Query psy9172
Match_columns 80
No_of_seqs 120 out of 130
Neff 3.4
Searched_HMMs 29240
Date Fri Aug 16 20:42:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9172.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9172hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1sjr_A Polypyrimidine tract-bi 98.9 8.5E-10 2.9E-14 77.6 3.6 58 4-62 8-78 (164)
2 3zzy_A Polypyrimidine tract-bi 98.9 1.4E-09 4.7E-14 73.8 3.6 42 20-62 19-60 (130)
3 2e5i_A Heterogeneous nuclear r 98.6 5.5E-08 1.9E-12 64.8 5.0 40 22-62 18-57 (124)
4 2pe8_A Splicing factor 45; RRM 95.9 0.0087 3E-07 37.7 3.8 49 21-72 2-58 (105)
5 3v4m_A Splicing factor U2AF 65 95.8 0.0089 3E-07 37.6 3.4 40 24-66 2-51 (105)
6 3s8s_A Histone-lysine N-methyl 95.3 0.014 4.9E-07 36.6 3.2 41 31-72 8-50 (110)
7 3r27_A HnRNP L, heterogeneous 95.2 0.018 6E-07 37.0 3.6 45 23-72 17-61 (100)
8 2cq3_A RNA-binding protein 9; 95.0 0.037 1.3E-06 33.1 4.4 44 27-71 13-56 (103)
9 2cqi_A Nucleolysin TIAR; RNA r 94.9 0.03 1E-06 33.5 3.6 44 28-72 14-57 (103)
10 2krb_A Eukaryotic translation 94.7 0.028 9.6E-07 32.4 3.1 41 31-72 3-49 (81)
11 2nlw_A Eukaryotic translation 94.7 0.029 1E-06 34.2 3.3 41 31-72 17-63 (105)
12 2cq2_A Hypothetical protein LO 94.7 0.021 7.1E-07 37.4 2.7 48 23-73 21-68 (114)
13 2dgv_A HnRNP M, heterogeneous 94.6 0.028 9.4E-07 32.8 3.0 41 31-72 10-50 (92)
14 3md3_A Nuclear and cytoplasmic 94.5 0.12 4.2E-06 31.8 6.0 60 4-64 52-121 (166)
15 2kn4_A Immunoglobulin G-bindin 94.5 0.092 3.1E-06 33.5 5.5 35 28-63 69-103 (158)
16 2lkz_A RNA-binding protein 5; 94.4 0.024 8.3E-07 35.0 2.4 38 31-69 11-48 (95)
17 3ns6_A Eukaryotic translation 94.3 0.027 9.4E-07 34.1 2.5 35 31-68 8-48 (100)
18 2d9p_A Polyadenylate-binding p 94.3 0.044 1.5E-06 32.7 3.4 39 26-65 12-50 (103)
19 4f25_A Polyadenylate-binding p 94.2 0.033 1.1E-06 34.6 2.7 41 31-72 7-47 (115)
20 2cpf_A RNA binding motif prote 94.1 0.031 1.1E-06 33.0 2.4 35 31-66 7-41 (98)
21 2err_A Ataxin-2-binding protei 94.0 0.043 1.5E-06 33.7 3.0 42 30-72 30-71 (109)
22 2dgo_A Cytotoxic granule-assoc 93.8 0.11 3.8E-06 31.5 4.7 39 24-63 10-48 (115)
23 3bs9_A Nucleolysin TIA-1 isofo 93.7 0.068 2.3E-06 30.6 3.4 35 29-64 6-40 (87)
24 2cq1_A PTB-like protein L; RRM 93.6 0.069 2.4E-06 33.4 3.5 45 23-72 11-55 (101)
25 2khc_A Testis-specific RNP-typ 93.6 0.068 2.3E-06 32.6 3.3 33 30-63 41-73 (118)
26 3s7r_A Heterogeneous nuclear r 93.6 0.068 2.3E-06 30.9 3.2 34 30-64 12-45 (87)
27 3nmr_A Cugbp ELAV-like family 93.5 0.14 4.7E-06 32.0 4.8 32 31-63 97-128 (175)
28 1wex_A Hypothetical protein (r 93.5 0.081 2.8E-06 33.1 3.7 44 24-72 12-55 (104)
29 1x4c_A Splicing factor, argini 93.5 0.11 3.7E-06 31.6 4.2 37 26-63 12-48 (108)
30 2cph_A RNA binding motif prote 93.5 0.076 2.6E-06 31.7 3.4 34 29-63 15-48 (107)
31 1b7f_A Protein (SXL-lethal pro 93.4 0.16 5.5E-06 31.6 5.0 56 4-62 56-121 (168)
32 1fxl_A Paraneoplastic encephal 93.3 0.12 4.3E-06 31.8 4.3 32 31-63 90-121 (167)
33 1x4a_A Splicing factor, argini 93.3 0.09 3.1E-06 31.7 3.6 31 31-62 24-54 (109)
34 1x5s_A Cold-inducible RNA-bind 93.3 0.069 2.3E-06 31.7 3.0 33 30-63 13-45 (102)
35 2ytc_A PRE-mRNA-splicing facto 93.3 0.071 2.4E-06 30.6 2.9 32 29-61 12-43 (85)
36 2cqc_A Arginine/serine-rich sp 93.3 0.068 2.3E-06 31.1 2.9 33 30-63 16-48 (95)
37 2m2b_A RNA-binding protein 10; 93.0 0.059 2E-06 34.0 2.5 37 31-68 25-61 (131)
38 1x5u_A Splicing factor 3B subu 93.0 0.11 3.8E-06 30.9 3.6 33 30-63 16-48 (105)
39 4f02_A Polyadenylate-binding p 93.0 0.078 2.7E-06 35.6 3.2 41 31-72 105-145 (213)
40 2e5j_A Methenyltetrahydrofolat 92.9 0.055 1.9E-06 32.2 2.2 38 31-72 21-58 (97)
41 1whx_A Hypothetical protein ri 92.9 0.07 2.4E-06 33.0 2.7 35 31-68 12-46 (111)
42 3tyt_A Heterogeneous nuclear r 92.9 0.1 3.4E-06 35.8 3.7 36 25-63 2-38 (205)
43 3d2w_A TAR DNA-binding protein 92.9 0.09 3.1E-06 31.4 3.0 38 31-72 13-50 (89)
44 1x4e_A RNA binding motif, sing 92.8 0.11 3.6E-06 29.9 3.2 33 31-64 7-39 (85)
45 2ad9_A Polypyrimidine tract-bi 92.8 0.099 3.4E-06 34.1 3.4 46 22-72 26-71 (119)
46 4fxv_A ELAV-like protein 1; RN 92.8 0.092 3.1E-06 32.1 3.1 32 31-63 21-52 (99)
47 1wi8_A EIF-4B, eukaryotic tran 92.7 0.25 8.7E-06 29.5 5.0 37 27-67 13-49 (104)
48 3mdf_A Peptidyl-prolyl CIS-tra 92.7 0.12 4.2E-06 29.4 3.4 31 31-62 9-39 (85)
49 1whw_A Hypothetical protein ri 92.7 0.1 3.5E-06 30.8 3.1 32 30-62 9-40 (99)
50 1x4d_A Matrin 3; structural ge 92.7 0.074 2.5E-06 33.6 2.6 44 24-72 12-56 (102)
51 3ex7_B RNA-binding protein 8A; 92.6 0.12 4E-06 31.9 3.4 35 30-67 23-57 (126)
52 2cq0_A Eukaryotic translation 92.6 0.19 6.4E-06 29.9 4.2 34 28-62 14-47 (103)
53 2x1f_A MRNA 3'-END-processing 92.6 0.12 4E-06 30.5 3.2 33 31-64 4-36 (96)
54 2la6_A RNA-binding protein FUS 92.5 0.13 4.5E-06 30.5 3.4 33 26-59 10-42 (99)
55 2mss_A Protein (musashi1); RNA 92.5 0.076 2.6E-06 29.8 2.2 31 31-62 1-31 (75)
56 2dnz_A Probable RNA-binding pr 92.4 0.14 4.9E-06 29.8 3.5 32 31-63 7-38 (95)
57 3ucg_A Polyadenylate-binding p 92.4 0.14 4.7E-06 29.4 3.4 32 31-63 8-39 (89)
58 1x4h_A RNA-binding protein 28; 92.4 0.14 4.7E-06 30.7 3.5 34 31-67 17-50 (111)
59 1sjq_A Polypyrimidine tract-bi 92.4 0.057 2E-06 34.8 1.8 40 30-72 17-56 (105)
60 2dgs_A DAZ-associated protein 92.4 0.19 6.5E-06 29.7 4.1 32 30-62 11-42 (99)
61 4a8x_A RNA-binding protein wit 92.4 0.13 4.4E-06 29.4 3.2 33 31-64 6-38 (88)
62 1uaw_A Mouse-musashi-1; RNP-ty 92.3 0.087 3E-06 29.5 2.4 35 31-68 2-36 (77)
63 2ywk_A Putative RNA-binding pr 92.2 0.14 4.8E-06 29.8 3.3 34 31-67 18-51 (95)
64 1wf0_A TDP-43, TAR DNA-binding 92.2 0.11 3.9E-06 30.1 2.8 31 31-62 7-37 (88)
65 2cqb_A Peptidyl-prolyl CIS-tra 92.2 0.11 3.7E-06 30.8 2.8 34 31-67 14-47 (102)
66 2diu_A KIAA0430 protein; struc 92.1 0.17 5.8E-06 33.1 3.9 33 25-59 6-43 (96)
67 2dgt_A RNA-binding protein 30; 92.1 0.18 6.3E-06 29.4 3.7 34 28-62 9-42 (92)
68 1x5t_A Splicing factor 3B subu 92.1 0.1 3.4E-06 30.6 2.5 29 31-60 7-35 (96)
69 1why_A Hypothetical protein ri 92.0 0.093 3.2E-06 31.0 2.3 35 31-68 19-53 (97)
70 2lea_A Serine/arginine-rich sp 91.9 0.096 3.3E-06 33.6 2.5 32 30-62 48-79 (135)
71 2dnm_A SRP46 splicing factor; 91.9 0.24 8.3E-06 29.4 4.1 33 29-62 13-45 (103)
72 2e5h_A Zinc finger CCHC-type a 91.9 0.12 4.2E-06 30.0 2.7 31 31-62 18-48 (94)
73 2jrs_A RNA-binding protein 39; 91.9 0.25 8.7E-06 30.3 4.3 36 27-63 24-59 (108)
74 2ku7_A MLL1 PHD3-CYP33 RRM chi 91.8 0.23 8E-06 30.6 4.1 37 28-67 62-98 (140)
75 3md1_A Nuclear and cytoplasmic 91.8 0.17 5.7E-06 28.7 3.2 32 31-63 3-34 (83)
76 2dnh_A Bruno-like 5, RNA bindi 91.8 0.16 5.3E-06 30.3 3.2 32 31-63 17-48 (105)
77 2cq4_A RNA binding motif prote 91.7 0.18 6.3E-06 30.6 3.5 32 31-63 27-58 (114)
78 2dgp_A Bruno-like 4, RNA bindi 91.7 0.19 6.4E-06 30.0 3.5 35 27-62 11-45 (106)
79 2cpz_A CUG triplet repeat RNA- 91.7 0.13 4.3E-06 31.4 2.7 33 31-64 27-59 (115)
80 1oo0_B CG8781-PA, drosophila Y 91.6 0.19 6.4E-06 30.2 3.4 32 30-62 27-58 (110)
81 3beg_B Splicing factor, argini 91.6 0.11 3.9E-06 32.2 2.5 33 29-62 16-48 (115)
82 2dh8_A DAZ-associated protein 91.6 0.13 4.4E-06 30.7 2.6 37 26-63 13-49 (105)
83 2cqg_A TDP-43, TAR DNA-binding 91.5 0.17 5.7E-06 30.1 3.1 32 31-63 17-48 (103)
84 2rs2_A Musashi-1, RNA-binding 91.5 0.15 5E-06 31.3 2.9 31 31-62 27-57 (109)
85 1x4b_A Heterogeneous nuclear r 91.3 0.19 6.5E-06 30.6 3.3 32 30-62 28-59 (116)
86 1p1t_A Cleavage stimulation fa 91.3 0.12 4.2E-06 30.6 2.3 33 31-64 10-42 (104)
87 2jwn_A Embryonic polyadenylate 91.2 0.17 5.8E-06 31.0 3.0 31 31-62 38-68 (124)
88 2dgx_A KIAA0430 protein; RRM d 91.2 0.27 9.3E-06 29.2 3.8 34 29-63 9-46 (96)
89 2g4b_A Splicing factor U2AF 65 91.2 0.16 5.4E-06 31.8 2.8 33 30-63 95-127 (172)
90 2cqd_A RNA-binding region cont 91.0 0.22 7.7E-06 30.3 3.3 33 29-62 17-49 (116)
91 1rk8_A CG8781-PA, CG8781-PA pr 90.9 0.2 6.8E-06 32.7 3.2 31 31-62 74-104 (165)
92 1u6f_A Tcubp1, RNA-binding pro 90.9 0.14 4.9E-06 32.0 2.5 35 29-64 42-76 (139)
93 2do4_A Squamous cell carcinoma 90.9 0.2 6.7E-06 29.7 2.9 31 31-62 19-49 (100)
94 1x5o_A RNA binding motif, sing 90.8 0.21 7.3E-06 30.2 3.1 32 31-63 27-58 (114)
95 2do0_A HnRNP M, heterogeneous 90.8 0.23 7.7E-06 30.0 3.2 31 31-62 17-47 (114)
96 2qfj_A FBP-interacting repress 90.7 0.21 7.2E-06 32.4 3.2 33 31-64 127-159 (216)
97 2cpj_A Non-POU domain-containi 90.6 0.16 5.6E-06 30.0 2.4 39 31-72 17-55 (99)
98 2xs2_A Deleted in azoospermia- 90.6 0.25 8.6E-06 29.3 3.3 36 30-68 10-45 (102)
99 2ki2_A SS-DNA binding protein 90.6 0.11 3.6E-06 30.2 1.5 31 31-62 3-33 (90)
100 2la4_A Nuclear and cytoplasmic 90.5 0.2 6.9E-06 29.7 2.8 32 30-62 28-59 (101)
101 2dit_A HIV TAT specific factor 90.5 0.27 9.2E-06 30.2 3.4 44 24-72 12-66 (112)
102 1l3k_A Heterogeneous nuclear r 90.5 0.23 7.8E-06 31.7 3.2 34 30-64 105-138 (196)
103 1iqt_A AUF1, heterogeneous nuc 90.4 0.12 4.1E-06 28.9 1.6 33 32-67 2-34 (75)
104 2cpx_A Hypothetical protein FL 90.2 0.16 5.6E-06 30.6 2.2 27 31-58 27-53 (115)
105 2cjk_A Nuclear polyadenylated 90.2 0.17 5.7E-06 31.6 2.3 32 31-63 89-120 (167)
106 3p5t_L Cleavage and polyadenyl 90.2 0.14 4.9E-06 30.0 1.8 32 31-63 3-36 (90)
107 2hvz_A Splicing factor, argini 90.1 0.18 6.2E-06 29.9 2.3 34 31-67 2-35 (101)
108 1h2v_Z 20 kDa nuclear CAP bind 90.1 0.27 9.2E-06 31.5 3.3 35 30-67 40-74 (156)
109 2dis_A Unnamed protein product 90.0 0.2 6.7E-06 30.0 2.4 30 31-61 10-40 (109)
110 2yh0_A Splicing factor U2AF 65 90.0 0.29 1E-05 31.3 3.4 34 28-62 113-146 (198)
111 2dnl_A Cytoplasmic polyadenyla 89.9 0.15 5E-06 31.4 1.8 27 31-58 10-36 (114)
112 2cpe_A RNA-binding protein EWS 89.9 0.37 1.3E-05 29.0 3.6 29 29-58 15-43 (113)
113 3ue2_A Poly(U)-binding-splicin 89.8 0.21 7.1E-06 32.2 2.5 39 25-66 18-61 (118)
114 2kxn_B Transformer-2 protein h 89.7 0.23 7.7E-06 31.7 2.7 33 30-63 47-79 (129)
115 3ulh_A THO complex subunit 4; 89.5 0.42 1.4E-05 28.4 3.6 32 29-61 29-60 (107)
116 2cpi_A CCR4-NOT transcription 89.5 0.18 6.3E-06 30.8 2.0 31 31-62 17-50 (111)
117 2ek1_A RNA-binding protein 12; 89.3 0.21 7.3E-06 29.0 2.2 33 30-63 16-48 (95)
118 1wez_A HnRNP H', FTP-3, hetero 89.3 0.37 1.3E-05 29.4 3.3 35 30-68 16-50 (102)
119 3lqv_A PRE-mRNA branch site pr 89.2 0.41 1.4E-05 28.9 3.5 31 31-62 10-40 (115)
120 2div_A TRNA selenocysteine ass 89.2 0.23 7.9E-06 29.2 2.3 27 31-58 11-37 (99)
121 2cjk_A Nuclear polyadenylated 89.2 0.35 1.2E-05 30.1 3.2 32 31-63 5-36 (167)
122 1p27_B RNA-binding protein 8A; 89.1 0.38 1.3E-05 28.6 3.2 32 30-62 24-55 (106)
123 1nu4_A U1A RNA binding domain; 89.1 0.28 9.5E-06 28.6 2.5 30 31-61 10-43 (97)
124 3s6e_A RNA-binding protein 39; 89.0 0.4 1.4E-05 30.7 3.5 44 24-72 4-57 (114)
125 2e44_A Insulin-like growth fac 89.0 0.18 6.1E-06 29.5 1.6 39 30-70 16-54 (96)
126 2j76_E EIF-4B, EIF4B, eukaryot 89.0 0.31 1E-05 29.2 2.7 35 30-68 20-54 (100)
127 2dgu_A Heterogeneous nuclear r 88.9 0.27 9.4E-06 29.3 2.5 31 30-61 12-42 (103)
128 1wf1_A RNA-binding protein RAL 88.9 0.3 1E-05 29.5 2.6 32 30-62 28-60 (110)
129 2fc9_A NCL protein; structure 88.9 0.45 1.5E-05 28.1 3.4 27 30-57 16-42 (101)
130 1x4g_A Nucleolysin TIAR; struc 88.8 0.26 8.9E-06 29.7 2.4 39 31-72 27-65 (109)
131 2dng_A Eukaryotic translation 88.8 0.78 2.7E-05 27.2 4.5 38 27-68 13-50 (103)
132 3nmr_A Cugbp ELAV-like family 88.7 0.36 1.2E-05 30.0 3.0 32 30-62 4-35 (175)
133 2dnq_A RNA-binding protein 4B; 88.6 0.59 2E-05 27.1 3.7 34 28-62 7-40 (90)
134 1x5p_A Negative elongation fac 88.5 0.42 1.4E-05 28.2 3.1 29 31-62 17-45 (97)
135 2dhg_A TRNA selenocysteine ass 88.5 0.34 1.1E-05 28.7 2.6 32 30-62 10-42 (104)
136 3egn_A RNA-binding protein 40; 88.4 0.21 7.1E-06 31.6 1.8 33 24-59 42-74 (143)
137 1wg5_A Heterogeneous nuclear r 88.4 0.69 2.4E-05 27.8 4.1 36 30-67 16-51 (104)
138 3md3_A Nuclear and cytoplasmic 88.4 0.37 1.3E-05 29.6 2.9 31 31-62 2-32 (166)
139 1s79_A Lupus LA protein; RRM, 88.4 0.37 1.3E-05 29.7 2.9 35 31-68 13-47 (103)
140 1l3k_A Heterogeneous nuclear r 88.2 0.44 1.5E-05 30.3 3.3 37 26-63 10-46 (196)
141 1wel_A RNA-binding protein 12; 88.1 0.24 8.4E-06 30.7 1.9 30 29-59 25-54 (124)
142 3sde_A Paraspeckle component 1 88.1 0.41 1.4E-05 33.1 3.2 58 4-64 69-130 (261)
143 3pgw_A U1-A; protein-RNA compl 88.0 0.38 1.3E-05 33.0 3.0 40 31-72 11-54 (282)
144 2e5g_A U6 snRNA-specific termi 87.8 0.44 1.5E-05 28.0 2.9 30 29-59 8-37 (94)
145 2jvr_A Nucleolar protein 3; RN 87.8 0.41 1.4E-05 30.4 2.9 45 25-72 24-69 (111)
146 1x4f_A Matrin 3; structural ge 87.8 0.3 1E-05 31.5 2.3 36 24-62 22-58 (112)
147 2a3j_A U1 small nuclear ribonu 87.7 0.39 1.3E-05 31.1 2.8 46 23-72 25-74 (127)
148 2xnq_A Nuclear polyadenylated 87.6 0.54 1.8E-05 28.2 3.2 31 31-62 24-55 (97)
149 2fy1_A RNA-binding motif prote 87.4 0.51 1.8E-05 29.2 3.1 35 31-68 9-43 (116)
150 2i2y_A Fusion protein consists 87.3 0.37 1.3E-05 30.6 2.5 37 28-67 72-108 (150)
151 2ghp_A U4/U6 snRNA-associated 87.3 0.49 1.7E-05 32.5 3.2 35 29-64 41-75 (292)
152 3q2s_C Cleavage and polyadenyl 87.2 0.45 1.5E-05 33.2 3.1 33 31-64 70-104 (229)
153 2cqp_A RNA-binding protein 12; 87.2 0.58 2E-05 27.3 3.2 32 30-62 16-47 (98)
154 2kvi_A Nuclear polyadenylated 87.2 0.49 1.7E-05 28.0 2.8 32 30-62 11-43 (96)
155 2kt5_A RNA and export factor-b 87.0 1.1 3.7E-05 27.5 4.5 39 27-68 33-71 (124)
156 3pgw_S U1-70K; protein-RNA com 86.9 0.4 1.4E-05 36.9 2.9 33 29-62 102-134 (437)
157 3tht_A Alkylated DNA repair pr 86.7 0.5 1.7E-05 36.0 3.3 45 24-73 15-61 (345)
158 1b7f_A Protein (SXL-lethal pro 86.4 0.64 2.2E-05 28.8 3.2 32 31-63 5-36 (168)
159 2qfj_A FBP-interacting repress 86.3 0.7 2.4E-05 29.9 3.4 31 31-62 30-60 (216)
160 1fxl_A Paraneoplastic encephal 86.1 0.65 2.2E-05 28.5 3.1 31 31-62 4-34 (167)
161 2bz2_A Negative elongation fac 86.1 0.5 1.7E-05 29.8 2.6 29 30-61 40-68 (121)
162 3n9u_C Cleavage and polyadenyl 86.1 0.53 1.8E-05 31.1 2.8 33 30-63 56-90 (156)
163 1fjc_A Nucleolin RBD2, protein 85.9 0.51 1.7E-05 27.5 2.4 27 31-58 18-44 (96)
164 2cpy_A RNA-binding protein 12; 85.7 1 3.4E-05 27.5 3.8 40 27-68 13-52 (114)
165 2wbr_A GW182, gawky, LD47780P; 85.6 0.45 1.5E-05 30.5 2.1 30 32-62 10-39 (89)
166 2lcw_A RNA-binding protein FUS 85.7 0.16 5.5E-06 31.0 0.0 28 31-59 9-36 (116)
167 2dnp_A RNA-binding protein 14; 85.3 0.47 1.6E-05 27.5 2.0 31 31-62 11-41 (90)
168 2jvo_A Nucleolar protein 3; nu 85.1 0.65 2.2E-05 28.5 2.7 32 30-62 32-63 (108)
169 2lmi_A GRSF-1, G-rich sequence 84.8 0.76 2.6E-05 27.8 2.9 40 27-69 9-51 (107)
170 1fj7_A Nucleolin RBD1, protein 84.6 0.41 1.4E-05 28.3 1.6 31 28-59 16-46 (101)
171 2cpd_A Apobec-1 stimulating pr 84.3 1.1 3.6E-05 26.4 3.3 33 28-61 14-48 (99)
172 2ghp_A U4/U6 snRNA-associated 84.2 0.71 2.4E-05 31.7 2.8 31 31-62 212-243 (292)
173 1fje_B Nucleolin RBD12, protei 83.8 0.98 3.4E-05 28.4 3.1 39 30-72 100-138 (175)
174 3smz_A Protein raver-1, ribonu 83.1 1 3.5E-05 30.8 3.3 57 4-63 68-128 (284)
175 2lxi_A RNA-binding protein 10; 83.0 0.64 2.2E-05 27.6 1.9 34 32-68 4-38 (91)
176 3sde_A Paraspeckle component 1 82.9 0.76 2.6E-05 31.7 2.5 32 30-62 23-54 (261)
177 2f3j_A RNA and export factor b 82.5 0.94 3.2E-05 30.4 2.8 36 30-68 89-124 (177)
178 2yh0_A Splicing factor U2AF 65 82.2 0.43 1.5E-05 30.5 1.0 26 31-57 6-31 (198)
179 4f02_A Polyadenylate-binding p 81.8 1.3 4.4E-05 29.5 3.3 32 31-63 17-48 (213)
180 2voo_A Lupus LA protein; RNA-b 81.4 1.2 4.1E-05 30.2 3.1 35 31-68 111-145 (193)
181 3smz_A Protein raver-1, ribonu 81.1 1.3 4.3E-05 30.3 3.1 30 31-62 24-53 (284)
182 2cqh_A IGF-II mRNA-binding pro 81.1 0.78 2.7E-05 26.6 1.8 31 31-62 10-40 (93)
183 2hgm_A HNRPF protein, heteroge 81.0 1.9 6.4E-05 28.0 3.8 38 30-69 43-80 (126)
184 1qm9_A Polypyrimidine tract-bi 80.9 1.1 3.7E-05 28.9 2.6 35 31-68 5-40 (198)
185 1owx_A Lupus LA protein, SS-B, 80.8 1 3.5E-05 29.8 2.5 48 20-72 11-59 (121)
186 3tyt_A Heterogeneous nuclear r 79.8 0.76 2.6E-05 31.3 1.6 35 32-67 126-160 (205)
187 2dgw_A Probable RNA-binding pr 78.8 2.5 8.4E-05 24.3 3.5 35 29-67 10-44 (91)
188 2hgn_A Heterogeneous nuclear r 78.0 1.1 3.8E-05 29.5 1.9 38 28-69 45-82 (139)
189 3pgw_A U1-A; protein-RNA compl 77.9 1.5 5.2E-05 29.9 2.7 32 31-63 209-240 (282)
190 2g4b_A Splicing factor U2AF 65 77.8 0.77 2.6E-05 28.6 1.1 24 31-55 6-29 (172)
191 2dha_A FLJ20171 protein; RRM d 77.8 1 3.6E-05 28.9 1.7 38 30-68 24-63 (123)
192 2hgl_A HNRPF protein, heteroge 77.7 1.7 5.6E-05 28.4 2.7 40 29-69 44-84 (136)
193 2db1_A Heterogeneous nuclear r 77.5 1.5 5.1E-05 27.1 2.4 37 29-68 17-56 (118)
194 1jmt_A Splicing factor U2AF 35 77.4 0.83 2.8E-05 28.2 1.1 15 48-63 45-60 (104)
195 2adc_A Polypyrimidine tract-bi 74.8 2.2 7.5E-05 28.7 2.8 40 24-68 31-71 (229)
196 2adc_A Polypyrimidine tract-bi 74.0 2.5 8.6E-05 28.4 2.9 41 30-72 152-193 (229)
197 1qm9_A Polypyrimidine tract-bi 73.8 1.7 5.7E-05 28.0 1.9 39 31-71 122-161 (198)
198 2d9o_A DNAJ (HSP40) homolog, s 73.6 1.8 6.3E-05 26.9 2.0 22 40-62 28-49 (100)
199 2hzc_A Splicing factor U2AF 65 72.7 2.3 7.9E-05 24.0 2.2 23 31-54 8-30 (87)
200 1wg1_A KIAA1579 protein, homol 71.5 2.8 9.5E-05 24.2 2.4 30 31-62 7-36 (88)
201 2j8a_A Histone-lysine N-methyl 63.2 5 0.00017 27.6 2.7 34 31-65 4-41 (136)
202 1fje_B Nucleolin RBD12, protei 62.4 2.4 8.3E-05 26.5 0.9 33 26-59 10-42 (175)
203 3u1l_A PRE-mRNA-splicing facto 59.3 5.9 0.0002 28.6 2.6 42 26-72 133-183 (240)
204 2dnn_A RNA-binding protein 12; 57.5 9.6 0.00033 23.6 3.0 36 30-69 17-52 (109)
205 2dnr_A Synaptojanin-1; RRM dom 51.8 13 0.00045 23.7 3.0 41 23-64 3-49 (91)
206 2fc8_A NCL protein; structure 48.5 11 0.00037 21.8 2.1 27 31-58 17-43 (102)
207 3dxb_A Thioredoxin N-terminall 33.1 19 0.00064 23.9 1.6 32 34-66 129-165 (222)
208 1ufw_A Synaptojanin 2; RNP dom 29.1 29 0.00098 22.4 1.9 42 22-64 10-58 (95)
No 1
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=98.89 E-value=8.5e-10 Score=77.63 Aligned_cols=58 Identities=43% Similarity=0.642 Sum_probs=35.5
Q ss_pred HHHHHHHHHhhhhhcCC-------------CCCCCCCcEEEEEEecccceeehhhhhhhhcccccceeeece
Q psy9172 4 ASAQAALQAAQALTGQT-------------DTQGGPNTVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL 62 (80)
Q Consensus 4 ~~aqaALqa~n~v~~~~-------------~~~~~pn~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~ 62 (80)
-.||++++++++++++. ..+.+|++||+|.|.|+-|+||-|.|+++|+ +||.|.+-.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ps~vl~l~VgNL~~~vted~L~~~Fs-~fG~V~~V~i 78 (164)
T 1sjr_A 8 GSAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSPVLRIIVENLFYPVTLDVLHQIFS-KFGTVLKIIT 78 (164)
T ss_dssp --------------------------------CCCCCCEEEEEECSCCSCCCHHHHHHHHH-HHSCEEEEEE
T ss_pred cchhHHHHHHHHhhcCCccccccccccccCCCCCCCCceEEEEEeCcCCCCCHHHHHHHHH-hcCCEEEEEE
Confidence 47899999998876641 2345789999999999999999999999999 9999986554
No 2
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=98.86 E-value=1.4e-09 Score=73.78 Aligned_cols=42 Identities=40% Similarity=0.677 Sum_probs=33.6
Q ss_pred CCCCCCCCcEEEEEEecccceeehhhhhhhhcccccceeeece
Q psy9172 20 TDTQGGPNTVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL 62 (80)
Q Consensus 20 ~~~~~~pn~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~ 62 (80)
++.+.+||+||+|.|.|+.|+||.|.||++|+ +||.|.+-.+
T Consensus 19 ~~~~~~ps~VL~I~V~NL~~~vte~~L~~lFs-~yG~V~~V~i 60 (130)
T 3zzy_A 19 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFS-KFGTVLKIIT 60 (130)
T ss_dssp ------CCSEEEEEEESCCSCCCHHHHHHHHT-TSSCEEEEEE
T ss_pred ccccCCCCceEEEEECCCCCCCCHHHHHHHHh-CcCCEEEEEE
Confidence 34667899999999999999999999999999 9999986533
No 3
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.59 E-value=5.5e-08 Score=64.79 Aligned_cols=40 Identities=40% Similarity=0.603 Sum_probs=36.5
Q ss_pred CCCCCCcEEEEEEecccceeehhhhhhhhcccccceeeece
Q psy9172 22 TQGGPNTVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL 62 (80)
Q Consensus 22 ~~~~pn~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~ 62 (80)
....||+||+|.|.|+-|+||-|.||++|+ +||.|.+-.+
T Consensus 18 ~~~~ps~vl~l~V~NL~~~vt~~~L~~~Fs-~yG~V~~v~i 57 (124)
T 2e5i_A 18 DPSGGNKVLLLSIQNPLYPITVDVLYTVCN-PVGKVQRIVI 57 (124)
T ss_dssp CCCCCCSEEEEEEESCCSCCCHHHHHHHHT-TTSCEEEEEE
T ss_pred CCCCCCcEEEEEEcCcCCCCCHHHHHHHHH-hcCCEEEEEE
Confidence 455789999999999999999999999999 9999987665
No 4
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=95.88 E-value=0.0087 Score=37.71 Aligned_cols=49 Identities=14% Similarity=-0.018 Sum_probs=33.3
Q ss_pred CCCCCCCcEEEEEEecccce-----eehhhhhhhhcccccceeeeceeecc---ccccCc
Q psy9172 21 DTQGGPNTVLRVIIEHMLYP-----ITLDVLYQFDNYKFGHAFSTSLAMPR---DELAGF 72 (80)
Q Consensus 21 ~~~~~pn~VLrviIeN~~YP-----VTldVLhqiFs~~fG~Vlrq~~a~~~---~~~~~~ 72 (80)
+....|+++|. +.||+.| -+-+-|...|+ +||.|.+=.+.... .++.||
T Consensus 2 ~i~~~~s~~l~--l~Nm~~~~~l~dd~~~dl~~~f~-~~G~V~~v~i~~~~~~~~~~~G~ 58 (105)
T 2pe8_A 2 AMGKCPTKVVL--LRNMVGAGEVDEDLEVETKEECE-KYGKVGKCVIFEIPGAPDDEAVR 58 (105)
T ss_dssp CGGGSCCSEEE--EESSSCSCCC---CHHHHHHHGG-GGSCEEEEEEEECSSCCTTTSEE
T ss_pred CCCCCCCCEEE--EEcCCChHHhhHHHHHHHHHHHH-hcCCEEEEEEecCCCCCCCCcEE
Confidence 34457788866 5599865 25578899999 99999876555432 245565
No 5
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=95.76 E-value=0.0089 Score=37.57 Aligned_cols=40 Identities=28% Similarity=0.404 Sum_probs=29.0
Q ss_pred CCCCcEEEEEEecccceeeh----------hhhhhhhcccccceeeeceeecc
Q psy9172 24 GGPNTVLRVIIEHMLYPITL----------DVLYQFDNYKFGHAFSTSLAMPR 66 (80)
Q Consensus 24 ~~pn~VLrviIeN~~YPVTl----------dVLhqiFs~~fG~Vlrq~~a~~~ 66 (80)
+.|++||. +.||+.|-.+ +=|...|+ +||.|.+=.+..+.
T Consensus 2 g~ps~vl~--L~Nm~~~~~l~~d~~~~~~~~dl~~~f~-k~G~V~~v~i~~~~ 51 (105)
T 3v4m_A 2 GHPTEVLC--LMNMVLPEELLDDEEYEEIVEDVRDECS-KYGLVKSIEIPRPV 51 (105)
T ss_dssp CSCCSEEE--EESSCCGGGSSSHHHHHHHHHHHHHHHH-TTSCEEEEECCCCB
T ss_pred CCCCeEEE--EECCCCHHHccChHHHHHHHHHHHHHHH-ccCCEEEEEEeccC
Confidence 45788865 6788877444 46889999 99999865554444
No 6
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=95.28 E-value=0.014 Score=36.59 Aligned_cols=41 Identities=12% Similarity=0.191 Sum_probs=31.8
Q ss_pred EEEEecccceeehhhhhhhhcccccceeeeceeecc--ccccCc
Q psy9172 31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPR--DELAGF 72 (80)
Q Consensus 31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~--~~~~~~ 72 (80)
.|-|.|+-+-+|-+-|..+|+ +||.|.+-++.... .++-||
T Consensus 8 ~lfV~nL~~~~te~~L~~~F~-~~G~i~~v~i~~d~~tg~~rG~ 50 (110)
T 3s8s_A 8 EVTFARLNDNVRETFLKDMCR-KYGEVEEVEILLHPRTRKHLGL 50 (110)
T ss_dssp EEEEESCCTTCCHHHHHHHHT-TTSCEEEEEEEECTTTCCEEEE
T ss_pred EEEEECCCCCCCHHHHHHHHH-hcCCeeEEEEEECCCCCceeeE
Confidence 577899999999999999999 99999865554432 244454
No 7
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=95.25 E-value=0.018 Score=37.01 Aligned_cols=45 Identities=11% Similarity=0.124 Sum_probs=34.0
Q ss_pred CCCCCcEEEEEEecccceeehhhhhhhhcccccceeeeceeeccccccCc
Q psy9172 23 QGGPNTVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDELAGF 72 (80)
Q Consensus 23 ~~~pn~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~~~~~ 72 (80)
...||++|. |-|+-+.+|-+-|..+|+ +||.|.+ +-+..++--||
T Consensus 17 ~~~ps~~l~--V~NLp~~~te~~L~~lF~-~fG~V~~--v~i~~~kg~AF 61 (100)
T 3r27_A 17 KTPASPVVH--IRGLIDGVVEADLVEALQ-EFGPISY--VVVMPKKRQAL 61 (100)
T ss_dssp CCCCCSEEE--EESCCTTCCHHHHHHHHG-GGSCEEE--EEEETTTTEEE
T ss_pred cCCCCcEEE--EeCCCCCCCHHHHHHHHh-ccCCEEE--EEEEcCCCEEE
Confidence 446888754 789999999999999999 9999964 33344454444
No 8
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.04 E-value=0.037 Score=33.08 Aligned_cols=44 Identities=16% Similarity=0.244 Sum_probs=33.1
Q ss_pred CcEEEEEEecccceeehhhhhhhhcccccceeeeceeeccccccC
Q psy9172 27 NTVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDELAG 71 (80)
Q Consensus 27 n~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~~~~ 71 (80)
.+--.|.|.|+-+-+|-+-|..+|+ +||.|.+-.+....+.+.|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~-~~G~v~~v~i~~~~~~~~g 56 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFG-QFGKILDVEIIFNERGSKG 56 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGG-GTSCEEEEEEECCTTTTCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCcE
Confidence 3445677899999999999999999 9999986555544333344
No 9
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.86 E-value=0.03 Score=33.50 Aligned_cols=44 Identities=9% Similarity=0.101 Sum_probs=33.4
Q ss_pred cEEEEEEecccceeehhhhhhhhcccccceeeeceeeccccccCc
Q psy9172 28 TVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDELAGF 72 (80)
Q Consensus 28 ~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~~~~~ 72 (80)
+--.|.|.|+-+-+|-+-|..+|+ +||.|.+-.+......+.||
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~g~ 57 (103)
T 2cqi_A 14 QPRTLYVGNLSRDVTEVLILQLFS-QIGPCKSCKMITEHTSNDPY 57 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHH-HHSCEEEEEEECCCCSSCCE
T ss_pred CCCEEEEeCCCccCCHHHHHHHHH-hcCCEeEEEEEecCCCCCCE
Confidence 345677899999999999999999 99999865555544444443
No 10
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=94.72 E-value=0.028 Score=32.44 Aligned_cols=41 Identities=12% Similarity=0.209 Sum_probs=28.3
Q ss_pred EEEEeccccee------ehhhhhhhhcccccceeeeceeeccccccCc
Q psy9172 31 RVIIEHMLYPI------TLDVLYQFDNYKFGHAFSTSLAMPRDELAGF 72 (80)
Q Consensus 31 rviIeN~~YPV------TldVLhqiFs~~fG~Vlrq~~a~~~~~~~~~ 72 (80)
.|-|.|+-+.+ |-+-|..+|+ +||.|.+-.+.....++.||
T Consensus 3 ~l~V~nLp~~~~~~~~~t~~~l~~~F~-~~G~i~~v~i~~~~g~~~g~ 49 (81)
T 2krb_A 3 VIVVDNVPQVGPDRLEKLKNVIHKIFS-KFGKITNDFYPEEDGKTKGY 49 (81)
T ss_dssp EEEEESCCCCCTTTHHHHHHHHHHHHH-TTCCEEEEECCCBTTBCCCE
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHHh-hcCCeEEEEecCCCCcEeEE
Confidence 35688886656 5699999999 99999765443223344554
No 11
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=94.69 E-value=0.029 Score=34.17 Aligned_cols=41 Identities=12% Similarity=0.209 Sum_probs=30.0
Q ss_pred EEEEeccccee------ehhhhhhhhcccccceeeeceeeccccccCc
Q psy9172 31 RVIIEHMLYPI------TLDVLYQFDNYKFGHAFSTSLAMPRDELAGF 72 (80)
Q Consensus 31 rviIeN~~YPV------TldVLhqiFs~~fG~Vlrq~~a~~~~~~~~~ 72 (80)
+|.|.|+-+.+ |-+-|..+|+ +||.|.+-.+.....++.||
T Consensus 17 ~l~V~nLp~~~~~~~~~t~~~l~~~F~-~~G~v~~v~i~~~~g~~~G~ 63 (105)
T 2nlw_A 17 VIVVDNVPQVGPDRLEKLKNVIHKIFS-KFGKITNDFYPEEDGKTKGY 63 (105)
T ss_dssp EEEEESCCCCCTTTTTHHHHHHHHHHG-GGSCEEEEECCCBTTBSCCE
T ss_pred EEEEeCCCcchhhhhHHHHHHHHHHHh-cCCCEEEEEeeCCCCCeeeE
Confidence 46789998877 7789999999 99999865444223344554
No 12
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.65 E-value=0.021 Score=37.42 Aligned_cols=48 Identities=19% Similarity=0.119 Sum_probs=35.4
Q ss_pred CCCCCcEEEEEEecccceeehhhhhhhhcccccceeeeceeeccccccCcc
Q psy9172 23 QGGPNTVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDELAGFR 73 (80)
Q Consensus 23 ~~~pn~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~~~~~~ 73 (80)
...|++.|-|---|+-|.+|-|-|..+|+ +||.|.+ +.|+.++.-||-
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~-~fG~v~~--v~i~~~rgfaFV 68 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLE-KCGLVDA--LLMPPNKPYSFA 68 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHH-HHSCEEE--EECCTTCSCEEE
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHH-hcCCeEE--EEEeCCCCEEEE
Confidence 34566665544366999999999999999 9999854 566767655653
No 13
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=94.65 E-value=0.028 Score=32.79 Aligned_cols=41 Identities=17% Similarity=0.361 Sum_probs=32.0
Q ss_pred EEEEecccceeehhhhhhhhcccccceeeeceeeccccccCc
Q psy9172 31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDELAGF 72 (80)
Q Consensus 31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~~~~~ 72 (80)
+|.|.|+-+.+|-+-|..+|+ +||.|.+-.+.....++-||
T Consensus 10 ~l~V~nlp~~~t~~~l~~~f~-~~G~v~~~~i~~~~g~~~g~ 50 (92)
T 2dgv_A 10 QIFVRNLPFDFTWKMLKDKFN-ECGHVLYADIKMENGKSKGC 50 (92)
T ss_dssp EEEECSCCTTCCHHHHHHHHH-TTSCEEEEEEEESSSCEEEE
T ss_pred EEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEccCCCcceE
Confidence 567899999999999999999 99999876665533334443
No 14
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=94.54 E-value=0.12 Score=31.83 Aligned_cols=60 Identities=13% Similarity=0.137 Sum_probs=40.9
Q ss_pred HHHHHHHHHhhhhhcC----------CCCCCCCCcEEEEEEecccceeehhhhhhhhcccccceeeeceee
Q psy9172 4 ASAQAALQAAQALTGQ----------TDTQGGPNTVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAM 64 (80)
Q Consensus 4 ~~aqaALqa~n~v~~~----------~~~~~~pn~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~ 64 (80)
..|+.|++.++..... ......+.+--.+.|.|+-+.+|-+-|..+|+ +||.|.+-.+..
T Consensus 52 ~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~-~~G~i~~~~i~~ 121 (166)
T 3md3_A 52 HDANIALQTLNGKQIENNIVKINWAFQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFK-DFPSYLSGHVMW 121 (166)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEECCCCCCCCCTTCEEEEEESCCTTCCHHHHHHHHT-TSTTEEEEEEEE
T ss_pred HHHHHHHHHcCCCccCCCeeEEEEcCCCCCCCCCCCceEEECCCCCCCCHHHHHHHHh-ccCCeeEEEEEe
Confidence 4677888777632111 11112233345678899999999999999999 999998655543
No 15
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=94.50 E-value=0.092 Score=33.47 Aligned_cols=35 Identities=14% Similarity=0.284 Sum_probs=28.9
Q ss_pred cEEEEEEecccceeehhhhhhhhcccccceeeecee
Q psy9172 28 TVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLA 63 (80)
Q Consensus 28 ~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a 63 (80)
+--.|-|.|+-+-+|-+-|..+|+ +||.|.+-.+.
T Consensus 69 ~~~~l~v~nl~~~~~~~~l~~~F~-~~G~v~~~~i~ 103 (158)
T 2kn4_A 69 GMTSLKVDNLTYRTSPDTLRRVFE-KYGRVGDVYIP 103 (158)
T ss_dssp BCCEEEEESCCTTCCHHHHHHHHH-HHSCEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEe
Confidence 345678899999999999999999 99999754443
No 16
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=94.38 E-value=0.024 Score=35.03 Aligned_cols=38 Identities=8% Similarity=0.191 Sum_probs=32.5
Q ss_pred EEEEecccceeehhhhhhhhcccccceeeeceeeccccc
Q psy9172 31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDEL 69 (80)
Q Consensus 31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~~ 69 (80)
.|.|.|+-+-+|-|-|.++|+ +||.+....+-+++|+.
T Consensus 11 tlfV~nL~~~~tee~L~~~F~-~~G~i~v~~v~i~~d~~ 48 (95)
T 2lkz_A 11 TIILRNIAPHTVVDSIMTALS-PYASLAVNNIRLIKDKQ 48 (95)
T ss_dssp EEEEESCCTTCCHHHHHHHST-TTCCCCGGGEECCCCSS
T ss_pred EEEEeCCCCcCCHHHHHHHHH-hhCCccEEEEEEEecCC
Confidence 478999999999999999999 99987666777777754
No 17
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=94.30 E-value=0.027 Score=34.13 Aligned_cols=35 Identities=20% Similarity=0.338 Sum_probs=27.9
Q ss_pred EEEEecccc------eeehhhhhhhhcccccceeeeceeecccc
Q psy9172 31 RVIIEHMLY------PITLDVLYQFDNYKFGHAFSTSLAMPRDE 68 (80)
Q Consensus 31 rviIeN~~Y------PVTldVLhqiFs~~fG~Vlrq~~a~~~~~ 68 (80)
.|.|.|+=| .+|-+-|..+|+ +||.|.+-. +++++
T Consensus 8 ~vfV~nLp~v~~~~~~~~~~~L~~~F~-~~G~i~~v~--i~~d~ 48 (100)
T 3ns6_A 8 YIVVNGAPVIPSAKVPVLKKALTSLFS-KAGKVVNME--FPIDE 48 (100)
T ss_dssp EEEEESCCCCBGGGHHHHHHHHHHHHH-TTSCEEEEE--CCEET
T ss_pred EEEEeCCCcCChHHHHHHHHHHHHHHH-hcCCEeEEE--EEEcC
Confidence 367899988 899999999999 999997544 44443
No 18
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.26 E-value=0.044 Score=32.74 Aligned_cols=39 Identities=18% Similarity=0.174 Sum_probs=31.6
Q ss_pred CCcEEEEEEecccceeehhhhhhhhcccccceeeeceeec
Q psy9172 26 PNTVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMP 65 (80)
Q Consensus 26 pn~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~ 65 (80)
+.+--+|.|.|+-+-+|-+-|..+|+ +||.|.+-.+...
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~ 50 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFS-PFGTITSAKVMME 50 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTT-TTSCEEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEcC
Confidence 33455788999999999999999999 9999976555443
No 19
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=94.18 E-value=0.033 Score=34.57 Aligned_cols=41 Identities=20% Similarity=0.368 Sum_probs=33.2
Q ss_pred EEEEecccceeehhhhhhhhcccccceeeeceeeccccccCc
Q psy9172 31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDELAGF 72 (80)
Q Consensus 31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~~~~~ 72 (80)
.|-|.|+-+-+|-+-|..+|+ +||.|.+-++......+-||
T Consensus 7 ~lfV~nLp~~~te~~L~~~F~-~~G~v~~v~i~~d~~~~kg~ 47 (115)
T 4f25_A 7 NIFIKNLDKSIDNKALYDTFS-AFGNILSCKVVCDENGSKGY 47 (115)
T ss_dssp EEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEEETTEEEEE
T ss_pred EEEECCCCCCCCHHHHHHHHh-ccCCEEEEEEeecCCCCCce
Confidence 478999999999999999999 99999876666555544444
No 20
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.06 E-value=0.031 Score=33.03 Aligned_cols=35 Identities=17% Similarity=0.244 Sum_probs=28.8
Q ss_pred EEEEecccceeehhhhhhhhcccccceeeeceeecc
Q psy9172 31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPR 66 (80)
Q Consensus 31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~ 66 (80)
.|.|.|+-+-+|-+-|..+|+ +||.|.+-.+....
T Consensus 7 ~l~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~ 41 (98)
T 2cpf_A 7 GLFIKNLNFSTTEETLKGVFS-KVGAIKSCTISKKK 41 (98)
T ss_dssp CEEEESCCTTCCHHHHHHHHH-TTSCEEEEEEEEEE
T ss_pred EEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecC
Confidence 466889999999999999999 99999765555443
No 21
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.97 E-value=0.043 Score=33.70 Aligned_cols=42 Identities=17% Similarity=0.298 Sum_probs=31.8
Q ss_pred EEEEEecccceeehhhhhhhhcccccceeeeceeeccccccCc
Q psy9172 30 LRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDELAGF 72 (80)
Q Consensus 30 LrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~~~~~ 72 (80)
-+|-|.|+-+-+|-+-|..+|+ +||.|.+-.+.....++-||
T Consensus 30 ~~l~V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~~~~~kg~ 71 (109)
T 2err_A 30 KRLHVSNIPFRFRDPDLRQMFG-QFGKILDVEIIFNERGSKGF 71 (109)
T ss_dssp CEEEEESCCTTCCHHHHHHHGG-GTCCCSCEEECCBTTBCTTE
T ss_pred CEEEEECCCCcCCHHHHHHHHH-hcCCEEEEEEEECCCCCceE
Confidence 3567899999999999999999 99999765554443333443
No 22
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=93.83 E-value=0.11 Score=31.49 Aligned_cols=39 Identities=13% Similarity=0.143 Sum_probs=31.4
Q ss_pred CCCCcEEEEEEecccceeehhhhhhhhcccccceeeecee
Q psy9172 24 GGPNTVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLA 63 (80)
Q Consensus 24 ~~pn~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a 63 (80)
..+.+--.|-|.|+-+-+|-+-|..+|+ +||.|.+-.+.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~ 48 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFA-PFGRISDARVV 48 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEE
Confidence 3444556788999999999999999999 99999754443
No 23
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=93.73 E-value=0.068 Score=30.65 Aligned_cols=35 Identities=14% Similarity=0.140 Sum_probs=28.8
Q ss_pred EEEEEEecccceeehhhhhhhhcccccceeeeceee
Q psy9172 29 VLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAM 64 (80)
Q Consensus 29 VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~ 64 (80)
--.|-|.|+-+-+|-+-|..+|+ +||.|.+-.+..
T Consensus 6 ~~~l~v~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~ 40 (87)
T 3bs9_A 6 HFHVFVGDLSPEITTAAIAAAFA-PFGRISDARVVK 40 (87)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEE
T ss_pred ceEEEEeCCCCCCCHHHHHHHHH-hcCCEeEEEEEe
Confidence 34677899999999999999999 999997554443
No 24
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.61 E-value=0.069 Score=33.36 Aligned_cols=45 Identities=22% Similarity=0.375 Sum_probs=34.0
Q ss_pred CCCCCcEEEEEEecccceeehhhhhhhhcccccceeeeceeeccccccCc
Q psy9172 23 QGGPNTVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDELAGF 72 (80)
Q Consensus 23 ~~~pn~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~~~~~ 72 (80)
...|+++|. |.|+-+-+|-+-|..+|+ +||.|.+ +.+..++--||
T Consensus 11 ~~~p~~~l~--V~nLp~~~te~~L~~~F~-~fG~v~~--v~i~~~kg~aF 55 (101)
T 2cq1_A 11 DGAPSRVLH--IRKLPGEVTETEVIALGL-PFGKVTN--ILMLKGKNQAF 55 (101)
T ss_dssp CSSCCSEEE--EESCCTTCCHHHHHHTTT-TTSCEEE--EEEETTTTEEE
T ss_pred cCCCCCEEE--EeCCCCCCCHHHHHHHHH-hcCCEEE--EEEECCCCEEE
Confidence 345676655 579999999999999999 9999964 44555655555
No 25
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=93.58 E-value=0.068 Score=32.63 Aligned_cols=33 Identities=21% Similarity=0.141 Sum_probs=28.1
Q ss_pred EEEEEecccceeehhhhhhhhcccccceeeecee
Q psy9172 30 LRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLA 63 (80)
Q Consensus 30 LrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a 63 (80)
-+|.|.|+-+-+|-+-|..+|+ +||.|.+-.+.
T Consensus 41 ~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~~~i~ 73 (118)
T 2khc_A 41 CNLFIYHLPQEFTDTDLASTFL-PFGNVISAKVF 73 (118)
T ss_dssp EEEEEECSCTTCCHHHHHHHTT-TSCEEEEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEE
Confidence 4677899999999999999999 99999754443
No 26
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=93.56 E-value=0.068 Score=30.86 Aligned_cols=34 Identities=15% Similarity=0.313 Sum_probs=28.5
Q ss_pred EEEEEecccceeehhhhhhhhcccccceeeeceee
Q psy9172 30 LRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAM 64 (80)
Q Consensus 30 LrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~ 64 (80)
-+|-|.|+-+.+|-+-|..+|+ +||.|.+-.+..
T Consensus 12 ~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~ 45 (87)
T 3s7r_A 12 GKMFVGGLSWDTSKKDLKDYFT-KFGEVVDCTIKM 45 (87)
T ss_dssp TEEEEECCCTTCCHHHHHHHHT-TTSCEEEEEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-hCCCEEEEEEee
Confidence 3567899999999999999999 999997655543
No 27
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=93.55 E-value=0.14 Score=32.00 Aligned_cols=32 Identities=13% Similarity=0.125 Sum_probs=27.5
Q ss_pred EEEEecccceeehhhhhhhhcccccceeeecee
Q psy9172 31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLA 63 (80)
Q Consensus 31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a 63 (80)
.+.|.|+-+.+|-+-|.++|+ +||.|.+-.+.
T Consensus 97 ~l~v~nl~~~~t~~~l~~~F~-~~G~i~~v~~~ 128 (175)
T 3nmr_A 97 KLFIGMISKKCTENDIRVMFS-SFGQIEECRIL 128 (175)
T ss_dssp EEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEE
T ss_pred eEEEcCCCCcCCHHHHHHHHH-hCCCEEEEEEE
Confidence 577899999999999999999 99999754443
No 28
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=93.52 E-value=0.081 Score=33.11 Aligned_cols=44 Identities=14% Similarity=0.088 Sum_probs=33.8
Q ss_pred CCCCcEEEEEEecccceeehhhhhhhhcccccceeeeceeeccccccCc
Q psy9172 24 GGPNTVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDELAGF 72 (80)
Q Consensus 24 ~~pn~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~~~~~ 72 (80)
..|+++|. |.|+-+-+|-+-|..+|+ +||.|.+ +.|..++--||
T Consensus 12 ~~p~~~l~--V~nLp~~~te~~L~~~F~-~fG~V~~--v~i~~~kg~aF 55 (104)
T 1wex_A 12 VSVSPVVH--VRGLCESVVEADLVEALE-KFGTICY--VMMMPFKRQAL 55 (104)
T ss_dssp CCCCSEEE--EESCCSSCCHHHHHHHHT-TTSCEEE--EEEETTTTEEE
T ss_pred CCCCCEEE--EeCCCCCCCHHHHHHHHH-hCCCEEE--EEEECCCCEEE
Confidence 45676655 579999999999999999 9999976 44455555555
No 29
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=93.48 E-value=0.11 Score=31.62 Aligned_cols=37 Identities=11% Similarity=0.049 Sum_probs=30.6
Q ss_pred CCcEEEEEEecccceeehhhhhhhhcccccceeeecee
Q psy9172 26 PNTVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLA 63 (80)
Q Consensus 26 pn~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a 63 (80)
+.+--+|.|.|+-+-+|-+-|..+|+ +||.|..-.+.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~~~i~ 48 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMR-EAGDVCYADVY 48 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHG-GGSCEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEeEEEEe
Confidence 34456788999999999999999999 99999765443
No 30
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=93.47 E-value=0.076 Score=31.68 Aligned_cols=34 Identities=9% Similarity=0.281 Sum_probs=27.9
Q ss_pred EEEEEEecccceeehhhhhhhhcccccceeeecee
Q psy9172 29 VLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLA 63 (80)
Q Consensus 29 VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a 63 (80)
--.|.|.|+-+-+|-+-|..+|+ +||.|.+-.+.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~ 48 (107)
T 2cph_A 15 TSKILVRNIPFQANQREIRELFS-TFGELKTVRLP 48 (107)
T ss_dssp CCCEEEESCCTTCCHHHHHHHHH-TTSCEEEEECC
T ss_pred CCEEEEeCCCCcCCHHHHHHHHH-ccCCeEEEEEe
Confidence 34566899999999999999999 99999754443
No 31
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=93.45 E-value=0.16 Score=31.58 Aligned_cols=56 Identities=18% Similarity=0.244 Sum_probs=37.9
Q ss_pred HHHHHHHHHhhhhhcCC----------CCCCCCCcEEEEEEecccceeehhhhhhhhcccccceeeece
Q psy9172 4 ASAQAALQAAQALTGQT----------DTQGGPNTVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL 62 (80)
Q Consensus 4 ~~aqaALqa~n~v~~~~----------~~~~~pn~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~ 62 (80)
..|+.|++.++.....+ .....++. .+.|.|+-+.+|-+-|..+|+ +||.|.+-.+
T Consensus 56 ~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~--~l~v~nl~~~~t~~~l~~~f~-~~G~i~~~~i 121 (168)
T 1b7f_A 56 MDSQRAIKVLNGITVRNKRLKVSYARPGGESIKDT--NLYVTNLPRTITDDQLDTIFG-KYGSIVQKNI 121 (168)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEECCCCSSTTTTC--EEEEESCCTTCCHHHHHHHHT-SSSCEEEEEE
T ss_pred HHHHHHHHhcCCCEeCCcEEEEEecCCCcccCCCC--CEEEeCCCCCCCHHHHHHhhh-cCCcEEEEEE
Confidence 46778887766321111 11122333 466889999999999999999 9999975444
No 32
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=93.34 E-value=0.12 Score=31.83 Aligned_cols=32 Identities=13% Similarity=0.258 Sum_probs=27.3
Q ss_pred EEEEecccceeehhhhhhhhcccccceeeecee
Q psy9172 31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLA 63 (80)
Q Consensus 31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a 63 (80)
.+.|.|+-+.+|-+-|.++|+ +||.|.+-.+.
T Consensus 90 ~l~v~nl~~~~t~~~l~~~f~-~~G~i~~~~i~ 121 (167)
T 1fxl_A 90 NLYVSGLPKTMTQKELEQLFS-QYGRIITSRIL 121 (167)
T ss_dssp EEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEE
T ss_pred cEEECCCCCcCCHHHHHHHHH-hcCCEeEEEEE
Confidence 467899999999999999999 99999764443
No 33
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.34 E-value=0.09 Score=31.74 Aligned_cols=31 Identities=16% Similarity=0.186 Sum_probs=27.1
Q ss_pred EEEEecccceeehhhhhhhhcccccceeeece
Q psy9172 31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL 62 (80)
Q Consensus 31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~ 62 (80)
.|.|.|+-+-+|-+-|..+|+ +||.|.+-.+
T Consensus 24 ~l~V~nLp~~~t~~~l~~~F~-~~G~v~~~~i 54 (109)
T 1x4a_A 24 RIYVGNLPPDIRTKDIEDVFY-KYGAIRDIDL 54 (109)
T ss_dssp EEEEESCCTTCCHHHHHHHHG-GGSCEEEEEE
T ss_pred EEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEE
Confidence 566889999999999999999 9999976555
No 34
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.33 E-value=0.069 Score=31.71 Aligned_cols=33 Identities=12% Similarity=0.186 Sum_probs=27.5
Q ss_pred EEEEEecccceeehhhhhhhhcccccceeeecee
Q psy9172 30 LRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLA 63 (80)
Q Consensus 30 LrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a 63 (80)
-.|.|.|+-+.+|-+-|..+|+ +||.|.+-.+.
T Consensus 13 ~~l~v~nLp~~~t~~~l~~~f~-~~G~i~~v~i~ 45 (102)
T 1x5s_A 13 GKLFVGGLSFDTNEQSLEQVFS-KYGQISEVVVV 45 (102)
T ss_dssp SEEEEESCCTTCCHHHHHHHHH-HHSCCCEEEEC
T ss_pred CEEEEECCCCCCCHHHHHHHHH-hcCCeEEEEEE
Confidence 3566899999999999999999 99999754443
No 35
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.31 E-value=0.071 Score=30.56 Aligned_cols=32 Identities=16% Similarity=0.116 Sum_probs=26.9
Q ss_pred EEEEEEecccceeehhhhhhhhcccccceeeec
Q psy9172 29 VLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTS 61 (80)
Q Consensus 29 VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~ 61 (80)
--.|-|.|+-+.+|-+-|..+|+ +||.|.+-.
T Consensus 12 ~~~l~V~~l~~~~t~~~l~~~f~-~~G~i~~~~ 43 (85)
T 2ytc_A 12 ITTLYVGGLGDTITETDLRNHFY-QFGEIRTIT 43 (85)
T ss_dssp CCCEEEECCTTTSCHHHHHHHHH-TTSCEEEEE
T ss_pred ccEEEEcCCCCCCCHHHHHHHHH-hCCCEeEEE
Confidence 34567899999999999999999 999986533
No 36
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.31 E-value=0.068 Score=31.13 Aligned_cols=33 Identities=15% Similarity=0.018 Sum_probs=27.1
Q ss_pred EEEEEecccceeehhhhhhhhcccccceeeecee
Q psy9172 30 LRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLA 63 (80)
Q Consensus 30 LrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a 63 (80)
-.|.|.|+-+.+|-+-|..+|+ +||.|.+-.+.
T Consensus 16 ~~l~v~nlp~~~t~~~l~~~f~-~~G~v~~v~i~ 48 (95)
T 2cqc_A 16 CCLGVFGLSLYTTERDLREVFS-KYGPIADVSIV 48 (95)
T ss_dssp GCEEEESCCSSCCHHHHHHHHH-TTSCEEEEEEE
T ss_pred CEEEEECCCCCCCHHHHHHHHH-hcCCeeEEEEE
Confidence 3456789999999999999999 99999754443
No 37
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=93.05 E-value=0.059 Score=33.98 Aligned_cols=37 Identities=14% Similarity=0.197 Sum_probs=31.1
Q ss_pred EEEEecccceeehhhhhhhhcccccceeeeceeecccc
Q psy9172 31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDE 68 (80)
Q Consensus 31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~ 68 (80)
.|-|.|+-|-+|-|-|..+|+ +||.|..-.+-+++|+
T Consensus 25 ~lfV~nL~~~~te~~L~~~F~-~~G~v~~~~v~i~~d~ 61 (131)
T 2m2b_A 25 TIILRNLNPHSTMDSILGALA-PYAVLSSSNVRVIKDK 61 (131)
T ss_dssp EEEECSCCTTCCSHHHHHHHG-GGCCCCTTTEECCBCS
T ss_pred EEEEeCCCCCCCHHHHHHHHH-HhCCcceeeEEEEEcC
Confidence 678999999999999999999 9999975445566665
No 38
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.04 E-value=0.11 Score=30.93 Aligned_cols=33 Identities=12% Similarity=0.165 Sum_probs=27.7
Q ss_pred EEEEEecccceeehhhhhhhhcccccceeeecee
Q psy9172 30 LRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLA 63 (80)
Q Consensus 30 LrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a 63 (80)
-.|-|.|+-+.+|-+-|..+|+ +||.|.+-.+.
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~ 48 (105)
T 1x5u_A 16 ATVYVGGLDEKVSEPLLWELFL-QAGPVVNTHMP 48 (105)
T ss_dssp TEEEEECCCTTCCHHHHHHHHH-TTSCEEEEECC
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEE
Confidence 3567889999999999999999 99999764443
No 39
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=93.00 E-value=0.078 Score=35.60 Aligned_cols=41 Identities=20% Similarity=0.368 Sum_probs=32.5
Q ss_pred EEEEecccceeehhhhhhhhcccccceeeeceeeccccccCc
Q psy9172 31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDELAGF 72 (80)
Q Consensus 31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~~~~~ 72 (80)
+|-|.|+-+.+|-+-|+++|+ +||.|.+-.+......+-||
T Consensus 105 ~l~v~nl~~~~t~~~l~~~F~-~~G~i~~~~i~~d~~~~~g~ 145 (213)
T 4f02_A 105 NIFIKNLDKSIDNKALYDTFS-AFGNILSCKVVCDENGSKGY 145 (213)
T ss_dssp EEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEEETTEEEEE
T ss_pred cceECCcccccHHHHHHHHHh-hcCCeEEEEeeccCCCCceE
Confidence 477899999999999999999 99999876665544444444
No 40
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.94 E-value=0.055 Score=32.16 Aligned_cols=38 Identities=11% Similarity=0.031 Sum_probs=30.9
Q ss_pred EEEEecccceeehhhhhhhhcccccceeeeceeeccccccCc
Q psy9172 31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDELAGF 72 (80)
Q Consensus 31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~~~~~ 72 (80)
+|.|.|+-+-+|-+-|..+|+ +||.|. +.+.++++.||
T Consensus 21 ~l~V~nL~~~~t~~~l~~~F~-~~G~v~---~~~~~~~~~g~ 58 (97)
T 2e5j_A 21 DVYVGNLPRDARVSDLKRALR-ELGSVP---LRLTWQGPRRR 58 (97)
T ss_dssp EEEEECCCTTCCHHHHHHHHH-HTTCCC---SEEEEETTTTE
T ss_pred EEEEeCCCCcCcHHHHHHHHH-hcCCEE---EEEEcCCCCcE
Confidence 677899999999999999999 999994 34445666665
No 41
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=92.94 E-value=0.07 Score=33.04 Aligned_cols=35 Identities=9% Similarity=0.136 Sum_probs=28.1
Q ss_pred EEEEecccceeehhhhhhhhcccccceeeeceeecccc
Q psy9172 31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDE 68 (80)
Q Consensus 31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~ 68 (80)
.|.|.|+-+-+|-+-|..+|+ +||.|.+ +-++..+
T Consensus 12 ~l~V~nLp~~~te~~L~~~F~-~~G~i~~--v~i~~~~ 46 (111)
T 1whx_A 12 VILAKNLPAGTLAAEIQETFS-RFGSLGR--VLLPEGG 46 (111)
T ss_dssp EEEEESCCTTCCHHHHHHHHH-TTSCEEE--EECCSSS
T ss_pred EEEEeCCCCCCCHHHHHHHHH-hcCCEEE--EEEeCCC
Confidence 467889999999999999999 9999965 3344433
No 42
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=92.87 E-value=0.1 Score=35.75 Aligned_cols=36 Identities=11% Similarity=0.188 Sum_probs=28.9
Q ss_pred CCCcEEEEEEeccc-ceeehhhhhhhhcccccceeeecee
Q psy9172 25 GPNTVLRVIIEHML-YPITLDVLYQFDNYKFGHAFSTSLA 63 (80)
Q Consensus 25 ~pn~VLrviIeN~~-YPVTldVLhqiFs~~fG~Vlrq~~a 63 (80)
+++++| -|-|+- +-||-|-|+.+|+ +||.|.+-++.
T Consensus 2 ~~~~~l--~V~nL~~~~~~~~~L~~~F~-~~G~v~~v~i~ 38 (205)
T 3tyt_A 2 ADSPVL--MVYGLDQSKMNCDRVFNVFC-LYGNVEKVKFM 38 (205)
T ss_dssp CCCSEE--EEECCCTTTCCHHHHHHHHT-TTSCEEEEEEC
T ss_pred CCCCEE--EEeCCCcccCCHHHHHHHHH-hcCCeEEEEEe
Confidence 456665 477998 7899999999999 99999865543
No 43
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=92.85 E-value=0.09 Score=31.42 Aligned_cols=38 Identities=21% Similarity=0.415 Sum_probs=29.9
Q ss_pred EEEEecccceeehhhhhhhhcccccceeeeceeeccccccCc
Q psy9172 31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDELAGF 72 (80)
Q Consensus 31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~~~~~ 72 (80)
.+-|-|+-|-+|-+-|..+|+ +||.|.+-. ++++ +-||
T Consensus 13 ~l~V~~Lp~~~te~~L~~~F~-~~G~i~~v~--i~~~-srGf 50 (89)
T 3d2w_A 13 KVFVGRCTEDMTAEELQQFFC-QYGEVVDVF--IPKP-FRAF 50 (89)
T ss_dssp EEEEESCCTTCCHHHHHHHHT-TTSCEEEEE--CCSS-CCSE
T ss_pred EEEEeCCCCCCCHHHHHHHHh-ccCCEEEEE--EeeC-CCCE
Confidence 456799999999999999999 999997644 3443 5555
No 44
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.82 E-value=0.11 Score=29.90 Aligned_cols=33 Identities=18% Similarity=0.163 Sum_probs=27.6
Q ss_pred EEEEecccceeehhhhhhhhcccccceeeeceee
Q psy9172 31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAM 64 (80)
Q Consensus 31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~ 64 (80)
.|.|.|+-+-+|-+-|..+|+ +||.|.+-.+..
T Consensus 7 ~l~v~nlp~~~t~~~l~~~f~-~~G~i~~~~i~~ 39 (85)
T 1x4e_A 7 GLYIRGLQPGTTDQDLVKLCQ-PYGKIVSTKAIL 39 (85)
T ss_dssp EEEEESCCTTCCHHHHHTTST-TTSCEEEEEEEC
T ss_pred EEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEe
Confidence 566899999999999999999 999997654433
No 45
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.81 E-value=0.099 Score=34.15 Aligned_cols=46 Identities=20% Similarity=0.324 Sum_probs=34.5
Q ss_pred CCCCCCcEEEEEEecccceeehhhhhhhhcccccceeeeceeeccccccCc
Q psy9172 22 TQGGPNTVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDELAGF 72 (80)
Q Consensus 22 ~~~~pn~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~~~~~ 72 (80)
....|+++|. |.|+-+-+|-+-|..+|+ +||.|.+-. +..++--||
T Consensus 26 ~~~~ps~~Lf--VgNLp~~vte~dL~~lF~-~fG~V~~v~--i~~~kG~AF 71 (119)
T 2ad9_A 26 SAGVPSRVIH--IRKLPIDVTEGEVISLGL-PFGKVTNLL--MLKGKNQAF 71 (119)
T ss_dssp SCSSCCSEEE--EESCCTTCCHHHHHHHHT-TTSCCCEEE--EEGGGTEEE
T ss_pred ccCCCCCEEE--EeCCCCCCCHHHHHHHHH-hcCCEEEEE--EeCCCCEEE
Confidence 3446677665 579999999999999999 999997544 445555555
No 46
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=92.79 E-value=0.092 Score=32.06 Aligned_cols=32 Identities=22% Similarity=0.243 Sum_probs=27.4
Q ss_pred EEEEecccceeehhhhhhhhcccccceeeecee
Q psy9172 31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLA 63 (80)
Q Consensus 31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a 63 (80)
++-|.|+=+-+|-+-|.++|+ +||.|.+=++.
T Consensus 21 ~lfV~nLp~~~te~~L~~~F~-~~G~I~~v~i~ 52 (99)
T 4fxv_A 21 NLIVNYLPQNMTQDELRSLFS-SIGEVESAKLI 52 (99)
T ss_dssp EEEEESCCTTCCHHHHHHHHH-TTSCEEEEEEE
T ss_pred EEEEeCCCCCCCHHHHHHHHH-hcCCEEEeEee
Confidence 478999999999999999999 99999754443
No 47
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.72 E-value=0.25 Score=29.46 Aligned_cols=37 Identities=14% Similarity=0.347 Sum_probs=29.3
Q ss_pred CcEEEEEEecccceeehhhhhhhhcccccceeeeceeeccc
Q psy9172 27 NTVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRD 67 (80)
Q Consensus 27 n~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~ 67 (80)
.+--.|-|.|+-+-+|-+-|..+|+ +|| |.+ +-++.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~-~~G-i~~--v~i~~~ 49 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFR-GLN-ISA--VRLPRE 49 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTT-TSC-EEE--EECCBC
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHH-HCC-ceE--EEEecC
Confidence 3446788999999999999999999 999 764 444444
No 48
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=92.70 E-value=0.12 Score=29.41 Aligned_cols=31 Identities=13% Similarity=0.074 Sum_probs=26.3
Q ss_pred EEEEecccceeehhhhhhhhcccccceeeece
Q psy9172 31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL 62 (80)
Q Consensus 31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~ 62 (80)
.|-|.|+-+-+|-+-|..+|+ +||.|.+-.+
T Consensus 9 ~l~V~nl~~~~~~~~l~~~f~-~~G~i~~v~i 39 (85)
T 3mdf_A 9 VLYVGGLAEEVDDKVLHAAFI-PFGDITDIQI 39 (85)
T ss_dssp EEEEECCCTTCCHHHHHHHHG-GGSCEEEEEC
T ss_pred EEEEECCCCCCCHHHHHHHHh-ccCCEEEEEE
Confidence 466889999999999999999 9999965443
No 49
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=92.70 E-value=0.1 Score=30.75 Aligned_cols=32 Identities=13% Similarity=0.202 Sum_probs=27.0
Q ss_pred EEEEEecccceeehhhhhhhhcccccceeeece
Q psy9172 30 LRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL 62 (80)
Q Consensus 30 LrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~ 62 (80)
-.|.|.|+-+-+|-+-|..+|+ +||.|.+-.+
T Consensus 9 ~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i 40 (99)
T 1whw_A 9 GRLFVRNLSYTSSEEDLEKLFS-AYGPLSELHY 40 (99)
T ss_dssp EEEEEECCCTTCCHHHHHHHHH-TTSCEEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-hcCCEeEEEE
Confidence 3577889999999999999999 9999965443
No 50
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=92.68 E-value=0.074 Score=33.61 Aligned_cols=44 Identities=16% Similarity=0.032 Sum_probs=32.9
Q ss_pred CCCCcEEEEEEecccc-eeehhhhhhhhcccccceeeeceeeccccccCc
Q psy9172 24 GGPNTVLRVIIEHMLY-PITLDVLYQFDNYKFGHAFSTSLAMPRDELAGF 72 (80)
Q Consensus 24 ~~pn~VLrviIeN~~Y-PVTldVLhqiFs~~fG~Vlrq~~a~~~~~~~~~ 72 (80)
..|+++| -|.|+-| -+|-+-|..+|+ +||.|.+=. +..++--||
T Consensus 12 ~~p~~~l--~V~nLp~~~~te~dL~~lF~-~fG~V~~v~--i~~~kg~aF 56 (102)
T 1x4d_A 12 VETRRVV--HIMDFQRGKNLRYQLLQLVE-PFGVISNHL--ILNKINEAF 56 (102)
T ss_dssp CCCCCEE--EEESCCCSSSHHHHHHTTTG-GGSCEEEEE--ECSSSSCEE
T ss_pred CCCCCEE--EEeCCCCCcCCHHHHHHHHH-hcCCEEEEE--EEcCCCEEE
Confidence 3566655 4789999 999999999999 999997544 344554444
No 51
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=92.63 E-value=0.12 Score=31.90 Aligned_cols=35 Identities=9% Similarity=0.063 Sum_probs=28.5
Q ss_pred EEEEEecccceeehhhhhhhhcccccceeeeceeeccc
Q psy9172 30 LRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRD 67 (80)
Q Consensus 30 LrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~ 67 (80)
-.|.|.|+-+.+|-+-|..+|+ +||.|.. +-++.+
T Consensus 23 ~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~--v~i~~~ 57 (126)
T 3ex7_B 23 WILFVTGVHEEATEEDIHDKFA-EYGEIKN--IHLNLD 57 (126)
T ss_dssp EEEEEESCCTTCCHHHHHHHHH-TTSCEEE--EECCBC
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-hcCCeEE--EEEEec
Confidence 3577899999999999999999 9999964 444444
No 52
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.60 E-value=0.19 Score=29.91 Aligned_cols=34 Identities=12% Similarity=0.045 Sum_probs=28.2
Q ss_pred cEEEEEEecccceeehhhhhhhhcccccceeeece
Q psy9172 28 TVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL 62 (80)
Q Consensus 28 ~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~ 62 (80)
+--.|.|.|+-+-+|-+-|..+|+ +||.|.+-.+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~f~-~~G~i~~v~i 47 (103)
T 2cq0_A 14 DNATIRVTNLSEDTRETDLQELFR-PFGSISRIYL 47 (103)
T ss_dssp SSEEEEEESCCTTCCHHHHHTTST-TTCCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH-hCCCeEEEEE
Confidence 345567889999999999999999 9999976444
No 53
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=92.56 E-value=0.12 Score=30.54 Aligned_cols=33 Identities=12% Similarity=0.235 Sum_probs=27.3
Q ss_pred EEEEecccceeehhhhhhhhcccccceeeeceee
Q psy9172 31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAM 64 (80)
Q Consensus 31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~ 64 (80)
.|.|.|+-+.+|-+-|..+|+ +||.|.+-.+..
T Consensus 4 ~l~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~ 36 (96)
T 2x1f_A 4 VVYLGSIPYDQTEEQILDLCS-NVGPVINLKMMF 36 (96)
T ss_dssp EEEEESCCTTCCHHHHHHHHH-TTSCEEEEECCB
T ss_pred EEEEECCCCCCCHHHHHHHHH-hcCCEEEEEEEe
Confidence 356789999999999999999 999997654443
No 54
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=92.48 E-value=0.13 Score=30.50 Aligned_cols=33 Identities=6% Similarity=0.133 Sum_probs=28.3
Q ss_pred CCcEEEEEEecccceeehhhhhhhhcccccceee
Q psy9172 26 PNTVLRVIIEHMLYPITLDVLYQFDNYKFGHAFS 59 (80)
Q Consensus 26 pn~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlr 59 (80)
|.+--.+-|.|+-+-+|-+-|..+|+ +||.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~ 42 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFK-QIGIIKT 42 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHT-TTSCBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-HhCCEee
Confidence 34445677899999999999999999 9999976
No 55
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=92.47 E-value=0.076 Score=29.83 Aligned_cols=31 Identities=13% Similarity=0.295 Sum_probs=26.3
Q ss_pred EEEEecccceeehhhhhhhhcccccceeeece
Q psy9172 31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL 62 (80)
Q Consensus 31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~ 62 (80)
+|-|.|+-+-+|-+-|..+|+ +||.|.+-.+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~-~~G~i~~v~i 31 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFE-QFGKVDDAML 31 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHH-TTSCCSEECC
T ss_pred CEEEecCCCCCCHHHHHHHHH-hcCCEEEEEE
Confidence 367889989999999999999 9999975443
No 56
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.44 E-value=0.14 Score=29.79 Aligned_cols=32 Identities=22% Similarity=0.281 Sum_probs=27.1
Q ss_pred EEEEecccceeehhhhhhhhcccccceeeecee
Q psy9172 31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLA 63 (80)
Q Consensus 31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a 63 (80)
.|.|.|+-+-+|-+-|..+|+ +||.|..-.+.
T Consensus 7 ~l~v~nlp~~~t~~~l~~~f~-~~G~v~~v~i~ 38 (95)
T 2dnz_A 7 GLYVGSLHFNITEDMLRGIFE-PFGKIDNIVLM 38 (95)
T ss_dssp EEEEESCCTTCCHHHHHHHHT-TTSCEEEEEEE
T ss_pred EEEEeCCCCCCCHHHHHHHHH-hcCCEeEEEEe
Confidence 566789999999999999999 99999754443
No 57
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=92.44 E-value=0.14 Score=29.44 Aligned_cols=32 Identities=13% Similarity=0.136 Sum_probs=27.0
Q ss_pred EEEEecccceeehhhhhhhhcccccceeeecee
Q psy9172 31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLA 63 (80)
Q Consensus 31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a 63 (80)
+|-|.|+-+-+|-+-|...|+ +||.|.+-.+.
T Consensus 8 ~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~ 39 (89)
T 3ucg_A 8 SIYVGNVDYGATAEELEAHFH-GCGSVNRVTIL 39 (89)
T ss_dssp EEEEESCCTTCCHHHHHHHHG-GGCCEEEEEEE
T ss_pred EEEEeCCCCCCCHHHHHHHHH-hCCCEEEEEEE
Confidence 467889989999999999999 99999754443
No 58
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=92.43 E-value=0.14 Score=30.71 Aligned_cols=34 Identities=15% Similarity=0.196 Sum_probs=27.8
Q ss_pred EEEEecccceeehhhhhhhhcccccceeeeceeeccc
Q psy9172 31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRD 67 (80)
Q Consensus 31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~ 67 (80)
.|.|.|+-+-+|-+-|..+|+ +||.|.. +-++.+
T Consensus 17 ~l~V~nLp~~~t~~~l~~~F~-~~G~i~~--v~i~~~ 50 (111)
T 1x4h_A 17 TVFIRNLSFDSEEEALGEVLQ-QFGDLKY--VRVVLH 50 (111)
T ss_dssp CEEEESCCTTCCHHHHHHHHH-TTSCEEE--EECCBC
T ss_pred EEEEECCCCCCCHHHHHHHHH-hcCCeEE--EEEEec
Confidence 467889999999999999999 9999964 444444
No 59
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.42 E-value=0.057 Score=34.76 Aligned_cols=40 Identities=15% Similarity=0.181 Sum_probs=30.9
Q ss_pred EEEEEecccceeehhhhhhhhcccccceeeeceeeccccccCc
Q psy9172 30 LRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDELAGF 72 (80)
Q Consensus 30 LrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~~~~~ 72 (80)
-.|-|.|+-+-+|-+-|..+|+ +||.|..-. +..++--||
T Consensus 17 ~~LfV~nLp~~vte~dL~~lF~-~fG~V~~v~--i~~~kGfaF 56 (105)
T 1sjq_A 17 RVIHIRKLPIDVTEGEVISLGL-PFGKVTNLL--MLKGKNQAF 56 (105)
T ss_dssp CEEEECSCCTTSCHHHHHHHHH-HHCCEEEEE--EETTTTEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEE--EEcCCCEEE
Confidence 3455799999999999999999 999997544 445554455
No 60
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.41 E-value=0.19 Score=29.66 Aligned_cols=32 Identities=13% Similarity=0.157 Sum_probs=26.9
Q ss_pred EEEEEecccceeehhhhhhhhcccccceeeece
Q psy9172 30 LRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL 62 (80)
Q Consensus 30 LrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~ 62 (80)
-.|-|.|+-+-+|-+-|..+|+ +||.|..-.+
T Consensus 11 ~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i 42 (99)
T 2dgs_A 11 NKIFVGGIPHNCGETELREYFK-KFGVVTEVVM 42 (99)
T ss_dssp CEEEEESCCSSCCHHHHHHHHS-SSSCEEEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEE
Confidence 3566889999999999999999 9999965443
No 61
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=92.37 E-value=0.13 Score=29.42 Aligned_cols=33 Identities=15% Similarity=0.263 Sum_probs=27.5
Q ss_pred EEEEecccceeehhhhhhhhcccccceeeeceee
Q psy9172 31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAM 64 (80)
Q Consensus 31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~ 64 (80)
+|-|.|+-+-+|-+-|..+|+ +||.|.+-.+..
T Consensus 6 ~l~V~nlp~~~t~~~l~~~F~-~~G~i~~~~i~~ 38 (88)
T 4a8x_A 6 KVHIGRLTRNVTKDHIMEIFS-TYGKIKMIDMPV 38 (88)
T ss_dssp EEEEECCCTTCCHHHHHHHHH-TTSCEEEEECCE
T ss_pred EEEEeCCCCCCCHHHHHHHHH-hCCCEEEEEEEe
Confidence 467899999999999999999 999997544433
No 62
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=92.33 E-value=0.087 Score=29.52 Aligned_cols=35 Identities=20% Similarity=0.327 Sum_probs=28.1
Q ss_pred EEEEecccceeehhhhhhhhcccccceeeeceeecccc
Q psy9172 31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDE 68 (80)
Q Consensus 31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~ 68 (80)
+|-|.|+-+.+|-+-|...|+ +||.|.+ +-++.++
T Consensus 2 ~l~v~nlp~~~t~~~l~~~F~-~~G~v~~--v~i~~~~ 36 (77)
T 1uaw_A 2 KMFIGGLSWQTTQEGLREYFG-QFGEVKE--CLVMRDP 36 (77)
T ss_dssp CEEEESCCSSCCSHHHHHHHT-TTSCCCC--EEEECCC
T ss_pred EEEEeCCCCCCCHHHHHHHHH-hcCCEEE--EEEecCC
Confidence 367899999999999999999 9999964 4444443
No 63
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=92.24 E-value=0.14 Score=29.84 Aligned_cols=34 Identities=15% Similarity=0.269 Sum_probs=28.0
Q ss_pred EEEEecccceeehhhhhhhhcccccceeeeceeeccc
Q psy9172 31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRD 67 (80)
Q Consensus 31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~ 67 (80)
.|.|.|+-+-+|-+-|..+|+ +||.|.+- -++.+
T Consensus 18 ~l~v~nlp~~~~~~~l~~~F~-~~G~i~~v--~i~~~ 51 (95)
T 2ywk_A 18 TVFVGNLEARVREEILYELFL-QAGPLTKV--TICKD 51 (95)
T ss_dssp EEEEECCCTTCCHHHHHHHHG-GGSCEEEE--EEEEC
T ss_pred EEEEECCCCCCCHHHHHHHHH-hcCCEEEE--EEEEC
Confidence 566889999999999999999 99999754 44444
No 64
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.22 E-value=0.11 Score=30.15 Aligned_cols=31 Identities=19% Similarity=0.297 Sum_probs=26.7
Q ss_pred EEEEecccceeehhhhhhhhcccccceeeece
Q psy9172 31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL 62 (80)
Q Consensus 31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~ 62 (80)
+|-|.|+-+-+|-|-|..+|+ +||.|..-.+
T Consensus 7 ~l~V~nLp~~~te~~l~~~F~-~~G~i~~v~i 37 (88)
T 1wf0_A 7 GVFVGRCTGDMTEDELREFFS-QYGDVMDVFI 37 (88)
T ss_dssp EEEEESCCSSSCHHHHHHHST-TTSCCCEEEC
T ss_pred EEEEeCCCCCCCHHHHHHHHH-HcCCeeEEEE
Confidence 466799999999999999999 9999975444
No 65
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.20 E-value=0.11 Score=30.85 Aligned_cols=34 Identities=18% Similarity=0.193 Sum_probs=27.8
Q ss_pred EEEEecccceeehhhhhhhhcccccceeeeceeeccc
Q psy9172 31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRD 67 (80)
Q Consensus 31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~ 67 (80)
.|-|.|+-+-+|-+-|..+|+ +||.|.+ +-++.+
T Consensus 14 ~l~V~nLp~~~t~~~l~~~f~-~~G~i~~--v~i~~~ 47 (102)
T 2cqb_A 14 VLYVGGLAEEVDDKVLHAAFI-PFGDITD--IQIPLD 47 (102)
T ss_dssp CEEEESCCSSCCHHHHHHHHT-TTSCCCC--EECCCC
T ss_pred EEEEeCCCCCCCHHHHHHHhh-ccCCEEE--EEEEec
Confidence 455789999999999999999 9999965 444444
No 66
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.15 E-value=0.17 Score=33.05 Aligned_cols=33 Identities=12% Similarity=0.140 Sum_probs=26.9
Q ss_pred CCCcEEEEEEecccceeehhh----hhhhhccccc-ceee
Q psy9172 25 GPNTVLRVIIEHMLYPITLDV----LYQFDNYKFG-HAFS 59 (80)
Q Consensus 25 ~pn~VLrviIeN~~YPVTldV----LhqiFs~~fG-~Vlr 59 (80)
.|+.-| +-|.|+-+-++.|. ||++|+ +|| .|+.
T Consensus 6 ~p~~T~-lYV~NL~~~~~~~~lk~~L~~lF~-~yGG~Vl~ 43 (96)
T 2diu_A 6 SGCHTL-LYVYNLPANKDGKSVSNRLRRLSD-NCGGKVLS 43 (96)
T ss_dssp CCSSEE-EEEESCCTTSCHHHHHHHHHHHHH-TTTCCEEE
T ss_pred CCcceE-EEEeCCCCcCCHHHHHHHHHHHHH-HcCCeeEE
Confidence 456555 66999999999998 789999 995 9963
No 67
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.14 E-value=0.18 Score=29.44 Aligned_cols=34 Identities=9% Similarity=0.099 Sum_probs=28.4
Q ss_pred cEEEEEEecccceeehhhhhhhhcccccceeeece
Q psy9172 28 TVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL 62 (80)
Q Consensus 28 ~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~ 62 (80)
+--.|.|.|+-+.+|-+-|..+|+ +||.|.+-.+
T Consensus 9 ~~~~l~V~nLp~~~t~~~l~~~F~-~~G~v~~v~~ 42 (92)
T 2dgt_A 9 ASTKLHVGNISPTCTNQELRAKFE-EYGPVIECDI 42 (92)
T ss_dssp SSEEEEEESCCSSCCHHHHHHHHH-TTSCCCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEE
Confidence 345677899999999999999999 9999975443
No 68
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.08 E-value=0.1 Score=30.56 Aligned_cols=29 Identities=24% Similarity=0.325 Sum_probs=25.7
Q ss_pred EEEEecccceeehhhhhhhhcccccceeee
Q psy9172 31 RVIIEHMLYPITLDVLYQFDNYKFGHAFST 60 (80)
Q Consensus 31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq 60 (80)
.|.|.|+-+-+|-+-|..+|+ +||.|.+-
T Consensus 7 ~l~V~nLp~~~t~~~l~~~F~-~~G~i~~~ 35 (96)
T 1x5t_A 7 GIFIGNLDPEIDEKLLYDTFS-AFGVILQT 35 (96)
T ss_dssp EEEEECCCTTCCHHHHHHHHH-TTSCBSSC
T ss_pred EEEEeCCCCCCCHHHHHHHHH-hcCCeeEE
Confidence 567889999999999999999 99999643
No 69
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=92.03 E-value=0.093 Score=31.04 Aligned_cols=35 Identities=14% Similarity=0.195 Sum_probs=28.0
Q ss_pred EEEEecccceeehhhhhhhhcccccceeeeceeecccc
Q psy9172 31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDE 68 (80)
Q Consensus 31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~ 68 (80)
+|-|.|+-+.+|-+-|.++|+ +||.|.+ +-+..++
T Consensus 19 ~l~V~nlp~~~t~~~l~~~F~-~~G~v~~--v~~~~~~ 53 (97)
T 1why_A 19 RLWVGGLGPNTSLAALAREFD-RFGSIRT--IDHVKGD 53 (97)
T ss_dssp CEEEECCCSSCCHHHHHHHHH-TTSCEEE--EEECSSS
T ss_pred EEEEeCCCCCCCHHHHHHHHH-hcCCeeE--EEEeCCC
Confidence 456789999999999999999 9999965 3444443
No 70
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=91.90 E-value=0.096 Score=33.63 Aligned_cols=32 Identities=16% Similarity=0.302 Sum_probs=27.2
Q ss_pred EEEEEecccceeehhhhhhhhcccccceeeece
Q psy9172 30 LRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL 62 (80)
Q Consensus 30 LrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~ 62 (80)
=.|-|.|+-+-+|-+-|..+|+ +||.|.+-.+
T Consensus 48 ~~l~V~nLp~~~te~~L~~~F~-~~G~i~~v~i 79 (135)
T 2lea_A 48 TSLKVDNLTYRTSPDTLRRVFE-KYGRVGDVYI 79 (135)
T ss_dssp CCEEEECCCSSCHHHHHHHHHG-GGSCCSEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEE
Confidence 3577899999999999999999 9999965443
No 71
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.90 E-value=0.24 Score=29.39 Aligned_cols=33 Identities=15% Similarity=0.341 Sum_probs=27.8
Q ss_pred EEEEEEecccceeehhhhhhhhcccccceeeece
Q psy9172 29 VLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL 62 (80)
Q Consensus 29 VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~ 62 (80)
--.|.|.|+-+-+|-+-|..+|+ +||.|.+-.+
T Consensus 13 ~~~l~V~nLp~~~t~~~l~~~f~-~~G~i~~v~i 45 (103)
T 2dnm_A 13 MITLKVDNLTYRTSPDSLRRVFE-KYGRVGDVYI 45 (103)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHT-TTSCEEEEEC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEE
Confidence 44677899999999999999999 9999975443
No 72
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.87 E-value=0.12 Score=30.03 Aligned_cols=31 Identities=19% Similarity=0.489 Sum_probs=26.0
Q ss_pred EEEEecccceeehhhhhhhhcccccceeeece
Q psy9172 31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL 62 (80)
Q Consensus 31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~ 62 (80)
.|.|.|+-+.+|-+-|..+|+ +||.|.+-.+
T Consensus 18 ~l~V~nlp~~~t~~~l~~~f~-~~G~v~~v~i 48 (94)
T 2e5h_A 18 TVYVSNLPFSLTNNDLYRIFS-KYGKVVKVTI 48 (94)
T ss_dssp SEEEESCCTTSCHHHHHHHTT-TTSCEEEEEE
T ss_pred EEEEECCCCCCCHHHHHHHHH-hcCCeEEEEE
Confidence 355789999999999999999 9999975443
No 73
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=91.87 E-value=0.25 Score=30.29 Aligned_cols=36 Identities=25% Similarity=0.327 Sum_probs=29.6
Q ss_pred CcEEEEEEecccceeehhhhhhhhcccccceeeecee
Q psy9172 27 NTVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLA 63 (80)
Q Consensus 27 n~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a 63 (80)
.+--+|-|.|+-+-+|-+-|..+|+ +||.|.+-.+.
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~-~~G~i~~v~i~ 59 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFE-PFGRIESIQLM 59 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHT-TTSCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEE
Confidence 3345788999999999999999999 99999754443
No 74
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=91.83 E-value=0.23 Score=30.62 Aligned_cols=37 Identities=19% Similarity=0.165 Sum_probs=29.8
Q ss_pred cEEEEEEecccceeehhhhhhhhcccccceeeeceeeccc
Q psy9172 28 TVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRD 67 (80)
Q Consensus 28 ~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~ 67 (80)
+--+|-|.|+-+-+|-+-|..+|+ +||.|.+ +-++.+
T Consensus 62 ~~~~l~v~nlp~~~~~~~l~~~f~-~~G~i~~--v~i~~~ 98 (140)
T 2ku7_A 62 TKRVLYVGGLAEEVDDKVLHAAFI-PFGDITD--IQIPLD 98 (140)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHHG-GGSCEEE--EECCCC
T ss_pred CCcEEEEEeCCCCCCHHHHHHHHH-hcCCEEE--EEEeec
Confidence 345677899999999999999999 9999975 444444
No 75
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=91.82 E-value=0.17 Score=28.69 Aligned_cols=32 Identities=9% Similarity=0.104 Sum_probs=27.4
Q ss_pred EEEEecccceeehhhhhhhhcccccceeeecee
Q psy9172 31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLA 63 (80)
Q Consensus 31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a 63 (80)
.|-|.|+-+-+|-+-|...|+ +||.|.+-.+.
T Consensus 3 ~l~V~nlp~~~t~~~l~~~f~-~~G~i~~~~i~ 34 (83)
T 3md1_A 3 NLFVGDLNVNVDDETLRNAFK-DFPSYLSGHVM 34 (83)
T ss_dssp EEEEECCCTTCCHHHHHHHHT-TSTTEEEEEEE
T ss_pred EEEEeCCCCCCCHHHHHHHHH-hcCCeeEEEEE
Confidence 577899999999999999999 99999765443
No 76
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=91.80 E-value=0.16 Score=30.26 Aligned_cols=32 Identities=6% Similarity=0.102 Sum_probs=26.9
Q ss_pred EEEEecccceeehhhhhhhhcccccceeeecee
Q psy9172 31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLA 63 (80)
Q Consensus 31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a 63 (80)
.|-|.|+-+.+|-+-|..+|+ +||.|.+-.+.
T Consensus 17 ~l~v~nLp~~~t~~~l~~~F~-~~G~i~~v~i~ 48 (105)
T 2dnh_A 17 KLFVGMLNKQQSEEDVLRLFQ-PFGVIDECTVL 48 (105)
T ss_dssp EEEEESCCTTCCHHHHHHHHT-TTSCEEEEEEE
T ss_pred EEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEE
Confidence 466899999999999999999 99999754443
No 77
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.75 E-value=0.18 Score=30.56 Aligned_cols=32 Identities=16% Similarity=0.115 Sum_probs=27.5
Q ss_pred EEEEecccceeehhhhhhhhcccccceeeecee
Q psy9172 31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLA 63 (80)
Q Consensus 31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a 63 (80)
.|-|.|+-+-+|-+-|..+|+ +||.|..-.+.
T Consensus 27 ~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~ 58 (114)
T 2cq4_A 27 TVFCMQLAARIRPRDLEDFFS-AVGKVRDVRII 58 (114)
T ss_dssp EEEEESCCTTCCHHHHHHHHT-TTSCEEEEEEC
T ss_pred EEEEeCCCCCCCHHHHHHHHH-hCCCEeEEEEE
Confidence 577899999999999999999 99999754443
No 78
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=91.75 E-value=0.19 Score=29.97 Aligned_cols=35 Identities=11% Similarity=0.298 Sum_probs=28.8
Q ss_pred CcEEEEEEecccceeehhhhhhhhcccccceeeece
Q psy9172 27 NTVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL 62 (80)
Q Consensus 27 n~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~ 62 (80)
.+--+|-|.|+-+.+|-+-|..+|+ +||.|..-.+
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i 45 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFE-EFGKIYELTV 45 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHH-HHSCCCEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeeEEEE
Confidence 3445678899999999999999999 9999965433
No 79
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=91.69 E-value=0.13 Score=31.36 Aligned_cols=33 Identities=21% Similarity=0.239 Sum_probs=28.0
Q ss_pred EEEEecccceeehhhhhhhhcccccceeeeceee
Q psy9172 31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAM 64 (80)
Q Consensus 31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~ 64 (80)
.|.|.|+-+-+|-+-|..+|+ +||.|.+-++..
T Consensus 27 ~l~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~ 59 (115)
T 2cpz_A 27 NLFIYHLPQEFGDQDLLQMFM-PFGNVVSAKVFI 59 (115)
T ss_dssp CEEEESCCSSCCHHHHHHHHG-GGSCCSEEEEEE
T ss_pred EEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEE
Confidence 567899999999999999999 999997655443
No 80
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=91.63 E-value=0.19 Score=30.25 Aligned_cols=32 Identities=9% Similarity=0.053 Sum_probs=27.3
Q ss_pred EEEEEecccceeehhhhhhhhcccccceeeece
Q psy9172 30 LRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL 62 (80)
Q Consensus 30 LrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~ 62 (80)
-.|.|.|+-+-+|-+-|..+|+ +||.|.+-.+
T Consensus 27 ~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i 58 (110)
T 1oo0_B 27 WILFVTSIHEEAQEDEIQEKFC-DYGEIKNIHL 58 (110)
T ss_dssp EEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEE
Confidence 4567899999999999999999 9999975444
No 81
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=91.61 E-value=0.11 Score=32.16 Aligned_cols=33 Identities=12% Similarity=0.068 Sum_probs=27.9
Q ss_pred EEEEEEecccceeehhhhhhhhcccccceeeece
Q psy9172 29 VLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL 62 (80)
Q Consensus 29 VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~ 62 (80)
--+|.|.|+-|.+|-+-|..+|+ +||.|..-.+
T Consensus 16 ~~~l~V~nLp~~~t~~~l~~~F~-~~G~v~~~~i 48 (115)
T 3beg_B 16 ENRVVVSGLPPSGSWQDLKDHMR-EAGDVCYADV 48 (115)
T ss_dssp -CCEEEEECCSSCCTTHHHHHHG-GGSCEEEEEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEE
Confidence 35688999999999999999999 9999975444
No 82
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.57 E-value=0.13 Score=30.73 Aligned_cols=37 Identities=8% Similarity=0.295 Sum_probs=29.9
Q ss_pred CCcEEEEEEecccceeehhhhhhhhcccccceeeecee
Q psy9172 26 PNTVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLA 63 (80)
Q Consensus 26 pn~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a 63 (80)
+.+--+|-|.|+-+-+|-+-|..+|+ +||.|.+-.+.
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~v~~v~i~ 49 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFS-QYGEVVDCVIM 49 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHH-TTSCEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEe
Confidence 33445678899999999999999999 99999764443
No 83
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.54 E-value=0.17 Score=30.11 Aligned_cols=32 Identities=16% Similarity=0.283 Sum_probs=27.1
Q ss_pred EEEEecccceeehhhhhhhhcccccceeeecee
Q psy9172 31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLA 63 (80)
Q Consensus 31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a 63 (80)
.|-|.|+-+.+|-+-|..+|+ +||.|.+-.+.
T Consensus 17 ~l~v~nlp~~~t~~~l~~~F~-~~G~i~~v~i~ 48 (103)
T 2cqg_A 17 DLIVLGLPWKTTEQDLKEYFS-TFGEVLMVQVK 48 (103)
T ss_dssp CEEEESCCSSCCHHHHHHHHG-GGSCEEEEEEE
T ss_pred EEEEEcCCCcCCHHHHHHHHH-hcCCeEEEEEE
Confidence 467899999999999999999 99999754443
No 84
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=91.53 E-value=0.15 Score=31.34 Aligned_cols=31 Identities=16% Similarity=0.303 Sum_probs=26.7
Q ss_pred EEEEecccceeehhhhhhhhcccccceeeece
Q psy9172 31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL 62 (80)
Q Consensus 31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~ 62 (80)
.|-|.|+-+-+|-+-|..+|+ +||.|.+-.+
T Consensus 27 ~lfV~nLp~~~te~~L~~~F~-~~G~i~~v~i 57 (109)
T 2rs2_A 27 KMFIGGLSWQTTQEGLREYFG-QFGEVKECLV 57 (109)
T ss_dssp CEEEESCCTTCCHHHHHHHHT-TTSCEEEEEE
T ss_pred EEEEeCCCCCCCHHHHHHHHH-ccCCeEEEEE
Confidence 567899999999999999999 9999975443
No 85
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.32 E-value=0.19 Score=30.57 Aligned_cols=32 Identities=13% Similarity=0.283 Sum_probs=27.3
Q ss_pred EEEEEecccceeehhhhhhhhcccccceeeece
Q psy9172 30 LRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL 62 (80)
Q Consensus 30 LrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~ 62 (80)
-.|-|.|+-+-+|-+-|..+|+ +||.|.+-.+
T Consensus 28 ~~l~V~nLp~~~te~~l~~~F~-~~G~i~~v~i 59 (116)
T 1x4b_A 28 RKLFIGGLSFETTEESLRNYYE-QWGKLTDCVV 59 (116)
T ss_dssp TEEEEECCTTCCCHHHHHHHHT-SSCCCSEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEE
Confidence 4577899999999999999999 9999965443
No 86
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.31 E-value=0.12 Score=30.58 Aligned_cols=33 Identities=21% Similarity=0.266 Sum_probs=27.6
Q ss_pred EEEEecccceeehhhhhhhhcccccceeeeceee
Q psy9172 31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAM 64 (80)
Q Consensus 31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~ 64 (80)
.|.|.|+-+.+|-+-|..+|+ +||.|.+-.+..
T Consensus 10 ~l~V~nlp~~~~~~~l~~~f~-~~G~i~~~~i~~ 42 (104)
T 1p1t_A 10 SVFVGNIPYEATEEQLKDIFS-EVGPVVSFRLVY 42 (104)
T ss_dssp CEEEESCCTTSCHHHHHHHHH-TTSCCSEEEEEE
T ss_pred EEEEeCCCCcCCHHHHHHHHH-hcCCeeEEEEEe
Confidence 467889999999999999999 999997654443
No 87
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=91.18 E-value=0.17 Score=31.04 Aligned_cols=31 Identities=16% Similarity=0.110 Sum_probs=26.9
Q ss_pred EEEEecccceeehhhhhhhhcccccceeeece
Q psy9172 31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL 62 (80)
Q Consensus 31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~ 62 (80)
.|-|.|+-+-+|-+-|..+|+ +||.|.+-.+
T Consensus 38 ~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i 68 (124)
T 2jwn_A 38 SVYVGNVDYGSTAQDLEAHFS-SCGSINRITI 68 (124)
T ss_dssp EEEEEEECTTCCHHHHHHHHH-TTSCEEEEEE
T ss_pred EEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEE
Confidence 577899999999999999999 9999975443
No 88
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.16 E-value=0.27 Score=29.18 Aligned_cols=34 Identities=18% Similarity=0.181 Sum_probs=28.6
Q ss_pred EEEEEEecccceeehhhhh----hhhcccccceeeecee
Q psy9172 29 VLRVIIEHMLYPITLDVLY----QFDNYKFGHAFSTSLA 63 (80)
Q Consensus 29 VLrviIeN~~YPVTldVLh----qiFs~~fG~Vlrq~~a 63 (80)
--+|-|.|+-+.+|-+-|. .+|+ +||.|.+-.+.
T Consensus 9 ~~~l~V~nL~~~~~~~~l~~~l~~~F~-~~G~v~~v~i~ 46 (96)
T 2dgx_A 9 GADVQVSNIDYRLSRKELQQLLQEAFA-RHGKVKSVELS 46 (96)
T ss_dssp CEEEEEESCCTTSCHHHHHHHHHHHHH-HHSCEEEEEEC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhcc-ccCcEEEEEEE
Confidence 3578899999999999999 9999 99999754443
No 89
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=91.15 E-value=0.16 Score=31.83 Aligned_cols=33 Identities=15% Similarity=0.162 Sum_probs=27.3
Q ss_pred EEEEEecccceeehhhhhhhhcccccceeeecee
Q psy9172 30 LRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLA 63 (80)
Q Consensus 30 LrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a 63 (80)
-.+.|.|+-+.+|-+-|.++|+ +||.|.+-.+.
T Consensus 95 ~~l~v~nlp~~~t~~~l~~~f~-~~G~v~~v~i~ 127 (172)
T 2g4b_A 95 HKLFIGGLPNYLNDDQVKELLT-SFGPLKAFNLV 127 (172)
T ss_dssp TCEEEECCCTTCCHHHHHHHHH-TTSCEEEEEEE
T ss_pred CEEEEEcCCCcCCHHHHHHHHH-hcCCceEEEEE
Confidence 3466889999999999999999 99999654443
No 90
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.97 E-value=0.22 Score=30.25 Aligned_cols=33 Identities=15% Similarity=0.257 Sum_probs=27.6
Q ss_pred EEEEEEecccceeehhhhhhhhcccccceeeece
Q psy9172 29 VLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL 62 (80)
Q Consensus 29 VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~ 62 (80)
--.|-|.|+-+-+|-+-|..+|+ +||.|..-.+
T Consensus 17 ~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i 49 (116)
T 2cqd_A 17 FTKIFVGGLPYHTTDASLRKYFE-GFGDIEEAVV 49 (116)
T ss_dssp SSEEEEECCCSSCCHHHHHHHHH-TTSCEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hCCCeeEEEE
Confidence 34567899999999999999999 9999965443
No 91
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=90.92 E-value=0.2 Score=32.68 Aligned_cols=31 Identities=10% Similarity=0.062 Sum_probs=26.7
Q ss_pred EEEEecccceeehhhhhhhhcccccceeeece
Q psy9172 31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL 62 (80)
Q Consensus 31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~ 62 (80)
.|.|.|+-+-+|-+-|..+|+ +||.|..-.+
T Consensus 74 ~l~V~nLp~~~t~~~L~~~F~-~~G~i~~v~i 104 (165)
T 1rk8_A 74 ILFVTSIHEEAQEDEIQEKFC-DYGEIKNIHL 104 (165)
T ss_dssp EEEEESCCTTCCHHHHHHHHG-GGSCEEEEEE
T ss_pred EEEEeCCCCCCCHHHHHHHhh-cCCCEEEEEE
Confidence 567889999999999999999 9999965443
No 92
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=90.92 E-value=0.14 Score=31.97 Aligned_cols=35 Identities=11% Similarity=0.159 Sum_probs=28.9
Q ss_pred EEEEEEecccceeehhhhhhhhcccccceeeeceee
Q psy9172 29 VLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAM 64 (80)
Q Consensus 29 VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~ 64 (80)
.=.|-|.|+-+-+|-+-|..+|+ +||.|.+-.+..
T Consensus 42 ~~~l~V~nLp~~~~~~~l~~~F~-~~G~i~~v~i~~ 76 (139)
T 1u6f_A 42 LRNLMVNYIPTTVDEVQLRQLFE-RYGPIESVKIVC 76 (139)
T ss_dssp TSEEEEESCSTTCCHHHHHHHHH-HHSCEEEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEE
Confidence 34577899999999999999999 999997654443
No 93
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.88 E-value=0.2 Score=29.67 Aligned_cols=31 Identities=16% Similarity=0.234 Sum_probs=26.3
Q ss_pred EEEEecccceeehhhhhhhhcccccceeeece
Q psy9172 31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL 62 (80)
Q Consensus 31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~ 62 (80)
.|.|.|+-+.+|-+-|..+|+ +||.|.+-.+
T Consensus 19 ~l~v~nlp~~~t~~~l~~~F~-~~G~i~~v~i 49 (100)
T 2do4_A 19 KLFISGLPFSCTKEELEEICK-AHGTVKDLRL 49 (100)
T ss_dssp CEEEESCCTTCCHHHHHHHHT-TTSCEEEEEE
T ss_pred EEEEeCCCCCCCHHHHHHHHH-hCCCeEEEEE
Confidence 466789999999999999999 9999965443
No 94
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.82 E-value=0.21 Score=30.18 Aligned_cols=32 Identities=19% Similarity=0.295 Sum_probs=27.3
Q ss_pred EEEEecccceeehhhhhhhhcccccceeeecee
Q psy9172 31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLA 63 (80)
Q Consensus 31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a 63 (80)
+|.|.|+-+-+|-+-|..+|+ +||.|.+-.+.
T Consensus 27 ~l~V~nlp~~~t~~~l~~~F~-~~G~i~~~~i~ 58 (114)
T 1x5o_A 27 NLYISNLPLSMDEQELENMLK-PFGQVISTRIL 58 (114)
T ss_dssp EEEEESCCTTCCHHHHHHTTT-TTSCEEEEEEE
T ss_pred EEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEE
Confidence 567899999999999999999 99999764443
No 95
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.76 E-value=0.23 Score=29.96 Aligned_cols=31 Identities=13% Similarity=0.211 Sum_probs=26.5
Q ss_pred EEEEecccceeehhhhhhhhcccccceeeece
Q psy9172 31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL 62 (80)
Q Consensus 31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~ 62 (80)
+|.|.|+-+-+|-+-|..+|+ +||.|.+-.+
T Consensus 17 ~l~V~nlp~~~~~~~l~~~f~-~~G~i~~~~i 47 (114)
T 2do0_A 17 TVFVANLDYKVGWKKLKEVFS-MAGVVVRADI 47 (114)
T ss_dssp CEEEESCCTTCCHHHHHHHHT-TTSCEEEEEE
T ss_pred EEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEE
Confidence 466889999999999999999 9999975443
No 96
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=90.69 E-value=0.21 Score=32.37 Aligned_cols=33 Identities=21% Similarity=0.259 Sum_probs=28.2
Q ss_pred EEEEecccceeehhhhhhhhcccccceeeeceee
Q psy9172 31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAM 64 (80)
Q Consensus 31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~ 64 (80)
.|.|.|+-+.+|-+-|.++|+ +||.|.+-.+..
T Consensus 127 ~l~v~nlp~~~t~~~l~~~f~-~~G~v~~v~i~~ 159 (216)
T 2qfj_A 127 RIYVASVHQDLSDDDIKSVFE-AFGKIKSATLAR 159 (216)
T ss_dssp EEEEECCCTTCCHHHHHHHHT-TSSCEEEEEEEE
T ss_pred EEEEeCCCCcCCHHHHHHHHh-ccCCeeEEEEEe
Confidence 567899999999999999999 999997655544
No 97
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=90.64 E-value=0.16 Score=30.05 Aligned_cols=39 Identities=23% Similarity=0.364 Sum_probs=29.5
Q ss_pred EEEEecccceeehhhhhhhhcccccceeeeceeeccccccCc
Q psy9172 31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDELAGF 72 (80)
Q Consensus 31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~~~~~ 72 (80)
.|-|.|+-+.+|-+-|..+|+ +||.|.+ +-++.++--||
T Consensus 17 ~l~V~nlp~~~t~~~l~~~F~-~~G~i~~--v~~~~~kg~af 55 (99)
T 2cpj_A 17 RLFVGNLPPDITEEEMRKLFE-KYGKAGE--VFIHKDKGFGF 55 (99)
T ss_dssp EEEEESCCTTCCHHHHHHHTS-TTCCCSE--EEEETTTTEEE
T ss_pred EEEEeCCCCCCCHHHHHHHHh-hcCCeEE--EEEecCCCEEE
Confidence 466789999999999999999 9999964 44444443333
No 98
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=90.62 E-value=0.25 Score=29.28 Aligned_cols=36 Identities=11% Similarity=0.145 Sum_probs=29.1
Q ss_pred EEEEEecccceeehhhhhhhhcccccceeeeceeecccc
Q psy9172 30 LRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDE 68 (80)
Q Consensus 30 LrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~ 68 (80)
=+|-|.|+-+-+|-+-|..+|+ +||.|.+- -++.++
T Consensus 10 ~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~v--~i~~~~ 45 (102)
T 2xs2_A 10 NTVFVGGIDVRMDETEIRSFFA-RYGSVKEV--KIITDR 45 (102)
T ss_dssp EEEEEECCCTTCCHHHHHHHHG-GGSCEEEE--EEEECT
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-hCCCeEEE--EEEECC
Confidence 3677899999999999999999 99999654 444443
No 99
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=90.55 E-value=0.11 Score=30.20 Aligned_cols=31 Identities=19% Similarity=0.510 Sum_probs=26.7
Q ss_pred EEEEecccceeehhhhhhhhcccccceeeece
Q psy9172 31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL 62 (80)
Q Consensus 31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~ 62 (80)
+|-|.|+-+-+|-+-|..+|+ +||.|.+-.+
T Consensus 3 ~l~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i 33 (90)
T 2ki2_A 3 NIYVGNLVYSATSEQVKELFS-QFGKVFNVKL 33 (90)
T ss_dssp EEEEEEECTTSSHHHHTTTHH-HHTCCSEEEE
T ss_pred EEEECCCCCCCCHHHHHHHHH-hcCCEEEEEE
Confidence 477899989999999999999 9999975443
No 100
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=90.54 E-value=0.2 Score=29.66 Aligned_cols=32 Identities=16% Similarity=0.059 Sum_probs=27.2
Q ss_pred EEEEEecccceeehhhhhhhhcccccceeeece
Q psy9172 30 LRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL 62 (80)
Q Consensus 30 LrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~ 62 (80)
-.|-|.|+-+-+|-+-|..+|+ +||.|.+-.+
T Consensus 28 ~~l~V~nlp~~~~~~~l~~~f~-~~G~i~~~~~ 59 (101)
T 2la4_A 28 TTAYIGNIPHFATEADLIPLFQ-NFGFILDFKH 59 (101)
T ss_dssp CEEEEESCCTTCCHHHHHHHHH-TTSCCSEEEE
T ss_pred CEEEEcCCCcccCHHHHHHHHH-hCCCEEEEEE
Confidence 3567899999999999999999 9999975443
No 101
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.51 E-value=0.27 Score=30.18 Aligned_cols=44 Identities=25% Similarity=0.246 Sum_probs=30.1
Q ss_pred CCCCcEEEEEEecccceee-----------hhhhhhhhcccccceeeeceeeccccccCc
Q psy9172 24 GGPNTVLRVIIEHMLYPIT-----------LDVLYQFDNYKFGHAFSTSLAMPRDELAGF 72 (80)
Q Consensus 24 ~~pn~VLrviIeN~~YPVT-----------ldVLhqiFs~~fG~Vlrq~~a~~~~~~~~~ 72 (80)
..|+++ |.|.||+.|.. -|-|...|+ +||.|.+-. |+..++-||
T Consensus 12 ~~~s~~--l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~-~~G~v~~v~--i~~~~~~G~ 66 (112)
T 2dit_A 12 MRHERV--VIIKNMFHPMDFEDDPLVLNEIREDLRVECS-KFGQIRKLL--LFDRHPDGV 66 (112)
T ss_dssp CCSCCE--EEEESSCCTTHHHHCSHHHHHHHHHHHHHGG-GTSCCSEEE--EETTCTTCE
T ss_pred CCCceE--EEEEcCCCHHHhccCHHHHHHHHHHHHHHHH-ccCCEeEEE--EecCCCCEE
Confidence 345666 55789977765 368999999 999998653 333345565
No 102
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=90.50 E-value=0.23 Score=31.74 Aligned_cols=34 Identities=6% Similarity=0.113 Sum_probs=28.7
Q ss_pred EEEEEecccceeehhhhhhhhcccccceeeeceee
Q psy9172 30 LRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAM 64 (80)
Q Consensus 30 LrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~ 64 (80)
-.|.|.|+-+-+|-+-|.++|+ +||.|.+-.+..
T Consensus 105 ~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~ 138 (196)
T 1l3k_A 105 KKIFVGGIKEDTEEHHLRDYFE-QYGKIEVIEIMT 138 (196)
T ss_dssp SEEEEECCTTTCCHHHHHHHHT-TTSCEEEEEEEE
T ss_pred ceEEEeCCCCCCCHHHHHHHHh-cCCCeEEEEEee
Confidence 4677899999999999999999 999997655443
No 103
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=90.35 E-value=0.12 Score=28.88 Aligned_cols=33 Identities=15% Similarity=0.278 Sum_probs=27.0
Q ss_pred EEEecccceeehhhhhhhhcccccceeeeceeeccc
Q psy9172 32 VIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRD 67 (80)
Q Consensus 32 viIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~ 67 (80)
|-|.|+-+.+|-+-|...|+ +||.|.+- -++.+
T Consensus 2 l~v~nLp~~~t~~~l~~~F~-~~G~i~~v--~i~~~ 34 (75)
T 1iqt_A 2 IFVGGLSPDTPEEKIREYFG-GFGEVESI--ELPMD 34 (75)
T ss_dssp EEESCCCSSCCHHHHHHHHH-HHSCCSEE--CCCCS
T ss_pred EEEeCCCCCCCHHHHHHHHH-hcCCeEEE--EEEec
Confidence 56889989999999999999 99999643 44444
No 104
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.22 E-value=0.16 Score=30.65 Aligned_cols=27 Identities=11% Similarity=0.080 Sum_probs=24.4
Q ss_pred EEEEecccceeehhhhhhhhccccccee
Q psy9172 31 RVIIEHMLYPITLDVLYQFDNYKFGHAF 58 (80)
Q Consensus 31 rviIeN~~YPVTldVLhqiFs~~fG~Vl 58 (80)
.|-|.|+-+-+|-+-|..+|+ +||.|.
T Consensus 27 ~l~V~nLp~~~t~~~l~~~f~-~~G~v~ 53 (115)
T 2cpx_A 27 VLYLKNLSPRVTERDLVSLFA-RFQEKK 53 (115)
T ss_dssp EEEEECCCTTCCHHHHHHHTH-HHHHSS
T ss_pred EEEEeCCCCCCCHHHHHHHHH-HhCCcc
Confidence 566889999999999999999 999983
No 105
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=90.20 E-value=0.17 Score=31.57 Aligned_cols=32 Identities=9% Similarity=0.229 Sum_probs=27.4
Q ss_pred EEEEecccceeehhhhhhhhcccccceeeecee
Q psy9172 31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLA 63 (80)
Q Consensus 31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a 63 (80)
.+.|.|+-+.+|-+-|.++|+ +||.|.+-.+.
T Consensus 89 ~l~V~nlp~~~t~~~l~~~F~-~~G~i~~~~i~ 120 (167)
T 2cjk_A 89 KIFVGGIGPDVRPKEFEEFFS-QWGTIIDAQLM 120 (167)
T ss_dssp EEEEEEECTTCCHHHHHHHHH-TTSCCSEEECC
T ss_pred eEEECCCCCCCCHHHHHHHHH-hCccEEEEEEE
Confidence 577899999999999999999 99999754443
No 106
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=90.15 E-value=0.14 Score=30.02 Aligned_cols=32 Identities=13% Similarity=0.134 Sum_probs=25.8
Q ss_pred EEEEecccceeehhhhhhhhccccc--ceeeecee
Q psy9172 31 RVIIEHMLYPITLDVLYQFDNYKFG--HAFSTSLA 63 (80)
Q Consensus 31 rviIeN~~YPVTldVLhqiFs~~fG--~Vlrq~~a 63 (80)
.|-|.|+-+-+|-+-|..+|+ +|| .|.+-.+.
T Consensus 3 ~l~V~nL~~~~t~~~l~~~F~-~~G~~~v~~v~i~ 36 (90)
T 3p5t_L 3 ALYIGNLTWWTTDEDLTEAVH-SLGVNDILEIKFF 36 (90)
T ss_dssp -CEEESCCTTCCHHHHHHHHH-TTTCCCCCCEEEE
T ss_pred EEEEeCCCCCCCHHHHHHHHH-HhCCCceEEEEEE
Confidence 467889999999999999999 999 77544443
No 107
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=90.09 E-value=0.18 Score=29.86 Aligned_cols=34 Identities=12% Similarity=0.085 Sum_probs=27.8
Q ss_pred EEEEecccceeehhhhhhhhcccccceeeeceeeccc
Q psy9172 31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRD 67 (80)
Q Consensus 31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~ 67 (80)
+|-|.|+-+-+|-+-|..+|+ +||.|.+ +-++.+
T Consensus 2 ~l~V~nLp~~~t~~~l~~~F~-~~G~i~~--v~i~~~ 35 (101)
T 2hvz_A 2 KVYVGNLGTGAGKGELERAFS-YYGPLRT--VWIARN 35 (101)
T ss_dssp EEEEECCCSSCSHHHHHHHHH-HHCCCSE--EEEESS
T ss_pred EEEEeCCCCCCCHHHHHHHHH-hcCCeEE--EEEeeC
Confidence 467899999999999999999 9999964 444444
No 108
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=90.06 E-value=0.27 Score=31.47 Aligned_cols=35 Identities=17% Similarity=0.261 Sum_probs=28.6
Q ss_pred EEEEEecccceeehhhhhhhhcccccceeeeceeeccc
Q psy9172 30 LRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRD 67 (80)
Q Consensus 30 LrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~ 67 (80)
-.|.|.|+-+-+|-+-|..+|+ +||.|.+ +-++.+
T Consensus 40 ~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~--v~i~~~ 74 (156)
T 1h2v_Z 40 CTLYVGNLSFYTTEEQIYELFS-KSGDIKK--IIMGLD 74 (156)
T ss_dssp CEEEEESCCTTCCHHHHHHHHG-GGSCEEE--EEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-hcCCeEE--EEEEec
Confidence 4567889999999999999999 9999975 444444
No 109
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.01 E-value=0.2 Score=29.99 Aligned_cols=30 Identities=10% Similarity=0.019 Sum_probs=26.0
Q ss_pred EEEEecccceeehhhhhhhhcccccc-eeeec
Q psy9172 31 RVIIEHMLYPITLDVLYQFDNYKFGH-AFSTS 61 (80)
Q Consensus 31 rviIeN~~YPVTldVLhqiFs~~fG~-Vlrq~ 61 (80)
+|-|.|+-+.+|-+-|..+|+ +||. |..-.
T Consensus 10 ~l~V~nLp~~~t~~~l~~~f~-~~G~~v~~v~ 40 (109)
T 2dis_A 10 RLFIGGIPKMKKREEILEEIA-KVTEGVLDVI 40 (109)
T ss_dssp EEEEECCCTTSCHHHHHHHHH-HHSTTEEEEE
T ss_pred EEEEeCCCCcCCHHHHHHHHH-HhcCCceEEE
Confidence 577899999999999999999 9998 76543
No 110
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=89.97 E-value=0.29 Score=31.26 Aligned_cols=34 Identities=15% Similarity=0.171 Sum_probs=28.6
Q ss_pred cEEEEEEecccceeehhhhhhhhcccccceeeece
Q psy9172 28 TVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL 62 (80)
Q Consensus 28 ~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~ 62 (80)
+--.|.|.|+-+.+|-+-|..+|+ +||.|.+-.+
T Consensus 113 ~~~~l~v~nl~~~~~~~~l~~~f~-~~G~v~~~~~ 146 (198)
T 2yh0_A 113 SAHKLFIGGLPNYLNDDQVKELLT-SFGPLKAFNL 146 (198)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHH-TBSCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH-HcCCccEEEE
Confidence 446778899999999999999999 9999965444
No 111
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.93 E-value=0.15 Score=31.39 Aligned_cols=27 Identities=19% Similarity=0.205 Sum_probs=25.0
Q ss_pred EEEEecccceeehhhhhhhhccccccee
Q psy9172 31 RVIIEHMLYPITLDVLYQFDNYKFGHAF 58 (80)
Q Consensus 31 rviIeN~~YPVTldVLhqiFs~~fG~Vl 58 (80)
+|-|.|+-+-+|-+-|..+|+ +||.|.
T Consensus 10 ~lfVgnLp~~~te~~L~~~F~-~~G~i~ 36 (114)
T 2dnl_A 10 KVFVGGLPPDIDEDEITASFR-RFGPLV 36 (114)
T ss_dssp CEEEECCCTTCCHHHHHHHTT-TTCCCC
T ss_pred EEEEcCCCCCCCHHHHHHHHH-hcCCEE
Confidence 467899999999999999999 999997
No 112
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.88 E-value=0.37 Score=29.02 Aligned_cols=29 Identities=21% Similarity=0.206 Sum_probs=26.1
Q ss_pred EEEEEEecccceeehhhhhhhhccccccee
Q psy9172 29 VLRVIIEHMLYPITLDVLYQFDNYKFGHAF 58 (80)
Q Consensus 29 VLrviIeN~~YPVTldVLhqiFs~~fG~Vl 58 (80)
--.|.|.|+-+-+|-+-|..+|+ +||.|.
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~ 43 (113)
T 2cpe_A 15 NSAIYVQGLNDSVTLDDLADFFK-QCGVVK 43 (113)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHT-TTSCBC
T ss_pred CCEEEEcCCCCCCCHHHHHHHHH-hcCCEe
Confidence 34677899999999999999999 999997
No 113
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=89.76 E-value=0.21 Score=32.16 Aligned_cols=39 Identities=18% Similarity=0.241 Sum_probs=28.5
Q ss_pred CCCcEEEEEEecccceeeh-----hhhhhhhcccccceeeeceeecc
Q psy9172 25 GPNTVLRVIIEHMLYPITL-----DVLYQFDNYKFGHAFSTSLAMPR 66 (80)
Q Consensus 25 ~pn~VLrviIeN~~YPVTl-----dVLhqiFs~~fG~Vlrq~~a~~~ 66 (80)
.|++||. +.||+-|-.+ |=|...|+ +||.|.+=.+..+.
T Consensus 18 ~ps~vl~--L~Nm~~~~el~ddleedl~eef~-k~G~V~~v~I~~~~ 61 (118)
T 3ue2_A 18 QESTVMV--LRNMVDPKDIDDDLEGEVTEECG-KFGAVNRVIIYQEK 61 (118)
T ss_dssp HSCCEEE--EESCSCGGGCCTTHHHHHHHHHT-TTSCEEEEEEEEEE
T ss_pred CCCCEEE--EECCCCHHHHHHHHHHHHHHHHh-ccCCEeEEEEeecC
Confidence 3677876 6899877443 45779999 99999866665554
No 114
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=89.73 E-value=0.23 Score=31.71 Aligned_cols=33 Identities=15% Similarity=0.018 Sum_probs=27.5
Q ss_pred EEEEEecccceeehhhhhhhhcccccceeeecee
Q psy9172 30 LRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLA 63 (80)
Q Consensus 30 LrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a 63 (80)
-.|.|.|+-+-+|-+-|..+|+ +||.|.+-.+.
T Consensus 47 ~~l~V~nLp~~~te~~L~~~F~-~~G~I~~v~i~ 79 (129)
T 2kxn_B 47 CCLGVFGLSLYTTERDLREVFS-KYGPIADVSIV 79 (129)
T ss_dssp SCBCEETCTTSCCHHHHHHHHT-TTSCEEEEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEE
Confidence 3466899999999999999999 99999765444
No 115
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=89.55 E-value=0.42 Score=28.43 Aligned_cols=32 Identities=6% Similarity=0.164 Sum_probs=27.0
Q ss_pred EEEEEEecccceeehhhhhhhhcccccceeeec
Q psy9172 29 VLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTS 61 (80)
Q Consensus 29 VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~ 61 (80)
--.|.|.|+-+.+|-+-|..+|+ +||.|.+-.
T Consensus 29 ~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~ 60 (107)
T 3ulh_A 29 GGKLLVSNLDFGVSDADIQELFA-EFGTLKKAA 60 (107)
T ss_dssp SEEEEEESCCTTCCHHHHHHHHH-TTSCEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEE
Confidence 44677889999999999999999 999995433
No 116
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=89.48 E-value=0.18 Score=30.80 Aligned_cols=31 Identities=13% Similarity=0.215 Sum_probs=26.6
Q ss_pred EEEEecccceeehhhhh---hhhcccccceeeece
Q psy9172 31 RVIIEHMLYPITLDVLY---QFDNYKFGHAFSTSL 62 (80)
Q Consensus 31 rviIeN~~YPVTldVLh---qiFs~~fG~Vlrq~~ 62 (80)
+|-|.|+-+.+|-+-|. .+|+ +||.|.+-.+
T Consensus 17 ~l~V~nLp~~~~~~~l~~~~~~F~-~~G~i~~v~i 50 (111)
T 2cpi_A 17 LVFVVGLSQRLADPEVLKRPEYFG-KFGKIHKVVI 50 (111)
T ss_dssp CEEEEEECTTTCCHHHHHSTTTTT-TTSCEEEEEE
T ss_pred EEEEECCCCCCCHHHHHHHHHHhh-ccCCEEEEEE
Confidence 46789999999999999 9999 9999976544
No 117
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=89.31 E-value=0.21 Score=29.02 Aligned_cols=33 Identities=9% Similarity=0.209 Sum_probs=27.9
Q ss_pred EEEEEecccceeehhhhhhhhcccccceeeecee
Q psy9172 30 LRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLA 63 (80)
Q Consensus 30 LrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a 63 (80)
-+|-|.|+-+.+|-+-|..+|+ +||.|.+-.+.
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~~~~~ 48 (95)
T 2ek1_A 16 TVIKVQNMPFTVSIDEILDFFY-GYQVIPGSVCL 48 (95)
T ss_dssp EEEEEECCCTTCCHHHHHHHTT-TSCBCTTCCEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-hcCCccceEEE
Confidence 5677899999999999999999 99998754433
No 118
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.26 E-value=0.37 Score=29.41 Aligned_cols=35 Identities=14% Similarity=0.182 Sum_probs=28.8
Q ss_pred EEEEEecccceeehhhhhhhhcccccceeeeceeecccc
Q psy9172 30 LRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDE 68 (80)
Q Consensus 30 LrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~ 68 (80)
-.|-|.|+-|.+|-+-|...|+ +||.+ ++.+++++
T Consensus 16 ~~l~V~nLp~~~te~~l~~~F~-~~G~~---~v~i~~d~ 50 (102)
T 1wez_A 16 HCVHMRGLPYRATENDIYNFFS-PLNPM---RVHIEIGP 50 (102)
T ss_dssp CEEEEESCCTTCCHHHHHHSSC-SCCCS---EEEEEESS
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-HcCce---EEEEEECC
Confidence 4567899999999999999999 99955 46666665
No 119
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=89.23 E-value=0.41 Score=28.91 Aligned_cols=31 Identities=23% Similarity=0.404 Sum_probs=26.6
Q ss_pred EEEEecccceeehhhhhhhhcccccceeeece
Q psy9172 31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL 62 (80)
Q Consensus 31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~ 62 (80)
.|-|.|+-+-+|-+-|..+|+ +||.|.+-.+
T Consensus 10 ~l~V~nlp~~~t~~~l~~~F~-~~G~v~~v~i 40 (115)
T 3lqv_A 10 ILYIRNLPYKITAEEMYDIFG-KYGPIRQIRV 40 (115)
T ss_dssp EEEEESCCTTCCHHHHHHHHH-TTSCEEEEEE
T ss_pred EEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEE
Confidence 567899999999999999999 9999975433
No 120
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.20 E-value=0.23 Score=29.20 Aligned_cols=27 Identities=4% Similarity=0.032 Sum_probs=24.7
Q ss_pred EEEEecccceeehhhhhhhhccccccee
Q psy9172 31 RVIIEHMLYPITLDVLYQFDNYKFGHAF 58 (80)
Q Consensus 31 rviIeN~~YPVTldVLhqiFs~~fG~Vl 58 (80)
+|-|.|+-+-+|-+-|..+|+ +||.|.
T Consensus 11 ~l~V~nLp~~~t~~~l~~~F~-~~G~i~ 37 (99)
T 2div_A 11 SLWMGDLEPYMDENFISRAFA-TMGETV 37 (99)
T ss_dssp EEEECSCCTTCCHHHHHHHHH-HTTCCC
T ss_pred EEEEeCCCCCCCHHHHHHHHH-HhCCcc
Confidence 467899999999999999999 999986
No 121
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=89.17 E-value=0.35 Score=30.07 Aligned_cols=32 Identities=19% Similarity=0.321 Sum_probs=26.9
Q ss_pred EEEEecccceeehhhhhhhhcccccceeeecee
Q psy9172 31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLA 63 (80)
Q Consensus 31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a 63 (80)
.|-|.|+-+-+|-+-|..+|+ +||.|..-.+.
T Consensus 5 ~l~v~nLp~~~t~~~l~~~F~-~~G~i~~v~i~ 36 (167)
T 2cjk_A 5 KMFIGGLNWDTTEDNLREYFG-KYGTVTDLKIM 36 (167)
T ss_dssp EEEECSCCTTCCHHHHHHHHT-TTCCEEEEECC
T ss_pred EEEEeCCCCCCCHHHHHHHHH-hCCCEEEEEEE
Confidence 466789999999999999999 99999754443
No 122
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=89.13 E-value=0.38 Score=28.56 Aligned_cols=32 Identities=9% Similarity=0.036 Sum_probs=26.9
Q ss_pred EEEEEecccceeehhhhhhhhcccccceeeece
Q psy9172 30 LRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL 62 (80)
Q Consensus 30 LrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~ 62 (80)
-.|-|.|+-+-+|-+-|..+|+ +||.|.+-.+
T Consensus 24 ~~l~V~nlp~~~t~~~l~~~f~-~~G~i~~v~i 55 (106)
T 1p27_B 24 WILFVTGVHEEATEEDIHDKFA-EYGEIKNIHL 55 (106)
T ss_dssp EEEEEECCCTTCCHHHHHHHHG-GGSCEEEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHh-ccCCeEEEEE
Confidence 3566889999999999999999 9999965443
No 123
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=89.07 E-value=0.28 Score=28.64 Aligned_cols=30 Identities=20% Similarity=0.281 Sum_probs=25.3
Q ss_pred EEEEecccceeehhhhh----hhhcccccceeeec
Q psy9172 31 RVIIEHMLYPITLDVLY----QFDNYKFGHAFSTS 61 (80)
Q Consensus 31 rviIeN~~YPVTldVLh----qiFs~~fG~Vlrq~ 61 (80)
.|-|.|+-+.+|-+-|. .+|+ +||.|.+-.
T Consensus 10 ~l~V~nLp~~~~~~~l~~~l~~~f~-~~G~i~~v~ 43 (97)
T 1nu4_A 10 TIYINNLNEKIKKDELKKSLHAIFS-RFGQILDIL 43 (97)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHG-GGSCEEEEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHH-hCCCEEEEE
Confidence 45678999999999888 9999 999997543
No 124
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=89.05 E-value=0.4 Score=30.68 Aligned_cols=44 Identities=18% Similarity=0.209 Sum_probs=30.5
Q ss_pred CCCCcEEEEEEecccceee----------hhhhhhhhcccccceeeeceeeccccccCc
Q psy9172 24 GGPNTVLRVIIEHMLYPIT----------LDVLYQFDNYKFGHAFSTSLAMPRDELAGF 72 (80)
Q Consensus 24 ~~pn~VLrviIeN~~YPVT----------ldVLhqiFs~~fG~Vlrq~~a~~~~~~~~~ 72 (80)
.-|++| |.+.||+-|-. .|=|...|+ +||.|.+ +.++.+...||
T Consensus 4 p~ps~v--v~L~Nm~~~~e~~d~~~~~el~edl~~~f~-kfG~V~~--v~i~~~~~~G~ 57 (114)
T 3s6e_A 4 PLATQC--FQLSNMFNPQTEEEVGWDTEIKDDVIEECN-KHGGVIH--IYVDKNSAQGN 57 (114)
T ss_dssp CCCCSE--EEEESSCCTTTCCSTTHHHHHHHHHHHHHT-TTTCCSE--EEECTTCTTCC
T ss_pred CCCCcE--EEEECCCChHHccChhHHHHHHHHHHHHHh-ccCCEEE--EEEecCCCcEE
Confidence 356777 45789986643 224578999 9999974 55666666676
No 125
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.01 E-value=0.18 Score=29.54 Aligned_cols=39 Identities=15% Similarity=0.170 Sum_probs=29.9
Q ss_pred EEEEEecccceeehhhhhhhhcccccceeeeceeecccccc
Q psy9172 30 LRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDELA 70 (80)
Q Consensus 30 LrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~~~ 70 (80)
-.|-|.|+-+-+|-+-|..+|+ +||.|.+-+ .++.++..
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~-~~G~v~~~~-~i~~~~~~ 54 (96)
T 2e44_A 16 RKLQIRNIPPHLQWEVLDSLLV-QYGVVESCE-QVNTDSET 54 (96)
T ss_dssp CCEEEEEECSSSCHHHHHHHHH-HHSCEEEEE-EECCSSSS
T ss_pred CEEEEEcCCCCCCHHHHHHHHH-hcCCeEEEE-EeecCCCC
Confidence 3577899999999999999999 999997532 24444443
No 126
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=89.00 E-value=0.31 Score=29.17 Aligned_cols=35 Identities=14% Similarity=0.370 Sum_probs=27.6
Q ss_pred EEEEEecccceeehhhhhhhhcccccceeeeceeecccc
Q psy9172 30 LRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDE 68 (80)
Q Consensus 30 LrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~ 68 (80)
=+|-|.|+-+-+|-+-|..+|+ +|| |.+ +-+..++
T Consensus 20 ~~l~V~nLp~~~t~~~l~~~F~-~~G-i~~--v~i~~~~ 54 (100)
T 2j76_E 20 YTAFLGNLPYDVTEESIKEFFR-GLN-ISA--VRLPREP 54 (100)
T ss_dssp CEEEESCCSSCCSSSHHHHHSC-SSC-EEE--EECSCCT
T ss_pred cEEEEeCCCCCCCHHHHHHHHH-hcC-CeE--EEEEecC
Confidence 4567899999999999999999 999 764 4444443
No 127
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=88.93 E-value=0.27 Score=29.34 Aligned_cols=31 Identities=13% Similarity=0.214 Sum_probs=26.6
Q ss_pred EEEEEecccceeehhhhhhhhcccccceeeec
Q psy9172 30 LRVIIEHMLYPITLDVLYQFDNYKFGHAFSTS 61 (80)
Q Consensus 30 LrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~ 61 (80)
-.|.|.|+-+.+|-+-|..+|+ +||.|..-.
T Consensus 12 ~~l~V~nl~~~~t~~~l~~~F~-~~G~i~~v~ 42 (103)
T 2dgu_A 12 KVLFVRNLANTVTEEILEKAFS-QFGKLERVK 42 (103)
T ss_dssp CCEEEECCCTTCCHHHHHHHHH-HHSCEEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEE
Confidence 4566899999999999999999 999997544
No 128
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=88.88 E-value=0.3 Score=29.51 Aligned_cols=32 Identities=19% Similarity=0.231 Sum_probs=27.3
Q ss_pred EEEEEecccce-eehhhhhhhhcccccceeeece
Q psy9172 30 LRVIIEHMLYP-ITLDVLYQFDNYKFGHAFSTSL 62 (80)
Q Consensus 30 LrviIeN~~YP-VTldVLhqiFs~~fG~Vlrq~~ 62 (80)
-+|-|.|+-+. +|-+-|..+|+ +||.|..-.+
T Consensus 28 ~~l~V~nl~~~~~t~~~l~~~F~-~~G~v~~v~i 60 (110)
T 1wf1_A 28 SRVFIGNLNTALVKKSDVETIFS-KYGRVAGCSV 60 (110)
T ss_dssp SEEEECSCCCSSCCHHHHHHHHG-GGSCCSEEEE
T ss_pred cEEEEeCCCcccCCHHHHHHHHH-hCCCeEEEEE
Confidence 36778999988 99999999999 9999975444
No 129
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.87 E-value=0.45 Score=28.10 Aligned_cols=27 Identities=15% Similarity=0.208 Sum_probs=24.1
Q ss_pred EEEEEecccceeehhhhhhhhcccccce
Q psy9172 30 LRVIIEHMLYPITLDVLYQFDNYKFGHA 57 (80)
Q Consensus 30 LrviIeN~~YPVTldVLhqiFs~~fG~V 57 (80)
-.|.|.|+-+-+|-+-|..+|+ +||.|
T Consensus 16 ~~l~V~nLp~~~t~~~l~~~F~-~~g~v 42 (101)
T 2fc9_A 16 KTLVLSNLSYSATEETLQEVFE-KATFI 42 (101)
T ss_dssp SEEEEESCCTTCCHHHHHHHCS-SCSEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-hCCEE
Confidence 3456789999999999999999 99998
No 130
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.81 E-value=0.26 Score=29.73 Aligned_cols=39 Identities=15% Similarity=0.129 Sum_probs=29.9
Q ss_pred EEEEecccceeehhhhhhhhcccccceeeeceeeccccccCc
Q psy9172 31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDELAGF 72 (80)
Q Consensus 31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~~~~~ 72 (80)
.|.|.|+-+-+|-+-|..+|+ +||.|.+-. +..++--||
T Consensus 27 ~l~V~nl~~~~t~~~l~~~F~-~~G~i~~v~--i~~~~g~af 65 (109)
T 1x4g_A 27 TVYCGGIASGLTDQLMRQTFS-PFGQIMEIR--VFPEKGYSF 65 (109)
T ss_dssp EEEEECCSSCCCHHHHHHHHH-HHSCEEEEE--EETTTTEEE
T ss_pred EEEEeCCCCCCCHHHHHHHHH-hcCCeEEEE--EeCCCCEEE
Confidence 567799999999999999999 999997543 444443333
No 131
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=88.79 E-value=0.78 Score=27.19 Aligned_cols=38 Identities=8% Similarity=0.113 Sum_probs=29.1
Q ss_pred CcEEEEEEecccceeehhhhhhhhcccccceeeeceeecccc
Q psy9172 27 NTVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDE 68 (80)
Q Consensus 27 n~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~ 68 (80)
.+--.|-|.|+-+-+|-+-|..+|+ +|| |.. +-++.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~-~~g-i~~--v~i~~~~ 50 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFK-DLS-IRS--VRLVRDK 50 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTT-TSC-EEE--EEEEECS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHH-hCC-ceE--EEEeecC
Confidence 3445677899999999999999999 998 654 4444443
No 132
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=88.72 E-value=0.36 Score=30.02 Aligned_cols=32 Identities=6% Similarity=0.271 Sum_probs=27.4
Q ss_pred EEEEEecccceeehhhhhhhhcccccceeeece
Q psy9172 30 LRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL 62 (80)
Q Consensus 30 LrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~ 62 (80)
-+|-|.|+=+-+|-+-|...|+ +||.|..-.+
T Consensus 4 ~~l~V~nLp~~~te~~l~~~F~-~~G~i~~v~i 35 (175)
T 3nmr_A 4 IKMFVGQVPRTWSEKDLRELFE-QYGAVYEINV 35 (175)
T ss_dssp EEEEEESCCTTCCHHHHHHHHH-TTSCEEEEEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHH-hCCCEEEEEE
Confidence 4678999999999999999999 9999975443
No 133
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.59 E-value=0.59 Score=27.10 Aligned_cols=34 Identities=9% Similarity=0.264 Sum_probs=28.5
Q ss_pred cEEEEEEecccceeehhhhhhhhcccccceeeece
Q psy9172 28 TVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL 62 (80)
Q Consensus 28 ~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~ 62 (80)
+-=+|.|.|+-+-+|-+-|..+|+ +||.|.+-.+
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~~ 40 (90)
T 2dnq_A 7 GMVKLFIGNLPREATEQEIRSLFE-QYGKVLECDI 40 (90)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHHH-TSSCEEEEEE
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHH-hCCCEEEEEE
Confidence 345677899999999999999999 9999975444
No 134
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.48 E-value=0.42 Score=28.21 Aligned_cols=29 Identities=17% Similarity=0.173 Sum_probs=23.4
Q ss_pred EEEEecccceeehhhhhhhhcccccceeeece
Q psy9172 31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL 62 (80)
Q Consensus 31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~ 62 (80)
.|-|.| +.+|-+-|..+|+ +||.|.+-.+
T Consensus 17 ~l~V~n--~~~t~~~l~~~F~-~~G~i~~v~i 45 (97)
T 1x5p_A 17 TLYVYG--EDMTPTLLRGAFS-PFGNIIDLSM 45 (97)
T ss_dssp EEEEEC--SSCCHHHHHHHHT-TTSCEEEEEE
T ss_pred EEEEcC--CCCCHHHHHHHHh-hCCCEEEEEe
Confidence 455678 4999999999999 9999965433
No 135
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.46 E-value=0.34 Score=28.71 Aligned_cols=32 Identities=13% Similarity=0.237 Sum_probs=27.1
Q ss_pred EEEEEecccceeehhhhhhhhccc-ccceeeece
Q psy9172 30 LRVIIEHMLYPITLDVLYQFDNYK-FGHAFSTSL 62 (80)
Q Consensus 30 LrviIeN~~YPVTldVLhqiFs~~-fG~Vlrq~~ 62 (80)
-+|-|.|+-+.+|-+-|..+|+ + ||.|.+-.+
T Consensus 10 ~~l~V~nLp~~~t~~~l~~~F~-~~~G~v~~v~i 42 (104)
T 2dhg_A 10 YSLFVGDLTPDVDDGMLYEFFV-KVYPSCRGGKV 42 (104)
T ss_dssp CCEEEECCCTTCCHHHHHHHHH-HHCTTEEEEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHHH-HhCCCeEEEEE
Confidence 4567899999999999999999 9 999965443
No 136
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=88.38 E-value=0.21 Score=31.57 Aligned_cols=33 Identities=18% Similarity=0.251 Sum_probs=27.4
Q ss_pred CCCCcEEEEEEecccceeehhhhhhhhcccccceee
Q psy9172 24 GGPNTVLRVIIEHMLYPITLDVLYQFDNYKFGHAFS 59 (80)
Q Consensus 24 ~~pn~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlr 59 (80)
+.|++ .|-|.|+-+-+|-+-|..+|+ +||.|.+
T Consensus 42 ~~~~~--~l~V~nLp~~~te~~L~~~F~-~~G~i~~ 74 (143)
T 3egn_A 42 GEPNC--RIYVKNLAKHVQEKDLKYIFG-RYVDFSS 74 (143)
T ss_dssp CSCCS--EEEEEEECTTCCHHHHHHHHG-GGCCTTC
T ss_pred CCCCC--EEEEeCCCCCCCHHHHHHHHH-HhCCccc
Confidence 34443 567899999999999999999 9998864
No 137
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.36 E-value=0.69 Score=27.83 Aligned_cols=36 Identities=14% Similarity=0.169 Sum_probs=28.8
Q ss_pred EEEEEecccceeehhhhhhhhcccccceeeeceeeccc
Q psy9172 30 LRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRD 67 (80)
Q Consensus 30 LrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~ 67 (80)
-.|-|.|+-|.+|-+-|...|+ +||.|.. .+.++.+
T Consensus 16 ~~l~V~nLp~~~te~~l~~~F~-~~G~v~~-~v~i~~~ 51 (104)
T 1wg5_A 16 GFVRLRGLPFGCSKEEIVQFFS-GLEIVPN-GMTLPVD 51 (104)
T ss_dssp CEEEEESCCTTCCHHHHHHHTT-TCCEEEE-EEECCBC
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-hcCCcce-eEEEEEC
Confidence 4567899999999999999999 9999863 2445544
No 138
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=88.36 E-value=0.37 Score=29.62 Aligned_cols=31 Identities=19% Similarity=0.171 Sum_probs=26.4
Q ss_pred EEEEecccceeehhhhhhhhcccccceeeece
Q psy9172 31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL 62 (80)
Q Consensus 31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~ 62 (80)
+|-|.|+-+-+|-+-|...|+ +||.|.+-.+
T Consensus 2 ~l~V~nlp~~~t~~~l~~~f~-~~G~i~~v~i 32 (166)
T 3md3_A 2 VLYVGNLDKAITEDILKQYFQ-VGGPIANIKI 32 (166)
T ss_dssp EEEEEEEETTCCHHHHHHHHG-GGSCEEEEEE
T ss_pred EEEECCCCCcCCHHHHHHHHH-hcCCeEEEEE
Confidence 467899989999999999999 9999975443
No 139
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.36 E-value=0.37 Score=29.73 Aligned_cols=35 Identities=23% Similarity=0.281 Sum_probs=28.6
Q ss_pred EEEEecccceeehhhhhhhhcccccceeeeceeecccc
Q psy9172 31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDE 68 (80)
Q Consensus 31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~ 68 (80)
.|-|.|+-+-+|-+-|...|+ +||.|.. +-+++++
T Consensus 13 ~lfV~~Lp~~~te~~L~~~F~-~~G~v~~--v~i~~d~ 47 (103)
T 1s79_A 13 SVYIKGFPTDATLDDIKEWLE-DKGQVLN--IQMRRTL 47 (103)
T ss_dssp CEEEECCCTTCCHHHHHHHHH-TSSCEEE--EEEECCC
T ss_pred EEEEECCCCCCCHHHHHHHHh-hcCCEEE--EEEEECC
Confidence 356789999999999999999 9999964 5556554
No 140
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=88.19 E-value=0.44 Score=30.35 Aligned_cols=37 Identities=14% Similarity=0.246 Sum_probs=29.7
Q ss_pred CCcEEEEEEecccceeehhhhhhhhcccccceeeecee
Q psy9172 26 PNTVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLA 63 (80)
Q Consensus 26 pn~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a 63 (80)
+.+--.|-|.|+-+-+|-+-|..+|+ +||.|..-.+.
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~-~~G~i~~v~i~ 46 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFE-QWGTLTDCVVM 46 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hCCCEEEEEEE
Confidence 33444677899999999999999999 99999754443
No 141
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.07 E-value=0.24 Score=30.70 Aligned_cols=30 Identities=10% Similarity=0.075 Sum_probs=26.7
Q ss_pred EEEEEEecccceeehhhhhhhhcccccceee
Q psy9172 29 VLRVIIEHMLYPITLDVLYQFDNYKFGHAFS 59 (80)
Q Consensus 29 VLrviIeN~~YPVTldVLhqiFs~~fG~Vlr 59 (80)
--.|-|.|+-|.+|-+-|..+|+ +||.|..
T Consensus 25 ~~~l~V~nLp~~~te~~l~~~F~-~~G~v~~ 54 (124)
T 1wel_A 25 GFCVYLKGLPFEAENKHVIDFFK-KLDIVED 54 (124)
T ss_dssp CCEEEEECCCTTCCHHHHHHHSC-SSCBCTT
T ss_pred CcEEEEeCCCCCCCHHHHHHHHH-hcCCccc
Confidence 35678999999999999999999 9999864
No 142
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=88.06 E-value=0.41 Score=33.09 Aligned_cols=58 Identities=10% Similarity=0.086 Sum_probs=38.4
Q ss_pred HHHHHHHHHhhhhhcCCC----CCCCCCcEEEEEEecccceeehhhhhhhhcccccceeeeceee
Q psy9172 4 ASAQAALQAAQALTGQTD----TQGGPNTVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAM 64 (80)
Q Consensus 4 ~~aqaALqa~n~v~~~~~----~~~~pn~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~ 64 (80)
..|+.|+..++.....+. ....++. .|.|.|+-+.+|-+-|..+|+ +||.|.+-.+..
T Consensus 69 ~~A~~A~~~l~g~~i~g~~l~v~~a~~~~--~l~v~nl~~~~t~~~l~~~F~-~~G~i~~v~i~~ 130 (261)
T 3sde_A 69 TLAEIAKAELDGTILKSRPLRIRFATHGA--ALTVKNLSPVVSNELLEQAFS-QFGPVEKAVVVV 130 (261)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEECCCSS--EEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEE
T ss_pred HHHHHHHHHcCCcEECCceeEeeecccCC--cccccCCCCCCCHHHHHHHHH-hcCCeEEEEeee
Confidence 467778877763222110 0112222 477899999999999999999 999997654443
No 143
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=87.97 E-value=0.38 Score=32.96 Aligned_cols=40 Identities=20% Similarity=0.327 Sum_probs=29.2
Q ss_pred EEEEecccceeehhh----hhhhhcccccceeeeceeeccccccCc
Q psy9172 31 RVIIEHMLYPITLDV----LYQFDNYKFGHAFSTSLAMPRDELAGF 72 (80)
Q Consensus 31 rviIeN~~YPVTldV----LhqiFs~~fG~Vlrq~~a~~~~~~~~~ 72 (80)
+|.|.|+-+.+|-|- |+.+|+ +||.|.+-++. ...++-||
T Consensus 11 ~l~V~nlp~~~~~~~l~~~L~~~F~-~~G~i~~v~~~-~~~~~~g~ 54 (282)
T 3pgw_A 11 TIYINNLNEKIKKDELKKSLYAIFS-QFGQILDILVS-RSLKMRGQ 54 (282)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHh-ccCCeEEEEEc-CCCCcceE
Confidence 567899999999999 669999 99999764332 23344443
No 144
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.85 E-value=0.44 Score=27.98 Aligned_cols=30 Identities=17% Similarity=0.161 Sum_probs=26.8
Q ss_pred EEEEEEecccceeehhhhhhhhcccccceee
Q psy9172 29 VLRVIIEHMLYPITLDVLYQFDNYKFGHAFS 59 (80)
Q Consensus 29 VLrviIeN~~YPVTldVLhqiFs~~fG~Vlr 59 (80)
.-+|-|.|+-+.+|-+-|..+|+ +||.|.+
T Consensus 8 ~~~l~V~nl~~~~t~~~l~~~F~-~~G~v~~ 37 (94)
T 2e5g_A 8 LRSVFVSGFPRGVDSAQLSEYFL-AFGPVAS 37 (94)
T ss_dssp CCEEEEECCCTTCCHHHHHHHGG-GTSCEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHH-hcCCeEE
Confidence 34678999999999999999999 9999975
No 145
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=87.84 E-value=0.41 Score=30.39 Aligned_cols=45 Identities=11% Similarity=0.144 Sum_probs=33.9
Q ss_pred CCCcEEEEEEecccceeehhhhhhhhccccc-ceeeeceeeccccccCc
Q psy9172 25 GPNTVLRVIIEHMLYPITLDVLYQFDNYKFG-HAFSTSLAMPRDELAGF 72 (80)
Q Consensus 25 ~pn~VLrviIeN~~YPVTldVLhqiFs~~fG-~Vlrq~~a~~~~~~~~~ 72 (80)
.|.+--+|.|.|+-|-+|-+-|..+|+ +|| .|..-.+ +.+++-||
T Consensus 24 ~p~~~~~l~VgnLp~~~te~dL~~~F~-~~G~~v~~v~i--~~~~~rGf 69 (111)
T 2jvr_A 24 LPAKRYRITMKNLPEGCSWQDLKDLAR-ENSLETTFSSV--NTRDFDGT 69 (111)
T ss_dssp -CCCCEEEEEECSSCCCCHHHHHHHHH-HHTCCCSEEEC--SSCSSSCC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHH-HhCCeeEEEEE--EcCCCCCE
Confidence 344557899999999999999999999 999 7764333 33445565
No 146
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=87.80 E-value=0.3 Score=31.50 Aligned_cols=36 Identities=8% Similarity=0.168 Sum_probs=29.0
Q ss_pred CCCCcEEEEEEecccce-eehhhhhhhhcccccceeeece
Q psy9172 24 GGPNTVLRVIIEHMLYP-ITLDVLYQFDNYKFGHAFSTSL 62 (80)
Q Consensus 24 ~~pn~VLrviIeN~~YP-VTldVLhqiFs~~fG~Vlrq~~ 62 (80)
..|+++|. |.|+-|- +|-+-|..+|+ +||.|.+-.+
T Consensus 22 ~~p~~~l~--V~NLp~~~~te~~L~~lF~-~fG~V~~v~i 58 (112)
T 1x4f_A 22 QELGRVIH--LSNLPHSGYSDSAVLKLAE-PYGKIKNYIL 58 (112)
T ss_dssp SCCCCEEE--EESCCCSSCCSHHHHTTTT-TTSCCSEEEE
T ss_pred CCCCCEEE--EeCCCCccCCHHHHHHHHH-hcCCEEEEEE
Confidence 45666554 6899997 99999999999 9999976544
No 147
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=87.73 E-value=0.39 Score=31.06 Aligned_cols=46 Identities=20% Similarity=0.323 Sum_probs=30.4
Q ss_pred CCCCCcEEEEEEecccceeehhh----hhhhhcccccceeeeceeeccccccCc
Q psy9172 23 QGGPNTVLRVIIEHMLYPITLDV----LYQFDNYKFGHAFSTSLAMPRDELAGF 72 (80)
Q Consensus 23 ~~~pn~VLrviIeN~~YPVTldV----LhqiFs~~fG~Vlrq~~a~~~~~~~~~ 72 (80)
...|++. |-|.|+-+-++-|- |+.+|+ +||.|.+=.+ +...++-||
T Consensus 25 ~~~p~~~--LfV~nL~~~~~e~~L~~~L~~~F~-~~G~I~~v~i-~~~~~~rG~ 74 (127)
T 2a3j_A 25 HTEPSQV--VLITNINPEVPKEKLQALLYALAS-SQGDILDIVV-DLSDDNSGK 74 (127)
T ss_dssp CCSCCSE--EEEESCCTTSCHHHHHHHHHHHHH-HHSCEEEEEE-CCCCSSCCC
T ss_pred CCCCCCE--EEEeCCCCCCCHHHHHHHHHHHhc-cCCCeEEEEe-ccCCCcCCE
Confidence 3455554 55789988899875 568999 9999965222 222345555
No 148
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=87.63 E-value=0.54 Score=28.17 Aligned_cols=31 Identities=16% Similarity=0.463 Sum_probs=26.5
Q ss_pred EEEEecccc-eeehhhhhhhhcccccceeeece
Q psy9172 31 RVIIEHMLY-PITLDVLYQFDNYKFGHAFSTSL 62 (80)
Q Consensus 31 rviIeN~~Y-PVTldVLhqiFs~~fG~Vlrq~~ 62 (80)
+|-|.|+-+ -+|-+-|..+|+ +||.|.+-.+
T Consensus 24 ~l~V~nLp~~~~t~~~L~~~F~-~~G~v~~v~i 55 (97)
T 2xnq_A 24 RLFIGNLPLKNVSKEDLFRIFS-PYGHIMQINI 55 (97)
T ss_dssp EEEEESCCSSCCCHHHHHHHHG-GGSCEEEEEE
T ss_pred EEEEeCCCcccCCHHHHHHHHH-hcCCEEEEEE
Confidence 466789988 899999999999 9999976444
No 149
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=87.44 E-value=0.51 Score=29.23 Aligned_cols=35 Identities=14% Similarity=0.150 Sum_probs=28.5
Q ss_pred EEEEecccceeehhhhhhhhcccccceeeeceeecccc
Q psy9172 31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDE 68 (80)
Q Consensus 31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~ 68 (80)
.|-|.|+-+-+|-+-|.++|+ +||.|.+ +-+..++
T Consensus 9 ~l~V~nLp~~~t~~~l~~~F~-~~G~i~~--v~i~~~~ 43 (116)
T 2fy1_A 9 KLFIGGLNRETNEKMLKAVFG-KHGPISE--VLLIKDR 43 (116)
T ss_dssp EEEEECCTTTCCHHHHHHHHH-TSSCCSE--EEEECST
T ss_pred EEEEeCCCCCCCHHHHHHHHH-hcCCEEE--EEEEECC
Confidence 567899999999999999999 9999965 4444443
No 150
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=87.35 E-value=0.37 Score=30.63 Aligned_cols=37 Identities=14% Similarity=0.011 Sum_probs=29.6
Q ss_pred cEEEEEEecccceeehhhhhhhhcccccceeeeceeeccc
Q psy9172 28 TVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRD 67 (80)
Q Consensus 28 ~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~ 67 (80)
+--+|-|.|+-+.+|-+-|..+|+ +||.|.+ +-++.+
T Consensus 72 ~~~~l~V~nl~~~~t~~~l~~~F~-~~G~i~~--v~i~~~ 108 (150)
T 2i2y_A 72 LDCKVYVGNLGNNGNKTELERAFG-YYGPLRS--VWVARN 108 (150)
T ss_dssp TSCEEEEESCCSCCSCHHHHHHHH-HHSCEEE--EEECSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH-hhCCEEE--EEEeeC
Confidence 344677899999999999999999 9999964 344444
No 151
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=87.32 E-value=0.49 Score=32.55 Aligned_cols=35 Identities=11% Similarity=0.278 Sum_probs=28.9
Q ss_pred EEEEEEecccceeehhhhhhhhcccccceeeeceee
Q psy9172 29 VLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAM 64 (80)
Q Consensus 29 VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~ 64 (80)
--.|.|.|+=+.+|-+-|..+|+ +||.|..=.+..
T Consensus 41 ~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~ 75 (292)
T 2ghp_A 41 LTTVLVKNLPKSYNQNKVYKYFK-HCGPIIHVDVAD 75 (292)
T ss_dssp -CEEEEEEECTTCCHHHHHHHHG-GGSCEEEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEE
Confidence 44678899999999999999999 999997655544
No 152
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=87.25 E-value=0.45 Score=33.22 Aligned_cols=33 Identities=12% Similarity=0.110 Sum_probs=28.0
Q ss_pred EEEEecccceeehhhhhhhhccccc--ceeeeceee
Q psy9172 31 RVIIEHMLYPITLDVLYQFDNYKFG--HAFSTSLAM 64 (80)
Q Consensus 31 rviIeN~~YPVTldVLhqiFs~~fG--~Vlrq~~a~ 64 (80)
.|-|.|+-|-+|-+-|..+|+ +|| .|.+-++..
T Consensus 70 ~lfVgnL~~~~te~~L~~~F~-~~G~~~v~~v~i~~ 104 (229)
T 3q2s_C 70 ALYIGNLTWWTTDEDLTEAVH-SLGVNDILEIKFFE 104 (229)
T ss_dssp EEEEESCCTTCCHHHHHHHHH-TTTCCCEEEEEEEE
T ss_pred EEEEeCCCCCCCHHHHHHHHH-HHCCcceEEEEEEe
Confidence 488999999999999999999 999 886544433
No 153
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=87.23 E-value=0.58 Score=27.34 Aligned_cols=32 Identities=9% Similarity=0.224 Sum_probs=27.0
Q ss_pred EEEEEecccceeehhhhhhhhcccccceeeece
Q psy9172 30 LRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL 62 (80)
Q Consensus 30 LrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~ 62 (80)
-+|-|.|+-+.+|-+-|..+|+ +||.|..-.+
T Consensus 16 ~~l~v~nLp~~~t~~~l~~~F~-~~G~v~~~~~ 47 (98)
T 2cqp_A 16 TIIKVQNMPFTVSIDEILDFFY-GYQVIPGSVC 47 (98)
T ss_dssp EEEEEESCCTTCCHHHHHHHTT-TSCCCTTTCE
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-HcCCccceEE
Confidence 4677899999999999999999 9999964333
No 154
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=87.19 E-value=0.49 Score=27.95 Aligned_cols=32 Identities=16% Similarity=0.427 Sum_probs=27.1
Q ss_pred EEEEEecccc-eeehhhhhhhhcccccceeeece
Q psy9172 30 LRVIIEHMLY-PITLDVLYQFDNYKFGHAFSTSL 62 (80)
Q Consensus 30 LrviIeN~~Y-PVTldVLhqiFs~~fG~Vlrq~~ 62 (80)
-+|-|.|+-+ -+|-+-|..+|+ +||.|..-.+
T Consensus 11 ~~l~V~nlp~~~~t~~~l~~~F~-~~G~v~~v~i 43 (96)
T 2kvi_A 11 SRLFIGNLPLKNVSKEDLFRIFS-PYGHIMQINI 43 (96)
T ss_dssp EEEEEESSTTSCCCHHHHHHHHT-TTCCCCEEEE
T ss_pred CEEEEeCCCcccCCHHHHHHHHH-hcCCEEEEEE
Confidence 3567899998 999999999999 9999976443
No 155
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=86.99 E-value=1.1 Score=27.49 Aligned_cols=39 Identities=13% Similarity=0.238 Sum_probs=30.4
Q ss_pred CcEEEEEEecccceeehhhhhhhhcccccceeeeceeecccc
Q psy9172 27 NTVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDE 68 (80)
Q Consensus 27 n~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~ 68 (80)
.+==+|.|.|+-+-+|-+-|..+|+ +||.|.+- -++.++
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~v~~v--~i~~~~ 71 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFA-EFGTLKKA--AVDYDR 71 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHH-TTSCCSEE--EEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeeEE--EEEECC
Confidence 3345678899999999999999999 99999654 444443
No 156
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=86.91 E-value=0.4 Score=36.87 Aligned_cols=33 Identities=12% Similarity=0.110 Sum_probs=28.1
Q ss_pred EEEEEEecccceeehhhhhhhhcccccceeeece
Q psy9172 29 VLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL 62 (80)
Q Consensus 29 VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~ 62 (80)
.-.|.|.|+-+.||-+-|..+|+ +||.|..-.+
T Consensus 102 ~~~lfV~nL~~~~te~~L~~~F~-~~G~I~~v~i 134 (437)
T 3pgw_S 102 FKTLFVARVNYDTTESKLRREFE-VYGPIKRIHM 134 (437)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-HcCCeeEEEe
Confidence 34678999999999999999999 9999975444
No 157
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=86.66 E-value=0.5 Score=36.02 Aligned_cols=45 Identities=18% Similarity=0.225 Sum_probs=34.2
Q ss_pred CCCCcEEEEEEec--ccceeehhhhhhhhcccccceeeeceeeccccccCcc
Q psy9172 24 GGPNTVLRVIIEH--MLYPITLDVLYQFDNYKFGHAFSTSLAMPRDELAGFR 73 (80)
Q Consensus 24 ~~pn~VLrviIeN--~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~~~~~~ 73 (80)
..|+..| -|-| +-|-+|=|-|.++|+ +||.|. ++.|+..|.-||-
T Consensus 15 ~~ps~~l--~VgN~gl~~~~te~~L~~~F~-~~G~V~--~v~~~~~kgfaFV 61 (345)
T 3tht_A 15 SYATQSL--VVANGGLGNGVSRNQLLPVLE-KCGLVD--ALLMPPNKPYSFA 61 (345)
T ss_dssp SSCCSEE--EEETCSGGGTCCHHHHHHHHH-TTSCEE--EEECCTTCSEEEE
T ss_pred CCCCCEE--EEEcCCCCCCCCHHHHHHHHH-hcCCeE--EEEEeCCCCEEEE
Confidence 4566554 4567 568999999999999 999995 4777777766653
No 158
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=86.41 E-value=0.64 Score=28.77 Aligned_cols=32 Identities=16% Similarity=0.203 Sum_probs=26.7
Q ss_pred EEEEecccceeehhhhhhhhcccccceeeecee
Q psy9172 31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLA 63 (80)
Q Consensus 31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a 63 (80)
.|.|.|+=+-+|-+-|..+|+ +||.|.+-.+.
T Consensus 5 ~l~v~nlp~~~~~~~l~~~f~-~~G~i~~v~i~ 36 (168)
T 1b7f_A 5 NLIVNYLPQDMTDRELYALFR-AIGPINTCRIM 36 (168)
T ss_dssp EEEEECCCTTCCHHHHHHHHH-TTSCEEEEECC
T ss_pred EEEEeCCCCCCCHHHHHHHHH-hcCCeeEEEEE
Confidence 466789988999999999999 99999754443
No 159
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=86.29 E-value=0.7 Score=29.86 Aligned_cols=31 Identities=26% Similarity=0.347 Sum_probs=26.9
Q ss_pred EEEEecccceeehhhhhhhhcccccceeeece
Q psy9172 31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL 62 (80)
Q Consensus 31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~ 62 (80)
+|.|.|+-+-+|-+-|..+|+ +||.|..-.+
T Consensus 30 ~l~V~nLp~~~t~~~l~~~f~-~~G~i~~v~i 60 (216)
T 2qfj_A 30 RVYVGSIYYELGEDTIRQAFA-PFGPIKSIDM 60 (216)
T ss_dssp EEEEECCCTTCCHHHHHHHHG-GGSCEEEEEE
T ss_pred EEEEECCCCCCCHHHHHHHHH-hCCCEEEEEE
Confidence 577899999999999999999 9999975443
No 160
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=86.15 E-value=0.65 Score=28.50 Aligned_cols=31 Identities=16% Similarity=0.190 Sum_probs=26.2
Q ss_pred EEEEecccceeehhhhhhhhcccccceeeece
Q psy9172 31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL 62 (80)
Q Consensus 31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~ 62 (80)
.|-|.|+-+-+|-+-|..+|+ +||.|.+-.+
T Consensus 4 ~l~v~nlp~~~~~~~l~~~f~-~~G~i~~v~~ 34 (167)
T 1fxl_A 4 NLIVNYLPQNMTQEEFRSLFG-SIGEIESCKL 34 (167)
T ss_dssp EEEEESCCTTCCHHHHHHHHH-TTSCEEEEEE
T ss_pred eEEEcCCCCCCCHHHHHHHHH-hcCCeEEEEE
Confidence 366789989999999999999 9999965443
No 161
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=86.08 E-value=0.5 Score=29.84 Aligned_cols=29 Identities=17% Similarity=0.107 Sum_probs=23.4
Q ss_pred EEEEEecccceeehhhhhhhhcccccceeeec
Q psy9172 30 LRVIIEHMLYPITLDVLYQFDNYKFGHAFSTS 61 (80)
Q Consensus 30 LrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~ 61 (80)
-.|-|.| +.+|-+-|..+|+ +||.|.+-.
T Consensus 40 ~~lfVgn--l~~te~~L~~~F~-~~G~I~~v~ 68 (121)
T 2bz2_A 40 NTLYVYG--EDMTPTLLRGAFS-PFGNIIDLS 68 (121)
T ss_dssp CEEEEEC--SSCCHHHHHHHHS-TTCCCSCEE
T ss_pred CEEEEcC--CCCCHHHHHHHHH-ccCCEEEEE
Confidence 3456678 5899999999999 999996543
No 162
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=86.07 E-value=0.53 Score=31.12 Aligned_cols=33 Identities=18% Similarity=0.135 Sum_probs=27.6
Q ss_pred EEEEEecccceeehhhhhhhhccccc--ceeeecee
Q psy9172 30 LRVIIEHMLYPITLDVLYQFDNYKFG--HAFSTSLA 63 (80)
Q Consensus 30 LrviIeN~~YPVTldVLhqiFs~~fG--~Vlrq~~a 63 (80)
-.|-|.|+-|-+|-+-|..+|+ +|| .|..-++.
T Consensus 56 ~~lfVgnLp~~~te~~L~~~F~-~~G~i~v~~v~i~ 90 (156)
T 3n9u_C 56 AAVYVGSFSWWTTDQQLIQVIR-SIGVYDVVELKFA 90 (156)
T ss_dssp CEEEEECCCTTCCHHHHHHHHH-HTTCCCEEEEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-HHCCccEEEEEEE
Confidence 3688999999999999999999 999 77654443
No 163
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=85.88 E-value=0.51 Score=27.51 Aligned_cols=27 Identities=15% Similarity=0.097 Sum_probs=24.5
Q ss_pred EEEEecccceeehhhhhhhhccccccee
Q psy9172 31 RVIIEHMLYPITLDVLYQFDNYKFGHAF 58 (80)
Q Consensus 31 rviIeN~~YPVTldVLhqiFs~~fG~Vl 58 (80)
.|-|.|+-+.+|-+-|..+|+ +||.|.
T Consensus 18 ~l~V~nL~~~~t~~~l~~~F~-~~g~v~ 44 (96)
T 1fjc_A 18 TLLAKNLSFNITEDELKEVFE-DALEIR 44 (96)
T ss_dssp EEEEESCCSSCCHHHHHHHHC-SEEEEC
T ss_pred EEEEeCCCCCCCHHHHHHHHh-hCCcEE
Confidence 566899999999999999999 999985
No 164
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=85.70 E-value=1 Score=27.54 Aligned_cols=40 Identities=15% Similarity=0.107 Sum_probs=30.2
Q ss_pred CcEEEEEEecccceeehhhhhhhhcccccceeeeceeecccc
Q psy9172 27 NTVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDE 68 (80)
Q Consensus 27 n~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~ 68 (80)
.+--.|-|.|+-|-+|-+-|..+|+ +||.|. .++-++.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~-~~g~v~-~~v~i~~d~ 52 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLE-GIPVDE-NAVHVLVDN 52 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTT-TSCCCS-TTEEECCCT
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHH-hCCCcC-CeEEEEECC
Confidence 3345578899999999999999999 999982 234455544
No 165
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=85.56 E-value=0.45 Score=30.46 Aligned_cols=30 Identities=13% Similarity=0.112 Sum_probs=26.5
Q ss_pred EEEecccceeehhhhhhhhcccccceeeece
Q psy9172 32 VIIEHMLYPITLDVLYQFDNYKFGHAFSTSL 62 (80)
Q Consensus 32 viIeN~~YPVTldVLhqiFs~~fG~Vlrq~~ 62 (80)
+.|-|+-|-+|-+.|...|+ +||.|..=.+
T Consensus 10 L~VgNL~~~~te~~L~~lF~-q~G~V~~~~l 39 (89)
T 2wbr_A 10 LLLKNLTAQIDGPTLRTLCM-QHGPLVSFHP 39 (89)
T ss_dssp EEEECCCTTCCCHHHHHHHH-HHSCEEEEEE
T ss_pred EEEeCCCccCCHHHHHHHHH-hhCCEEEEEE
Confidence 44899999999999999999 9999976554
No 166
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=85.68 E-value=0.16 Score=31.02 Aligned_cols=28 Identities=7% Similarity=0.221 Sum_probs=25.3
Q ss_pred EEEEecccceeehhhhhhhhcccccceee
Q psy9172 31 RVIIEHMLYPITLDVLYQFDNYKFGHAFS 59 (80)
Q Consensus 31 rviIeN~~YPVTldVLhqiFs~~fG~Vlr 59 (80)
+|-|.|+-+.+|-+-|..+|+ +||.|..
T Consensus 9 ~l~V~nLp~~~t~~~l~~~F~-~~G~i~~ 36 (116)
T 2lcw_A 9 TIFVQGLGENVTIESVADYFK-QIGIIKT 36 (116)
Confidence 567899999999999999999 9999965
No 167
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=85.27 E-value=0.47 Score=27.51 Aligned_cols=31 Identities=10% Similarity=0.183 Sum_probs=26.5
Q ss_pred EEEEecccceeehhhhhhhhcccccceeeece
Q psy9172 31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL 62 (80)
Q Consensus 31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~ 62 (80)
.|-|.|+-+.+|-+-|..+|+ +||.|.+-.+
T Consensus 11 ~l~V~nlp~~~t~~~l~~~F~-~~G~v~~~~~ 41 (90)
T 2dnp_A 11 KIFVGNVSAACTSQELRSLFE-RRGRVIECDV 41 (90)
T ss_dssp CEEEESCCTTCCHHHHHHHHH-HHSCEEEEEE
T ss_pred EEEEeCCCCCCCHHHHHHHHH-cCCCEEEEEE
Confidence 467899999999999999999 9999865443
No 168
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=85.08 E-value=0.65 Score=28.48 Aligned_cols=32 Identities=13% Similarity=0.192 Sum_probs=27.1
Q ss_pred EEEEEecccceeehhhhhhhhcccccceeeece
Q psy9172 30 LRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL 62 (80)
Q Consensus 30 LrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~ 62 (80)
-.|-|.|+-+-+|-+-|..+|+ +||.|.+-.+
T Consensus 32 ~~l~V~nLp~~~t~~~L~~~F~-~~G~i~~v~i 63 (108)
T 2jvo_A 32 TRLFVRPFPLDVQESELNEIFG-PFGPMKEVKI 63 (108)
T ss_dssp SEEEECSSCTTCCHHHHHHHHT-TTSCCCEEEE
T ss_pred CEEEEECCCCCCCHHHHHHHHH-hcCCEEEEEE
Confidence 3566899999999999999999 9999975444
No 169
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=84.84 E-value=0.76 Score=27.79 Aligned_cols=40 Identities=8% Similarity=0.102 Sum_probs=30.3
Q ss_pred CcEEEEEEecccceeehhhhhhhhcccccc---eeeeceeeccccc
Q psy9172 27 NTVLRVIIEHMLYPITLDVLYQFDNYKFGH---AFSTSLAMPRDEL 69 (80)
Q Consensus 27 n~VLrviIeN~~YPVTldVLhqiFs~~fG~---Vlrq~~a~~~~~~ 69 (80)
+.--+|-|.|+-|-+|-+-|...|+ +||. |. .+-++.++.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~-~~g~~~~v~--~v~i~~~~~ 51 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFS-DCRIRNGEN--GIHFLLNRD 51 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTT-TSCBTTTTT--TEECCCCTT
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHH-hcCCcCCcc--eEEEEECCC
Confidence 3445677899999999999999999 9998 54 344455543
No 170
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=84.61 E-value=0.41 Score=28.25 Aligned_cols=31 Identities=10% Similarity=-0.058 Sum_probs=27.7
Q ss_pred cEEEEEEecccceeehhhhhhhhcccccceee
Q psy9172 28 TVLRVIIEHMLYPITLDVLYQFDNYKFGHAFS 59 (80)
Q Consensus 28 ~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlr 59 (80)
+--.|-|.|+-+-+|-+-|..+|+ +||.|..
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~-~~G~v~~ 46 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAIS-ELFAKND 46 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHH-HHHHHHT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH-HhCCcce
Confidence 345788999999999999999999 9999876
No 171
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=84.31 E-value=1.1 Score=26.41 Aligned_cols=33 Identities=9% Similarity=0.156 Sum_probs=27.6
Q ss_pred cEEEEEEecccceeehhhhhhhhcccc--cceeeec
Q psy9172 28 TVLRVIIEHMLYPITLDVLYQFDNYKF--GHAFSTS 61 (80)
Q Consensus 28 ~VLrviIeN~~YPVTldVLhqiFs~~f--G~Vlrq~ 61 (80)
+--+|-|.|+-+.+|-+-|..+|+ +| |.|.+-+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~-~~g~g~v~~~~ 48 (99)
T 2cpd_A 14 SVKILYVRNLMLSTSEEMIEKEFN-NIKPGAVERVK 48 (99)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHH-TTSTTCEEEEE
T ss_pred CcCEEEEeCCCCCCCHHHHHHHHH-hcCCcceEEEE
Confidence 345677899999999999999999 99 8887543
No 172
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=84.18 E-value=0.71 Score=31.73 Aligned_cols=31 Identities=13% Similarity=0.240 Sum_probs=26.5
Q ss_pred EEEEecccce-eehhhhhhhhcccccceeeece
Q psy9172 31 RVIIEHMLYP-ITLDVLYQFDNYKFGHAFSTSL 62 (80)
Q Consensus 31 rviIeN~~YP-VTldVLhqiFs~~fG~Vlrq~~ 62 (80)
.|.|.|+-+. +|-+-|.++|+ +||.|.+-.+
T Consensus 212 ~l~v~nlp~~~~t~~~l~~~F~-~~G~v~~v~i 243 (292)
T 2ghp_A 212 EIMIRNLSTELLDENLLRESFE-GFGSIEKINI 243 (292)
T ss_dssp EEEEEEECTTTCCHHHHHHHHG-GGSCEEEEEC
T ss_pred eEEEECCCcccCCHHHHHHHHh-ccCCeeEEEE
Confidence 4668899888 99999999999 9999976443
No 173
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=83.75 E-value=0.98 Score=28.38 Aligned_cols=39 Identities=13% Similarity=0.070 Sum_probs=29.7
Q ss_pred EEEEEecccceeehhhhhhhhcccccceeeeceeeccccccCc
Q psy9172 30 LRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDELAGF 72 (80)
Q Consensus 30 LrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~~~~~ 72 (80)
-.|.|.|+-+.+|-+-|.++|+ +||.|..- ....++-||
T Consensus 100 ~~l~v~nlp~~~t~~~l~~~F~-~~g~v~~~---~~~~~~~g~ 138 (175)
T 1fje_B 100 RTLLAKNLSFNITEDELKEVFE-DALEIRLV---SQDGKSKGI 138 (175)
T ss_dssp GEEEEESCCSSCCHHHHHHHCT-TCSEEEEE---CSSSSCCSE
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-hcCeEEEe---cCCCCCceE
Confidence 4577899999999999999999 99999632 333344554
No 174
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=83.09 E-value=1 Score=30.78 Aligned_cols=57 Identities=14% Similarity=0.114 Sum_probs=38.3
Q ss_pred HHHHHHHHHhhhhhcCCC----CCCCCCcEEEEEEecccceeehhhhhhhhcccccceeeecee
Q psy9172 4 ASAQAALQAAQALTGQTD----TQGGPNTVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLA 63 (80)
Q Consensus 4 ~~aqaALqa~n~v~~~~~----~~~~pn~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a 63 (80)
..|+.|++.++.....+. ....++. .|.|.|+-+.+|-+-|..+|+ +||.|.+-.+.
T Consensus 68 ~~A~~A~~~l~~~~~~g~~i~v~~~~~~~--~l~v~nlp~~~t~~~l~~~f~-~~G~i~~~~i~ 128 (284)
T 3smz_A 68 EQAEAAINAFHQSRLRERELSVQLQPTDA--LLCVANLPPSLTQQQFEELVR-PFGSLERCFLV 128 (284)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEECCCSC--EEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEE
T ss_pred HHHHHHHHHcCCCeeCCeEEEEEecCCCC--EEEEcCCCCcCCHHHHHHHHH-hcCCeeEEEEE
Confidence 467778877763222111 1112222 467899999999999999999 99999765543
No 175
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=82.97 E-value=0.64 Score=27.61 Aligned_cols=34 Identities=18% Similarity=0.184 Sum_probs=26.8
Q ss_pred EEEecccceeehhhhhhhhccccc-ceeeeceeecccc
Q psy9172 32 VIIEHMLYPITLDVLYQFDNYKFG-HAFSTSLAMPRDE 68 (80)
Q Consensus 32 viIeN~~YPVTldVLhqiFs~~fG-~Vlrq~~a~~~~~ 68 (80)
|.|.|+=+-+|=|-|...|+ +|| .|.. +-+++|+
T Consensus 4 i~v~nLp~~~te~~l~~~F~-~~G~~v~~--v~i~~d~ 38 (91)
T 2lxi_A 4 VMLRMLPQAATEDDIRGQLQ-SHGVQARE--VRLMRNK 38 (91)
T ss_dssp EEEETCCSSCCHHHHHHHHH-HHTCCCSB--CCSSSCS
T ss_pred EEEeCCCCCCCHHHHHHHHH-HhCCEeEE--EEEEecC
Confidence 57899999999999999999 999 6753 3444443
No 176
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=82.90 E-value=0.76 Score=31.72 Aligned_cols=32 Identities=13% Similarity=0.243 Sum_probs=27.4
Q ss_pred EEEEEecccceeehhhhhhhhcccccceeeece
Q psy9172 30 LRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL 62 (80)
Q Consensus 30 LrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~ 62 (80)
-+|.|.|+-+.+|-+-|..+|+ +||.|..-.+
T Consensus 23 ~~l~V~nLp~~~te~~l~~~F~-~~G~i~~v~i 54 (261)
T 3sde_A 23 CRLFVGNLPTDITEEDFKRLFE-RYGEPSEVFI 54 (261)
T ss_dssp GEEEEESCCTTCCHHHHHHHTG-GGCCCSEEEE
T ss_pred CEEEEECCCCCCCHHHHHHHHH-hcCCEEEEEE
Confidence 3677899999999999999999 9999975443
No 177
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=82.52 E-value=0.94 Score=30.39 Aligned_cols=36 Identities=11% Similarity=0.241 Sum_probs=29.3
Q ss_pred EEEEEecccceeehhhhhhhhcccccceeeeceeecccc
Q psy9172 30 LRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDE 68 (80)
Q Consensus 30 LrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~ 68 (80)
-.|.|.|+-+-+|-+-|..+|+ +||.|.. +.++.++
T Consensus 89 ~~l~V~nLp~~~te~~L~~~F~-~~G~I~~--v~i~~d~ 124 (177)
T 2f3j_A 89 AKLLVSNLDFGVSDADIQELFA-EFGTLKK--AAVDYDR 124 (177)
T ss_dssp EEEEEECCCSCCCHHHHHHHHH-HTSCCSE--EEECCCT
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-hcCCeEE--EEEEECC
Confidence 4677899999999999999999 9999954 4455543
No 178
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=82.16 E-value=0.43 Score=30.46 Aligned_cols=26 Identities=19% Similarity=0.286 Sum_probs=22.8
Q ss_pred EEEEecccceeehhhhhhhhcccccce
Q psy9172 31 RVIIEHMLYPITLDVLYQFDNYKFGHA 57 (80)
Q Consensus 31 rviIeN~~YPVTldVLhqiFs~~fG~V 57 (80)
+|-|.|+-+-+|-+-|..+|+ +||.|
T Consensus 6 ~l~V~nLp~~~te~~l~~~F~-~~g~i 31 (198)
T 2yh0_A 6 RLYVGNIPFGITEEAMMDFFN-AQMRL 31 (198)
T ss_dssp EEEEESCCTTCCHHHHHHHHH-HHHHH
T ss_pred EEEEcCCCCCCCHHHHHHHHH-HHHhh
Confidence 477899999999999999999 99643
No 179
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=81.75 E-value=1.3 Score=29.55 Aligned_cols=32 Identities=16% Similarity=0.199 Sum_probs=27.2
Q ss_pred EEEEecccceeehhhhhhhhcccccceeeecee
Q psy9172 31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLA 63 (80)
Q Consensus 31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a 63 (80)
.|-|-|+-+-+|-+-|..+|+ +||.|..=++.
T Consensus 17 tlfVgnLp~~~te~~L~~~F~-~~G~I~~v~i~ 48 (213)
T 4f02_A 17 SLYVGDLHPDVTEAMLYEKFS-PAGPILSIRVC 48 (213)
T ss_dssp EEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEE
T ss_pred EEEEeCCCCCCCHHHHHHHHH-hhCCEEEEEEe
Confidence 467899999999999999999 99999754443
No 180
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=81.43 E-value=1.2 Score=30.17 Aligned_cols=35 Identities=23% Similarity=0.281 Sum_probs=28.6
Q ss_pred EEEEecccceeehhhhhhhhcccccceeeeceeecccc
Q psy9172 31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDE 68 (80)
Q Consensus 31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~ 68 (80)
.|.|.|+-+.+|.+-|..+|+ +||.|.. +-|+++.
T Consensus 111 ~l~V~nLp~~~t~~~L~~~F~-~~G~v~~--v~i~~~~ 145 (193)
T 2voo_A 111 SVYIKGFPTDATLDDIKEWLE-DKGQVLN--IQMRRTL 145 (193)
T ss_dssp EEEEECCCTTCCHHHHHHHHT-TSCCEEE--EEEEECT
T ss_pred EEEecCCCCcCCHHHHHHHHh-cCCCEEE--EEEEECC
Confidence 477899999999999999999 9999964 4455443
No 181
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=81.13 E-value=1.3 Score=30.34 Aligned_cols=30 Identities=7% Similarity=0.061 Sum_probs=25.2
Q ss_pred EEEEecccceeehhhhhhhhcccccceeeece
Q psy9172 31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL 62 (80)
Q Consensus 31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~ 62 (80)
.|.|.|+=+.+|-+-|+.+|+ +|| |..-.+
T Consensus 24 ~l~V~nLp~~~te~~l~~~F~-~~G-i~~~~~ 53 (284)
T 3smz_A 24 KILIRGLPGDVTNQEVHDLLS-DYE-LKYCFV 53 (284)
T ss_dssp EEEEECCCTTCCHHHHHHHTT-TSC-EEEEEE
T ss_pred EEEEeCCCCCCCHHHHHHHHH-HcC-CEEEEE
Confidence 567899999999999999999 999 654433
No 182
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=81.13 E-value=0.78 Score=26.62 Aligned_cols=31 Identities=16% Similarity=0.149 Sum_probs=25.7
Q ss_pred EEEEecccceeehhhhhhhhcccccceeeece
Q psy9172 31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL 62 (80)
Q Consensus 31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~ 62 (80)
+|-|.|+-+.+|-+-|..+|+ +||.|.+...
T Consensus 10 ~l~V~nLp~~~t~~~l~~~F~-~~G~vv~~~~ 40 (93)
T 2cqh_A 10 KLYIGNLSPAVTADDLRQLFG-DRKLPLAGQV 40 (93)
T ss_dssp CEEEECCCTTCCHHHHHHHHH-HTTCCCSSCE
T ss_pred EEEEeCCCCCCCHHHHHHHHH-HcCCceEEEE
Confidence 567899999999999999999 9999543333
No 183
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=81.03 E-value=1.9 Score=28.00 Aligned_cols=38 Identities=16% Similarity=0.197 Sum_probs=30.5
Q ss_pred EEEEEecccceeehhhhhhhhcccccceeeeceeeccccc
Q psy9172 30 LRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDEL 69 (80)
Q Consensus 30 LrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~~ 69 (80)
-.|-|.|+-|-+|-+-|...|+ +| .|....+-+++|+.
T Consensus 43 ~~lfVgnLp~~~te~dL~~~F~-~~-~i~~~~v~i~~d~~ 80 (126)
T 2hgm_A 43 GFVRLRGLPFGCTKEEIVQFFS-GL-EIVPNGITLPVDPE 80 (126)
T ss_dssp CEEEEECCCTTCCHHHHHHHTT-TS-CEEEEEEECCCCSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHh-cC-CceeeEEEEEECCC
Confidence 4477899999999999999999 99 45544677777654
No 184
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=80.86 E-value=1.1 Score=28.93 Aligned_cols=35 Identities=9% Similarity=0.199 Sum_probs=27.4
Q ss_pred EEEEecccc-eeehhhhhhhhcccccceeeeceeecccc
Q psy9172 31 RVIIEHMLY-PITLDVLYQFDNYKFGHAFSTSLAMPRDE 68 (80)
Q Consensus 31 rviIeN~~Y-PVTldVLhqiFs~~fG~Vlrq~~a~~~~~ 68 (80)
.|-|.|+-+ -+|-+-|..+|+ +||.|.+ +.+..++
T Consensus 5 ~l~v~nlp~~~~~~~~l~~~F~-~~G~i~~--v~i~~~~ 40 (198)
T 1qm9_A 5 VLLVSNLNPERVTPQSLFILFG-VYGDVQR--VKILFNK 40 (198)
T ss_dssp EEEEECCCSSSCCHHHHHHHHH-TTCCCSE--EECSTTC
T ss_pred EEEEeCCCcccCCHHHHHHHHH-hcCCEEE--EEEEeCC
Confidence 356789988 899999999999 9999864 3344444
No 185
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=80.78 E-value=1 Score=29.82 Aligned_cols=48 Identities=13% Similarity=0.063 Sum_probs=34.1
Q ss_pred CCCCCCCCcEEEEEEecccce-eehhhhhhhhcccccceeeeceeeccccccCc
Q psy9172 20 TDTQGGPNTVLRVIIEHMLYP-ITLDVLYQFDNYKFGHAFSTSLAMPRDELAGF 72 (80)
Q Consensus 20 ~~~~~~pn~VLrviIeN~~YP-VTldVLhqiFs~~fG~Vlrq~~a~~~~~~~~~ 72 (80)
|...-.++.||. |.|+-+- +|-+-|..+|+ +||.|. .+-+..+..-||
T Consensus 11 ~~~~~~~G~il~--v~~l~~~~~sredLke~F~-~~G~V~--~Vd~~~g~~tgf 59 (121)
T 1owx_A 11 GSLEEKIGCLLK--FSGDLDDQTCREDLHILFS-NHGEIK--WIDFVRGAKEGI 59 (121)
T ss_dssp CCCSCCCCCEEE--EEESCCSSCCHHHHHHHTC-SSCCEE--EEECCTTCSEEE
T ss_pred CcccccCCeEEE--EecCCCCcCCHHHHHHHHH-hcCCEE--EEEEecCCCEEE
Confidence 344446666665 5588777 99999999999 999984 444555555566
No 186
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=79.78 E-value=0.76 Score=31.29 Aligned_cols=35 Identities=11% Similarity=0.144 Sum_probs=27.5
Q ss_pred EEEecccceeehhhhhhhhcccccceeeeceeeccc
Q psy9172 32 VIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRD 67 (80)
Q Consensus 32 viIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~ 67 (80)
+-|.|+=+.+|-+-|.++|+ +||.|...++.+..+
T Consensus 126 l~v~NLp~~~t~~~L~~~F~-~~G~v~~~~v~~~~~ 160 (205)
T 3tyt_A 126 LHFFNAPLEVTEENFFEICD-ELGVKRPTSVKVFSG 160 (205)
T ss_dssp EEEEEECTTCCHHHHHHHHH-HHTCCCCSEEEECSC
T ss_pred EEEeCCCCCCCHHHHHHHHH-hcCCcceEEEEEEcC
Confidence 45689999999999999999 999994444444444
No 187
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=78.84 E-value=2.5 Score=24.31 Aligned_cols=35 Identities=11% Similarity=0.217 Sum_probs=27.2
Q ss_pred EEEEEEecccceeehhhhhhhhcccccceeeeceeeccc
Q psy9172 29 VLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRD 67 (80)
Q Consensus 29 VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~ 67 (80)
--.|-|.|+-|.+|-+-|..+|+ +| .|.+ +-++.+
T Consensus 10 ~~~l~v~nLp~~~t~~~l~~~F~-~~-~i~~--v~i~~~ 44 (91)
T 2dgw_A 10 CHTVKLRGAPFNVTEKNVMEFLA-PL-KPVA--IRIVRN 44 (91)
T ss_dssp CCEEEEECCCSSCCHHHHHHHHT-TS-CCSE--EEEEEC
T ss_pred ccEEEEECCCCCCCHHHHHHHHh-hC-CceE--EEEEEC
Confidence 34577899999999999999999 99 7754 334444
No 188
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=77.97 E-value=1.1 Score=29.46 Aligned_cols=38 Identities=16% Similarity=0.148 Sum_probs=30.0
Q ss_pred cEEEEEEecccceeehhhhhhhhcccccceeeeceeeccccc
Q psy9172 28 TVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDEL 69 (80)
Q Consensus 28 ~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~~ 69 (80)
+--.|-|.|+-|-+|-|-|...|+ +|| +. ++.+++|+.
T Consensus 45 ~~~~lfV~nLp~~~te~dL~~~F~-~~G-i~--~v~i~~d~~ 82 (139)
T 2hgn_A 45 TGHCVHMRGLPYKATENDIYNFFS-PLN-PV--RVHIEIGPD 82 (139)
T ss_dssp CCCCEECCSCCTTCCHHHHHHHHC-SCC-CS--EEECCCSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH-hcC-Ce--EEEEEECCC
Confidence 334577899999999999999999 999 43 466666654
No 189
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=77.90 E-value=1.5 Score=29.89 Aligned_cols=32 Identities=13% Similarity=0.030 Sum_probs=27.1
Q ss_pred EEEEecccceeehhhhhhhhcccccceeeecee
Q psy9172 31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLA 63 (80)
Q Consensus 31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a 63 (80)
.|.|.|+-+-+|-+-|..+|+ +||.|.+-++.
T Consensus 209 ~l~v~nl~~~~~~~~l~~~F~-~~G~i~~v~~~ 240 (282)
T 3pgw_A 209 ILFLTNLPEETNELMLSMLFN-QFPGFKEVRLV 240 (282)
T ss_pred EEEEeCCCCcCCHHHHHHHHH-hcCCeEEEEEe
Confidence 366899999999999999999 99999765443
No 190
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=77.76 E-value=0.77 Score=28.61 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=21.7
Q ss_pred EEEEecccceeehhhhhhhhccccc
Q psy9172 31 RVIIEHMLYPITLDVLYQFDNYKFG 55 (80)
Q Consensus 31 rviIeN~~YPVTldVLhqiFs~~fG 55 (80)
+|-|.|+-+-+|-+-|...|+ +||
T Consensus 6 ~l~V~nLp~~~t~~~l~~~F~-~~g 29 (172)
T 2g4b_A 6 RLYVGNIPFGITEEAMMDFFN-AQM 29 (172)
T ss_dssp EEEEESCCTTCCHHHHHHHHH-HHH
T ss_pred EEEEcCCCcccCHHHHHHHHH-HHh
Confidence 467889999999999999999 994
No 191
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=77.75 E-value=1 Score=28.92 Aligned_cols=38 Identities=8% Similarity=0.054 Sum_probs=29.1
Q ss_pred EEEEEecccceeehhhhhhhhccccccee--eeceeecccc
Q psy9172 30 LRVIIEHMLYPITLDVLYQFDNYKFGHAF--STSLAMPRDE 68 (80)
Q Consensus 30 LrviIeN~~YPVTldVLhqiFs~~fG~Vl--rq~~a~~~~~ 68 (80)
-.|-|.|+-|-+|-+-|...|+ +||.|. -..+-++.++
T Consensus 24 ~~v~V~nLp~~~te~dl~~~F~-~~g~v~g~v~~v~i~~d~ 63 (123)
T 2dha_A 24 VIVRMRGLPFTATAEEVVAFFG-QHCPITGGKEGILFVTYP 63 (123)
T ss_dssp CEEEECSCCTTCCHHHHHHHHH-TTSCCTTGGGGEEEEECT
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-hhCCccCCcceEEEEECC
Confidence 3567889999999999999999 999862 2345555543
No 192
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=77.67 E-value=1.7 Score=28.42 Aligned_cols=40 Identities=5% Similarity=0.007 Sum_probs=29.5
Q ss_pred EEEEEEecccceeehhhhhhhhccccccee-eeceeeccccc
Q psy9172 29 VLRVIIEHMLYPITLDVLYQFDNYKFGHAF-STSLAMPRDEL 69 (80)
Q Consensus 29 VLrviIeN~~YPVTldVLhqiFs~~fG~Vl-rq~~a~~~~~~ 69 (80)
--.|-|.|+-|-+|-+-|...|+ +||.|. -..+-+++++.
T Consensus 44 ~~~lfVgnLp~~~te~dL~~~F~-~~G~v~~v~~v~i~~d~~ 84 (136)
T 2hgl_A 44 GFVVKLRGLPWSCSVEDVQNFLS-DCTIHDGAAGVHFIYTRE 84 (136)
T ss_dssp TCEEEEESCCTTCCHHHHHHHTT-TCCCSSSSTTEEEEECSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-HhCCcCceeEEEEEECCC
Confidence 34567899999999999999999 999931 12344555543
No 193
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=77.52 E-value=1.5 Score=27.15 Aligned_cols=37 Identities=5% Similarity=0.036 Sum_probs=28.9
Q ss_pred EEEEEEecccceeehhhhhhhhcccccc---eeeeceeecccc
Q psy9172 29 VLRVIIEHMLYPITLDVLYQFDNYKFGH---AFSTSLAMPRDE 68 (80)
Q Consensus 29 VLrviIeN~~YPVTldVLhqiFs~~fG~---Vlrq~~a~~~~~ 68 (80)
--.|-|.|+-|-+|-+-|...|+ +||. |. .+-++.++
T Consensus 17 ~~~l~V~nLp~~~te~~l~~~F~-~~G~~~~v~--~v~i~~~~ 56 (118)
T 2db1_A 17 GYVVKLRGLPWSCSIEDVQNFLS-DCTIHDGVA--GVHFIYTR 56 (118)
T ss_dssp CCEEEEESCCTTCCHHHHHHHTT-TSCBTTGGG--GEEEEECS
T ss_pred CcEEEEeCCCCCCCHHHHHHHHH-HcCCccCce--eEEEEECC
Confidence 44577899999999999999999 9999 54 34444443
No 194
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=77.40 E-value=0.83 Score=28.22 Aligned_cols=15 Identities=13% Similarity=0.186 Sum_probs=10.7
Q ss_pred hhh-cccccceeeecee
Q psy9172 48 QFD-NYKFGHAFSTSLA 63 (80)
Q Consensus 48 qiF-s~~fG~Vlrq~~a 63 (80)
..| + +||.|.+-.+.
T Consensus 45 ~~f~~-~~G~V~~v~i~ 60 (104)
T 1jmt_A 45 TEMEE-KYGEVEEMNVC 60 (104)
T ss_dssp HHHHH-HTCCEEEEEEC
T ss_pred HHhhc-cCCceEEEEEE
Confidence 444 9 99999875554
No 195
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=74.78 E-value=2.2 Score=28.72 Aligned_cols=40 Identities=18% Similarity=0.312 Sum_probs=29.7
Q ss_pred CCCCcEEEEEEecccc-eeehhhhhhhhcccccceeeeceeecccc
Q psy9172 24 GGPNTVLRVIIEHMLY-PITLDVLYQFDNYKFGHAFSTSLAMPRDE 68 (80)
Q Consensus 24 ~~pn~VLrviIeN~~Y-PVTldVLhqiFs~~fG~Vlrq~~a~~~~~ 68 (80)
+.+++.| -|.|+-+ -+|-+-|..+|+ +||.|.+- -+..++
T Consensus 31 ~~~~~~l--~V~nLp~~~~te~~L~~~F~-~~G~i~~v--~i~~~~ 71 (229)
T 2adc_A 31 GAGNSVL--LVSNLNPERVTPQSLFILFG-VYGDVQRV--KILFNK 71 (229)
T ss_dssp CCCCSEE--EEESCCTTTCCHHHHHHHHH-HHTCEEEE--EECCTT
T ss_pred CCCCCEE--EEeCCCcccCCHHHHHHHHH-hCCCeEEE--EEEECC
Confidence 3455544 4789988 899999999999 99999643 344444
No 196
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=73.97 E-value=2.5 Score=28.40 Aligned_cols=41 Identities=7% Similarity=0.032 Sum_probs=29.7
Q ss_pred EEEEEecccceeehhhhhhhhccccc-ceeeeceeeccccccCc
Q psy9172 30 LRVIIEHMLYPITLDVLYQFDNYKFG-HAFSTSLAMPRDELAGF 72 (80)
Q Consensus 30 LrviIeN~~YPVTldVLhqiFs~~fG-~Vlrq~~a~~~~~~~~~ 72 (80)
-.|.|.|+-+.+|-+-|.++|+ +|| .|..-. .++.++--||
T Consensus 152 ~~l~V~nlp~~~t~~~l~~~f~-~~G~~i~~v~-i~~~~~g~af 193 (229)
T 2adc_A 152 ATLHLSNIPPSVSEEDLKVLFS-SNGGVVKGFK-FFQKDRKMAL 193 (229)
T ss_dssp SEEEEECCCTTCCHHHHHHHHH-TTSCCEEEEE-ECSSSTTCEE
T ss_pred CEEEEeCCCccCCHHHHHHHHH-HcCCCeeEEE-EEECCCcEEE
Confidence 3466889999999999999999 999 775433 3354444443
No 197
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=73.85 E-value=1.7 Score=28.03 Aligned_cols=39 Identities=8% Similarity=0.026 Sum_probs=28.2
Q ss_pred EEEEecccceeehhhhhhhhccccc-ceeeeceeeccccccC
Q psy9172 31 RVIIEHMLYPITLDVLYQFDNYKFG-HAFSTSLAMPRDELAG 71 (80)
Q Consensus 31 rviIeN~~YPVTldVLhqiFs~~fG-~Vlrq~~a~~~~~~~~ 71 (80)
.+.|.|+-+.+|-+-|.++|+ +|| .|.+-. .++.++--|
T Consensus 122 ~l~v~nl~~~~~~~~l~~~f~-~~G~~v~~v~-i~~~~~g~a 161 (198)
T 1qm9_A 122 TLHLSNIPPSVSEEDLKVLFS-SNGGVVKGFK-FFQKDRKMA 161 (198)
T ss_dssp EEEECCCCTTCCHHHHHHHHH-HTTSCCCEEE-ESSTTSSCE
T ss_pred EEEEeCCCCCCCHHHHHHHHH-HcCCCceEEE-EEeCCCcEE
Confidence 355789999999999999999 999 775433 234344333
No 198
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.57 E-value=1.8 Score=26.92 Aligned_cols=22 Identities=27% Similarity=0.446 Sum_probs=18.3
Q ss_pred eeehhhhhhhhcccccceeeece
Q psy9172 40 PITLDVLYQFDNYKFGHAFSTSL 62 (80)
Q Consensus 40 PVTldVLhqiFs~~fG~Vlrq~~ 62 (80)
-+|-+-|..+|+ +||.|..-.+
T Consensus 28 ~~te~~L~~~F~-~~G~V~~v~i 49 (100)
T 2d9o_A 28 GYSKDVLLRLLQ-KYGEVLNLVL 49 (100)
T ss_dssp SCCHHHHHHHHH-TTSCEEEEEE
T ss_pred CCCHHHHHHHHH-hcCCEEEEEE
Confidence 478899999999 9999975443
No 199
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=72.71 E-value=2.3 Score=23.96 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=21.4
Q ss_pred EEEEecccceeehhhhhhhhcccc
Q psy9172 31 RVIIEHMLYPITLDVLYQFDNYKF 54 (80)
Q Consensus 31 rviIeN~~YPVTldVLhqiFs~~f 54 (80)
+|-|.|+-+-+|-+-|...|+ +|
T Consensus 8 ~l~V~nLp~~~t~~~l~~~F~-~~ 30 (87)
T 2hzc_A 8 RLYVGNIPFGITEEAMMDFFN-AQ 30 (87)
T ss_dssp EEEEESCCTTCCHHHHHHHHH-HH
T ss_pred EEEEeCCCCCCCHHHHHHHHH-HH
Confidence 577899999999999999999 99
No 200
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=71.51 E-value=2.8 Score=24.16 Aligned_cols=30 Identities=0% Similarity=0.036 Sum_probs=25.2
Q ss_pred EEEEecccceeehhhhhhhhcccccceeeece
Q psy9172 31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL 62 (80)
Q Consensus 31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~ 62 (80)
+|-|.|+-+-+|-+-|..+|+ +| .|.+-.+
T Consensus 7 ~l~V~nLp~~~t~~~l~~~F~-~~-~v~~~~i 36 (88)
T 1wg1_A 7 GILVKNLPQDSNCQEVHDLLK-DY-DLKYCYV 36 (88)
T ss_dssp CEEEESCCSSCCHHHHHHHTC-SS-CCCCEEE
T ss_pred EEEEeCCCCCCCHHHHHHHHh-hC-CeEEEEE
Confidence 467899999999999999999 99 7765444
No 201
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=63.24 E-value=5 Score=27.64 Aligned_cols=34 Identities=9% Similarity=0.024 Sum_probs=28.3
Q ss_pred EEEEecc----cceeehhhhhhhhcccccceeeeceeec
Q psy9172 31 RVIIEHM----LYPITLDVLYQFDNYKFGHAFSTSLAMP 65 (80)
Q Consensus 31 rviIeN~----~YPVTldVLhqiFs~~fG~Vlrq~~a~~ 65 (80)
-|.|-|+ -|-+|-+-|...|+ .||.|..=++.+-
T Consensus 4 kI~VgnL~~~~~~~tte~~Lk~~Fs-~fGeV~~~~li~D 41 (136)
T 2j8a_A 4 EIVVYPAQDSTTTNIQDISIKNYFK-KYGEISHFEAFND 41 (136)
T ss_dssp EEEEEESSSSCCCCCCHHHHHHHHH-TTSCCSEEEEEEC
T ss_pred EEEEeCCCCCCCCCCCHHHHHHHHH-hcCCeEEEEEEec
Confidence 3678899 89999999999999 9999976555443
No 202
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=62.40 E-value=2.4 Score=26.51 Aligned_cols=33 Identities=9% Similarity=-0.045 Sum_probs=27.5
Q ss_pred CCcEEEEEEecccceeehhhhhhhhcccccceee
Q psy9172 26 PNTVLRVIIEHMLYPITLDVLYQFDNYKFGHAFS 59 (80)
Q Consensus 26 pn~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlr 59 (80)
+.+=-.|-|.|+-+-+|-+-|...|+ .||.+..
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~-~~g~~~~ 42 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAIS-ELFAKND 42 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHH-HHHHHHT
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHH-HhCCcce
Confidence 33445677899999999999999999 9998765
No 203
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=59.25 E-value=5.9 Score=28.61 Aligned_cols=42 Identities=12% Similarity=0.097 Sum_probs=29.3
Q ss_pred CCcEEEEEEeccccee---------ehhhhhhhhcccccceeeeceeeccccccCc
Q psy9172 26 PNTVLRVIIEHMLYPI---------TLDVLYQFDNYKFGHAFSTSLAMPRDELAGF 72 (80)
Q Consensus 26 pn~VLrviIeN~~YPV---------TldVLhqiFs~~fG~Vlrq~~a~~~~~~~~~ 72 (80)
+++-| -|.|+-+.+ |-+.|...|+ +||.|.+=.+ ...+--||
T Consensus 133 ~~rtL--fVgnL~~~~~~~~~~~~~tEe~L~~~F~-~fG~I~~v~v--~~~kG~AF 183 (240)
T 3u1l_A 133 KNKTL--YVGGIDGALNSKHLKPAQIESRIRFVFS-RLGDIDRIRY--VESKNCGF 183 (240)
T ss_dssp CCCEE--EEECTTGGGTTCCCCHHHHHHHHHHHHH-TTSCEEEEEE--EGGGTEEE
T ss_pred CCcee--ecCCCChhhhcccccccCcHHHHHHHHH-ccCCEEEEEE--ECCCCEEE
Confidence 34444 467887777 7899999999 9999975443 34444444
No 204
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.46 E-value=9.6 Score=23.65 Aligned_cols=36 Identities=14% Similarity=0.209 Sum_probs=29.0
Q ss_pred EEEEEecccceeehhhhhhhhcccccceeeeceeeccccc
Q psy9172 30 LRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDEL 69 (80)
Q Consensus 30 LrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~~ 69 (80)
..|-|.|+-|-+|-+-|...|+ +| .|. .+.++.++.
T Consensus 17 ~~v~V~nLp~~~te~dl~~~F~-~~-~v~--~v~i~~d~~ 52 (109)
T 2dnn_A 17 LYVSVHGMPFSAMENDVRDFFH-GL-RVD--AVHLLKDHV 52 (109)
T ss_dssp HEEEEECCCSSCCHHHHHHHTT-TS-CCC--EEEECCCTT
T ss_pred CEEEEeCCCCCCCHHHHHHHhc-cC-Cee--EEEEEECCC
Confidence 4688999999999999999999 99 663 455666543
No 205
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=51.81 E-value=13 Score=23.68 Aligned_cols=41 Identities=20% Similarity=0.242 Sum_probs=26.5
Q ss_pred CCCCCcEEEEEEec-----cccee-ehhhhhhhhcccccceeeeceee
Q psy9172 23 QGGPNTVLRVIIEH-----MLYPI-TLDVLYQFDNYKFGHAFSTSLAM 64 (80)
Q Consensus 23 ~~~pn~VLrviIeN-----~~YPV-TldVLhqiFs~~fG~Vlrq~~a~ 64 (80)
+++|-.-+.|.+.+ -.||- =++-|.+.|+ +||.|..-+++.
T Consensus 3 ~GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~-~~G~Vi~vr~~~ 49 (91)
T 2dnr_A 3 SGSSGGTVLVSIKSSLPENNFFDDALIDELLQQFA-SFGEVILIRFVE 49 (91)
T ss_dssp CCCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHH-TTCCEEEEEECS
T ss_pred CCCCCCeEEEEeccCccccccCCHHHHHHHHHHHH-hCCCeEEEEEec
Confidence 34555556666654 23562 2355899999 999998766554
No 206
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.55 E-value=11 Score=21.84 Aligned_cols=27 Identities=11% Similarity=-0.050 Sum_probs=22.9
Q ss_pred EEEEecccceeehhhhhhhhccccccee
Q psy9172 31 RVIIEHMLYPITLDVLYQFDNYKFGHAF 58 (80)
Q Consensus 31 rviIeN~~YPVTldVLhqiFs~~fG~Vl 58 (80)
.|-|.|+-+-+|-+-|..+|+ .|+.|.
T Consensus 17 ~l~V~nLp~~~t~~~l~~~F~-~~~~~~ 43 (102)
T 2fc8_A 17 TLFVKGLSEDTTEETLKESFD-GSVRAR 43 (102)
T ss_dssp SEEEECCCTTCCHHHHHHTST-TCSEEE
T ss_pred EEEEeCCCCccCHHHHHHHhc-CCeEEE
Confidence 456789999999999999999 997553
No 207
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=33.10 E-value=19 Score=23.89 Aligned_cols=32 Identities=16% Similarity=0.230 Sum_probs=20.8
Q ss_pred Eecccceeeh-----hhhhhhhcccccceeeeceeecc
Q psy9172 34 IEHMLYPITL-----DVLYQFDNYKFGHAFSTSLAMPR 66 (80)
Q Consensus 34 IeN~~YPVTl-----dVLhqiFs~~fG~Vlrq~~a~~~ 66 (80)
+.|++-|-.+ +-|..-|+ +||.|.+=++..+.
T Consensus 129 l~n~v~~~e~~~e~~~dl~~e~~-~~G~v~~~~v~~~~ 165 (222)
T 3dxb_A 129 LRNMVDPKDIDDDLEGEVTEECG-KFGAVNRVIIYQEK 165 (222)
T ss_dssp EESSCCGGGCCTTHHHHHHHHHT-TTSCEEEEEEEEEE
T ss_pred hhcCCCHHHHHHHHHHHHHHHHH-ccCCeEEEEEecCC
Confidence 4566544322 45788999 99999866555443
No 208
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=29.07 E-value=29 Score=22.37 Aligned_cols=42 Identities=17% Similarity=0.179 Sum_probs=26.9
Q ss_pred CCCCCCcEEEEEEec------ccceee-hhhhhhhhcccccceeeeceee
Q psy9172 22 TQGGPNTVLRVIIEH------MLYPIT-LDVLYQFDNYKFGHAFSTSLAM 64 (80)
Q Consensus 22 ~~~~pn~VLrviIeN------~~YPVT-ldVLhqiFs~~fG~Vlrq~~a~ 64 (80)
.+++|-.-+.|.+.+ -.||-. ++-|.+.|+ .||.|..-+++.
T Consensus 10 ~~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~-~~G~Vilvr~v~ 58 (95)
T 1ufw_A 10 FQGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLG-SYGTIVLVRINQ 58 (95)
T ss_dssp CCCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHH-HHSCCSEEEEET
T ss_pred ecCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHH-HCCCEEEEEEec
Confidence 455666666677643 346622 244899999 999887665443
Done!