++
T Consensus 91 ~~~vvsNlPY~i~~~il~~ll~~~~~~~~~~~m 123 (252)
T 1qyr_A 91 PLRVFGNLPYNISTPLMFHLFSYTDAIADMHFM 123 (252)
T ss_dssp CEEEEEECCTTTHHHHHHHHHTTGGGEEEEEEE
T ss_pred ceEEEECCCCCccHHHHHHHHhcCCCcceEEEE
Confidence 478899999999999888887755455544444
No 229
>1otj_A Alpha-ketoglutarate-dependent taurine dioxygenase; jelly roll motif, alpha ketoglutarate-dependent dioxygenase, oxidoreductase; 1.90A {Escherichia coli} SCOP: b.82.2.5 PDB: 1gqw_A* 1os7_A* 1gy9_A
Probab=24.70 E-value=50 Score=24.47 Aligned_cols=26 Identities=23% Similarity=0.446 Sum_probs=22.2
Q ss_pred cEEEeCCCCCcccHHHHHHhccCCCcee
Q psy9171 31 RVIHIRNIPNEVTEAEIIHLGIPFGRVT 58 (118)
Q Consensus 31 ~vL~V~NLP~~vte~dL~~Lf~~fG~V~ 58 (118)
.+|++|+.| ++.+++.++...||.+.
T Consensus 43 Gvv~frg~~--~~~~~~~~~~~~~G~~~ 68 (283)
T 1otj_A 43 QVVFLRDQA--ITPQQQRALAQRFGELH 68 (283)
T ss_dssp SEEEECSCC--CCHHHHHHHHHTTSCBC
T ss_pred CEEEECCCC--CCHHHHHHHHHHhCCCC
Confidence 589999998 58899999999999863
No 230
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=23.85 E-value=23 Score=21.39 Aligned_cols=59 Identities=10% Similarity=0.043 Sum_probs=34.8
Q ss_pred cccHHHHHHhccCCCce-----eEEEEeccCceEEEeecchhhhhcccccccccceeeCCeeeEEEecc
Q psy9171 41 EVTEAEIIHLGIPFGRV-----TNVLVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISG 104 (118)
Q Consensus 41 ~vte~dL~~Lf~~fG~V-----~~v~l~~~kgqAFVEm~~~e~A~~ai~~~~~n~~~i~Gr~v~V~~S~ 104 (118)
.+...+|...++.-|.+ -++.+. -+++|||.......... . .++...++|+++.+..++
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~--d~~s~v~v~~~~~~~~~-~--~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIM--DNASYVEILNGKGPHVL-K--VMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEEC--SSCEEEEECTTCHHHHH-H--HHTTCCC---CCCEEECC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEe--CCcEEEEECHHHHHHHH-H--HhccccCcCceEEEEECC
Confidence 56777777766555444 344543 36899999877554433 3 366888999999887664
No 231
>1nx8_A CARC, carbapenem synthase; jelly roll, unknown function; HET: AKG N7P; 2.30A {Pectobacterium carotovorum} SCOP: b.82.2.8 PDB: 1nx4_A*
Probab=22.26 E-value=58 Score=23.93 Aligned_cols=27 Identities=7% Similarity=0.330 Sum_probs=22.4
Q ss_pred cEEEeCCCCCcccHHHHHHhccCCCceeE
Q psy9171 31 RVIHIRNIPNEVTEAEIIHLGIPFGRVTN 59 (118)
Q Consensus 31 ~vL~V~NLP~~vte~dL~~Lf~~fG~V~~ 59 (118)
-++++|+.| ++.+++.++...||.+..
T Consensus 40 G~v~~rg~~--~~~~~~~~~~~~~G~~~~ 66 (273)
T 1nx8_A 40 GFVVVKNLD--IDSDTFRDIYSAYGTIVE 66 (273)
T ss_dssp CEEEECSCC--CCHHHHHHHHHTTSEECC
T ss_pred CEEEECCCC--CCHHHHHHHHHHhCCccc
Confidence 489999998 478899999999998653
No 232
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=21.50 E-value=29 Score=25.81 Aligned_cols=34 Identities=15% Similarity=0.087 Sum_probs=26.6
Q ss_pred cEEEeCCCCCcccHHHHHHhccCCCceeEEEEec
Q psy9171 31 RVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK 64 (118)
Q Consensus 31 ~vL~V~NLP~~vte~dL~~Lf~~fG~V~~v~l~~ 64 (118)
+.+-|+|+|+.++..-|..++..-..+....++-
T Consensus 96 ~~~vv~NlPy~i~~~il~~ll~~~~~~~~~~~m~ 129 (249)
T 3ftd_A 96 ELKVVGNLPYNVASLIIENTVYNKDCVPLAVFMV 129 (249)
T ss_dssp SEEEEEECCTTTHHHHHHHHHHTGGGCSEEEEEE
T ss_pred CcEEEEECchhccHHHHHHHHhcCCCCceEEEEE
Confidence 5688999999999999999887765555555543
No 233
>3h87_C Putative uncharacterized protein; toxin antitoxin complex, vapbc complex, RHH motif, structura genomics; 1.49A {Mycobacterium tuberculosis}
Probab=20.83 E-value=12 Score=23.87 Aligned_cols=11 Identities=45% Similarity=0.881 Sum_probs=8.8
Q ss_pred EEEeCCCCCcc
Q psy9171 32 VIHIRNIPNEV 42 (118)
Q Consensus 32 vL~V~NLP~~v 42 (118)
.|.|||||+++
T Consensus 3 ~i~IRnvpdev 13 (73)
T 3h87_C 3 DVLIRDIPDDV 13 (73)
T ss_dssp CCCCCCCCHHH
T ss_pred ceeecCCCHHH
Confidence 47899999865
Done!