RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9172
         (80 letters)



>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 108

 Score = 30.4 bits (68), Expect = 0.007
 Identities = 14/25 (56%), Positives = 21/25 (84%)

Query: 25 GPNTVLRVIIEHMLYPITLDVLYQF 49
          G + VLR+I+E++ YP+TLDVL+Q 
Sbjct: 3  GQSPVLRIIVENLFYPVTLDVLHQI 27


>d1px5a1 a.160.1.2 (A:201-346) 2'-5'-oligoadenylate synthetase 1,
          OAS1, second domain {Pig (Sus scrofa) [TaxId: 9823]}
          Length = 146

 Score = 29.1 bits (65), Expect = 0.036
 Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 12 AAQALTGQT--DTQGGPNTVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPR 66
          A +  + +T   T  G  TVL ++++H    I  +  Y F N   G      L  PR
Sbjct: 39 AWEQGSRKTDFSTAQGFQTVLELVLKHQKLCIFWEAYYDFTNPVVGRCMLQQLKKPR 95


>d1j5ya2 d.94.2.1 (A:68-174) Putative transcriptional regulator
          TM1602, C-terminal domain {Thermotoga maritima [TaxId:
          2336]}
          Length = 107

 Score = 23.4 bits (51), Expect = 3.3
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 5/51 (9%)

Query: 24 GGPNTVLRVIIEHMLYP-IT--LDVLYQFDNYKFGHAFSTSLAMPRDELAG 71
          GG   ++ VI+EH +Y  I   +DV  + +  KF +    +   P   L+G
Sbjct: 28 GG--RIVDVIVEHPVYGEIRGIIDVSSEEEVLKFVNLMEMAKTEPLLTLSG 76


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.129    0.361 

Gapped
Lambda     K      H
   0.267   0.0552    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 256,672
Number of extensions: 8958
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 4
Length of query: 80
Length of database: 2,407,596
Length adjustment: 46
Effective length of query: 34
Effective length of database: 1,776,016
Effective search space: 60384544
Effective search space used: 60384544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.3 bits)