Your job contains 1 sequence.
>psy9171
MKDIGGNVKYTLVMVVQAKLDRQKSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNV
LVLKGKNQLLLHLEAEIIHLGIPFGRVTNVLVLKGKNQVSLISGYRNRQSAALMMIIK
The BLAST search returned 5 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy9171
(118 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|F6Q0P6 - symbol:PTBP2 "Uncharacterized protein"... 170 7.2e-15 2
UNIPROTKB|B4DI28 - symbol:PTBP2 "cDNA FLJ55578, highly si... 170 4.3e-14 2
UNIPROTKB|K7EKJ7 - symbol:PTBP1 "Polypyrimidine tract-bin... 159 6.2e-14 2
UNIPROTKB|K7ES59 - symbol:PTBP1 "Polypyrimidine tract-bin... 159 6.2e-14 2
UNIPROTKB|F1NRD6 - symbol:PTBP2 "Uncharacterized protein"... 171 3.3e-13 2
UNIPROTKB|Q9UKA9 - symbol:PTBP2 "Polypyrimidine tract-bin... 170 4.2e-13 2
MGI|MGI:1860489 - symbol:Ptbp2 "polypyrimidine tract bind... 170 4.2e-13 2
RGD|1359267 - symbol:Ptbp2 "polypyrimidine tract binding ... 170 4.2e-13 2
UNIPROTKB|E2RSK4 - symbol:PTBP2 "Uncharacterized protein"... 170 4.2e-13 2
UNIPROTKB|B4DSS8 - symbol:PTBP2 "Polypyrimidine tract-bin... 170 4.7e-13 2
UNIPROTKB|F1P5K0 - symbol:PTBP1 "Uncharacterized protein"... 166 5.4e-13 2
UNIPROTKB|E1BVR1 - symbol:PTBP1 "Uncharacterized protein"... 166 5.6e-13 2
UNIPROTKB|A8YXY5 - symbol:PTBP1 "PTBP1 protein" species:9... 162 1.3e-12 2
ZFIN|ZDB-GENE-091116-1 - symbol:ptbp3 "polypyrimidine tra... 164 1.8e-12 2
ZFIN|ZDB-GENE-050522-492 - symbol:ptbp1a "polypyrimidine ... 165 1.9e-12 2
UNIPROTKB|F1S6R7 - symbol:PTBP1 "Polypyrimidine tract-bin... 163 2.2e-12 2
UNIPROTKB|Q29099 - symbol:PTBP1 "Polypyrimidine tract-bin... 163 2.2e-12 2
ZFIN|ZDB-GENE-050320-141 - symbol:ptbp2a "polypyrimidine ... 174 2.2e-12 1
MGI|MGI:97791 - symbol:Ptbp1 "polypyrimidine tract bindin... 162 2.3e-12 2
UNIPROTKB|D4AB53 - symbol:Ptbp1 "Polypyrimidine tract-bin... 162 2.4e-12 2
UNIPROTKB|Q8WN55 - symbol:PTBP1 "Polypyrimidine tract-bin... 162 2.4e-12 2
UNIPROTKB|F1LM18 - symbol:Ptbp1 "Polypyrimidine tract-bin... 162 2.8e-12 2
RGD|62047 - symbol:Ptbp1 "polypyrimidine tract binding pr... 162 2.8e-12 2
UNIPROTKB|Q6P736 - symbol:Ptbp1 "Polypyrimidine tract bin... 162 2.8e-12 2
UNIPROTKB|J9P5T5 - symbol:PTBP1 "Uncharacterized protein"... 162 2.8e-12 2
UNIPROTKB|F1PCJ7 - symbol:PTBP1 "Uncharacterized protein"... 162 2.8e-12 2
UNIPROTKB|P26599 - symbol:PTBP1 "Polypyrimidine tract-bin... 159 5.0e-12 2
ZFIN|ZDB-GENE-060810-49 - symbol:ptbp2b "polypyrimidine t... 171 5.1e-12 1
UNIPROTKB|K7ELW5 - symbol:PTBP1 "Polypyrimidine tract-bin... 159 1.0e-11 1
FB|FBgn0011224 - symbol:heph "hephaestus" species:7227 "D... 169 1.5e-11 1
ZFIN|ZDB-GENE-030131-9796 - symbol:ptbp1b "polypyrimidine... 165 2.6e-11 1
UNIPROTKB|O95758 - symbol:PTBP3 "Polypyrimidine tract-bin... 164 3.0e-11 1
UNIPROTKB|F1PXP9 - symbol:PTBP3 "Uncharacterized protein"... 160 7.5e-11 1
UNIPROTKB|F1MPG6 - symbol:F1MPG6 "Uncharacterized protein... 160 7.5e-11 1
UNIPROTKB|Q06A95 - symbol:ROD1 "ROD1" species:9823 "Sus s... 160 7.5e-11 1
UNIPROTKB|E1C5J2 - symbol:E1C5J2 "Uncharacterized protein... 153 1.1e-10 1
MGI|MGI:1923334 - symbol:Ptbp3 "polypyrimidine tract bind... 156 2.0e-10 1
RGD|621671 - symbol:Ptbp3 "polypyrimidine tract binding p... 156 2.0e-10 1
UNIPROTKB|F1ND44 - symbol:F1ND44 "Uncharacterized protein... 153 2.1e-10 1
UNIPROTKB|F1LY02 - symbol:F1LY02 "Uncharacterized protein... 128 1.9e-07 1
RGD|727953 - symbol:Smptb "polypyrimidine tract-binding p... 120 1.8e-06 1
DICTYBASE|DDB_G0284321 - symbol:DDB_G0284321 "putative po... 119 4.0e-06 1
UNIPROTKB|F1NIY4 - symbol:RBM20 "Uncharacterized protein"... 111 9.0e-06 1
WB|WBGene00004207 - symbol:ptb-1 species:6239 "Caenorhabd... 112 1.4e-05 1
TAIR|locus:2163746 - symbol:PTB2 "AT5G53180" species:3702... 108 2.2e-05 1
UNIPROTKB|D3ZZG7 - symbol:Rbm20 "RNA-binding protein 20" ... 111 3.6e-05 1
UNIPROTKB|I3LEJ3 - symbol:RBM20 "Uncharacterized protein"... 111 3.9e-05 1
UNIPROTKB|F1S5L8 - symbol:RBM20 "Uncharacterized protein"... 111 3.9e-05 1
UNIPROTKB|F1PLE0 - symbol:RBM20 "Uncharacterized protein"... 111 4.0e-05 1
MGI|MGI:1920963 - symbol:Rbm20 "RNA binding motif protein... 111 4.0e-05 1
RGD|1307427 - symbol:Rbm20 "RNA binding motif protein 20"... 111 4.0e-05 1
UNIPROTKB|F1MF93 - symbol:RBM20 "Uncharacterized protein"... 111 4.0e-05 1
UNIPROTKB|Q5T481 - symbol:RBM20 "RNA-binding protein 20" ... 111 4.1e-05 1
UNIPROTKB|F1PXN8 - symbol:RBM20 "Uncharacterized protein"... 111 4.1e-05 1
TAIR|locus:2018630 - symbol:PTB3 "polypyrimidine tract-bi... 103 7.9e-05 1
DICTYBASE|DDB_G0278105 - symbol:DDB_G0278105 "heterogeneo... 84 0.00022 2
>UNIPROTKB|F6Q0P6 [details] [associations]
symbol:PTBP2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:2000177 "regulation of neural precursor cell
proliferation" evidence=IEA] [GO:0033119 "negative regulation of
RNA splicing" evidence=IEA] [GO:0006376 "mRNA splice site
selection" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0033119
GO:GO:0006376 GeneTree:ENSGT00550000074508 EMBL:DAAA02007826
IPI:IPI00876801 Ensembl:ENSBTAT00000011602 OMA:HICNACC
Uniprot:F6Q0P6
Length = 236
Score = 170 (64.9 bits), Expect = 7.2e-15, Sum P(2) = 7.2e-15
Identities = 31/45 (68%), Positives = 38/45 (84%)
Query: 24 KSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQ 68
K D PSRV+HIR +P EVTE E+I LG+PFG+VTN+L+LKGKNQ
Sbjct: 52 KMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQ 96
Score = 32 (16.3 bits), Expect = 7.2e-15, Sum P(2) = 7.2e-15
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 84 FGRVTNVLVLKGKNQVSLISGYR---NRQSAAL 113
FG V ++ NQ + Y N Q A L
Sbjct: 204 FGAVLKIITFTKNNQFQALLQYGDPVNAQQAKL 236
>UNIPROTKB|B4DI28 [details] [associations]
symbol:PTBP2 "cDNA FLJ55578, highly similar to
Polypyrimidine tract-binding protein 2" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006536 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01649 HOVERGEN:HBG069548
HOGENOM:HOG000231699 EMBL:AL357150 IPI:IPI00647067
UniGene:Hs.269895 UniGene:Hs.596061 HGNC:HGNC:17662 ChiTaRS:PTBP2
EMBL:AK295384 SMR:B4DI28 STRING:B4DI28 Ensembl:ENST00000541987
Uniprot:B4DI28
Length = 325
Score = 170 (64.9 bits), Expect = 4.3e-14, Sum P(2) = 4.3e-14
Identities = 31/45 (68%), Positives = 38/45 (84%)
Query: 24 KSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQ 68
K D PSRV+HIR +P EVTE E+I LG+PFG+VTN+L+LKGKNQ
Sbjct: 21 KMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQ 65
Score = 33 (16.7 bits), Expect = 4.3e-14, Sum P(2) = 4.3e-14
Identities = 10/35 (28%), Positives = 14/35 (40%)
Query: 84 FGRVTNVLVLKGKNQVSLISGYR---NRQSAALMM 115
FG V ++ NQ + Y N Q A L +
Sbjct: 173 FGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLAL 207
>UNIPROTKB|K7EKJ7 [details] [associations]
symbol:PTBP1 "Polypyrimidine tract-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC006273 HGNC:HGNC:9583
Ensembl:ENST00000589575 Uniprot:K7EKJ7
Length = 236
Score = 159 (61.0 bits), Expect = 6.2e-14, Sum P(2) = 6.2e-14
Identities = 29/40 (72%), Positives = 36/40 (90%)
Query: 29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQ 68
PSRVIHIR +P +VTE E+I LG+PFG+VTN+L+LKGKNQ
Sbjct: 57 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQ 96
Score = 34 (17.0 bits), Expect = 6.2e-14, Sum P(2) = 6.2e-14
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 84 FGRVTNVLVLKGKNQVSLISGYRNRQSA 111
FG V ++ NQ + Y + SA
Sbjct: 204 FGTVLKIITFTKNNQFQALLQYADPVSA 231
>UNIPROTKB|K7ES59 [details] [associations]
symbol:PTBP1 "Polypyrimidine tract-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC006273 HGNC:HGNC:9583
Ensembl:ENST00000586481 Uniprot:K7ES59
Length = 209
Score = 159 (61.0 bits), Expect = 6.2e-14, Sum P(2) = 6.2e-14
Identities = 29/40 (72%), Positives = 36/40 (90%)
Query: 29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQ 68
PSRVIHIR +P +VTE E+I LG+PFG+VTN+L+LKGKNQ
Sbjct: 27 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQ 66
Score = 34 (17.0 bits), Expect = 6.2e-14, Sum P(2) = 6.2e-14
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 84 FGRVTNVLVLKGKNQVSLISGYRNRQSA 111
FG V ++ NQ + Y + SA
Sbjct: 177 FGTVLKIITFTKNNQFQALLQYADPVSA 204
>UNIPROTKB|F1NRD6 [details] [associations]
symbol:PTBP2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0006376 "mRNA splice site selection"
evidence=IEA] [GO:0033119 "negative regulation of RNA splicing"
evidence=IEA] [GO:2000177 "regulation of neural precursor cell
proliferation" evidence=IEA] InterPro:IPR000504 InterPro:IPR006536
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0033119
GO:GO:0006376 TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508
OMA:QSQLAMS EMBL:AADN02012892 IPI:IPI00602746
Ensembl:ENSGALT00000008906 ArrayExpress:F1NRD6 Uniprot:F1NRD6
Length = 532
Score = 171 (65.3 bits), Expect = 3.3e-13, Sum P(2) = 3.3e-13
Identities = 31/45 (68%), Positives = 38/45 (84%)
Query: 24 KSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQ 68
K D PSRV+HIR +P EVTE E+I LG+PFG+VTN+L+LKGKNQ
Sbjct: 52 KMDGSPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQ 96
Score = 33 (16.7 bits), Expect = 3.3e-13, Sum P(2) = 3.3e-13
Identities = 10/35 (28%), Positives = 14/35 (40%)
Query: 84 FGRVTNVLVLKGKNQVSLISGYR---NRQSAALMM 115
FG V ++ NQ + Y N Q A L +
Sbjct: 204 FGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLAL 238
>UNIPROTKB|Q9UKA9 [details] [associations]
symbol:PTBP2 "Polypyrimidine tract-binding protein 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0006376 "mRNA splice site
selection" evidence=IEA] [GO:2000177 "regulation of neural
precursor cell proliferation" evidence=IEA] [GO:0033119 "negative
regulation of RNA splicing" evidence=IDA] InterPro:IPR000504
InterPro:IPR006536 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0033119 GO:GO:0006376 TIGRFAMs:TIGR01649 KO:K14948
HOVERGEN:HBG069548 eggNOG:NOG263741 EMBL:AF176085 EMBL:AB051232
EMBL:AB051233 EMBL:AF530580 EMBL:AF530581 EMBL:AF530582
EMBL:AF530583 EMBL:BK000526 EMBL:AL357150 EMBL:BC016582
IPI:IPI00254162 IPI:IPI00514064 IPI:IPI00641664 IPI:IPI00647067
IPI:IPI00743676 IPI:IPI00748295 RefSeq:NP_067013.1
UniGene:Hs.269895 UniGene:Hs.596061 PDB:2CQ1 PDBsum:2CQ1
ProteinModelPortal:Q9UKA9 SMR:Q9UKA9 IntAct:Q9UKA9
MINT:MINT-1483252 STRING:Q9UKA9 PhosphoSite:Q9UKA9 DMDM:74761983
REPRODUCTION-2DPAGE:IPI00647067 PaxDb:Q9UKA9 PRIDE:Q9UKA9
DNASU:58155 Ensembl:ENST00000236228 Ensembl:ENST00000370197
Ensembl:ENST00000370198 Ensembl:ENST00000426398 GeneID:58155
KEGG:hsa:58155 UCSC:uc001drn.2 UCSC:uc001dro.2 UCSC:uc001drq.3
UCSC:uc001drr.3 CTD:58155 GeneCards:GC01P097187 HGNC:HGNC:17662
HPA:HPA047420 MIM:608449 neXtProt:NX_Q9UKA9 PharmGKB:PA33935
OrthoDB:EOG473PSG ChiTaRS:PTBP2 EvolutionaryTrace:Q9UKA9
GenomeRNAi:58155 NextBio:64859 ArrayExpress:Q9UKA9 Bgee:Q9UKA9
CleanEx:HS_PTBP2 Genevestigator:Q9UKA9 GermOnline:ENSG00000117569
Uniprot:Q9UKA9
Length = 531
Score = 170 (64.9 bits), Expect = 4.2e-13, Sum P(2) = 4.2e-13
Identities = 31/45 (68%), Positives = 38/45 (84%)
Query: 24 KSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQ 68
K D PSRV+HIR +P EVTE E+I LG+PFG+VTN+L+LKGKNQ
Sbjct: 52 KMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQ 96
Score = 33 (16.7 bits), Expect = 4.2e-13, Sum P(2) = 4.2e-13
Identities = 10/35 (28%), Positives = 14/35 (40%)
Query: 84 FGRVTNVLVLKGKNQVSLISGYR---NRQSAALMM 115
FG V ++ NQ + Y N Q A L +
Sbjct: 204 FGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLAL 238
>MGI|MGI:1860489 [details] [associations]
symbol:Ptbp2 "polypyrimidine tract binding protein 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IDA] [GO:0006376 "mRNA splice site selection"
evidence=IMP;IDA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0033119 "negative
regulation of RNA splicing" evidence=ISO] [GO:2000177 "regulation
of neural precursor cell proliferation" evidence=IMP]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1860489 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0033119
GO:GO:0006376 TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508
GO:GO:2000177 KO:K14948 HOVERGEN:HBG069548 eggNOG:NOG263741
HOGENOM:HOG000231699 CTD:58155 OrthoDB:EOG473PSG ChiTaRS:PTBP2
EMBL:AF095718 EMBL:AK013734 EMBL:AK137348 EMBL:BC010255
EMBL:AY333752 EMBL:BK000527 IPI:IPI00136002 IPI:IPI00751759
RefSeq:NP_062423.1 UniGene:Mm.29966 ProteinModelPortal:Q91Z31
SMR:Q91Z31 IntAct:Q91Z31 STRING:Q91Z31 PhosphoSite:Q91Z31
PaxDb:Q91Z31 PRIDE:Q91Z31 Ensembl:ENSMUST00000029780 GeneID:56195
KEGG:mmu:56195 UCSC:uc008rdi.1 UCSC:uc008rdk.2 InParanoid:Q91Z31
OMA:QSQLAMS NextBio:312010 Bgee:Q91Z31 CleanEx:MM_PTBP2
Genevestigator:Q91Z31 GermOnline:ENSMUSG00000028134 Uniprot:Q91Z31
Length = 531
Score = 170 (64.9 bits), Expect = 4.2e-13, Sum P(2) = 4.2e-13
Identities = 31/45 (68%), Positives = 38/45 (84%)
Query: 24 KSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQ 68
K D PSRV+HIR +P EVTE E+I LG+PFG+VTN+L+LKGKNQ
Sbjct: 52 KMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQ 96
Score = 33 (16.7 bits), Expect = 4.2e-13, Sum P(2) = 4.2e-13
Identities = 10/35 (28%), Positives = 14/35 (40%)
Query: 84 FGRVTNVLVLKGKNQVSLISGYR---NRQSAALMM 115
FG V ++ NQ + Y N Q A L +
Sbjct: 204 FGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLAL 238
>RGD|1359267 [details] [associations]
symbol:Ptbp2 "polypyrimidine tract binding protein 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA;ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA;ISO] [GO:0006376
"mRNA splice site selection" evidence=IEA;ISO] [GO:0033119
"negative regulation of RNA splicing" evidence=IEA;ISO] [GO:2000177
"regulation of neural precursor cell proliferation"
evidence=IEA;ISO] InterPro:IPR000504 InterPro:IPR006536
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 RGD:1359267
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0033119 GO:GO:0006376 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 KO:K14948 HOVERGEN:HBG069548
eggNOG:NOG263741 HOGENOM:HOG000231699 CTD:58155 OrthoDB:EOG473PSG
EMBL:AJ010585 EMBL:BC082076 EMBL:AY333750 IPI:IPI00471764
IPI:IPI00758469 RefSeq:NP_001005555.1 UniGene:Rn.64916
ProteinModelPortal:Q66H20 SMR:Q66H20 STRING:Q66H20 PRIDE:Q66H20
Ensembl:ENSRNOT00000015036 GeneID:310820 KEGG:rno:310820
UCSC:RGD:1359267 InParanoid:Q66H20 NextBio:662705
Genevestigator:Q66H20 GermOnline:ENSRNOG00000010827 Uniprot:Q66H20
Length = 531
Score = 170 (64.9 bits), Expect = 4.2e-13, Sum P(2) = 4.2e-13
Identities = 31/45 (68%), Positives = 38/45 (84%)
Query: 24 KSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQ 68
K D PSRV+HIR +P EVTE E+I LG+PFG+VTN+L+LKGKNQ
Sbjct: 52 KMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQ 96
Score = 33 (16.7 bits), Expect = 4.2e-13, Sum P(2) = 4.2e-13
Identities = 10/35 (28%), Positives = 14/35 (40%)
Query: 84 FGRVTNVLVLKGKNQVSLISGYR---NRQSAALMM 115
FG V ++ NQ + Y N Q A L +
Sbjct: 204 FGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLAL 238
>UNIPROTKB|E2RSK4 [details] [associations]
symbol:PTBP2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:2000177 "regulation of neural precursor cell
proliferation" evidence=IEA] [GO:0033119 "negative regulation of
RNA splicing" evidence=IEA] [GO:0006376 "mRNA splice site
selection" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006536 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0033119 GO:GO:0006376 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 OMA:QSQLAMS EMBL:AAEX03004787
EMBL:AAEX03004788 EMBL:AAEX03004789 EMBL:AAEX03004790
ProteinModelPortal:E2RSK4 PRIDE:E2RSK4 Ensembl:ENSCAFT00000031985
Uniprot:E2RSK4
Length = 532
Score = 170 (64.9 bits), Expect = 4.2e-13, Sum P(2) = 4.2e-13
Identities = 31/45 (68%), Positives = 38/45 (84%)
Query: 24 KSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQ 68
K D PSRV+HIR +P EVTE E+I LG+PFG+VTN+L+LKGKNQ
Sbjct: 52 KMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQ 96
Score = 33 (16.7 bits), Expect = 4.2e-13, Sum P(2) = 4.2e-13
Identities = 10/35 (28%), Positives = 14/35 (40%)
Query: 84 FGRVTNVLVLKGKNQVSLISGYR---NRQSAALMM 115
FG V ++ NQ + Y N Q A L +
Sbjct: 204 FGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLAL 238
>UNIPROTKB|B4DSS8 [details] [associations]
symbol:PTBP2 "Polypyrimidine tract-binding protein 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01649
HOVERGEN:HBG069548 HOGENOM:HOG000231699 EMBL:AL357150
IPI:IPI00254162 UniGene:Hs.269895 UniGene:Hs.596061 HGNC:HGNC:17662
ChiTaRS:PTBP2 OMA:QSQLAMS EMBL:AK299897 SMR:B4DSS8 STRING:B4DSS8
Ensembl:ENST00000394184 UCSC:uc010otz.1 Uniprot:B4DSS8
Length = 548
Score = 170 (64.9 bits), Expect = 4.7e-13, Sum P(2) = 4.7e-13
Identities = 31/45 (68%), Positives = 38/45 (84%)
Query: 24 KSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQ 68
K D PSRV+HIR +P EVTE E+I LG+PFG+VTN+L+LKGKNQ
Sbjct: 63 KMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQ 107
Score = 33 (16.7 bits), Expect = 4.7e-13, Sum P(2) = 4.7e-13
Identities = 10/35 (28%), Positives = 14/35 (40%)
Query: 84 FGRVTNVLVLKGKNQVSLISGYR---NRQSAALMM 115
FG V ++ NQ + Y N Q A L +
Sbjct: 215 FGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLAL 249
>UNIPROTKB|F1P5K0 [details] [associations]
symbol:PTBP1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006536 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508
EMBL:AADN02066656 EMBL:AADN02066657 EMBL:AADN02066658
EMBL:AADN02066659 IPI:IPI00571435 Ensembl:ENSGALT00000003039
ArrayExpress:F1P5K0 Uniprot:F1P5K0
Length = 527
Score = 166 (63.5 bits), Expect = 5.4e-13, Sum P(2) = 5.4e-13
Identities = 29/40 (72%), Positives = 38/40 (95%)
Query: 29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQ 68
PSRVIH+R +P++VTEAE+I LG+PFG+VTN+L+LKGKNQ
Sbjct: 27 PSRVIHVRKLPSDVTEAEVISLGLPFGKVTNLLMLKGKNQ 66
Score = 36 (17.7 bits), Expect = 5.4e-13, Sum P(2) = 5.4e-13
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 84 FGRVTNVLVLKGKNQVSLISGYRNRQSA 111
FG V ++ NQ + Y + SA
Sbjct: 178 FGTVLKIITFTKNNQFQALLQYADPMSA 205
>UNIPROTKB|E1BVR1 [details] [associations]
symbol:PTBP1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0036002 "pre-mRNA binding"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0051148 "negative regulation of
muscle cell differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR006536 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0048025 GO:GO:0000381 GO:GO:0036002 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 OMA:SEECAQT GO:GO:0051148
EMBL:AADN02066656 EMBL:AADN02066657 EMBL:AADN02066658
EMBL:AADN02066659 IPI:IPI00684956 ProteinModelPortal:E1BVR1
Ensembl:ENSGALT00000003042 ArrayExpress:E1BVR1 Uniprot:E1BVR1
Length = 532
Score = 166 (63.5 bits), Expect = 5.6e-13, Sum P(2) = 5.6e-13
Identities = 29/40 (72%), Positives = 38/40 (95%)
Query: 29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQ 68
PSRVIH+R +P++VTEAE+I LG+PFG+VTN+L+LKGKNQ
Sbjct: 27 PSRVIHVRKLPSDVTEAEVISLGLPFGKVTNLLMLKGKNQ 66
Score = 36 (17.7 bits), Expect = 5.6e-13, Sum P(2) = 5.6e-13
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 84 FGRVTNVLVLKGKNQVSLISGYRNRQSA 111
FG V ++ NQ + Y + SA
Sbjct: 183 FGTVLKIITFTKNNQFQALLQYADPMSA 210
>UNIPROTKB|A8YXY5 [details] [associations]
symbol:PTBP1 "PTBP1 protein" species:9913 "Bos taurus"
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006536 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508
UniGene:Bt.9031 HOVERGEN:HBG069548 EMBL:DAAA02020232 EMBL:BC103383
IPI:IPI00968681 SMR:A8YXY5 Ensembl:ENSBTAT00000066124
Uniprot:A8YXY5
Length = 446
Score = 162 (62.1 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 29/40 (72%), Positives = 36/40 (90%)
Query: 29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQ 68
PSRVIHIR +P +VTE E+I LG+PFG+VTN+L+LKGKNQ
Sbjct: 57 PSRVIHIRKLPGDVTEGEVISLGLPFGKVTNLLMLKGKNQ 96
Score = 34 (17.0 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 84 FGRVTNVLVLKGKNQVSLISGYRNRQSA 111
FG V ++ NQ + Y + SA
Sbjct: 207 FGTVLKIITFTKNNQFQALLQYADPVSA 234
>ZFIN|ZDB-GENE-091116-1 [details] [associations]
symbol:ptbp3 "polypyrimidine tract binding protein 3"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-091116-1 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508 CTD:9991
OMA:PPSVTMD EMBL:BX510369 EMBL:CR931761 IPI:IPI00493597
RefSeq:XP_001335967.1 UniGene:Dr.40305 Ensembl:ENSDART00000040308
Ensembl:ENSDART00000146727 GeneID:798982 KEGG:dre:798982
NextBio:20933630 Uniprot:E7FB37
Length = 522
Score = 164 (62.8 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 32/52 (61%), Positives = 42/52 (80%)
Query: 17 QAKLDRQKSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQ 68
Q K DR S PSRV+H+R +P EV+EAE++ LG+PFG+VTN+L+LKGKNQ
Sbjct: 17 QYKGDR--SPCAPSRVLHVRKVPIEVSEAEVVSLGVPFGKVTNLLMLKGKNQ 66
Score = 33 (16.7 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 84 FGRVTNVLVLKGKNQVSLISGYRNRQSA 111
FG V ++ NQ + Y + +A
Sbjct: 176 FGTVLKIITFTKNNQFQALLQYADPMNA 203
>ZFIN|ZDB-GENE-050522-492 [details] [associations]
symbol:ptbp1a "polypyrimidine tract binding protein
1a" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0060472 "positive regulation of cortical granule exocytosis by
elevation of cytosolic calcium ion concentration" evidence=IMP]
[GO:0009953 "dorsal/ventral pattern formation" evidence=IMP]
[GO:0045746 "negative regulation of Notch signaling pathway"
evidence=IMP] [GO:0060729 "intestinal epithelial structure
maintenance" evidence=IMP] InterPro:IPR000504 InterPro:IPR006536
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050522-492 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0009953 GO:GO:0045746
TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508 HOVERGEN:HBG069548
KO:K13218 OMA:SEECAQT eggNOG:NOG263741 HOGENOM:HOG000231699
OrthoDB:EOG4GMTXQ GO:GO:0060729 EMBL:CR788230 EMBL:BC095372
IPI:IPI00607308 RefSeq:NP_001018313.1 UniGene:Dr.45492 SMR:Q503D3
Ensembl:ENSDART00000017668 GeneID:323490 KEGG:dre:323490 CTD:323490
InParanoid:Q503D3 NextBio:20808275 GO:GO:0060472 Uniprot:Q503D3
Length = 574
Score = 165 (63.1 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 28/40 (70%), Positives = 37/40 (92%)
Query: 29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQ 68
PSRVIH+R +PN++ EAE+I LG+PFG+VTN+L+LKGKNQ
Sbjct: 72 PSRVIHVRKLPNDINEAEVISLGLPFGKVTNLLMLKGKNQ 111
Score = 33 (16.7 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 84 FGRVTNVLVLKGKNQVSLISGYRNRQSA 111
FG V ++ NQ + Y + +A
Sbjct: 217 FGTVLKIITFTKNNQFQALVQYSDGMTA 244
>UNIPROTKB|F1S6R7 [details] [associations]
symbol:PTBP1 "Polypyrimidine tract-binding protein 1"
species:9823 "Sus scrofa" [GO:0051148 "negative regulation of
muscle cell differentiation" evidence=IEA] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=IEA]
[GO:0036002 "pre-mRNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0048025 GO:GO:0000381
GO:GO:0036002 TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508
OMA:SEECAQT GO:GO:0051148 EMBL:FP015903 Ensembl:ENSSSCT00000014665
Uniprot:F1S6R7
Length = 557
Score = 163 (62.4 bits), Expect = 2.2e-12, Sum P(2) = 2.2e-12
Identities = 29/40 (72%), Positives = 37/40 (92%)
Query: 29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQ 68
PSRVIHIR +P++VTE E+I LG+PFG+VTN+L+LKGKNQ
Sbjct: 57 PSRVIHIRKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQ 96
Score = 34 (17.0 bits), Expect = 2.2e-12, Sum P(2) = 2.2e-12
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 84 FGRVTNVLVLKGKNQVSLISGYRNRQSA 111
FG V ++ NQ + Y + SA
Sbjct: 207 FGTVLKIITFTKNNQFQALLQYADPVSA 234
>UNIPROTKB|Q29099 [details] [associations]
symbol:PTBP1 "Polypyrimidine tract-binding protein 1"
species:9823 "Sus scrofa" [GO:0051148 "negative regulation of
muscle cell differentiation" evidence=ISS] [GO:0000381 "regulation
of alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006536
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0048025 GO:GO:0000381 TIGRFAMs:TIGR01649
CTD:5725 HOVERGEN:HBG069548 KO:K13218 GO:GO:0051148
eggNOG:NOG263741 HOGENOM:HOG000231699 EMBL:X93009 PIR:S68857
RefSeq:NP_999396.1 UniGene:Ssc.16210 ProteinModelPortal:Q29099
SMR:Q29099 STRING:Q29099 PRIDE:Q29099 GeneID:397461 KEGG:ssc:397461
OrthoDB:EOG4GMTXQ Uniprot:Q29099
Length = 557
Score = 163 (62.4 bits), Expect = 2.2e-12, Sum P(2) = 2.2e-12
Identities = 29/40 (72%), Positives = 37/40 (92%)
Query: 29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQ 68
PSRVIHIR +P++VTE E+I LG+PFG+VTN+L+LKGKNQ
Sbjct: 57 PSRVIHIRKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQ 96
Score = 34 (17.0 bits), Expect = 2.2e-12, Sum P(2) = 2.2e-12
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 84 FGRVTNVLVLKGKNQVSLISGYRNRQSA 111
FG V ++ NQ + Y + SA
Sbjct: 207 FGTVLKIITFTKNNQFQALLQYADPVSA 234
>ZFIN|ZDB-GENE-050320-141 [details] [associations]
symbol:ptbp2a "polypyrimidine tract binding protein
2a" species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-050320-141
GO:GO:0005634 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508
EMBL:CU896585 IPI:IPI00996240 Ensembl:ENSDART00000123275
Bgee:F1QG05 Uniprot:F1QG05
Length = 512
Score = 174 (66.3 bits), Expect = 2.2e-12, P = 2.2e-12
Identities = 31/50 (62%), Positives = 42/50 (84%)
Query: 19 KLDRQKSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQ 68
+++ + D PSRV+HIR +PN+V+EAEII LG+PFG+VTN+L LKGKNQ
Sbjct: 48 RVEERVGDAPPSRVLHIRKLPNDVSEAEIIALGLPFGKVTNILTLKGKNQ 97
>MGI|MGI:97791 [details] [associations]
symbol:Ptbp1 "polypyrimidine tract binding protein 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0033119 "negative regulation of RNA
splicing" evidence=ISO] [GO:0036002 "pre-mRNA binding"
evidence=ISO] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=ISO] [GO:0051148 "negative regulation of
muscle cell differentiation" evidence=ISO] InterPro:IPR000504
InterPro:IPR006536 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
MGI:MGI:97791 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0048025
GO:GO:0000381 TIGRFAMs:TIGR01649 HOVERGEN:HBG069548 GO:GO:0051148
eggNOG:NOG263741 HOGENOM:HOG000231699 EMBL:X52101 IPI:IPI00749991
UniGene:Mm.265610 ProteinModelPortal:P17225 SMR:P17225
MINT:MINT-1862139 STRING:P17225 PhosphoSite:P17225 PaxDb:P17225
PRIDE:P17225 ChiTaRS:PTBP1 CleanEx:MM_PTBP1 Genevestigator:P17225
GermOnline:ENSMUSG00000006498 Uniprot:P17225
Length = 527
Score = 162 (62.1 bits), Expect = 2.3e-12, Sum P(2) = 2.3e-12
Identities = 28/40 (70%), Positives = 37/40 (92%)
Query: 29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQ 68
PSRVIH+R +P++VTE E+I LG+PFG+VTN+L+LKGKNQ
Sbjct: 56 PSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQ 95
Score = 34 (17.0 bits), Expect = 2.3e-12, Sum P(2) = 2.3e-12
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 84 FGRVTNVLVLKGKNQVSLISGYRNRQSA 111
FG V ++ NQ + Y + SA
Sbjct: 206 FGTVLKIITFTKNNQFQALLQYADPVSA 233
>UNIPROTKB|D4AB53 [details] [associations]
symbol:Ptbp1 "Polypyrimidine tract-binding protein 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 RGD:62047 GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01649
IPI:IPI00390801 Ensembl:ENSRNOT00000030365 ArrayExpress:D4AB53
Uniprot:D4AB53
Length = 528
Score = 162 (62.1 bits), Expect = 2.4e-12, Sum P(2) = 2.4e-12
Identities = 28/40 (70%), Positives = 37/40 (92%)
Query: 29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQ 68
PSRVIH+R +P++VTE E+I LG+PFG+VTN+L+LKGKNQ
Sbjct: 56 PSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQ 95
Score = 34 (17.0 bits), Expect = 2.4e-12, Sum P(2) = 2.4e-12
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 84 FGRVTNVLVLKGKNQVSLISGYRNRQSA 111
FG V ++ NQ + Y + SA
Sbjct: 206 FGTVLKIITFTKNNQFQALLQYADPVSA 233
>UNIPROTKB|Q8WN55 [details] [associations]
symbol:PTBP1 "Polypyrimidine tract-binding protein 1"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=ISS]
[GO:0051148 "negative regulation of muscle cell differentiation"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0048025 "negative regulation of
mRNA splicing, via spliceosome" evidence=IEA] [GO:0036002 "pre-mRNA
binding" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006536
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0048025 GO:GO:0000381 GO:GO:0036002 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 EMBL:AF445640 IPI:IPI00712263
RefSeq:NP_776867.1 UniGene:Bt.9031 ProteinModelPortal:Q8WN55
SMR:Q8WN55 PRIDE:Q8WN55 Ensembl:ENSBTAT00000066209 GeneID:282018
KEGG:bta:282018 CTD:5725 HOVERGEN:HBG069548 KO:K13218 OMA:SEECAQT
NextBio:20805882 ArrayExpress:Q8WN55 GO:GO:0051148 Uniprot:Q8WN55
Length = 531
Score = 162 (62.1 bits), Expect = 2.4e-12, Sum P(2) = 2.4e-12
Identities = 29/40 (72%), Positives = 36/40 (90%)
Query: 29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQ 68
PSRVIHIR +P +VTE E+I LG+PFG+VTN+L+LKGKNQ
Sbjct: 57 PSRVIHIRKLPGDVTEGEVISLGLPFGKVTNLLMLKGKNQ 96
Score = 34 (17.0 bits), Expect = 2.4e-12, Sum P(2) = 2.4e-12
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 84 FGRVTNVLVLKGKNQVSLISGYRNRQSA 111
FG V ++ NQ + Y + SA
Sbjct: 207 FGTVLKIITFTKNNQFQALLQYADPVSA 234
>UNIPROTKB|F1LM18 [details] [associations]
symbol:Ptbp1 "Polypyrimidine tract-binding protein 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 RGD:62047 GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 IPI:IPI00562850
Ensembl:ENSRNOT00000044865 ArrayExpress:F1LM18 Uniprot:F1LM18
Length = 554
Score = 162 (62.1 bits), Expect = 2.8e-12, Sum P(2) = 2.8e-12
Identities = 28/40 (70%), Positives = 37/40 (92%)
Query: 29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQ 68
PSRVIH+R +P++VTE E+I LG+PFG+VTN+L+LKGKNQ
Sbjct: 56 PSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQ 95
Score = 34 (17.0 bits), Expect = 2.8e-12, Sum P(2) = 2.8e-12
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 84 FGRVTNVLVLKGKNQVSLISGYRNRQSA 111
FG V ++ NQ + Y + SA
Sbjct: 206 FGTVLKIITFTKNNQFQALLQYADPVSA 233
>RGD|62047 [details] [associations]
symbol:Ptbp1 "polypyrimidine tract binding protein 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO;ISS] [GO:0003697 "single-stranded DNA
binding" evidence=TAS] [GO:0003723 "RNA binding" evidence=IEA;TAS]
[GO:0004519 "endonuclease activity" evidence=TAS] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0033119
"negative regulation of RNA splicing" evidence=ISO] [GO:0036002
"pre-mRNA binding" evidence=ISO] [GO:0048025 "negative regulation of
mRNA splicing, via spliceosome" evidence=ISO;ISS] [GO:0051148
"negative regulation of muscle cell differentiation"
evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR006536
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 RGD:62047
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697 GO:GO:0004519
GO:GO:0048025 GO:GO:0000381 TIGRFAMs:TIGR01649 HOVERGEN:HBG069548
GO:GO:0051148 eggNOG:NOG263741 HOGENOM:HOG000231699 EMBL:X60789
EMBL:X60790 EMBL:X74565 IPI:IPI00231555 IPI:IPI00390239 PIR:S15552
PIR:S36629 UniGene:Rn.64440 ProteinModelPortal:Q00438 SMR:Q00438
STRING:Q00438 PhosphoSite:Q00438 PRIDE:Q00438 UCSC:RGD:62047
InParanoid:Q00438 ChEMBL:CHEMBL2786 NextBio:609388
ArrayExpress:Q00438 Genevestigator:Q00438
GermOnline:ENSRNOG00000010448 Uniprot:Q00438
Length = 555
Score = 162 (62.1 bits), Expect = 2.8e-12, Sum P(2) = 2.8e-12
Identities = 28/40 (70%), Positives = 37/40 (92%)
Query: 29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQ 68
PSRVIH+R +P++VTE E+I LG+PFG+VTN+L+LKGKNQ
Sbjct: 56 PSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQ 95
Score = 34 (17.0 bits), Expect = 2.8e-12, Sum P(2) = 2.8e-12
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 84 FGRVTNVLVLKGKNQVSLISGYRNRQSA 111
FG V ++ NQ + Y + SA
Sbjct: 206 FGTVLKIITFTKNNQFQALLQYADPVSA 233
>UNIPROTKB|Q6P736 [details] [associations]
symbol:Ptbp1 "Polypyrimidine tract binding protein 1,
isoform CRA_a" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006536 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
RGD:62047 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH474029 TIGRFAMs:TIGR01649
CTD:5725 HOVERGEN:HBG069548 KO:K13218 HOGENOM:HOG000231699
OrthoDB:EOG4GMTXQ IPI:IPI00390239 UniGene:Rn.64440 EMBL:BC061858
RefSeq:NP_001257986.1 RefSeq:NP_071961.2 SMR:Q6P736 STRING:Q6P736
Ensembl:ENSRNOT00000030357 GeneID:29497 KEGG:rno:29497
InParanoid:Q6P736 Genevestigator:Q6P736 Uniprot:Q6P736
Length = 556
Score = 162 (62.1 bits), Expect = 2.8e-12, Sum P(2) = 2.8e-12
Identities = 28/40 (70%), Positives = 37/40 (92%)
Query: 29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQ 68
PSRVIH+R +P++VTE E+I LG+PFG+VTN+L+LKGKNQ
Sbjct: 56 PSRVIHVRKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQ 95
Score = 34 (17.0 bits), Expect = 2.8e-12, Sum P(2) = 2.8e-12
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 84 FGRVTNVLVLKGKNQVSLISGYRNRQSA 111
FG V ++ NQ + Y + SA
Sbjct: 206 FGTVLKIITFTKNNQFQALLQYADPVSA 233
>UNIPROTKB|J9P5T5 [details] [associations]
symbol:PTBP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 CTD:5725 KO:K13218 EMBL:AAEX03012673
RefSeq:XP_542215.2 ProteinModelPortal:J9P5T5
Ensembl:ENSCAFT00000049054 GeneID:485097 KEGG:cfa:485097
Uniprot:J9P5T5
Length = 557
Score = 162 (62.1 bits), Expect = 2.8e-12, Sum P(2) = 2.8e-12
Identities = 29/40 (72%), Positives = 36/40 (90%)
Query: 29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQ 68
PSRVIHIR +P +VTE E+I LG+PFG+VTN+L+LKGKNQ
Sbjct: 57 PSRVIHIRKLPGDVTEGEVISLGLPFGKVTNLLMLKGKNQ 96
Score = 34 (17.0 bits), Expect = 2.8e-12, Sum P(2) = 2.8e-12
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 84 FGRVTNVLVLKGKNQVSLISGYRNRQSA 111
FG V ++ NQ + Y + SA
Sbjct: 207 FGTVLKIITFTKNNQFQALLQYADPVSA 234
>UNIPROTKB|F1PCJ7 [details] [associations]
symbol:PTBP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0051148 "negative regulation of muscle cell
differentiation" evidence=IEA] [GO:0048025 "negative regulation of
mRNA splicing, via spliceosome" evidence=IEA] [GO:0036002 "pre-mRNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0048025 GO:GO:0000381
GO:GO:0036002 TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508
OMA:SEECAQT GO:GO:0051148 EMBL:AAEX03012673
Ensembl:ENSCAFT00000031317 Uniprot:F1PCJ7
Length = 558
Score = 162 (62.1 bits), Expect = 2.8e-12, Sum P(2) = 2.8e-12
Identities = 29/40 (72%), Positives = 36/40 (90%)
Query: 29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQ 68
PSRVIHIR +P +VTE E+I LG+PFG+VTN+L+LKGKNQ
Sbjct: 58 PSRVIHIRKLPGDVTEGEVISLGLPFGKVTNLLMLKGKNQ 97
Score = 34 (17.0 bits), Expect = 2.8e-12, Sum P(2) = 2.8e-12
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 84 FGRVTNVLVLKGKNQVSLISGYRNRQSA 111
FG V ++ NQ + Y + SA
Sbjct: 208 FGTVLKIITFTKNNQFQALLQYADPVSA 235
>UNIPROTKB|P26599 [details] [associations]
symbol:PTBP1 "Polypyrimidine tract-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IDA] [GO:0051148 "negative regulation of
muscle cell differentiation" evidence=IDA] [GO:0036002 "pre-mRNA
binding" evidence=IDA] [GO:0033119 "negative regulation of RNA
splicing" evidence=IDA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=IDA] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0005730 "nucleolus" evidence=TAS] [GO:0008187 "poly-pyrimidine
tract binding" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR006536 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0000398 EMBL:CH471242
GO:GO:0048025 GO:GO:0000381 GO:GO:0008187 GO:GO:0036002
TIGRFAMs:TIGR01649 CTD:5725 HOVERGEN:HBG069548 KO:K13218
OMA:SEECAQT GO:GO:0051148 EMBL:X62006 EMBL:X65371 EMBL:X65372
EMBL:X60648 EMBL:X66975 EMBL:BT006819 EMBL:AC006273 EMBL:BC002397
EMBL:BC004383 EMBL:BC013694 IPI:IPI00179964 IPI:IPI00183626
IPI:IPI00334175 PIR:S23016 RefSeq:NP_002810.1 RefSeq:NP_114367.1
RefSeq:NP_114368.1 UniGene:Hs.172550 PDB:1QM9 PDB:1SJQ PDB:1SJR
PDB:2AD9 PDB:2ADB PDB:2ADC PDB:2EVZ PDB:3ZZY PDB:3ZZZ PDBsum:1QM9
PDBsum:1SJQ PDBsum:1SJR PDBsum:2AD9 PDBsum:2ADB PDBsum:2ADC
PDBsum:2EVZ PDBsum:3ZZY PDBsum:3ZZZ ProteinModelPortal:P26599
SMR:P26599 IntAct:P26599 MINT:MINT-1348690 STRING:P26599
PhosphoSite:P26599 DMDM:131528 SWISS-2DPAGE:P26599 PaxDb:P26599
PRIDE:P26599 DNASU:5725 Ensembl:ENST00000349038
Ensembl:ENST00000356948 Ensembl:ENST00000394601 GeneID:5725
KEGG:hsa:5725 UCSC:uc002lpq.2 UCSC:uc002lpr.2 GeneCards:GC19P000797
H-InvDB:HIX0137476 HGNC:HGNC:9583 HPA:CAB013507 MIM:600693
neXtProt:NX_P26599 PharmGKB:PA33934 eggNOG:NOG263741
HOGENOM:HOG000231699 ChEMBL:CHEMBL1293230 EvolutionaryTrace:P26599
GenomeRNAi:5725 NextBio:22252 PMAP-CutDB:P26599 ArrayExpress:P26599
Bgee:P26599 CleanEx:HS_PTBP1 Genevestigator:P26599
GermOnline:ENSG00000011304 Uniprot:P26599
Length = 531
Score = 159 (61.0 bits), Expect = 5.0e-12, Sum P(2) = 5.0e-12
Identities = 29/40 (72%), Positives = 36/40 (90%)
Query: 29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQ 68
PSRVIHIR +P +VTE E+I LG+PFG+VTN+L+LKGKNQ
Sbjct: 57 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQ 96
Score = 34 (17.0 bits), Expect = 5.0e-12, Sum P(2) = 5.0e-12
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 84 FGRVTNVLVLKGKNQVSLISGYRNRQSA 111
FG V ++ NQ + Y + SA
Sbjct: 207 FGTVLKIITFTKNNQFQALLQYADPVSA 234
>ZFIN|ZDB-GENE-060810-49 [details] [associations]
symbol:ptbp2b "polypyrimidine tract binding protein
2b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-060810-49 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508 KO:K14948
HOVERGEN:HBG069548 eggNOG:NOG263741 HOGENOM:HOG000231699
OrthoDB:EOG4GMTXQ EMBL:BX005269 IPI:IPI00855280
RefSeq:NP_001093477.1 UniGene:Dr.75530 SMR:A5PM68
Ensembl:ENSDART00000038648 GeneID:562434 KEGG:dre:562434 CTD:562434
OMA:YTAVTPQ NextBio:20884409 Uniprot:A5PM68
Length = 538
Score = 171 (65.3 bits), Expect = 5.1e-12, P = 5.1e-12
Identities = 31/43 (72%), Positives = 38/43 (88%)
Query: 26 DFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQ 68
D PSRVIHIR +PNEV+E E+I LG+PFG+VTN+L+LKGKNQ
Sbjct: 49 DSPPSRVIHIRKLPNEVSETEVIALGLPFGKVTNILMLKGKNQ 91
>UNIPROTKB|K7ELW5 [details] [associations]
symbol:PTBP1 "Polypyrimidine tract-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 EMBL:AC006273 HGNC:HGNC:9583
Ensembl:ENST00000585535 Uniprot:K7ELW5
Length = 233
Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 29/40 (72%), Positives = 36/40 (90%)
Query: 29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQ 68
PSRVIHIR +P +VTE E+I LG+PFG+VTN+L+LKGKNQ
Sbjct: 57 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQ 96
>FB|FBgn0011224 [details] [associations]
symbol:heph "hephaestus" species:7227 "Drosophila
melanogaster" [GO:0007286 "spermatid development" evidence=IMP]
[GO:0008187 "poly-pyrimidine tract binding" evidence=ISS;NAS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISS] [GO:0007219 "Notch
signaling pathway" evidence=IMP] [GO:0008586 "imaginal disc-derived
wing vein morphogenesis" evidence=IMP] [GO:0008587 "imaginal
disc-derived wing margin morphogenesis" evidence=IMP] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0007319 "negative regulation of oskar mRNA
translation" evidence=IMP] [GO:0008103 "oocyte microtubule
cytoskeleton polarization" evidence=IMP] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0000900 "translation repressor activity,
nucleic acid binding" evidence=IMP] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:2001020 "regulation of response to DNA damage stimulus"
evidence=IGI] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] [GO:0007291 "sperm individualization" evidence=IMP]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0005634
GO:GO:0005737 GO:GO:0008103 GO:GO:0000166 GO:GO:0008586
Gene3D:3.30.70.330 GO:GO:0007291 GO:GO:0003730 GO:GO:0030529
GO:GO:0000398 GO:GO:0000900 GO:GO:0008587 GO:GO:0007319
GO:GO:0008187 CTD:9843 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 KO:K14948 UniGene:Dm.19417
GeneID:48571 KEGG:dme:Dmel_CG31000 FlyBase:FBgn0011224 ChiTaRS:HEPH
GenomeRNAi:48571 NextBio:839481 HSSP:P26599 EMBL:AY052367
EMBL:BT030984 RefSeq:NP_001163787.1 RefSeq:NP_001163790.1
RefSeq:NP_788780.1 SMR:Q95UI6 STRING:Q95UI6
EnsemblMetazoa:FBtr0085881 EnsemblMetazoa:FBtr0300263
EnsemblMetazoa:FBtr0300266 UCSC:CG31000-RH InParanoid:Q95UI6
Uniprot:Q95UI6
Length = 789
Score = 169 (64.5 bits), Expect = 1.5e-11, P = 1.5e-11
Identities = 33/41 (80%), Positives = 37/41 (90%)
Query: 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQ 68
K S+VIH+RNIPNE EA++I LGIPFGRVTNVLVLKGKNQ
Sbjct: 252 KASKVIHLRNIPNESGEADVIALGIPFGRVTNVLVLKGKNQ 292
>ZFIN|ZDB-GENE-030131-9796 [details] [associations]
symbol:ptbp1b "polypyrimidine tract binding
protein 1b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-9796
GO:GO:0005634 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01649 HOVERGEN:HBG069548
eggNOG:NOG263741 HOGENOM:HOG000231699 EMBL:BC091854 IPI:IPI00613822
UniGene:Dr.75263 ProteinModelPortal:Q58EL3 STRING:Q58EL3
InParanoid:Q58EL3 ArrayExpress:Q58EL3 Bgee:Q58EL3 Uniprot:Q58EL3
Length = 586
Score = 165 (63.1 bits), Expect = 2.6e-11, P = 2.6e-11
Identities = 29/45 (64%), Positives = 39/45 (86%)
Query: 24 KSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQ 68
+S PSRVIH+R +PN++ EAE+I LG+PFG+VTN+L+LKGKNQ
Sbjct: 86 RSPAVPSRVIHVRKLPNDINEAEVIALGLPFGKVTNLLMLKGKNQ 130
>UNIPROTKB|O95758 [details] [associations]
symbol:PTBP3 "Polypyrimidine tract-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0043249 "erythrocyte maturation"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0045595 "regulation of cell
differentiation" evidence=IEA] [GO:0033119 "negative regulation of
RNA splicing" evidence=IDA] [GO:0009653 "anatomical structure
morphogenesis" evidence=TAS] InterPro:IPR000504 InterPro:IPR006536
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0045595 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471105
GO:GO:0033119 GO:GO:0009653 GO:GO:0043249 TIGRFAMs:TIGR01649
HOVERGEN:HBG069548 eggNOG:NOG263741 HOGENOM:HOG000231699
OrthoDB:EOG4GMTXQ EMBL:AK001685 EMBL:AK302558 EMBL:CR749471
EMBL:AL158824 EMBL:AL359073 EMBL:BC039896 EMBL:BC044585
EMBL:BI463123 EMBL:AB023967 IPI:IPI00159072 IPI:IPI00384710
IPI:IPI00470879 IPI:IPI00640632 IPI:IPI00915287 IPI:IPI00915299
IPI:IPI00915400 RefSeq:NP_001157260.1 RefSeq:NP_001157262.1
RefSeq:NP_001231826.1 RefSeq:NP_001231827.1 RefSeq:NP_005147.3
UniGene:Hs.269988 ProteinModelPortal:O95758 SMR:O95758
IntAct:O95758 STRING:O95758 PhosphoSite:O95758 PaxDb:O95758
PRIDE:O95758 Ensembl:ENST00000210227 Ensembl:ENST00000334318
Ensembl:ENST00000343327 Ensembl:ENST00000374255
Ensembl:ENST00000374257 Ensembl:ENST00000458258 GeneID:9991
KEGG:hsa:9991 UCSC:uc004bfv.3 UCSC:uc004bfw.3 UCSC:uc004bfx.3
UCSC:uc004bfz.3 CTD:9991 GeneCards:GC09M114981 H-InvDB:HIX0008290
HGNC:HGNC:10253 MIM:607527 neXtProt:NX_O95758 PharmGKB:PA34625
OMA:PPSVTMD GenomeRNAi:9991 NextBio:37743 ArrayExpress:O95758
Bgee:O95758 CleanEx:HS_ROD1 Genevestigator:O95758
GermOnline:ENSG00000119314 Uniprot:O95758
Length = 552
Score = 164 (62.8 bits), Expect = 3.0e-11, P = 3.0e-11
Identities = 31/50 (62%), Positives = 40/50 (80%)
Query: 19 KLDRQKSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQ 68
K R + PSRV+H+R IP +VTEAEII LG+PFG+VTN+L+LKGK+Q
Sbjct: 47 KFKRDRPPCSPSRVLHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKGKSQ 96
>UNIPROTKB|F1PXP9 [details] [associations]
symbol:PTBP3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508 OMA:PPSVTMD
EMBL:AAEX03008069 EMBL:AAEX03008070 Ensembl:ENSCAFT00000004839
Uniprot:F1PXP9
Length = 521
Score = 160 (61.4 bits), Expect = 7.5e-11, P = 7.5e-11
Identities = 28/40 (70%), Positives = 38/40 (95%)
Query: 29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQ 68
PSRV+H+R IP++VTEAE+I LG+PFG+VTN+L+LKGK+Q
Sbjct: 26 PSRVLHLRKIPSDVTEAEVISLGLPFGKVTNLLMLKGKSQ 65
>UNIPROTKB|F1MPG6 [details] [associations]
symbol:F1MPG6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0033119 "negative regulation of RNA splicing"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0033119 TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508
OMA:PPSVTMD EMBL:DAAA02024547 IPI:IPI00700660
Ensembl:ENSBTAT00000022272 Uniprot:F1MPG6
Length = 523
Score = 160 (61.4 bits), Expect = 7.5e-11, P = 7.5e-11
Identities = 28/40 (70%), Positives = 38/40 (95%)
Query: 29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQ 68
PSRV+H+R IP++VTEAE+I LG+PFG+VTN+L+LKGK+Q
Sbjct: 26 PSRVLHLRKIPSDVTEAEVISLGLPFGKVTNLLMLKGKSQ 65
>UNIPROTKB|Q06A95 [details] [associations]
symbol:ROD1 "ROD1" species:9823 "Sus scrofa" [GO:0033119
"negative regulation of RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006536
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0033119 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 HOVERGEN:HBG069548 eggNOG:NOG263741
HOGENOM:HOG000231699 OrthoDB:EOG4GMTXQ OMA:PPSVTMD EMBL:CU234201
EMBL:DQ972969 RefSeq:NP_001070683.1 UniGene:Ssc.16910 SMR:Q06A95
Ensembl:ENSSSCT00000006012 GeneID:768100 KEGG:ssc:768100
CTD:100701891 Uniprot:Q06A95
Length = 523
Score = 160 (61.4 bits), Expect = 7.5e-11, P = 7.5e-11
Identities = 28/40 (70%), Positives = 38/40 (95%)
Query: 29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQ 68
PSRV+H+R IP++VTEAE+I LG+PFG+VTN+L+LKGK+Q
Sbjct: 26 PSRVLHLRKIPSDVTEAEVISLGLPFGKVTNLLMLKGKSQ 65
>UNIPROTKB|E1C5J2 [details] [associations]
symbol:E1C5J2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 EMBL:AADN02057711 EMBL:AADN02057712
EMBL:AADN02057713 IPI:IPI00822931 Ensembl:ENSGALT00000037624
ArrayExpress:E1C5J2 Uniprot:E1C5J2
Length = 288
Score = 153 (58.9 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 26/40 (65%), Positives = 36/40 (90%)
Query: 29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQ 68
PSRV+H+R IP+ TEA++I LG+PFG+VTNVL+L+GK+Q
Sbjct: 40 PSRVLHLRQIPDNATEADVISLGLPFGKVTNVLILRGKSQ 79
>MGI|MGI:1923334 [details] [associations]
symbol:Ptbp3 "polypyrimidine tract binding protein 3"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0033119 "negative regulation of
RNA splicing" evidence=ISO] [GO:0043249 "erythrocyte maturation"
evidence=IEA] [GO:0045595 "regulation of cell differentiation"
evidence=ISO] InterPro:IPR000504 InterPro:IPR006536
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1923334
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043249 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 HOVERGEN:HBG069548 eggNOG:NOG263741
HOGENOM:HOG000231699 OrthoDB:EOG4GMTXQ CTD:9991 EMBL:AK033732
EMBL:AK088560 EMBL:AL824704 EMBL:BC006638 EMBL:BC057641
IPI:IPI00221840 IPI:IPI00975110 RefSeq:NP_659153.2
RefSeq:NP_835458.1 UniGene:Mm.331640 ProteinModelPortal:Q8BHD7
SMR:Q8BHD7 STRING:Q8BHD7 PhosphoSite:Q8BHD7 PaxDb:Q8BHD7
PRIDE:Q8BHD7 Ensembl:ENSMUST00000030076 Ensembl:ENSMUST00000148331
Ensembl:ENSMUST00000172768 GeneID:230257 KEGG:mmu:230257
UCSC:uc008szw.2 UCSC:uc008szx.2 InParanoid:A2ANH0 ChiTaRS:PTBP3
NextBio:379861 Bgee:Q8BHD7 CleanEx:MM_ROD1 Genevestigator:Q8BHD7
GermOnline:ENSMUSG00000028382 Uniprot:Q8BHD7
Length = 523
Score = 156 (60.0 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 28/40 (70%), Positives = 37/40 (92%)
Query: 29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQ 68
PSRV+H+R IP +VTEAE+I LG+PFG+VTN+L+LKGK+Q
Sbjct: 28 PSRVLHLRKIPCDVTEAEVISLGLPFGKVTNLLMLKGKSQ 67
>RGD|621671 [details] [associations]
symbol:Ptbp3 "polypyrimidine tract binding protein 3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=NAS] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0033119 "negative
regulation of RNA splicing" evidence=IEA;ISO] [GO:0043249
"erythrocyte maturation" evidence=IEA] [GO:0045595 "regulation of
cell differentiation" evidence=IMP] InterPro:IPR000504
InterPro:IPR006536 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
RGD:621671 GO:GO:0005634 GO:GO:0045595 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0033119
GO:GO:0043249 TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508
HOVERGEN:HBG069548 eggNOG:NOG263741 HOGENOM:HOG000231699
OrthoDB:EOG4GMTXQ CTD:9991 OMA:PPSVTMD EMBL:AB023966
IPI:IPI00326775 RefSeq:NP_112636.1 UniGene:Rn.162818
ProteinModelPortal:Q9Z118 SMR:Q9Z118 STRING:Q9Z118 PRIDE:Q9Z118
Ensembl:ENSRNOT00000022107 GeneID:83515 KEGG:rno:83515
UCSC:RGD:621671 InParanoid:Q9Z118 NextBio:615974
Genevestigator:Q9Z118 GermOnline:ENSRNOG00000016334 Uniprot:Q9Z118
Length = 523
Score = 156 (60.0 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 28/40 (70%), Positives = 37/40 (92%)
Query: 29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQ 68
PSRV+H+R IP +VTEAE+I LG+PFG+VTN+L+LKGK+Q
Sbjct: 28 PSRVLHLRKIPCDVTEAEVISLGLPFGKVTNLLMLKGKSQ 67
>UNIPROTKB|F1ND44 [details] [associations]
symbol:F1ND44 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0033119 "negative regulation of RNA splicing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0033119
TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508 EMBL:AADN02057711
EMBL:AADN02057712 EMBL:AADN02057713 IPI:IPI00604250
Ensembl:ENSGALT00000025267 OMA:FLEMASI ArrayExpress:F1ND44
Uniprot:F1ND44
Length = 364
Score = 153 (58.9 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 26/40 (65%), Positives = 36/40 (90%)
Query: 29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQ 68
PSRV+H+R IP+ TEA++I LG+PFG+VTNVL+L+GK+Q
Sbjct: 56 PSRVLHLRQIPDNATEADVISLGLPFGKVTNVLILRGKSQ 95
>UNIPROTKB|F1LY02 [details] [associations]
symbol:F1LY02 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00550000074508
IPI:IPI00778797 Ensembl:ENSRNOT00000036047 Uniprot:F1LY02
Length = 494
Score = 128 (50.1 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 26/46 (56%), Positives = 35/46 (76%)
Query: 24 KSDFK-PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQ 68
K D + PSRVIH+ + ++VTE EII LG+ FG+ TN+L+LK KNQ
Sbjct: 45 KGDNRVPSRVIHVLKLHSDVTEGEIISLGLSFGKATNLLMLKRKNQ 90
>RGD|727953 [details] [associations]
symbol:Smptb "polypyrimidine tract-binding protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000380 "alternative mRNA splicing, via spliceosome"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] InterPro:IPR000504 InterPro:IPR006536
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 RGD:727953
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0000380 TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508
HOVERGEN:HBG069548 eggNOG:NOG263741 HOGENOM:HOG000231699
OrthoDB:EOG4GMTXQ HSSP:P26599 EMBL:CH474078 EMBL:AY223520
IPI:IPI00331913 RefSeq:NP_877970.1 UniGene:Rn.97598 SMR:Q80XZ1
Ensembl:ENSRNOT00000014611 GeneID:302879 KEGG:rno:302879
UCSC:RGD:727953 CTD:302879 NextBio:650282 Genevestigator:Q80XZ1
Uniprot:Q80XZ1
Length = 588
Score = 120 (47.3 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 22/40 (55%), Positives = 31/40 (77%)
Query: 29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQ 68
PSR++HI +P+ VTE EI+ L +PFG V+N+L L+ KNQ
Sbjct: 27 PSRLVHILRLPSCVTEGEILCLALPFGEVSNLLFLRAKNQ 66
>DICTYBASE|DDB_G0284321 [details] [associations]
symbol:DDB_G0284321 "putative polypyrimidine tract
binding protein (PTBP1)" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0284321 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000064 eggNOG:NOG263741 OMA:DATENEI
RefSeq:XP_638677.1 ProteinModelPortal:Q54PW8 SMR:Q54PW8
EnsemblProtists:DDB0233645 GeneID:8624506 KEGG:ddi:DDB_G0284321
InParanoid:Q54PW8 Uniprot:Q54PW8
Length = 892
Score = 119 (46.9 bits), Expect = 4.0e-06, P = 4.0e-06
Identities = 20/40 (50%), Positives = 32/40 (80%)
Query: 29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQ 68
PS+VIH+RN+P++ T+ EI + PFG + N++++KGKNQ
Sbjct: 311 PSKVIHLRNLPSDCTDQEIKSMVEPFGVIENLIIIKGKNQ 350
>UNIPROTKB|F1NIY4 [details] [associations]
symbol:RBM20 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00650000093206
EMBL:AADN02030890 IPI:IPI00586108 Ensembl:ENSGALT00000014156
OMA:RTAKNEX Uniprot:F1NIY4
Length = 386
Score = 111 (44.1 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 20/39 (51%), Positives = 30/39 (76%)
Query: 31 RVIHIRNIPN-EVTEAEIIHLGIPFGRVTNVLVLKGKNQ 68
RV+HI N+P TE ++I+LG+PFG+VTN +++K NQ
Sbjct: 10 RVVHICNLPEGSCTENDVINLGLPFGKVTNYILMKSTNQ 48
>WB|WBGene00004207 [details] [associations]
symbol:ptb-1 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR006536 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0000398 EMBL:Z36948 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 eggNOG:NOG263741 HOGENOM:HOG000231699
OMA:IKMHNHK PIR:A88299 PIR:T20381 RefSeq:NP_741041.1 HSSP:P26599
ProteinModelPortal:Q18999 SMR:Q18999 DIP:DIP-24857N IntAct:Q18999
MINT:MINT-1089938 STRING:Q18999 PaxDb:Q18999 PRIDE:Q18999
EnsemblMetazoa:D2089.4a GeneID:174647 KEGG:cel:CELE_D2089.4
UCSC:D2089.4a CTD:174647 WormBase:D2089.4a InParanoid:Q18999
NextBio:884900 ArrayExpress:Q18999 Uniprot:Q18999
Length = 615
Score = 112 (44.5 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 22/77 (28%), Positives = 41/77 (53%)
Query: 30 SRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQXXXXXXXXXXXXGIPFGRVTN 89
S+V+H+RNIP ++ + E++ L I +G V+N ++LKGK+Q G
Sbjct: 120 SKVVHVRNIPPDLVDVELMQLCIQYGPVSNYMMLKGKSQAFVEYEEEASAAAFVSGMTAV 179
Query: 90 VLVLKGKNQVSLISGYR 106
+ ++G+ + S +R
Sbjct: 180 PIQIRGRTLFAQYSTHR 196
>TAIR|locus:2163746 [details] [associations]
symbol:PTB2 "AT5G53180" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0009846 "pollen germination" evidence=IGI] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IDA] [GO:0006417
"regulation of translation" evidence=IEP] [GO:0043484 "regulation
of RNA splicing" evidence=IDA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IMP]
[GO:0009845 "seed germination" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006417 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043484 GO:GO:0000932 GO:GO:0009846 EMBL:AB025622
HOGENOM:HOG000238077 KO:K14948 EMBL:BT015760 EMBL:BT020199
IPI:IPI00533493 RefSeq:NP_200130.1 UniGene:At.43107
ProteinModelPortal:Q9FGL9 SMR:Q9FGL9 IntAct:Q9FGL9 STRING:Q9FGL9
PaxDb:Q9FGL9 PRIDE:Q9FGL9 EnsemblPlants:AT5G53180.1 GeneID:835399
KEGG:ath:AT5G53180 GeneFarm:5075 TAIR:At5g53180 eggNOG:NOG263807
InParanoid:Q9FGL9 OMA:KKMEPES PhylomeDB:Q9FGL9
ProtClustDB:CLSN2720458 Genevestigator:Q9FGL9 GermOnline:AT5G53180
Uniprot:Q9FGL9
Length = 429
Score = 108 (43.1 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 21/40 (52%), Positives = 27/40 (67%)
Query: 29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQ 68
PS+V+H+RN+P E TE E+I LG PFG V N G N+
Sbjct: 16 PSKVLHLRNLPWECTEEELIELGKPFGTVVNTKCNVGANR 55
>UNIPROTKB|D3ZZG7 [details] [associations]
symbol:Rbm20 "RNA-binding protein 20" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR015880 PROSITE:PS50102 SMART:SM00355 SMART:SM00360
RGD:1307427 GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0005622 OrthoDB:EOG4TB4CN IPI:IPI00778571
Ensembl:ENSRNOT00000054684 ArrayExpress:D3ZZG7 Uniprot:D3ZZG7
Length = 1094
Score = 111 (44.1 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 20/39 (51%), Positives = 30/39 (76%)
Query: 31 RVIHIRNIPN-EVTEAEIIHLGIPFGRVTNVLVLKGKNQ 68
RV+HI N+P TE ++I+LG+PFG+VTN +++K NQ
Sbjct: 482 RVVHICNLPEGSCTENDVINLGLPFGKVTNYILMKSTNQ 520
>UNIPROTKB|I3LEJ3 [details] [associations]
symbol:RBM20 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR000690 InterPro:IPR003604
InterPro:IPR012677 PROSITE:PS50102 PROSITE:PS50171 SMART:SM00360
SMART:SM00451 GO:GO:0005634 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00650000093206
EMBL:CU463946 Ensembl:ENSSSCT00000025671 Uniprot:I3LEJ3
Length = 1160
Score = 111 (44.1 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 20/39 (51%), Positives = 30/39 (76%)
Query: 31 RVIHIRNIPN-EVTEAEIIHLGIPFGRVTNVLVLKGKNQ 68
RV+HI N+P TE ++I+LG+PFG+VTN +++K NQ
Sbjct: 472 RVVHICNLPEGSCTENDVINLGLPFGKVTNYILMKSTNQ 510
>UNIPROTKB|F1S5L8 [details] [associations]
symbol:RBM20 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0033120 "positive regulation of RNA splicing"
evidence=IEA] [GO:0007507 "heart development" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR000690 InterPro:IPR003604 InterPro:IPR012677
PROSITE:PS50102 PROSITE:PS50171 SMART:SM00360 SMART:SM00451
GO:GO:0005634 GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00650000093206 OMA:PNSTAVY
EMBL:CU463946 Ensembl:ENSSSCT00000011622 Uniprot:F1S5L8
Length = 1169
Score = 111 (44.1 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 20/39 (51%), Positives = 30/39 (76%)
Query: 31 RVIHIRNIPN-EVTEAEIIHLGIPFGRVTNVLVLKGKNQ 68
RV+HI N+P TE ++I+LG+PFG+VTN +++K NQ
Sbjct: 466 RVVHICNLPEGSCTENDVINLGLPFGKVTNYILMKSTNQ 504
>UNIPROTKB|F1PLE0 [details] [associations]
symbol:RBM20 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR000690 InterPro:IPR003604
InterPro:IPR012677 InterPro:IPR015880 PROSITE:PS50102
PROSITE:PS50171 SMART:SM00355 SMART:SM00360 SMART:SM00451
GO:GO:0005634 GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00650000093206 EMBL:AAEX03015527
EMBL:AAEX03015526 Ensembl:ENSCAFT00000017152 Uniprot:F1PLE0
Length = 1194
Score = 111 (44.1 bits), Expect = 4.0e-05, P = 4.0e-05
Identities = 20/39 (51%), Positives = 30/39 (76%)
Query: 31 RVIHIRNIPN-EVTEAEIIHLGIPFGRVTNVLVLKGKNQ 68
RV+HI N+P TE ++I+LG+PFG+VTN +++K NQ
Sbjct: 485 RVVHICNLPEGSCTENDVINLGLPFGKVTNYILMKSTNQ 523
>MGI|MGI:1920963 [details] [associations]
symbol:Rbm20 "RNA binding motif protein 20" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IDA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0007507 "heart development" evidence=ISO]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0033120 "positive regulation of RNA
splicing" evidence=ISO;IMP] InterPro:IPR000504 InterPro:IPR000690
InterPro:IPR003604 InterPro:IPR012677 InterPro:IPR015880
PROSITE:PS50102 SMART:SM00355 SMART:SM00360 SMART:SM00451
MGI:MGI:1920963 GO:GO:0005634 GO:GO:0007507 GO:GO:0008380
GO:GO:0000166 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0033120 GeneTree:ENSGT00650000093206 CTD:282996
eggNOG:NOG145655 HOGENOM:HOG000072583 HOVERGEN:HBG108397
OMA:PNSTAVY OrthoDB:EOG4TB4CN EMBL:AC117805 EMBL:AC121510
EMBL:AC137853 EMBL:AK142175 EMBL:BC038663 IPI:IPI00462208
RefSeq:NP_001164318.1 UniGene:Mm.313695 HSSP:Q9UKA9
ProteinModelPortal:Q3UQS8 STRING:Q3UQS8 PhosphoSite:Q3UQS8
PRIDE:Q3UQS8 Ensembl:ENSMUST00000164202 GeneID:73713 KEGG:mmu:73713
UCSC:uc008hwz.2 InParanoid:Q3UQS8 NextBio:338879
Genevestigator:Q3UQS8 Uniprot:Q3UQS8
Length = 1199
Score = 111 (44.1 bits), Expect = 4.0e-05, P = 4.0e-05
Identities = 20/39 (51%), Positives = 30/39 (76%)
Query: 31 RVIHIRNIPN-EVTEAEIIHLGIPFGRVTNVLVLKGKNQ 68
RV+HI N+P TE ++I+LG+PFG+VTN +++K NQ
Sbjct: 520 RVVHICNLPEGSCTENDVINLGLPFGKVTNYILMKSTNQ 558
>RGD|1307427 [details] [associations]
symbol:Rbm20 "RNA binding motif protein 20" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISO;ISS] [GO:0005634 "nucleus"
evidence=IEA;ISO;ISS] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0007507 "heart development" evidence=ISO;IMP] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0033120 "positive regulation of RNA splicing" evidence=ISO;IMP]
InterPro:IPR000504 InterPro:IPR000690 InterPro:IPR003604
InterPro:IPR012677 InterPro:IPR015880 PROSITE:PS50102
PROSITE:PS50171 SMART:SM00355 SMART:SM00360 SMART:SM00451
RGD:1307427 GO:GO:0005634 GO:GO:0007507 GO:GO:0008380 GO:GO:0000166
GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0033120 GeneTree:ENSGT00650000093206 CTD:282996
eggNOG:NOG145655 HOGENOM:HOG000072583 EMBL:EU562301 IPI:IPI00782698
RefSeq:NP_001101081.2 UniGene:Rn.21596 Ensembl:ENSRNOT00000054685
GeneID:309544 KEGG:rno:309544 UCSC:RGD:1307427 NextBio:660952
ArrayExpress:E9PT37 Genevestigator:C1IEE3 Uniprot:E9PT37
Length = 1207
Score = 111 (44.1 bits), Expect = 4.0e-05, P = 4.0e-05
Identities = 20/39 (51%), Positives = 30/39 (76%)
Query: 31 RVIHIRNIPN-EVTEAEIIHLGIPFGRVTNVLVLKGKNQ 68
RV+HI N+P TE ++I+LG+PFG+VTN +++K NQ
Sbjct: 521 RVVHICNLPEGSCTENDVINLGLPFGKVTNYILMKSTNQ 559
>UNIPROTKB|F1MF93 [details] [associations]
symbol:RBM20 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0033120 "positive regulation of RNA splicing"
evidence=IEA] [GO:0007507 "heart development" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR000690 InterPro:IPR003604 InterPro:IPR012677
InterPro:IPR015880 PROSITE:PS50102 PROSITE:PS50171 SMART:SM00355
SMART:SM00360 SMART:SM00451 GO:GO:0005634 GO:GO:0000166
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00650000093206 OMA:PNSTAVY EMBL:DAAA02059210
EMBL:DAAA02059205 EMBL:DAAA02059206 EMBL:DAAA02059207
EMBL:DAAA02059208 EMBL:DAAA02059209 IPI:IPI00843202
UniGene:Bt.92105 Ensembl:ENSBTAT00000046225 NextBio:20874165
Uniprot:F1MF93
Length = 1210
Score = 111 (44.1 bits), Expect = 4.0e-05, P = 4.0e-05
Identities = 20/39 (51%), Positives = 30/39 (76%)
Query: 31 RVIHIRNIPN-EVTEAEIIHLGIPFGRVTNVLVLKGKNQ 68
RV+HI N+P TE ++I+LG+PFG+VTN +++K NQ
Sbjct: 518 RVVHICNLPEGSCTENDVINLGLPFGKVTNYILMKSTNQ 556
>UNIPROTKB|Q5T481 [details] [associations]
symbol:RBM20 "RNA-binding protein 20" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0007507
"heart development" evidence=IMP] [GO:0033120 "positive regulation
of RNA splicing" evidence=IMP] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
InterPro:IPR000504 InterPro:IPR000690 InterPro:IPR003604
InterPro:IPR012677 InterPro:IPR015880 PROSITE:PS50102
PROSITE:PS50171 SMART:SM00355 SMART:SM00360 SMART:SM00451
GO:GO:0005634 GO:GO:0007507 GO:GO:0008380 GO:GO:0000166
GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
Orphanet:154 GO:GO:0033120 EMBL:AL136368 EMBL:EU822950
EMBL:AL359260 IPI:IPI00552787 RefSeq:NP_001127835.1
UniGene:Hs.116630 ProteinModelPortal:Q5T481 SMR:Q5T481
STRING:Q5T481 PhosphoSite:Q5T481 DMDM:182676591 PaxDb:Q5T481
PRIDE:Q5T481 Ensembl:ENST00000369519 GeneID:282996 KEGG:hsa:282996
UCSC:uc001kzf.2 CTD:282996 GeneCards:GC10P112395 HGNC:HGNC:27424
HPA:HPA035806 MIM:613171 MIM:613172 neXtProt:NX_Q5T481
PharmGKB:PA134934622 eggNOG:NOG145655 HOGENOM:HOG000072583
HOVERGEN:HBG108397 InParanoid:Q5T481 OMA:PNSTAVY OrthoDB:EOG4TB4CN
GenomeRNAi:282996 NextBio:93561 ArrayExpress:Q5T481 Bgee:Q5T481
CleanEx:HS_RBM20 Genevestigator:Q5T481 Uniprot:Q5T481
Length = 1227
Score = 111 (44.1 bits), Expect = 4.1e-05, P = 4.1e-05
Identities = 20/39 (51%), Positives = 30/39 (76%)
Query: 31 RVIHIRNIPN-EVTEAEIIHLGIPFGRVTNVLVLKGKNQ 68
RV+HI N+P TE ++I+LG+PFG+VTN +++K NQ
Sbjct: 518 RVVHICNLPEGSCTENDVINLGLPFGKVTNYILMKSTNQ 556
>UNIPROTKB|F1PXN8 [details] [associations]
symbol:RBM20 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR000690 InterPro:IPR003604
InterPro:IPR012677 InterPro:IPR015880 PROSITE:PS50102
PROSITE:PS50171 SMART:SM00355 SMART:SM00360 SMART:SM00451
GO:GO:0005634 GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00650000093206 OMA:PNSTAVY
EMBL:AAEX03015527 EMBL:AAEX03015526 Ensembl:ENSCAFT00000017780
Uniprot:F1PXN8
Length = 1229
Score = 111 (44.1 bits), Expect = 4.1e-05, P = 4.1e-05
Identities = 20/39 (51%), Positives = 30/39 (76%)
Query: 31 RVIHIRNIPN-EVTEAEIIHLGIPFGRVTNVLVLKGKNQ 68
RV+HI N+P TE ++I+LG+PFG+VTN +++K NQ
Sbjct: 521 RVVHICNLPEGSCTENDVINLGLPFGKVTNYILMKSTNQ 559
>TAIR|locus:2018630 [details] [associations]
symbol:PTB3 "polypyrimidine tract-binding protein 3"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM;IEA;IDA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0006417 "regulation of translation" evidence=IEP] [GO:0043484
"regulation of RNA splicing" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0006417 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043484 GO:GO:0000932 EMBL:AC005687 KO:K14948
eggNOG:NOG263741 HOGENOM:HOG000231699 EMBL:BT014899 EMBL:BT015028
IPI:IPI00544143 RefSeq:NP_001077672.1 RefSeq:NP_175010.2
UniGene:At.22472 ProteinModelPortal:Q6ICX4 SMR:Q6ICX4 STRING:Q6ICX4
PaxDb:Q6ICX4 PRIDE:Q6ICX4 EnsemblPlants:AT1G43190.1
EnsemblPlants:AT1G43190.2 GeneID:840918 KEGG:ath:AT1G43190
GeneFarm:5076 TAIR:At1g43190 InParanoid:Q6ICX4 OMA:IKMHNHK
PhylomeDB:Q6ICX4 ProtClustDB:CLSN2690441 Genevestigator:Q6ICX4
GermOnline:AT1G43190 Uniprot:Q6ICX4
Length = 432
Score = 103 (41.3 bits), Expect = 7.9e-05, P = 7.9e-05
Identities = 22/70 (31%), Positives = 41/70 (58%)
Query: 30 SRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQXXXXXXXXXXX-XGIPFGRVT 88
S+V+H+RN+ +E++E +++ L PFG +T +++L+ KNQ + F T
Sbjct: 5 SKVVHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVSSAVSALQF--FT 62
Query: 89 NVL-VLKGKN 97
NV ++G+N
Sbjct: 63 NVQPTIRGRN 72
>DICTYBASE|DDB_G0278105 [details] [associations]
symbol:DDB_G0278105 "heterogeneous nuclear
ribonucleoprotein L-like protein" species:44689 "Dictyostelium
discoideum" [GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0278105
GO:GO:0005634 GO:GO:0000166 EMBL:AAFI02000023 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG326285 KO:K13159
TIGRFAMs:TIGR01649 RefSeq:XP_642125.1 ProteinModelPortal:Q54YS7
EnsemblProtists:DDB0233648 GeneID:8621334 KEGG:ddi:DDB_G0278105
InParanoid:Q54YS7 OMA:VIRIVIF ProtClustDB:CLSZ2846835
Uniprot:Q54YS7
Length = 530
Score = 84 (34.6 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 19/53 (35%), Positives = 33/53 (62%)
Query: 12 LVMVVQAKLDRQKSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK 64
L + ++ ++D+ +PS VIH R +P VT+A+I L PFG+V V +++
Sbjct: 27 LKLEIENEIDKS---IEPSPVIHCRGLPYSVTDADIHALLSPFGKVEAVCLMR 76
Score = 37 (18.1 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 7/29 (24%), Positives = 16/29 (55%)
Query: 83 PFGRVTNVLVLKGKNQVSLISGYRNRQSA 111
P+GRV +++ + K+ + + + SA
Sbjct: 159 PYGRVIRIVIFQKKSGLQTFVEFDSPYSA 187
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.322 0.139 0.386 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 118 106 0.00091 102 3 11 22 0.40 30
29 0.39 32
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 56
No. of states in DFA: 432 (46 KB)
Total size of DFA: 78 KB (2064 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:01
No. of threads or processors used: 24
Search cpu time: 8.49u 0.07s 8.56t Elapsed: 00:00:05
Total cpu time: 8.49u 0.07s 8.56t Elapsed: 00:00:12
Start: Thu Aug 15 17:02:33 2013 End: Thu Aug 15 17:02:45 2013