RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9171
(118 letters)
>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 89
Score = 43.1 bits (101), Expect = 2e-07
Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 23 QKSDFKPSRVIHIRNIPN-EVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLE 74
QK + RV+HI + + +++ L PFG ++N L+L N+ + +
Sbjct: 1 QKGRVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMA 53
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein
L-like {Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 39.0 bits (90), Expect = 1e-05
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 21 DRQKSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLE 74
K S V+H+R + V EA+++ FG + V+++ K Q L+ E
Sbjct: 8 SHHKVS--VSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFE 59
>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 35.5 bits (81), Expect = 2e-04
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 27 FKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTN 59
F PS +H+ NIP V+E ++ L G V
Sbjct: 7 FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVK 39
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 33.2 bits (75), Expect = 0.001
Identities = 8/33 (24%), Positives = 19/33 (57%)
Query: 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNV 60
+P++V++++N+ VTE +++ L F
Sbjct: 16 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGP 48
>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein
2, PTBP2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 33.3 bits (75), Expect = 0.002
Identities = 19/34 (55%), Positives = 24/34 (70%), Gaps = 2/34 (5%)
Query: 21 DRQKSDFKPSRVIHIRNIPNEVTEAEIIHLGIPF 54
D+ PSRV+HIR +P EVTE E+I LG+PF
Sbjct: 1 DKMDG--APSRVLHIRKLPGEVTETEVIALGLPF 32
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 33.1 bits (75), Expect = 0.002
Identities = 9/44 (20%), Positives = 18/44 (40%)
Query: 25 SDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQ 68
D R +++ N+ +VTE I+ L G + ++
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS 46
>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 33.3 bits (75), Expect = 0.002
Identities = 7/38 (18%), Positives = 13/38 (34%)
Query: 23 QKSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNV 60
D + +R +P ++ EI+ V N
Sbjct: 8 NSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNG 45
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 32.4 bits (73), Expect = 0.002
Identities = 6/39 (15%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 21 DRQKSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTN 59
+R D P+ + + + TE ++ + +G + +
Sbjct: 2 NRANPD--PNCCLGVFGLSLYTTERDLREVFSKYGPIAD 38
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14
{Human (Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 33.1 bits (75), Expect = 0.002
Identities = 8/32 (25%), Positives = 20/32 (62%)
Query: 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTN 59
+ +R+++IRN+P ++T E+ + +G +
Sbjct: 5 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQ 36
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 31.9 bits (72), Expect = 0.005
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTN 59
RV+++ + EV + + IPFG +T+
Sbjct: 3 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITD 34
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 97
Score = 32.0 bits (72), Expect = 0.005
Identities = 6/42 (14%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Query: 19 KLDRQKSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNV 60
K+ K+ P+ + + + + A + FG + +
Sbjct: 8 KIGYGKA--NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTI 47
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 31.6 bits (71), Expect = 0.008
Identities = 7/37 (18%), Positives = 15/37 (40%)
Query: 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK 64
+H+R +P TE +I + P + + +
Sbjct: 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIG 49
>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A
{Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 30.8 bits (69), Expect = 0.009
Identities = 7/44 (15%), Positives = 14/44 (31%)
Query: 33 IHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAE 76
++I N+ VT ++ L VL + +
Sbjct: 4 LYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLKSGYAFVDYPDQ 47
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 31.3 bits (70), Expect = 0.010
Identities = 5/40 (12%), Positives = 14/40 (35%)
Query: 25 SDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK 64
+ + I+++ + + VT ++ G V
Sbjct: 3 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTG 42
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19,
Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 31.1 bits (70), Expect = 0.010
Identities = 13/46 (28%), Positives = 20/46 (43%)
Query: 23 QKSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQ 68
Q + + I +RNIP + + EI L FG + V + K
Sbjct: 1 QVPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTG 46
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 91
Score = 30.8 bits (69), Expect = 0.011
Identities = 5/27 (18%), Positives = 13/27 (48%)
Query: 28 KPSRVIHIRNIPNEVTEAEIIHLGIPF 54
+P+ I+I N+ ++ + E+
Sbjct: 1 RPNHTIYINNLNEKIKKDELKKSLHAI 27
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 31.5 bits (70), Expect = 0.015
Identities = 6/31 (19%), Positives = 13/31 (41%)
Query: 30 SRVIHIRNIPNEVTEAEIIHLGIPFGRVTNV 60
R + I + E T+ + +G +T+
Sbjct: 6 LRKLFIGGLSFETTDESLRSHFEQWGTLTDC 36
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 30.3 bits (68), Expect = 0.015
Identities = 9/35 (25%), Positives = 17/35 (48%)
Query: 26 DFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNV 60
F + + N+P ++TE E+ L +G+ V
Sbjct: 4 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEV 38
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 30.5 bits (68), Expect = 0.019
Identities = 7/27 (25%), Positives = 10/27 (37%)
Query: 28 KPSRVIHIRNIPNEVTEAEIIHLGIPF 54
P + N+P +VTE I
Sbjct: 13 SPPYTAFLGNLPYDVTEESIKEFFRGL 39
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 29.9 bits (67), Expect = 0.023
Identities = 6/36 (16%), Positives = 16/36 (44%)
Query: 29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK 64
+ ++ I + +T+ + PFG++ + V
Sbjct: 17 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFP 52
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 29.7 bits (66), Expect = 0.030
Identities = 8/31 (25%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 24 KSDFKPSRVIHIRNIPNEVTEAEIIHLGIPF 54
K+D K +R ++I+ P + T +I
Sbjct: 1 KNDVK-NRSVYIKGFPTDATLDDIKEWLEDK 30
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 98
Score = 29.8 bits (66), Expect = 0.031
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 25 SDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNV 60
SD + + IRN+ + E + + FG + V
Sbjct: 3 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYV 38
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 29.6 bits (66), Expect = 0.032
Identities = 8/36 (22%), Positives = 17/36 (47%)
Query: 29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK 64
+I ++N+P V+ EI+ + + + LK
Sbjct: 8 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLK 43
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 29.6 bits (66), Expect = 0.033
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNV 60
S + + ++TE E+ +G V +V
Sbjct: 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDV 35
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 29.5 bits (66), Expect = 0.033
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 27 FKPSRVIHIRNIPNEVTEAEIIHLGIPFG 55
K S +++ N+ TE +I L G
Sbjct: 4 LKKSCTLYVGNLSFYTTEEQIYELFSKSG 32
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 29.6 bits (66), Expect = 0.034
Identities = 10/40 (25%), Positives = 16/40 (40%)
Query: 29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQ 68
P I + N+ VT + + FG V ++ NQ
Sbjct: 6 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQ 45
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 29.3 bits (65), Expect = 0.042
Identities = 6/28 (21%), Positives = 12/28 (42%)
Query: 30 SRVIHIRNIPNEVTEAEIIHLGIPFGRV 57
S I ++N+P + E+ L +
Sbjct: 5 SSGILVKNLPQDSNCQEVHDLLKDYDLK 32
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 29.2 bits (65), Expect = 0.043
Identities = 5/28 (17%), Positives = 13/28 (46%)
Query: 33 IHIRNIPNEVTEAEIIHLGIPFGRVTNV 60
+ + +P ++T+ E+ L G +
Sbjct: 5 LIVNYLPQDMTDRELYALFRAIGPINTC 32
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 28.8 bits (64), Expect = 0.054
Identities = 5/31 (16%), Positives = 14/31 (45%)
Query: 25 SDFKPSRVIHIRNIPNEVTEAEIIHLGIPFG 55
S+ +++ + +V+E + L + G
Sbjct: 4 SERNQDATVYVGGLDEKVSEPLLWELFLQAG 34
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 28.9 bits (64), Expect = 0.055
Identities = 8/37 (21%), Positives = 16/37 (43%)
Query: 31 RVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKN 67
R +++ NIP +TE ++ R+ + G
Sbjct: 2 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNP 38
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing
factor PRP24 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 81
Score = 28.6 bits (63), Expect = 0.056
Identities = 6/27 (22%), Positives = 9/27 (33%)
Query: 33 IHIRNIPNEVTEAEIIHLGIPFGRVTN 59
+ + N P T+ I L V
Sbjct: 4 LWMTNFPPSYTQRNIRDLLQDINVVAL 30
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 29.2 bits (65), Expect = 0.057
Identities = 7/52 (13%), Positives = 22/52 (42%)
Query: 16 VQAKLDRQKSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKN 67
V+ +D + + +R + + + ++ G+V +V ++ +N
Sbjct: 4 VREPVDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRN 55
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 28.3 bits (63), Expect = 0.069
Identities = 7/32 (21%), Positives = 18/32 (56%)
Query: 33 IHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK 64
+++ ++ +VTEA + P G + ++ V +
Sbjct: 3 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCR 34
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 88
Score = 28.5 bits (63), Expect = 0.073
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 23 QKSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFG 55
Q+S ++ + +I E E EI +G
Sbjct: 2 QRS--VEGWILFVTSIHEEAQEDEIQEKFCDYG 32
>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 111
Score = 28.8 bits (63), Expect = 0.079
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNV 60
+ VI +N+P AEI FG + V
Sbjct: 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRV 40
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear
ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 103
Score = 28.5 bits (63), Expect = 0.099
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 20 LDRQKSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFG 55
L+R+K + + R + I + E TE + + +G
Sbjct: 10 LERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWG 45
>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 83
Score = 27.9 bits (61), Expect = 0.10
Identities = 7/36 (19%), Positives = 17/36 (47%)
Query: 24 KSDFKPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTN 59
+++ P++++ + N+P E E + L F
Sbjct: 2 QTEQPPNQILFLTNLPEETNEMMLSMLFNQFPGFKE 37
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 28.1 bits (62), Expect = 0.11
Identities = 5/23 (21%), Positives = 13/23 (56%)
Query: 28 KPSRVIHIRNIPNEVTEAEIIHL 50
+ +R + +N+ +TE E+ +
Sbjct: 14 RAARTLLAKNLSFNITEDELKEV 36
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif,
single-stranded-interacting protein 1, RBMS1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 27.8 bits (61), Expect = 0.17
Identities = 11/39 (28%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 16 VQAKLDRQKSDFKPSRVIHIRNIPNEVTEAEIIHLGIPF 54
VQA++ +Q+ ++I N+P + E E+ ++ PF
Sbjct: 6 VQAQMAKQQEQ--DPTNLYISNLPLSMDEQELENMLKPF 42
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 27.2 bits (60), Expect = 0.17
Identities = 8/36 (22%), Positives = 17/36 (47%)
Query: 33 IHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQ 68
+ + N+ V++A+I L FG + V ++
Sbjct: 3 LLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSG 38
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 27.6 bits (61), Expect = 0.17
Identities = 4/27 (14%), Positives = 15/27 (55%)
Query: 33 IHIRNIPNEVTEAEIIHLGIPFGRVTN 59
+++ N+P +T+ ++ + +G +
Sbjct: 9 LYVTNLPRTITDDQLDTIFGKYGSIVQ 35
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 27.3 bits (60), Expect = 0.19
Identities = 6/40 (15%), Positives = 15/40 (37%)
Query: 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKN 67
+++++RN+ +E I V K ++
Sbjct: 6 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRD 45
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 27.3 bits (60), Expect = 0.19
Identities = 5/28 (17%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 23 QKSDFKPSRVIHIRNIPNEVTEAEIIHL 50
+++D + I + N+ + E ++ L
Sbjct: 3 RRAD--DNATIRVTNLSEDTRETDLQEL 28
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma
cruzi [TaxId: 5693]}
Length = 139
Score = 27.9 bits (61), Expect = 0.19
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 28 KPSRVIHIRNIPNEVTEAEIIHLGIPF 54
R + + IP V E ++ L +
Sbjct: 40 DVLRNLMVNYIPTTVDEVQLRQLFERY 66
>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 112
Score = 27.5 bits (60), Expect = 0.21
Identities = 5/33 (15%), Positives = 13/33 (39%)
Query: 22 RQKSDFKPSRVIHIRNIPNEVTEAEIIHLGIPF 54
R +S + ++++ +P E +I
Sbjct: 10 RSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKL 42
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich
1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 27.3 bits (60), Expect = 0.21
Identities = 5/32 (15%), Positives = 16/32 (50%)
Query: 29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNV 60
I++ N+P ++ +I + +G + ++
Sbjct: 13 NDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDI 44
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19,
Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 27.3 bits (60), Expect = 0.23
Identities = 8/36 (22%), Positives = 17/36 (47%)
Query: 33 IHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQ 68
+ I+N+ TE + + G + + + K KN+
Sbjct: 1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNK 36
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 26.6 bits (58), Expect = 0.34
Identities = 5/24 (20%), Positives = 10/24 (41%)
Query: 33 IHIRNIPNEVTEAEIIHLGIPFGR 56
+ + +P +T+ E L G
Sbjct: 5 LIVNYLPQNMTQEEFRSLFGSIGE 28
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 99
Score = 26.6 bits (58), Expect = 0.44
Identities = 6/32 (18%), Positives = 16/32 (50%)
Query: 29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNV 60
S + +RN+ +E ++ L +G ++ +
Sbjct: 7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLSEL 38
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 26.4 bits (58), Expect = 0.47
Identities = 7/38 (18%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 29 PSRVIHIRNIPNEVT-EAEIIHLGIPFGRVTNVLVLKG 65
+ + I N+ V ++++ + +G++ V KG
Sbjct: 14 MNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKG 51
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 103
Score = 26.7 bits (58), Expect = 0.48
Identities = 7/33 (21%), Positives = 12/33 (36%)
Query: 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNV 60
HI NIP +T+ +++ N
Sbjct: 6 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENA 38
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 26.6 bits (58), Expect = 0.48
Identities = 5/25 (20%), Positives = 7/25 (28%)
Query: 33 IHIRNIPNEVTEAEIIHLGIPFGRV 57
+ I IP EI+
Sbjct: 4 LFIGGIPKMKKREEILEEIAKVTEG 28
>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing
factor PRP24 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 75
Score = 25.6 bits (55), Expect = 0.76
Identities = 5/32 (15%), Positives = 14/32 (43%)
Query: 33 IHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK 64
+ ++N+P + ++ G + +V V
Sbjct: 3 VLVKNLPKSYNQNKVYKYFKHCGPIIHVDVAD 34
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 25.5 bits (55), Expect = 0.84
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 33 IHIRNIPNEVTEAEIIHLGIPFGRV 57
I I N+ E+ E + FG +
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVI 25
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 25.4 bits (55), Expect = 0.86
Identities = 6/27 (22%), Positives = 15/27 (55%)
Query: 33 IHIRNIPNEVTEAEIIHLGIPFGRVTN 59
+++ +P +T+ E+ L +GR+
Sbjct: 9 LYVSGLPKTMTQKELEQLFSQYGRIIT 35
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding
protein 1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 25.8 bits (56), Expect = 0.96
Identities = 3/22 (13%), Positives = 11/22 (50%)
Query: 29 PSRVIHIRNIPNEVTEAEIIHL 50
+ I ++P E + +++ +
Sbjct: 17 EGANLFIYHLPQEFGDQDLLQM 38
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 25.4 bits (55), Expect = 1.0
Identities = 6/31 (19%), Positives = 16/31 (51%)
Query: 29 PSRVIHIRNIPNEVTEAEIIHLGIPFGRVTN 59
+ +H+ NIP + ++ + FG++ +
Sbjct: 10 TPKRLHVSNIPFRFRDPDLRQMFGQFGKILD 40
>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1,
Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 75
Score = 24.9 bits (53), Expect = 1.3
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 33 IHIRNIPNEVTEAEIIHLGIPF 54
I IR +P +VT E+ L +
Sbjct: 1 ILIRGLPGDVTNQEVHDLLSDY 22
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 25.1 bits (54), Expect = 1.5
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 28 KPSRVIHIRNIPNEVTEAEI 47
+ R + + NIP E TE ++
Sbjct: 6 RSLRSVFVGNIPYEATEEQL 25
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 24.5 bits (53), Expect = 1.9
Identities = 5/31 (16%), Positives = 13/31 (41%)
Query: 24 KSDFKPSRVIHIRNIPNEVTEAEIIHLGIPF 54
K + + + + +P + TE ++ F
Sbjct: 2 KRAVQKTSDLIVLGLPWKTTEQDLKEYFSTF 32
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 24.6 bits (53), Expect = 2.2
Identities = 6/31 (19%), Positives = 14/31 (45%)
Query: 30 SRVIHIRNIPNEVTEAEIIHLGIPFGRVTNV 60
+ + I +PN + + ++ L FG +
Sbjct: 1 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAF 31
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 75
Score = 24.3 bits (52), Expect = 2.3
Identities = 6/27 (22%), Positives = 12/27 (44%)
Query: 33 IHIRNIPNEVTEAEIIHLGIPFGRVTN 59
I + + T ++ H FG+V +
Sbjct: 2 IFVGGLSVNTTVEDVKHYFEQFGKVDD 28
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 24.2 bits (52), Expect = 2.9
Identities = 6/32 (18%), Positives = 13/32 (40%)
Query: 33 IHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLK 64
I I+N+ + + FG + + V+
Sbjct: 11 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVC 42
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP
A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 23.9 bits (51), Expect = 3.7
Identities = 3/24 (12%), Positives = 8/24 (33%)
Query: 31 RVIHIRNIPNEVTEAEIIHLGIPF 54
+ I + I + E + +
Sbjct: 3 KKIFVGGIKEDTEEHHLRDYFEQY 26
>d1giqa2 d.166.1.1 (A:210-413) Enzymatic component (Ia) of
iota-toxin {Clostridium perfringens [TaxId: 1502]}
Length = 204
Score = 24.3 bits (52), Expect = 3.9
Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 6/54 (11%)
Query: 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFG---RVTNVLVLKGKNQLLLHLEAEII 78
K S ++ IP E E++ + G ++ V K L L+A +I
Sbjct: 153 KDSPGAYLSAIPGYAGEYEVL---LNHGSKFKINKVDSYKDGTVTKLILDATLI 203
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 23.4 bits (50), Expect = 4.5
Identities = 4/23 (17%), Positives = 9/23 (39%)
Query: 33 IHIRNIPNEVTEAEIIHLGIPFG 55
+ I + + T+ + FG
Sbjct: 3 MFIGGLSWQTTQEGLREYFGQFG 25
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 23.4 bits (50), Expect = 4.8
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 33 IHIRNIPNEVTEAEIIHLGIPFG 55
I + + + E +I FG
Sbjct: 2 IFVGGLSPDTPEEKIREYFGGFG 24
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 23.2 bits (49), Expect = 5.5
Identities = 5/22 (22%), Positives = 13/22 (59%)
Query: 33 IHIRNIPNEVTEAEIIHLGIPF 54
++IR + T+ +++ L P+
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPY 22
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9
(SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 98
Score = 23.2 bits (49), Expect = 6.4
Identities = 13/85 (15%), Positives = 28/85 (32%), Gaps = 4/85 (4%)
Query: 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAEIIHLGIPFGRV 87
+ + + +P + ++ G V V K ++ +L E + + R
Sbjct: 13 RSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDGMGMVEYLRKEDMEYAL---RK 69
Query: 88 TNVLVLKGKN-QVSLISGYRNRQSA 111
+ + + S I Y R S
Sbjct: 70 LDDTKFRSHEGETSYIRVYPERSSG 94
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 22.7 bits (48), Expect = 8.0
Identities = 4/17 (23%), Positives = 8/17 (47%)
Query: 31 RVIHIRNIPNEVTEAEI 47
R + I + E T+ +
Sbjct: 7 RKLFIGGLSFETTDESL 23
>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 113
Score = 23.2 bits (49), Expect = 8.1
Identities = 3/49 (6%), Positives = 19/49 (38%)
Query: 28 KPSRVIHIRNIPNEVTEAEIIHLGIPFGRVTNVLVLKGKNQLLLHLEAE 76
+ ++ ++ ++ L G + + ++G + ++ + +
Sbjct: 9 IGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEK 57
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 22.8 bits (48), Expect = 9.5
Identities = 1/18 (5%), Positives = 6/18 (33%)
Query: 30 SRVIHIRNIPNEVTEAEI 47
+ + + + E +
Sbjct: 5 EGKLFVGGLSFDTNEQSL 22
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.141 0.390
Gapped
Lambda K H
0.267 0.0551 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 413,965
Number of extensions: 17158
Number of successful extensions: 99
Number of sequences better than 10.0: 1
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 75
Length of query: 118
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 44
Effective length of database: 1,391,576
Effective search space: 61229344
Effective search space used: 61229344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.3 bits)