BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9172
(80 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6ICX4|PTBP3_ARATH Polypyrimidine tract-binding protein homolog 3 OS=Arabidopsis
thaliana GN=At1g43190 PE=2 SV=1
Length = 432
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Query: 4 ASAQAALQAAQALTGQTDTQGGPNTVLRVIIEHMLYPITLDVLYQ-FDNYKF 54
+S Q Q + G+ D PN +L V I HMLYPIT+DVL+Q F Y F
Sbjct: 78 SSHQELTTIEQNIHGREDE---PNRILLVTIHHMLYPITVDVLHQVFSPYGF 126
>sp|P17225|PTBP1_MOUSE Polypyrimidine tract-binding protein 1 OS=Mus musculus GN=Ptbp1
PE=1 SV=2
Length = 527
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 14/67 (20%)
Query: 2 NSASAQAALQAAQAL-TGQTDTQ------------GGPNTVLRVIIEHMLYPITLDVLYQ 48
N AQAALQA ++ +G G + VLR+I+E++ YP+TLDVL+Q
Sbjct: 142 NQVRAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSPVLRIIVENLFYPVTLDVLHQ 201
Query: 49 FDNYKFG 55
+ KFG
Sbjct: 202 IFS-KFG 207
>sp|Q9Z118|PTBP3_RAT Polypyrimidine tract-binding protein 3 OS=Rattus norvegicus
GN=Ptbp3 PE=2 SV=1
Length = 523
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 36/53 (67%), Gaps = 6/53 (11%)
Query: 8 AALQAAQ-ALTGQTDTQG----GPNTVLRVIIEHMLYPITLDVLYQFDNYKFG 55
+A+Q+ +L G T +G G + VLR+IIE++ YP+TL+VL+Q + KFG
Sbjct: 126 SAVQSGNLSLPGATSNEGTLLPGQSPVLRIIIENLFYPVTLEVLHQIFS-KFG 177
>sp|Q9UKA9|PTBP2_HUMAN Polypyrimidine tract-binding protein 2 OS=Homo sapiens GN=PTBP2
PE=1 SV=1
Length = 531
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 12/61 (19%)
Query: 6 AQAALQAAQA-------LTGQTDTQGG----PNTVLRVIIEHMLYPITLDVLYQFDNYKF 54
AQA LQA A L+G T ++ + VLR+II++M YP+TLDVL+Q + KF
Sbjct: 146 AQAVLQAVTAVQTANTPLSGTTVSESAVTPAQSPVLRIIIDNMYYPVTLDVLHQIFS-KF 204
Query: 55 G 55
G
Sbjct: 205 G 205
>sp|Q8BHD7|PTBP3_MOUSE Polypyrimidine tract-binding protein 3 OS=Mus musculus GN=Ptbp3
PE=2 SV=1
Length = 523
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 36/53 (67%), Gaps = 6/53 (11%)
Query: 8 AALQAAQ-ALTGQTDTQG----GPNTVLRVIIEHMLYPITLDVLYQFDNYKFG 55
+A+Q+ +L G T +G G + VLR+IIE++ YP+TL+VL+Q + KFG
Sbjct: 126 SAVQSGNLSLPGATANEGTLLPGQSPVLRIIIENLFYPVTLEVLHQIFS-KFG 177
>sp|O95758|PTBP3_HUMAN Polypyrimidine tract-binding protein 3 OS=Homo sapiens GN=PTBP3
PE=1 SV=2
Length = 552
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 36/53 (67%), Gaps = 6/53 (11%)
Query: 8 AALQAAQ-ALTGQTDTQG----GPNTVLRVIIEHMLYPITLDVLYQFDNYKFG 55
+A+Q+ AL+G +G G + VLR+IIE++ YP+TL+VL+Q + KFG
Sbjct: 155 SAVQSGSLALSGGPSNEGTVLPGQSPVLRIIIENLFYPVTLEVLHQIFS-KFG 206
>sp|Q00438|PTBP1_RAT Polypyrimidine tract-binding protein 1 OS=Rattus norvegicus
GN=Ptbp1 PE=1 SV=1
Length = 555
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 25/31 (80%), Gaps = 1/31 (3%)
Query: 25 GPNTVLRVIIEHMLYPITLDVLYQFDNYKFG 55
G + VLR+I+E++ YP+TLDVL+Q + KFG
Sbjct: 178 GQSPVLRIIVENLFYPVTLDVLHQIFS-KFG 207
>sp|Q29099|PTBP1_PIG Polypyrimidine tract-binding protein 1 OS=Sus scrofa GN=PTBP1 PE=2
SV=1
Length = 557
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 25/31 (80%), Gaps = 1/31 (3%)
Query: 25 GPNTVLRVIIEHMLYPITLDVLYQFDNYKFG 55
G + VLR+I+E++ YP+TLDVL+Q + KFG
Sbjct: 179 GQSPVLRIIVENLFYPVTLDVLHQIFS-KFG 208
>sp|Q8WN55|PTBP1_BOVIN Polypyrimidine tract-binding protein 1 OS=Bos taurus GN=PTBP1 PE=2
SV=1
Length = 531
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 25/31 (80%), Gaps = 1/31 (3%)
Query: 25 GPNTVLRVIIEHMLYPITLDVLYQFDNYKFG 55
G + VLR+I+E++ YP+TLDVL+Q + KFG
Sbjct: 179 GQSPVLRIIVENLFYPVTLDVLHQIFS-KFG 208
>sp|P26599|PTBP1_HUMAN Polypyrimidine tract-binding protein 1 OS=Homo sapiens GN=PTBP1
PE=1 SV=1
Length = 531
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 25/31 (80%), Gaps = 1/31 (3%)
Query: 25 GPNTVLRVIIEHMLYPITLDVLYQFDNYKFG 55
G + VLR+I+E++ YP+TLDVL+Q + KFG
Sbjct: 179 GQSPVLRIIVENLFYPVTLDVLHQIFS-KFG 208
>sp|Q66H20|PTBP2_RAT Polypyrimidine tract-binding protein 2 OS=Rattus norvegicus
GN=Ptbp2 PE=2 SV=1
Length = 531
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 12/61 (19%)
Query: 6 AQAALQAAQA-------LTGQTDTQGG----PNTVLRVIIEHMLYPITLDVLYQFDNYKF 54
AQ LQA A L+G T ++ + VLR+II++M YP+TLDVL+Q + KF
Sbjct: 146 AQVVLQAVTAVQTANTPLSGTTVSESAVTPAQSPVLRIIIDNMYYPVTLDVLHQIFS-KF 204
Query: 55 G 55
G
Sbjct: 205 G 205
>sp|Q91Z31|PTBP2_MOUSE Polypyrimidine tract-binding protein 2 OS=Mus musculus GN=Ptbp2
PE=1 SV=2
Length = 531
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 12/61 (19%)
Query: 6 AQAALQAAQA-------LTGQTDTQGG----PNTVLRVIIEHMLYPITLDVLYQFDNYKF 54
AQ LQA A L+G T ++ + VLR+II++M YP+TLDVL+Q + KF
Sbjct: 146 AQVVLQAVTAVQTANTPLSGTTVSESAVTPAQSPVLRIIIDNMYYPVTLDVLHQIFS-KF 204
Query: 55 G 55
G
Sbjct: 205 G 205
>sp|Q8WVV9|HNRLL_HUMAN Heterogeneous nuclear ribonucleoprotein L-like OS=Homo sapiens
GN=HNRPLL PE=1 SV=1
Length = 542
Score = 36.6 bits (83), Expect = 0.047, Method: Composition-based stats.
Identities = 18/34 (52%), Positives = 22/34 (64%)
Query: 18 GQTDTQGGPNTVLRVIIEHMLYPITLDVLYQFDN 51
G TD G N VL + I++ LYPIT+DVLY N
Sbjct: 157 GNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVCN 190
>sp|Q921F4|HNRLL_MOUSE Heterogeneous nuclear ribonucleoprotein L-like OS=Mus musculus
GN=Hnrpll PE=1 SV=3
Length = 591
Score = 36.6 bits (83), Expect = 0.048, Method: Composition-based stats.
Identities = 18/34 (52%), Positives = 22/34 (64%)
Query: 18 GQTDTQGGPNTVLRVIIEHMLYPITLDVLYQFDN 51
G TD G N VL + I++ LYPIT+DVLY N
Sbjct: 206 GNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVCN 239
>sp|Q55276|LCYB_SYNE7 Lycopene beta cyclase OS=Synechococcus elongatus (strain PCC 7942)
GN=crtL PE=1 SV=1
Length = 411
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 8/70 (11%)
Query: 3 SASAQAALQAAQALTGQTDTQGGPNTVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL 62
S+S A A QA G T+ I +H +Y L+ L +F + H F T
Sbjct: 303 SSSLTTAELATQAWRGLWPTEK--------IRKHYIYQFGLEKLMRFSEAQLNHHFQTFF 354
Query: 63 AMPRDELAGF 72
+P+++ GF
Sbjct: 355 GLPKEQWYGF 364
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.129 0.361
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,386,906
Number of Sequences: 539616
Number of extensions: 788794
Number of successful extensions: 1621
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1599
Number of HSP's gapped (non-prelim): 19
length of query: 80
length of database: 191,569,459
effective HSP length: 51
effective length of query: 29
effective length of database: 164,049,043
effective search space: 4757422247
effective search space used: 4757422247
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)