BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9174
(127 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2E4Z|A Chain A, Crystal Structure Of The Ligand-Binding Region Of The
Group Iii Metabotropic Glutamate Receptor
Length = 501
Score = 80.5 bits (197), Expect = 3e-16, Method: Composition-based stats.
Identities = 39/89 (43%), Positives = 58/89 (65%), Gaps = 3/89 (3%)
Query: 41 SKYSAEISGDVLLGGLMMIHSRSESSV-CGPIMAQGGIQALETMLYTIDRINAE--LTMN 97
+ +S I GDV LGGL +H++ S V CG I + GI LE MLY +D+IN++ L N
Sbjct: 7 APHSIRIEGDVTLGGLFPVHAKGPSGVPCGDIKRENGIHRLEAMLYALDQINSDPNLLPN 66
Query: 98 LTLGAHVLDDCDQDTHGLEMAVDFIKGRV 126
+TLGA +LD C +DT+ LE ++ F++ +
Sbjct: 67 VTLGARILDTCSRDTYALEQSLTFVQALI 95
>pdb|3MQ4|A Chain A, Metabotropic Glutamate Receptor Mglur7 Complexed With
Ly3414 Antagonist
Length = 481
Score = 79.0 bits (193), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 56/84 (66%), Gaps = 3/84 (3%)
Query: 43 YSAEISGDVLLGGLMMIHSRSESSV-CGPIMAQGGIQALETMLYTIDRINAELTM--NLT 99
+S I GDV LGGL +H++ S V CG I + GI LE MLY +D+IN++ + N+T
Sbjct: 9 HSIRIEGDVTLGGLFPVHAKGPSGVPCGDIKRENGIHRLEAMLYALDQINSDPNLLPNVT 68
Query: 100 LGAHVLDDCDQDTHGLEMAVDFIK 123
LGA +LD C +DT+ LE ++ F++
Sbjct: 69 LGARILDTCSRDTYALEQSLTFVQ 92
>pdb|3SM9|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor 3
Precursor In Presence Of Ly341495 Antagonist
Length = 479
Score = 68.6 bits (166), Expect = 9e-13, Method: Composition-based stats.
Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 3/84 (3%)
Query: 46 EISGDVLLGGLMMIHSR-SESSVCGPIMAQGGIQALETMLYTIDRINAE--LTMNLTLGA 102
+I GD++LGGL I+ + + + CG I GIQ LE ML+ ID IN + L + LG
Sbjct: 9 KIEGDLVLGGLFPINEKGTGTEECGRINEDRGIQRLEAMLFAIDEINKDDYLLPGVKLGV 68
Query: 103 HVLDDCDQDTHGLEMAVDFIKGRV 126
H+LD C +DT+ LE +++F++ +
Sbjct: 69 HILDTCSRDTYALEQSLEFVRASL 92
>pdb|2E4U|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
L-glutamate
pdb|2E4U|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
L-glutamate
pdb|2E4V|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With Dcg-Iv
pdb|2E4V|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With Dcg-Iv
pdb|2E4W|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3s-Acpd
pdb|2E4W|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3s-Acpd
pdb|2E4X|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3r-Acpd
pdb|2E4X|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3r-Acpd
pdb|2E4Y|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
2r,4r-Apdc
pdb|2E4Y|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
2r,4r-Apdc
Length = 555
Score = 68.6 bits (166), Expect = 9e-13, Method: Composition-based stats.
Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 3/84 (3%)
Query: 46 EISGDVLLGGLMMIHSR-SESSVCGPIMAQGGIQALETMLYTIDRINAE--LTMNLTLGA 102
+I GD++LGGL I+ + + + CG I GIQ LE ML+ ID IN + L + LG
Sbjct: 10 KIEGDLVLGGLFPINEKGTGTEECGRINEDRGIQRLEAMLFAIDEINKDNYLLPGVKLGV 69
Query: 103 HVLDDCDQDTHGLEMAVDFIKGRV 126
H+LD C +DT+ LE +++F++ +
Sbjct: 70 HILDTCSRDTYALEQSLEFVRASL 93
>pdb|1EWK|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With Glutamate
pdb|1EWK|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With Glutamate
pdb|1EWT|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form I
pdb|1EWT|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form I
pdb|1EWV|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form Ii
pdb|1EWV|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form Ii
pdb|1ISR|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With Glutamate And Gadolinium Ion
pdb|1ISS|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With An Antagonist
pdb|1ISS|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With An Antagonist
Length = 490
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 51/86 (59%), Gaps = 7/86 (8%)
Query: 45 AEISGDVLLGGLMMIHSRSESSV-----CGPIMAQGGIQALETMLYTIDRINAE--LTMN 97
A + GDV++G L +H + + CG I Q GIQ +E M +T+D+INA+ L N
Sbjct: 7 ARMDGDVIIGALFSVHHQPPAEKVPERKCGEIREQYGIQRVEAMFHTLDKINADPVLLPN 66
Query: 98 LTLGAHVLDDCDQDTHGLEMAVDFIK 123
+TLG+ + D C + LE +++FI+
Sbjct: 67 ITLGSEIRDSCWHSSVALEQSIEFIR 92
>pdb|3KS9|A Chain A, Metabotropic Glutamate Receptor Mglur1 Complexed With
Ly341495 Antagonist
pdb|3KS9|B Chain B, Metabotropic Glutamate Receptor Mglur1 Complexed With
Ly341495 Antagonist
Length = 496
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 51/86 (59%), Gaps = 7/86 (8%)
Query: 45 AEISGDVLLGGLMMIHSRSESSV-----CGPIMAQGGIQALETMLYTIDRINAE--LTMN 97
A + GDV++G L +H + + CG I Q GIQ +E M +T+D+INA+ L N
Sbjct: 12 ARMDGDVIIGALFSVHHQPPAEKVPERKCGEIREQYGIQRVEAMFHTLDKINADPVLLPN 71
Query: 98 LTLGAHVLDDCDQDTHGLEMAVDFIK 123
+TLG+ + D C + LE +++FI+
Sbjct: 72 ITLGSEIRDSCWHSSVALEQSIEFIR 97
>pdb|3LMK|A Chain A, Ligand Binding Domain Of Metabotropoc Glutamate Receptor
Mglur5 Complexed With Glutamate
pdb|3LMK|B Chain B, Ligand Binding Domain Of Metabotropoc Glutamate Receptor
Mglur5 Complexed With Glutamate
Length = 492
Score = 62.4 bits (150), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 7/86 (8%)
Query: 45 AEISGDVLLGGLMMIH-----SRSESSVCGPIMAQGGIQALETMLYTIDRINAELTM--N 97
A + GD+++G L +H + CG + Q GIQ +E ML+T++RIN++ T+ N
Sbjct: 16 AHMPGDIIIGALFSVHHQPTVDKVHERKCGAVREQYGIQRVEAMLHTLERINSDPTLLPN 75
Query: 98 LTLGAHVLDDCDQDTHGLEMAVDFIK 123
+TLG + D C LE +++FI+
Sbjct: 76 ITLGCEIRDSCWHSAVALEQSIEFIR 101
>pdb|2W7T|A Chain A, Trypanosoma Brucei Ctps - Glutaminase Domain With Bound
Acivicin
Length = 273
Score = 29.3 bits (64), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 7/41 (17%)
Query: 11 ILLTLQMTLILASPPMTKGP-------AQAKLDYIWPSKYS 44
L +Q S PM P A AK DY+WP K S
Sbjct: 226 FFLAVQFHPEFISTPMDPAPTYLSFMAAAAKKDYVWPQKCS 266
>pdb|3DDL|A Chain A, Crystallographic Structure Of Xanthorhodopsin, A Light-
Driven Ion Pump With Dual Chromophore
pdb|3DDL|B Chain B, Crystallographic Structure Of Xanthorhodopsin, A Light-
Driven Ion Pump With Dual Chromophore
Length = 273
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 23/35 (65%)
Query: 4 INFEIRVILLTLQMTLILASPPMTKGPAQAKLDYI 38
+++ + V LLT+++ L++ P +GP AKL ++
Sbjct: 95 VDWLLTVPLLTVELVLVMGLPKNERGPLAAKLGFL 129
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,138,576
Number of Sequences: 62578
Number of extensions: 99310
Number of successful extensions: 229
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 209
Number of HSP's gapped (non-prelim): 10
length of query: 127
length of database: 14,973,337
effective HSP length: 87
effective length of query: 40
effective length of database: 9,529,051
effective search space: 381162040
effective search space used: 381162040
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)