RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy9172
         (80 letters)



>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide
          binding, RNA recognition motif; 1.40A {Homo sapiens}
          PDB: 3zzz_A
          Length = 130

 Score = 44.2 bits (104), Expect = 1e-07
 Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 5  SAQAALQAAQALTGQTDTQGGPNTVLRVIIEHMLYPITLDVLYQ-FDNY 52
          S   AL A+ A         G + VLR+I+E++ YP+TLDVL+Q F  +
Sbjct: 4  SGNLALAASAAAVDAGMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKF 52


>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD,
          structural genomics, NPPSFA; NMR {Mus musculus}
          Length = 124

 Score = 42.0 bits (98), Expect = 1e-06
 Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 18 GQTDTQGGPNTVLRVIIEHMLYPITLDVLYQ-FDNY 52
          G TD   G N VL + I++ LYPIT+DVLY   +  
Sbjct: 14 GNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVCNPV 49


>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif,
          RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
          PDB: 2adb_A
          Length = 164

 Score = 42.0 bits (98), Expect = 2e-06
 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 2  NSASAQAALQAAQALTGQTDTQGGPNTVLRVIIEHMLYPITLDVLYQ-FDNY 52
          +  S   AL A+ A         G + VLR+I+E++ YP+TLDVL+Q F  +
Sbjct: 19 SVQSGNLALAASAAAVDAGMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKF 70


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 27.9 bits (61), Expect = 0.35
 Identities = 14/65 (21%), Positives = 19/65 (29%), Gaps = 18/65 (27%)

Query: 2   NSASAQAALQAAQALTGQTDTQGGPN---------------TVLRVIIEHMLYPITLDVL 46
           N  S +  L+  Q L  Q D                       LR +++   Y   L VL
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL 250

Query: 47  YQFDN 51
               N
Sbjct: 251 ---LN 252


>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6
           motif two domain P transport protein; HET: NAG B12;
           2.60A {Homo sapiens} PDB: 3kq4_A*
          Length = 399

 Score = 24.0 bits (51), Expect = 7.4
 Identities = 16/55 (29%), Positives = 20/55 (36%), Gaps = 2/55 (3%)

Query: 12  AAQALT-GQTDTQGGPNTVLRVIIEHMLYPITLDVL-YQFDNYKFGHAFSTSLAM 64
           A  ALT        G     R +   +L  I   +     DN   G  +ST LAM
Sbjct: 158 ATLALTCMYNKIPVGSEEGYRSLFGQVLKDIVEKISMKIKDNGIIGDIYSTGLAM 212


>2ahf_A Unsaturated glucuronyl hydrolase; alpha6/alpha6 barrel, glycoside
           hydrolase family 88; 1.52A {Bacillus SP} PDB: 2ahg_A*
           2fv0_A* 2fv1_A* 2d5j_A 1vd5_A 2fuz_A
          Length = 377

 Score = 23.8 bits (51), Expect = 9.0
 Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 13/57 (22%)

Query: 2   NSASAQAALQAAQALTGQTDTQGG----------PNTVLRVIIEHMLYPITLDVLYQ 48
           + ++ + AL AA  L  +     G          P    R+II+ +L    L +L  
Sbjct: 106 DESARKLALDAADVLMRRWRADAGIIQAWGPKGDPENGGRIIIDCLL---NLPLLLW 159


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.318    0.129    0.361 

Gapped
Lambda     K      H
   0.267   0.0549    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,136,941
Number of extensions: 54792
Number of successful extensions: 108
Number of sequences better than 10.0: 1
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 9
Length of query: 80
Length of database: 6,701,793
Length adjustment: 49
Effective length of query: 31
Effective length of database: 5,333,664
Effective search space: 165343584
Effective search space used: 165343584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.8 bits)