Query psy9174
Match_columns 127
No_of_seqs 150 out of 978
Neff 5.9
Searched_HMMs 46136
Date Fri Aug 16 20:44:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9174.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9174hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd06374 PBP1_mGluR_groupI Liga 99.9 2E-21 4.4E-26 163.8 9.0 81 44-124 3-90 (472)
2 cd06364 PBP1_CaSR Ligand-bindi 99.8 6.7E-20 1.5E-24 157.1 9.9 81 43-124 5-98 (510)
3 cd06375 PBP1_mGluR_groupII Lig 99.8 5.3E-20 1.2E-24 155.5 9.0 76 49-124 1-79 (458)
4 cd06365 PBP1_Pheromone_recepto 99.8 9.9E-20 2.1E-24 154.1 8.9 75 49-124 1-88 (469)
5 KOG1056|consensus 99.8 2.6E-19 5.7E-24 161.6 10.2 83 43-125 24-108 (878)
6 cd06361 PBP1_GPC6A_like Ligand 99.7 2.5E-16 5.4E-21 131.3 8.4 72 52-124 1-83 (403)
7 cd06376 PBP1_mGluR_groupIII Li 99.6 2.5E-15 5.4E-20 126.4 8.9 76 49-124 1-79 (463)
8 cd06362 PBP1_mGluR Ligand bind 99.6 5.9E-15 1.3E-19 122.9 8.6 76 49-124 1-79 (452)
9 cd06363 PBP1_Taste_receptor Li 99.4 1.1E-12 2.4E-17 108.5 9.3 77 45-123 1-89 (410)
10 cd06350 PBP1_GPCR_family_C_lik 99.0 1.3E-09 2.8E-14 86.8 7.9 72 52-124 1-76 (348)
11 cd06393 PBP1_iGluR_Kainate_Glu 98.1 6.5E-06 1.4E-10 67.7 6.4 64 51-122 3-69 (384)
12 cd06269 PBP1_glutamate_recepto 98.0 4.9E-05 1.1E-09 57.6 8.2 65 52-124 1-65 (298)
13 cd06382 PBP1_iGluR_Kainate N-t 97.8 4.6E-05 9.9E-10 60.7 6.5 58 53-124 2-62 (327)
14 cd06372 PBP1_GC_G_like Ligand- 97.7 8.6E-05 1.9E-09 60.8 6.3 49 75-123 15-65 (391)
15 PF01094 ANF_receptor: Recepto 97.7 0.00011 2.4E-09 57.6 6.2 44 78-121 1-46 (348)
16 cd06368 PBP1_iGluR_non_NMDA_li 97.4 0.00048 1E-08 54.4 6.9 47 78-124 12-61 (324)
17 cd06370 PBP1_Speract_GC_like L 97.4 0.00037 7.9E-09 57.7 6.1 53 73-125 15-69 (404)
18 cd06386 PBP1_NPR_C_like Ligand 97.0 0.0025 5.4E-08 52.6 6.7 45 73-117 13-59 (387)
19 cd06352 PBP1_NPR_GC_like Ligan 96.9 0.0026 5.6E-08 51.7 6.5 50 74-123 14-65 (389)
20 cd06385 PBP1_NPR_A Ligand-bind 96.9 0.0024 5.1E-08 52.7 6.4 49 53-110 2-53 (405)
21 cd06366 PBP1_GABAb_receptor Li 96.7 0.0047 1E-07 49.5 6.3 49 76-124 14-64 (350)
22 cd06373 PBP1_NPR_like Ligand b 96.6 0.0045 9.7E-08 50.8 5.3 42 81-122 22-69 (396)
23 cd06392 PBP1_iGluR_delta_1 N-t 96.3 0.0097 2.1E-07 50.5 6.1 48 79-126 13-63 (400)
24 cd04509 PBP1_ABC_transporter_G 96.0 0.046 1E-06 41.1 7.6 63 53-124 2-65 (299)
25 cd06391 PBP1_iGluR_delta_2 N-t 95.8 0.023 5E-07 47.8 6.1 45 81-126 15-63 (400)
26 cd06371 PBP1_sensory_GC_DEF_li 95.1 0.047 1E-06 45.1 5.3 41 80-120 20-62 (382)
27 cd06380 PBP1_iGluR_AMPA N-term 94.7 0.098 2.1E-06 42.6 6.1 48 79-126 13-63 (382)
28 cd06340 PBP1_ABC_ligand_bindin 94.2 0.16 3.5E-06 40.8 6.4 51 74-124 14-68 (347)
29 cd06384 PBP1_NPR_B Ligand-bind 94.2 0.13 2.7E-06 42.5 5.8 33 76-108 16-51 (399)
30 cd06330 PBP1_Arsenic_SBP_like 94.1 0.3 6.4E-06 38.9 7.6 50 75-124 15-65 (346)
31 cd06379 PBP1_iGluR_NMDA_NR1 N- 93.4 0.44 9.6E-06 38.8 7.7 59 49-124 18-79 (377)
32 cd06342 PBP1_ABC_LIVBP_like Ty 93.1 0.38 8.2E-06 37.8 6.5 50 75-124 15-65 (334)
33 cd06351 PBP1_iGluR_N_LIVBP_lik 92.9 0.27 5.8E-06 38.2 5.5 46 77-122 11-59 (328)
34 cd06345 PBP1_ABC_ligand_bindin 91.9 0.61 1.3E-05 37.2 6.4 50 75-124 15-65 (344)
35 cd06346 PBP1_ABC_ligand_bindin 91.8 0.63 1.4E-05 36.8 6.4 49 76-124 16-65 (312)
36 cd06347 PBP1_ABC_ligand_bindin 91.5 0.7 1.5E-05 36.2 6.3 48 77-124 17-65 (334)
37 cd06394 PBP1_iGluR_Kainate_KA1 91.0 0.93 2E-05 37.4 6.8 49 76-124 13-64 (333)
38 cd06387 PBP1_iGluR_AMPA_GluR3 90.6 0.78 1.7E-05 38.4 6.0 48 79-126 13-64 (372)
39 cd06377 PBP1_iGluR_NMDA_NR3 N- 89.7 1.3 2.9E-05 37.6 6.8 57 47-119 15-73 (382)
40 PF13433 Peripla_BP_5: Peripla 88.9 2 4.3E-05 36.5 7.2 49 74-123 15-65 (363)
41 cd06343 PBP1_ABC_ligand_bindin 88.7 2.4 5.1E-05 34.0 7.3 67 48-123 4-71 (362)
42 cd06349 PBP1_ABC_ligand_bindin 88.3 1.4 3.1E-05 35.0 5.7 50 74-123 14-64 (340)
43 cd06326 PBP1_STKc_like Type I 87.1 4.2 9.2E-05 31.9 7.8 50 74-123 15-65 (336)
44 cd06333 PBP1_ABC-type_HAAT_lik 85.8 4.9 0.00011 31.4 7.4 49 75-123 15-63 (312)
45 cd06329 PBP1_SBP_like_3 Peripl 85.2 3.3 7.1E-05 33.1 6.3 50 76-125 16-66 (342)
46 cd06390 PBP1_iGluR_AMPA_GluR1 85.1 1.9 4.2E-05 35.7 5.1 44 78-126 12-57 (364)
47 cd06268 PBP1_ABC_transporter_L 83.8 4.6 0.0001 30.2 6.2 50 75-124 15-65 (298)
48 cd06381 PBP1_iGluR_delta_like 76.4 8.7 0.00019 31.8 6.1 45 82-126 16-63 (363)
49 cd06344 PBP1_ABC_ligand_bindin 76.4 12 0.00025 29.7 6.6 49 75-123 14-63 (332)
50 cd06331 PBP1_AmiC_like Type I 76.0 18 0.00039 28.6 7.6 49 76-124 16-65 (333)
51 KOG1055|consensus 75.6 4.4 9.6E-05 37.9 4.4 65 48-123 39-109 (865)
52 cd06388 PBP1_iGluR_AMPA_GluR4 73.5 12 0.00026 31.0 6.2 47 80-126 14-64 (371)
53 cd06328 PBP1_SBP_like_2 Peripl 70.3 18 0.00039 28.8 6.4 51 74-124 14-66 (333)
54 cd06383 PBP1_iGluR_AMPA_Like N 66.3 16 0.00035 30.3 5.5 48 76-125 11-65 (368)
55 PRK15404 leucine ABC transport 65.0 50 0.0011 27.0 8.1 67 49-124 24-91 (369)
56 cd06338 PBP1_ABC_ligand_bindin 64.1 29 0.00063 27.3 6.4 49 76-124 16-69 (345)
57 cd06348 PBP1_ABC_ligand_bindin 61.3 34 0.00074 27.0 6.4 49 76-124 16-65 (344)
58 cd06389 PBP1_iGluR_AMPA_GluR2 61.2 23 0.00051 29.1 5.6 43 80-125 14-57 (370)
59 cd08684 C2A_Tac2-N C2 domain f 59.2 33 0.00071 24.2 5.1 54 49-106 21-74 (103)
60 cd06327 PBP1_SBP_like_1 Peripl 59.2 36 0.00078 26.9 6.1 48 76-124 17-64 (334)
61 TIGR03407 urea_ABC_UrtA urea A 55.6 74 0.0016 25.7 7.5 63 51-123 1-65 (359)
62 cd06334 PBP1_ABC_ligand_bindin 54.8 42 0.00092 27.2 6.0 51 74-124 14-65 (351)
63 cd06336 PBP1_ABC_ligand_bindin 53.5 48 0.001 26.5 6.0 49 76-124 16-69 (347)
64 cd00914 PCD_DCoH_subfamily_b P 52.6 17 0.00036 23.7 2.7 34 72-105 15-50 (76)
65 PF13458 Peripla_BP_6: Peripla 52.1 1.1E+02 0.0023 23.9 7.7 64 51-123 2-66 (343)
66 cd06355 PBP1_FmdD_like Peripla 47.6 75 0.0016 25.5 6.3 48 75-123 15-64 (348)
67 TIGR03669 urea_ABC_arch urea A 47.5 1.1E+02 0.0024 25.3 7.4 47 76-123 17-65 (374)
68 cd00488 PCD_DCoH PCD_DCoH: The 39.6 44 0.00095 21.5 3.2 33 72-104 14-48 (75)
69 TIGR03863 PQQ_ABC_bind ABC tra 38.9 1.1E+02 0.0023 25.2 6.0 46 77-124 11-58 (347)
70 cd06335 PBP1_ABC_ligand_bindin 37.7 1.1E+02 0.0025 24.3 5.9 49 76-124 16-65 (347)
71 cd00913 PCD_DCoH_subfamily_a P 36.7 44 0.00095 21.6 2.8 32 72-103 15-48 (76)
72 KOG3297|consensus 35.1 28 0.00061 27.3 1.9 24 85-108 24-52 (202)
73 cd06367 PBP1_iGluR_NMDA N-term 34.3 88 0.0019 25.0 4.8 43 81-123 16-60 (362)
74 PF12407 Abdominal-A: Homeobox 34.1 22 0.00048 18.6 0.8 8 85-92 3-10 (24)
75 COG0683 LivK ABC-type branched 31.1 2.8E+02 0.0062 22.5 7.4 64 50-123 10-75 (366)
76 cd06358 PBP1_NHase Type I peri 31.1 2.3E+02 0.005 22.3 6.6 46 79-124 19-65 (333)
77 cd06356 PBP1_Amide_Urea_BP_lik 29.3 2.3E+02 0.0051 22.4 6.4 49 75-123 15-64 (334)
78 KOG4513|consensus 27.8 78 0.0017 27.9 3.5 38 74-123 137-186 (531)
79 PRK00823 phhB pterin-4-alpha-c 24.2 84 0.0018 21.3 2.6 33 72-104 34-68 (97)
80 cd06357 PBP1_AmiC Periplasmic 21.8 3.7E+02 0.0081 21.5 6.4 48 76-123 16-64 (360)
No 1
>cd06374 PBP1_mGluR_groupI Ligand binding domain of the group I metabotropic glutamate receptor. Ligand binding domain of the group I metabotropic glutamate receptor, a family containing mGlu1R and mGlu5R, all of which stimulate phospholipase C (PLC) hydrolysis. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.
Probab=99.85 E-value=2e-21 Score=163.76 Aligned_cols=81 Identities=40% Similarity=0.705 Sum_probs=72.2
Q ss_pred CcccCCCEEEEEEEEeeccc-----CCccccccCchhHHHHHHHHHHHHHHHhc--ccCCCceEeeEEecCCCChHHHHH
Q psy9174 44 SAEISGDVLLGGLMMIHSRS-----ESSVCGPIMAQGGIQALETMLYTIDRINA--ELTMNLTLGAHVLDDCDQDTHGLE 116 (127)
Q Consensus 44 ~~~~~GDv~IGglFplh~~~-----~~~~C~~~~~~~~~q~~lAmiFAIeEIN~--~LLPNITLGy~I~DsC~~~~~al~ 116 (127)
..+++||++|||+||+|... ...+|.+....+++|+++||+|||||||+ +||||++|||+|+|+|++...|++
T Consensus 3 ~~~~~Gd~~igglfpvh~~~~~~~~~~~~c~~~~~~~g~~~~~Am~~Aie~IN~~~~lLp~~~Lg~~i~Dtc~~~~~a~~ 82 (472)
T cd06374 3 VARMDGDIIIGALFSVHHQPAAEKVPERKCGEIREQYGIQRVEAMFHTLDRINADPVLLPNITLGCEIRDSCWHSSVALE 82 (472)
T ss_pred eEEecCCEEEEEEEecccccccCCCCCCCccccCcchhHHHHHHHHHHHHHHhCCcccCCCceeccEEEEcCCCchHHHH
Confidence 34689999999999999632 35789864456899999999999999999 999999999999999999999999
Q ss_pred HHHHHHhc
Q psy9174 117 MAVDFIKG 124 (127)
Q Consensus 117 ~~l~~lsg 124 (127)
.++.++.+
T Consensus 83 ~~~~~i~~ 90 (472)
T cd06374 83 QSIEFIRD 90 (472)
T ss_pred HHHHHHhh
Confidence 99999874
No 2
>cd06364 PBP1_CaSR Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. CaSR provides feedback control of extracellular calcium homeostasis by responding sensitively to acute fluctuations in extracellular ionized Ca2+ concentration. This ligand-binding domain has homology to the bacterial leucine-isoleucine-valine binding protein (LIVBP) and a leucine binding protein (LBP). CaSR is widely expressed in mammalian tissues and is active in tissues that are not directly involved in extracellular calcium homeostasis. Moreover, CaSR responds to aromatic, aliphatic, and polar amino acids, but not to positively charged or branched chain amino acids, which suggests that changes in plasma amino acid levels are likely to modulate whole body calci
Probab=99.81 E-value=6.7e-20 Score=157.13 Aligned_cols=81 Identities=35% Similarity=0.612 Sum_probs=73.3
Q ss_pred CCcccCCCEEEEEEEEeecc-----------cCCccccccCchhHHHHHHHHHHHHHHHhc--ccCCCceEeeEEecCCC
Q psy9174 43 YSAEISGDVLLGGLMMIHSR-----------SESSVCGPIMAQGGIQALETMLYTIDRINA--ELTMNLTLGAHVLDDCD 109 (127)
Q Consensus 43 ~~~~~~GDv~IGglFplh~~-----------~~~~~C~~~~~~~~~q~~lAmiFAIeEIN~--~LLPNITLGy~I~DsC~ 109 (127)
..++++||++|||+||+|.. +...+|.+ ++.+++|+++||.|||||||+ .||||+||||+|+|+|+
T Consensus 5 ~~~~~~Gd~~igglFpvh~~~~~~~~~~~~~~~~~~c~~-~~~~g~~~~~am~~AieeIN~~~~lLp~i~Lg~~i~Dtc~ 83 (510)
T cd06364 5 QRAQKKGDIILGGLFPIHFGVAAKDQDLKSRPESVECIR-YNFRGFRWLQAMIFAIEEINNSPTLLPNITLGYRIFDTCN 83 (510)
T ss_pred cceeecCCEEEEEEEECcccccccccccccCCCCCcccc-cChhhHHHHHHHHHHHHHHhCCCccCCCCEEeEEEEccCC
Confidence 45789999999999999963 33468987 588999999999999999999 99999999999999999
Q ss_pred ChHHHHHHHHHHHhc
Q psy9174 110 QDTHGLEMAVDFIKG 124 (127)
Q Consensus 110 ~~~~al~~~l~~lsg 124 (127)
++..|++.+..++++
T Consensus 84 ~~~~a~~~a~~li~~ 98 (510)
T cd06364 84 TVSKALEATLSFVAQ 98 (510)
T ss_pred chHHHHHHHHHHHhc
Confidence 999999999999875
No 3
>cd06375 PBP1_mGluR_groupII Ligand binding domain of the group II metabotropic glutamate receptor. Ligand binding domain of the group II metabotropic glutamate receptor, a family that contains mGlu2R and mGlu3R, all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes
Probab=99.81 E-value=5.3e-20 Score=155.49 Aligned_cols=76 Identities=45% Similarity=0.879 Sum_probs=68.9
Q ss_pred CCEEEEEEEEeecccCC-ccccccCchhHHHHHHHHHHHHHHHhc--ccCCCceEeeEEecCCCChHHHHHHHHHHHhc
Q psy9174 49 GDVLLGGLMMIHSRSES-SVCGPIMAQGGIQALETMLYTIDRINA--ELTMNLTLGAHVLDDCDQDTHGLEMAVDFIKG 124 (127)
Q Consensus 49 GDv~IGglFplh~~~~~-~~C~~~~~~~~~q~~lAmiFAIeEIN~--~LLPNITLGy~I~DsC~~~~~al~~~l~~lsg 124 (127)
||++|||+||+|..... .+|.++..++++++++||+|||||||+ .||||+||||+|+|+|+++..|++.++.++++
T Consensus 1 Gd~~igglFp~h~~~~~~~~C~~~~~~~g~~~~~Am~~AIe~IN~~~~lLp~~~Lg~~i~Dtc~~~~~a~~~~~~~i~~ 79 (458)
T cd06375 1 GDLVLGGLFPVHEKGEGTEECGRINEDRGIQRLEAMLFAIDRINNDPRILPGIKLGVHILDTCSRDTYALEQSLEFVRA 79 (458)
T ss_pred CCEEEEEEEEeeeCCCCCCCCcCccccchHHHHHHHHHHHHHHhCCCCCCCCceeccEEEecCCCcHHHHHHHHHHHhh
Confidence 89999999999987543 689874336899999999999999999 89999999999999999999999999999864
No 4
>cd06365 PBP1_Pheromone_receptor Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily. Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptor, the GABAb receptor, the calcium-sensing receptor (CaSR), the T1R taste receptor, and a small group of uncharacterized orphan receptors.
Probab=99.80 E-value=9.9e-20 Score=154.11 Aligned_cols=75 Identities=25% Similarity=0.463 Sum_probs=67.9
Q ss_pred CCEEEEEEEEeecccC-----------CccccccCchhHHHHHHHHHHHHHHHhc--ccCCCceEeeEEecCCCChHHHH
Q psy9174 49 GDVLLGGLMMIHSRSE-----------SSVCGPIMAQGGIQALETMLYTIDRINA--ELTMNLTLGAHVLDDCDQDTHGL 115 (127)
Q Consensus 49 GDv~IGglFplh~~~~-----------~~~C~~~~~~~~~q~~lAmiFAIeEIN~--~LLPNITLGy~I~DsC~~~~~al 115 (127)
||++|||+||+|.... ...|.. +..+++|+++||.|||||||+ +||||+||||+|+|+|+++..|+
T Consensus 1 Gdi~igglf~vh~~~~~~~~~~~~~~~~~~c~~-~~~~~~~~~~Am~~Ai~~IN~~~~lLp~~~Lg~~i~dtc~~~~~a~ 79 (469)
T cd06365 1 GDLVIGGFFPLYTLSGPFETDDWHPFSADLDFR-LLLKNYQHVLALLFAIEEINKNPHLLPNISLGFHIYNVLHSDRKAL 79 (469)
T ss_pred CCeeEeceEEEEEeccccccccccCcccccccc-ccchhhHHHHHHHHHHHHHhCCCCCCCCceEEEEEECCCCccHHHH
Confidence 8999999999996542 245655 588999999999999999999 89999999999999999999999
Q ss_pred HHHHHHHhc
Q psy9174 116 EMAVDFIKG 124 (127)
Q Consensus 116 ~~~l~~lsg 124 (127)
+.+++++++
T Consensus 80 ~~~~~~~~~ 88 (469)
T cd06365 80 ESSLMWLSG 88 (469)
T ss_pred HHHHHHHhC
Confidence 999999975
No 5
>KOG1056|consensus
Probab=99.79 E-value=2.6e-19 Score=161.64 Aligned_cols=83 Identities=41% Similarity=0.787 Sum_probs=74.4
Q ss_pred CCcccCCCEEEEEEEEeecccC-CccccccCchhHHHHHHHHHHHHHHHhc-ccCCCceEeeEEecCCCChHHHHHHHHH
Q psy9174 43 YSAEISGDVLLGGLMMIHSRSE-SSVCGPIMAQGGIQALETMLYTIDRINA-ELTMNLTLGAHVLDDCDQDTHGLEMAVD 120 (127)
Q Consensus 43 ~~~~~~GDv~IGglFplh~~~~-~~~C~~~~~~~~~q~~lAmiFAIeEIN~-~LLPNITLGy~I~DsC~~~~~al~~~l~ 120 (127)
.....+||+++||+||+|.+.. ...|++...++++|+++||+|||||||+ +||||+|||++|+|+|..++.|+++++.
T Consensus 24 ~~~~~~gdi~lgglFpvh~k~~~~~~cg~~~~~~gi~r~eAml~al~~iN~~~lLp~~kLG~~i~DTCs~~t~aleqsl~ 103 (878)
T KOG1056|consen 24 VVARIPGDIILGGLFPVHEKGGGAPQCGRIREPRGIQRLEAMLFALDEINNPDLLPNIKLGARILDTCSRSTYALEQSLS 103 (878)
T ss_pred eeccCCCCeEEcceeeecccCCCCCcccccccchhHHHHHHHHHHHHHhcCcccCCCceeeeeEeeccCCcHHHHHhhHH
Confidence 4567899999999999997754 3449876669999999999999999999 9999999999999999999999999999
Q ss_pred HHhcc
Q psy9174 121 FIKGR 125 (127)
Q Consensus 121 ~lsg~ 125 (127)
|++..
T Consensus 104 Fv~~~ 108 (878)
T KOG1056|consen 104 FVRAS 108 (878)
T ss_pred HHHhc
Confidence 98753
No 6
>cd06361 PBP1_GPC6A_like Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor. This family includes the ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor, and its fish homolog, the 5.24 chemoreceptor. GPRC6A is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses.
Probab=99.66 E-value=2.5e-16 Score=131.29 Aligned_cols=72 Identities=26% Similarity=0.511 Sum_probs=65.6
Q ss_pred EEEEEEEeecc----------cCCccccccCchhHHHHHHHHHHHHHHHhc-ccCCCceEeeEEecCCCChHHHHHHHHH
Q psy9174 52 LLGGLMMIHSR----------SESSVCGPIMAQGGIQALETMLYTIDRINA-ELTMNLTLGAHVLDDCDQDTHGLEMAVD 120 (127)
Q Consensus 52 ~IGglFplh~~----------~~~~~C~~~~~~~~~q~~lAmiFAIeEIN~-~LLPNITLGy~I~DsC~~~~~al~~~l~ 120 (127)
+|||+||+|.. +....|.+ ++.++||+++||.|||||||+ .+|||++|||.|+|+|+++..|++.+..
T Consensus 1 ~lgglf~vh~~~~~~~~~~~~~~~~~c~~-~~~~g~~~~~am~~AieeIN~~~~Lpg~~L~~~i~Dt~~~~~~a~~~a~~ 79 (403)
T cd06361 1 IIGGLFAIHEAMLSVEDTPSRPQIQECVG-FEIKGFLQTLAMIHAIEMINNSTLLLGVTLGYEIYDTCSEVTTAMAAVLR 79 (403)
T ss_pred CEEEEEECcccccccccccCCCCCCcccc-cChhHHHHHHHHHHHHHHHhCCCCCCCCEEceEEEeCCCChHHHHHHHHH
Confidence 58999999975 33568987 588999999999999999999 9999999999999999999999999999
Q ss_pred HHhc
Q psy9174 121 FIKG 124 (127)
Q Consensus 121 ~lsg 124 (127)
++++
T Consensus 80 li~~ 83 (403)
T cd06361 80 FLSK 83 (403)
T ss_pred HHhh
Confidence 9864
No 7
>cd06376 PBP1_mGluR_groupIII Ligand-binding domain of the group III metabotropic glutamate receptor. Ligand-binding domain of the group III metabotropic glutamate receptor, a family which contains mGlu4R, mGluR6R, mGluR7, and mGluR8; all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.
Probab=99.61 E-value=2.5e-15 Score=126.39 Aligned_cols=76 Identities=46% Similarity=0.873 Sum_probs=66.4
Q ss_pred CCEEEEEEEEeecc-cCCccccccCchhHHHHHHHHHHHHHHHhc--ccCCCceEeeEEecCCCChHHHHHHHHHHHhc
Q psy9174 49 GDVLLGGLMMIHSR-SESSVCGPIMAQGGIQALETMLYTIDRINA--ELTMNLTLGAHVLDDCDQDTHGLEMAVDFIKG 124 (127)
Q Consensus 49 GDv~IGglFplh~~-~~~~~C~~~~~~~~~q~~lAmiFAIeEIN~--~LLPNITLGy~I~DsC~~~~~al~~~l~~lsg 124 (127)
||++|||+||+|.. +....|.++....++++++||.|||||||+ .+|||++|||.|+|+|.++..++++++.++++
T Consensus 1 Gdi~igglfp~h~~~~~~~~c~~~~~~~g~~~~~a~~~Aie~IN~~~~iLpg~~L~~~i~D~~~~~~~~~~~a~~~~~~ 79 (463)
T cd06376 1 GDITLGGLFPVHARGPAGVPCGDIKKENGIHRLEAMLYALDQINSDPDLLPNVTLGARILDTCSRDTYALEQSLTFVQA 79 (463)
T ss_pred CCeEEEEEEeeeeCCCCCCCccccccchhHHHHHHHHHHHHHhhCCCCCCCCceEccEEEeccCCcHHHHHHHHHHHhh
Confidence 89999999999964 334678764225999999999999999999 89999999999999999999999999887654
No 8
>cd06362 PBP1_mGluR Ligand binding domain of the metabotropic glutamate receptors (mGluR). Ligand binding domain of the metabotropic glutamate receptors (mGluR), which are members of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses. mGluRs bind to glutamate and function as an excitatory neurotransmitter; they are involved in learning, memory, anxiety, and the perception of pain. Eight subtypes of mGluRs have been cloned so far, and are classified into three groups according to their sequence similarities, transduction mechanisms, and pharmacological profiles. Group I is composed of mGlu1R and mGlu5R that both stimulate PLC hydrolysis. Group II includes mGlu2R and mGlu3R, which inhibit adenylyl cyclase, as do mGlu4R, mGlu6R, mGlu7R, and mGlu8R, which form group III.
Probab=99.58 E-value=5.9e-15 Score=122.93 Aligned_cols=76 Identities=47% Similarity=0.892 Sum_probs=67.0
Q ss_pred CCEEEEEEEEeeccc-CCccccccCchhHHHHHHHHHHHHHHHhc--ccCCCceEeeEEecCCCChHHHHHHHHHHHhc
Q psy9174 49 GDVLLGGLMMIHSRS-ESSVCGPIMAQGGIQALETMLYTIDRINA--ELTMNLTLGAHVLDDCDQDTHGLEMAVDFIKG 124 (127)
Q Consensus 49 GDv~IGglFplh~~~-~~~~C~~~~~~~~~q~~lAmiFAIeEIN~--~LLPNITLGy~I~DsC~~~~~al~~~l~~lsg 124 (127)
||++|||+||+|... ....|.++....+++..+||.+||||||+ .+|||++||+.++|+|.++..|++.+..+++.
T Consensus 1 Gd~~igglfp~h~~~~~~~~c~~~~~~~G~~~~~a~~~Aie~IN~~~~iLpg~~L~~~i~D~~~~~~~a~~~a~~li~~ 79 (452)
T cd06362 1 GDIILGGLFPVHSKGTGGEPCGEIKEQRGIQRLEAMLFALDEINNDPTLLPGITLGAHILDTCSRDTYALEQSLEFVRA 79 (452)
T ss_pred CCeEEEEEEecccCCCCCCCCcCccccchHHHHHHHHHHHHHhhCCCCCCCCCeeCcEEEEeCCCchHHHHHHHHHHhh
Confidence 899999999999643 35679764236899999999999999999 89999999999999999999999999988753
No 9
>cd06363 PBP1_Taste_receptor Ligand-binding domain of the T1R taste receptor. Ligand-binding domain of the T1R taste receptor. The T1R is a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptors, GABAb receptors, the calcium-sensing receptor (CaSR), the V2R pheromone receptors, and a small group of uncharacterized orphan receptors.
Probab=99.41 E-value=1.1e-12 Score=108.50 Aligned_cols=77 Identities=25% Similarity=0.519 Sum_probs=67.4
Q ss_pred cccCCCEEEEEEEEeecccC----------CccccccCchhHHHHHHHHHHHHHHHhc--ccCCCceEeeEEecCCCChH
Q psy9174 45 AEISGDVLLGGLMMIHSRSE----------SSVCGPIMAQGGIQALETMLYTIDRINA--ELTMNLTLGAHVLDDCDQDT 112 (127)
Q Consensus 45 ~~~~GDv~IGglFplh~~~~----------~~~C~~~~~~~~~q~~lAmiFAIeEIN~--~LLPNITLGy~I~DsC~~~~ 112 (127)
+++|||++|||+||+|.... ...|+. ....+.+...|+.+|+||||+ .+|||.++++.++|+|. +.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~g~~~~~a~~lAv~~IN~~ggil~g~~l~~~~~D~~~-~~ 78 (410)
T cd06363 1 FRLPGDYLLGGLFPLHYATSALPHRRPEPLDCSSYR-FNLSGYRLFQAMRFAVEEINNSTSLLPGVTLGYEIFDHCS-DS 78 (410)
T ss_pred CCCCCCEEEEEEeECcccccccccCCCCCccCccCc-cCHHHHHHHHHHHHHHHHHhCCCccCCCCeeceEEEecCC-cH
Confidence 46899999999999998543 356877 478899999999999999999 89999999999999999 66
Q ss_pred HHHHHHHHHHh
Q psy9174 113 HGLEMAVDFIK 123 (127)
Q Consensus 113 ~al~~~l~~ls 123 (127)
.|++.+..+++
T Consensus 79 ~a~~~~~~li~ 89 (410)
T cd06363 79 ANFPPTLSLLS 89 (410)
T ss_pred HHHHHHHHHHh
Confidence 69999988875
No 10
>cd06350 PBP1_GPCR_family_C_like Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). The metabotropic glutamate receptors (mGluR) are key receptors in the modulation of excitatory synaptic transmission in the central nervous system. The mGluRs are coupled to G proteins and are thus distinct from the iGluRs which internally contain ligand-gated ion channels. The mGluR structure is divided into three regions: the extracellular region, the seven-spanning transmembrane region and the cytoplasmic region. The extr
Probab=99.01 E-value=1.3e-09 Score=86.79 Aligned_cols=72 Identities=40% Similarity=0.734 Sum_probs=63.9
Q ss_pred EEEEEEEeecccC--CccccccCchhHHHHHHHHHHHHHHHhc--ccCCCceEeeEEecCCCChHHHHHHHHHHHhc
Q psy9174 52 LLGGLMMIHSRSE--SSVCGPIMAQGGIQALETMLYTIDRINA--ELTMNLTLGAHVLDDCDQDTHGLEMAVDFIKG 124 (127)
Q Consensus 52 ~IGglFplh~~~~--~~~C~~~~~~~~~q~~lAmiFAIeEIN~--~LLPNITLGy~I~DsC~~~~~al~~~l~~lsg 124 (127)
+|||+||+|.... ...|.. ....+.+..++|.+||||||+ .+|||.+|++.++|+|+++..|.+.+.+++..
T Consensus 1 ~ig~lf~~~~~~~~~~~~c~~-~~~~~~~~~~~~~~Av~~iN~~~~~l~g~~l~l~~~D~~~~~~~a~~~a~~li~~ 76 (348)
T cd06350 1 IIGGLFPLHSGSESVSLKCGR-FGKKGLQAAEAMLFAVEEINNDPDLLPNITLGYHIYDSCCSPAVALRAALDLLLS 76 (348)
T ss_pred CeEEEEeCcccccCCCcccce-echHHHHHHHHHHHHHHHHcCCCccCCCCceeEEEEecCCcchHHHHHHHHHHhc
Confidence 4899999998654 356876 478899999999999999999 79999999999999999999999999998864
No 11
>cd06393 PBP1_iGluR_Kainate_GluR5_7 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels activated
Probab=98.12 E-value=6.5e-06 Score=67.67 Aligned_cols=64 Identities=19% Similarity=0.213 Sum_probs=46.5
Q ss_pred EEEEEEEEeecccCCccccccCchhHHHHHHHHHHHHHHHhc--ccCCCceEeeEEecCCCChH-HHHHHHHHHH
Q psy9174 51 VLLGGLMMIHSRSESSVCGPIMAQGGIQALETMLYTIDRINA--ELTMNLTLGAHVLDDCDQDT-HGLEMAVDFI 122 (127)
Q Consensus 51 v~IGglFplh~~~~~~~C~~~~~~~~~q~~lAmiFAIeEIN~--~LLPNITLGy~I~DsC~~~~-~al~~~l~~l 122 (127)
+.|||+|+.++......+. ..-.||.+||||||+ .+||+.+|+|++.+.+.... .+.+.+.+.+
T Consensus 3 i~IG~i~~~~tg~~~~~g~--------~~~~a~~~Av~~IN~~~~il~~~~l~~~~~~~~~~d~~~~~~~~~~~l 69 (384)
T cd06393 3 IRIGGIFEYLDGPNNQVMS--------AEELAFRFSANIINRNRTLLPNTTLTYDIQRIHFHDSFEATKKACDQL 69 (384)
T ss_pred eeEEEeecCCcccccccCc--------HHHHHHHHHHHHhcCCCccCCCceEEEEEEecccccchhHHHHhhccc
Confidence 6899999976544322221 234899999999998 99999999999999776444 4555554443
No 12
>cd06269 PBP1_glutamate_receptors_like Family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors. This CD represents the ligand-binding domain of the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors, all of which are structurally similar and related to the periplasmic-binding fold type I family. The family C GPCRs consist of metabotropic glutamate receptor (mGluR) receptors, a calcium-sensing receptor (CaSR), gamma-aminobutyric receptors (GABAb), the promiscuous L-alpha-amino acid receptor GPR6A, families of taste and pheromone receptors, and orphan receptors. Truncated splicing va
Probab=97.96 E-value=4.9e-05 Score=57.61 Aligned_cols=65 Identities=26% Similarity=0.463 Sum_probs=56.4
Q ss_pred EEEEEEEeecccCCccccccCchhHHHHHHHHHHHHHHHhcccCCCceEeeEEecCCCChHHHHHHHHHHHhc
Q psy9174 52 LLGGLMMIHSRSESSVCGPIMAQGGIQALETMLYTIDRINAELTMNLTLGAHVLDDCDQDTHGLEMAVDFIKG 124 (127)
Q Consensus 52 ~IGglFplh~~~~~~~C~~~~~~~~~q~~lAmiFAIeEIN~~LLPNITLGy~I~DsC~~~~~al~~~l~~lsg 124 (127)
.|||+|+.|.. +. ....++....++.+|++++|+. +|+.+|++.++|+|++...+...+..++..
T Consensus 1 ~iG~~f~~~~~-----~~--~~~~~~~~~~~~~~~~~~~n~~-~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~ 65 (298)
T cd06269 1 RIGGLFPLHSG-----GR--FGEEGAFRAAAALFAVEEINND-LPNTTLGYEIYDSCCSPSDAFSAALDLCSL 65 (298)
T ss_pred CEEEEeecccc-----cc--cCHHHHHHHHHHHHHHHHHhcc-CCCCeeeeEEEecCCChHHHHHHHHHHHhc
Confidence 38999998864 11 3567899999999999999998 999999999999999999999999888864
No 13
>cd06382 PBP1_iGluR_Kainate N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors, non-NMDA ionotropic receptors which respond to the neurotransmitter glutamate. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Kainate receptors have five subunits, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeri
Probab=97.85 E-value=4.6e-05 Score=60.66 Aligned_cols=58 Identities=24% Similarity=0.278 Sum_probs=47.2
Q ss_pred EEEEEEeecccCCccccccCchhHHHHHHHHHHHHHHHhc--ccCCCceEeeEEecCC-CChHHHHHHHHHHHhc
Q psy9174 53 LGGLMMIHSRSESSVCGPIMAQGGIQALETMLYTIDRINA--ELTMNLTLGAHVLDDC-DQDTHGLEMAVDFIKG 124 (127)
Q Consensus 53 IGglFplh~~~~~~~C~~~~~~~~~q~~lAmiFAIeEIN~--~LLPNITLGy~I~DsC-~~~~~al~~~l~~lsg 124 (127)
||++|++ ..+-+...|+.+||||||+ .+||+.+|.+.+.|+| +++..+.+.+-.+++.
T Consensus 2 iG~i~~~--------------~~g~~~~~a~~lAv~~iN~~ggil~g~~l~~~~~d~~~~~~~~a~~~~~~li~~ 62 (327)
T cd06382 2 IGAIFDD--------------DDDSGEELAFRYAIDRINREKELLANTTLEYDIKRVKPDDSFETTKKVCDLLQQ 62 (327)
T ss_pred eEEEecC--------------CCchHHHHHHHHHHHHhcccccccCCceEEEEEEEecCCCcHHHHHHhhhhhhc
Confidence 7888865 2345667899999999999 8899999999999999 7787787777666643
No 14
>cd06372 PBP1_GC_G_like Ligand-binding domain of membrane guanylyl cyclase G. This group includes the ligand-binding domain of membrane guanylyl cyclase G (GC-G) which is a sperm surface receptor and might function, similar to its sea urchin counterpart, in the early signaling event that regulates the Ca2+ influx/efflux and subsequent motility response in sperm. GC-G appears to be a pseudogene in human. Furthermore, in contrast to the other orphan receptor GCs, GC-G has a broad tissue distribution in rat, including lung, intestine, kidney, and skeletal muscle.
Probab=97.72 E-value=8.6e-05 Score=60.80 Aligned_cols=49 Identities=10% Similarity=0.124 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHHHHHHhc--ccCCCceEeeEEecCCCChHHHHHHHHHHHh
Q psy9174 75 GGIQALETMLYTIDRINA--ELTMNLTLGAHVLDDCDQDTHGLEMAVDFIK 123 (127)
Q Consensus 75 ~~~q~~lAmiFAIeEIN~--~LLPNITLGy~I~DsC~~~~~al~~~l~~ls 123 (127)
.+.+...||.+|||+||+ .+|||.+|++.++|+++++..|...+..++.
T Consensus 15 ~~~~~~~a~~lAi~~IN~~~~~l~~~~l~~~~~D~~~~~~~a~~~~~~l~~ 65 (391)
T cd06372 15 SAQRLGAALQIAMDKVNSDPVYLGNYSMEFTYTNSTCSAKESLAGFIDQVQ 65 (391)
T ss_pred hhhhHHHHHHHHHHHHhcCCCCCCCceEEEEEecCCCCccHHHHHHHHHHH
Confidence 334444899999999999 7999999999999998888889999988875
No 15
>PF01094 ANF_receptor: Receptor family ligand binding region The Prosite family is a sub-family of the Pfam family; InterPro: IPR001828 This describes a ligand binding domain and includes extracellular ligand binding domains of a wide range of receptors, as well as the bacterial amino acid binding proteins of known structure [].; PDB: 3SAJ_D 3Q41_B 3QEM_C 3QEK_A 3QEL_C 3MQ4_A 3QLV_G 3OM1_A 3QLU_A 3OM0_A ....
Probab=97.68 E-value=0.00011 Score=57.55 Aligned_cols=44 Identities=34% Similarity=0.562 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHhc--ccCCCceEeeEEecCCCChHHHHHHHHHH
Q psy9174 78 QALETMLYTIDRINA--ELTMNLTLGAHVLDDCDQDTHGLEMAVDF 121 (127)
Q Consensus 78 q~~lAmiFAIeEIN~--~LLPNITLGy~I~DsC~~~~~al~~~l~~ 121 (127)
|+..|+.+|||+||+ .++||++|++++.|+|.....+.......
T Consensus 1 ~~~~a~~~Ai~~iN~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~ 46 (348)
T PF01094_consen 1 RVLAAVQLAIDEINNNPDLLPNITLEVQVFDTCSDDSFALQAAICS 46 (348)
T ss_dssp HHHHHHHHHHHHHHHSSTSSTTSEEEEEEEEETTTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCCCCeEEEEEEEeeccCCcccccchhhh
Confidence 578899999999999 88999999999999996666666666543
No 16
>cd06368 PBP1_iGluR_non_NMDA_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors, characterized by their response to glutamate agonists: N-methyl-d -aspartate (NMDA) and non-NMDA receptors. NMDA receptors
Probab=97.45 E-value=0.00048 Score=54.40 Aligned_cols=47 Identities=23% Similarity=0.273 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHhc--ccCCCceEeeEEecCC-CChHHHHHHHHHHHhc
Q psy9174 78 QALETMLYTIDRINA--ELTMNLTLGAHVLDDC-DQDTHGLEMAVDFIKG 124 (127)
Q Consensus 78 q~~lAmiFAIeEIN~--~LLPNITLGy~I~DsC-~~~~~al~~~l~~lsg 124 (127)
+...|+.+||||||+ .+||+++|++.+.|+| .++..+.+.+-++++.
T Consensus 12 ~~~~a~~lAv~~iN~~ggil~~~~l~~~~~d~~~~~~~~a~~~a~~li~~ 61 (324)
T cd06368 12 QEELAFRFAIDRINTNEEILAKFTLVPDIDELNTNDSFELTNKACDLLSQ 61 (324)
T ss_pred HHHHHHHHHHHHhcccccccCCceeeeEEEEecCCChHHHHHHHHHHHhc
Confidence 445789999999999 8999999999999986 7777788777776653
No 17
>cd06370 PBP1_Speract_GC_like Ligand-binding domain of membrane bound guanylyl cyclases. Ligand-binding domain of membrane bound guanylyl cyclases (GCs), which are known to be activated by sperm-activating peptides (SAPs), such as speract or resact. These ligand peptides are released by a range of invertebrates to stimulate the metabolism and motility of spermatozoa and are also potent chemoattractants. These GCs contain a single transmembrane segment, an extracellular ligand binding domain, and intracellular protein kinase-like and cyclase catalytic domains. GCs of insect and nematodes, which exhibit high sequence similarity to the speract receptor are also included in this model.
Probab=97.41 E-value=0.00037 Score=57.72 Aligned_cols=53 Identities=15% Similarity=0.233 Sum_probs=46.8
Q ss_pred chhHHHHHHHHHHHHHHHhc--ccCCCceEeeEEecCCCChHHHHHHHHHHHhcc
Q psy9174 73 AQGGIQALETMLYTIDRINA--ELTMNLTLGAHVLDDCDQDTHGLEMAVDFIKGR 125 (127)
Q Consensus 73 ~~~~~q~~lAmiFAIeEIN~--~LLPNITLGy~I~DsC~~~~~al~~~l~~lsg~ 125 (127)
...+.+...|+.+||||||+ .+|||.+|.+.++|+++++..|...+.+++...
T Consensus 15 a~~G~~~~~a~~lAv~~IN~~ggil~g~~l~l~~~D~~~~~~~a~~~~~~li~~~ 69 (404)
T cd06370 15 DRLGLPISGALTLAVEDVNADPNLLPGYKLQFEWVDTHGDEVLSIRAVSDWWKRG 69 (404)
T ss_pred ccccccHHHHHHHHHHHHhCCCCCCCCCEEEEEEEecCCChHHHHHHHHHHHhcC
Confidence 34577788999999999999 788999999999999999999999998887653
No 18
>cd06386 PBP1_NPR_C_like Ligand-binding domain of type C natriuretic peptide receptor. Ligand-binding domain of type C natriuretic peptide receptor (NPR-C). NPR-C is found in atrial, mesentery, placenta, lung, kidney, venous tissue, aortic smooth muscle, and aortic endothelial cells. The affinity of NPR-C for natriuretic peptides is ANPCNPBNP. The extracellular domain of NPR-C is about 30% identical to NPR-A and NPR-B. However, unlike the cyclase-linked receptors, it contains only 37 intracellular amino acids and no guanylyl cyclase activity. Major function of NPR-C is to clear natriuretic peptides from the circulation or extracellular surroundings through constitutive receptor-mediated internalization and degradation.
Probab=96.97 E-value=0.0025 Score=52.64 Aligned_cols=45 Identities=13% Similarity=0.124 Sum_probs=36.8
Q ss_pred chhHHHHHHHHHHHHHHHhc--ccCCCceEeeEEecCCCChHHHHHH
Q psy9174 73 AQGGIQALETMLYTIDRINA--ELTMNLTLGAHVLDDCDQDTHGLEM 117 (127)
Q Consensus 73 ~~~~~q~~lAmiFAIeEIN~--~LLPNITLGy~I~DsC~~~~~al~~ 117 (127)
.....+...|+-+|+||||+ .+|||.+|.+.++|+++++..+...
T Consensus 13 ~~~~~~~~~a~~lAie~IN~~~~ll~g~~l~~~~~d~~~~~~~~~~~ 59 (387)
T cd06386 13 LFSSARVAPAIEYAQRRLEANRLLFPGFRFNVHYEDSDCGNEALFSL 59 (387)
T ss_pred ceehhhhHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCcCCchHHHHH
Confidence 44557777899999999999 7889999999999998877544443
No 19
>cd06352 PBP1_NPR_GC_like Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The l
Probab=96.95 E-value=0.0026 Score=51.67 Aligned_cols=50 Identities=20% Similarity=0.152 Sum_probs=43.9
Q ss_pred hhHHHHHHHHHHHHHHHhc--ccCCCceEeeEEecCCCChHHHHHHHHHHHh
Q psy9174 74 QGGIQALETMLYTIDRINA--ELTMNLTLGAHVLDDCDQDTHGLEMAVDFIK 123 (127)
Q Consensus 74 ~~~~q~~lAmiFAIeEIN~--~LLPNITLGy~I~DsC~~~~~al~~~l~~ls 123 (127)
..+-....|+.+||||||+ .+++|.+|.+.++|+++++..+.+.+..++.
T Consensus 14 ~~g~~~~~a~~lAve~iN~~g~~i~g~~l~~~~~D~~~~~~~a~~~a~~l~~ 65 (389)
T cd06352 14 FSLARVGPAIQLAVERVNADPNLLPGYDFTFVYLDTECSESVALLAAVDLYW 65 (389)
T ss_pred chhhcchHHHHHHHHHHhcCCCCCCCceEEEEEecCCCchhhhHHHHHHHHh
Confidence 3455666789999999999 4899999999999999999999999988875
No 20
>cd06385 PBP1_NPR_A Ligand-binding domain of type A natriuretic peptide receptor. Ligand-binding domain of type A natriuretic peptide receptor (NPR-A). NPR-A is one of three known single membrane-spanning natriuretic peptide receptors that regulate blood volume, blood pressure, ventricular hypertrophy, pulmonary hypertension, fat metabolism, and long bone growth. In mammals there are three natriuretic peptides: ANP, BNP, and CNP. NPR-A is highly expressed in kidney, adrenal, terminal ileum, adipose, aortic, and lung tissues. The rank order of NPR-A activation by natriuretic peptides is ANPBNPCNP. Single allele-inactivating mutations in the promoter of human NPR-A are associated with hypertension and heart failure.
Probab=96.95 E-value=0.0024 Score=52.66 Aligned_cols=49 Identities=20% Similarity=0.204 Sum_probs=37.6
Q ss_pred EEEEEEeecccCCccccccCchhHHHHH-HHHHHHHHHHhc--ccCCCceEeeEEecCCCC
Q psy9174 53 LGGLMMIHSRSESSVCGPIMAQGGIQAL-ETMLYTIDRINA--ELTMNLTLGAHVLDDCDQ 110 (127)
Q Consensus 53 IGglFplh~~~~~~~C~~~~~~~~~q~~-lAmiFAIeEIN~--~LLPNITLGy~I~DsC~~ 110 (127)
||+++|++... ..-+++.+ .|+.+||||||+ .+|||.+|.+.++|++.+
T Consensus 2 ~g~l~~~~~~~---------~~~~~~~~~~a~~lAve~IN~~~gil~g~~l~~~~~D~~~~ 53 (405)
T cd06385 2 LAVILPLTNTS---------YPWAWPRVGPALERAIDRVNADPDLLPGLHLQYVLGSSENK 53 (405)
T ss_pred eeEECCCCCCc---------CccchhhhHHHHHHHHHHHhcCCCCCCCceEEEEEcccccc
Confidence 78999876431 12234555 499999999999 899999999999997543
No 21
>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.
Probab=96.73 E-value=0.0047 Score=49.46 Aligned_cols=49 Identities=22% Similarity=0.321 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHhc-c-cCCCceEeeEEecCCCChHHHHHHHHHHHhc
Q psy9174 76 GIQALETMLYTIDRINA-E-LTMNLTLGAHVLDDCDQDTHGLEMAVDFIKG 124 (127)
Q Consensus 76 ~~q~~lAmiFAIeEIN~-~-LLPNITLGy~I~DsC~~~~~al~~~l~~lsg 124 (127)
+.....++.+||||||+ - +++|.++.+.++|+++++..|.+.+-.++..
T Consensus 14 G~~~~~~~~lAv~~iN~~gg~~~g~~i~~~~~D~~~~~~~a~~~a~~l~~~ 64 (350)
T cd06366 14 GKAALPAIEMALEDVNADNSILPGYRLVLHVRDSKCDPVQAASAALDLLEN 64 (350)
T ss_pred cHHHHHHHHHHHHHHhcCCCcCCCcEEEEEecCCCCCHHHHHHHHHHHhcc
Confidence 56677899999999999 4 8999999999999999999999999988864
No 22
>cd06373 PBP1_NPR_like Ligand binding domain of natriuretic peptide receptor (NPR) family. Ligand binding domain of natriuretic peptide receptor (NPR) family which consists of three different subtypes: type A natriuretic peptide receptor (NPR-A, or GC-A), type B natriuretic peptide receptors (NPR-B, or GC-B), and type C natriuretic peptide receptor (NPR-C). There are three types of natriuretic peptide (NP) ligands specific to the receptors: atrial NP (ANP), brain or B-type NP (BNP), and C-type NP (CNP). The NP family is thought to have arisen through gene duplication during evolution and plays an essential role in cardiovascular and body fluid homeostasis. ANP and BNP bind mainly to NPR-A, while CNP binds specifically to NPR-B. Both NPR-A and NPR-B have guanylyl cyclase catalytic activity and produces intracellular secondary messenger cGMP in response to peptide-ligand binding. Consequently, the NPR-A activation results in vasodilation and inhibition of vascular smooth muscle cell proli
Probab=96.57 E-value=0.0045 Score=50.79 Aligned_cols=42 Identities=19% Similarity=0.202 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhc--ccCCCceEeeEEecCCC----ChHHHHHHHHHHH
Q psy9174 81 ETMLYTIDRINA--ELTMNLTLGAHVLDDCD----QDTHGLEMAVDFI 122 (127)
Q Consensus 81 lAmiFAIeEIN~--~LLPNITLGy~I~DsC~----~~~~al~~~l~~l 122 (127)
.|+.+||||||+ .+||+.++.+.++|+|+ ++..+...+..++
T Consensus 22 ~a~~lAve~IN~~gg~l~G~~l~~~~~D~~~~~~~~~~~a~~~a~~~~ 69 (396)
T cd06373 22 PAIDIAVERVNADPGLLPGHNITLVFEDSECKCGCSESEAPLVAVDLY 69 (396)
T ss_pred hHHHHHHHHHhcCCCcCCCeEEEEEEecCccccccchhhhHHHHHHHH
Confidence 589999999999 59999999999999999 7888888888776
No 23
>cd06392 PBP1_iGluR_delta_1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta1 receptor of an orphan glutamate receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta1 receptor of an orphan glutamate receptor family. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 may be closer related to non-NMDA receptors. In contrast to GluRdelta2, GluRdel
Probab=96.34 E-value=0.0097 Score=50.51 Aligned_cols=48 Identities=4% Similarity=0.138 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHhc--ccCCCceEeeEE-ecCCCChHHHHHHHHHHHhccC
Q psy9174 79 ALETMLYTIDRINA--ELTMNLTLGAHV-LDDCDQDTHGLEMAVDFIKGRV 126 (127)
Q Consensus 79 ~~lAmiFAIeEIN~--~LLPNITLGy~I-~DsC~~~~~al~~~l~~lsg~~ 126 (127)
.-.|+-+||+.+|+ ++|||.+|=+++ +++-++...+..++.++++..|
T Consensus 13 ~~~af~~Av~~~N~~~~~l~~~~L~~~~~~~~~~d~F~~~~~ac~l~~~gV 63 (400)
T cd06392 13 DDRVFQLAVSDLSLNDDILQSEKITYSIKSIEANNPFQAVQEACDLMTQGI 63 (400)
T ss_pred HHHHHHHHHHHhccCccccCCceEEEEEEecCCCChhHHHHHHHHHHhcCe
Confidence 34899999999998 899999999999 9998999999999999987655
No 24
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th
Probab=95.95 E-value=0.046 Score=41.14 Aligned_cols=63 Identities=21% Similarity=0.208 Sum_probs=50.4
Q ss_pred EEEEEEeecccCCccccccCchhHHHHHHHHHHHHHHHhc-ccCCCceEeeEEecCCCChHHHHHHHHHHHhc
Q psy9174 53 LGGLMMIHSRSESSVCGPIMAQGGIQALETMLYTIDRINA-ELTMNLTLGAHVLDDCDQDTHGLEMAVDFIKG 124 (127)
Q Consensus 53 IGglFplh~~~~~~~C~~~~~~~~~q~~lAmiFAIeEIN~-~LLPNITLGy~I~DsC~~~~~al~~~l~~lsg 124 (127)
||.++|.+.. ....+.+...++..|+++||+ -.++|.++.+.++|++++...+.+.+-.++..
T Consensus 2 IG~i~p~~g~---------~~~~~~~~~~~~~~a~~~~n~~~g~~g~~~~~~~~d~~~~~~~~~~~~~~l~~~ 65 (299)
T cd04509 2 IGVLFPLSGP---------YAEYGAFRLAGAQLAVEEINAKGGIPGRKLELVIYDDQSDPARALAAARRLCQQ 65 (299)
T ss_pred eeEEEcCCCc---------chhcCHHHHHHHHHHHHHHHhcCCCCCcEEEEEEecCCCCHHHHHHHHHHHhcc
Confidence 6778876631 134467778899999999999 88899999999999999888888777776654
No 25
>cd06391 PBP1_iGluR_delta_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta2 receptor of an orphan glutamate receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta2 receptor of an orphan glutamate receptor family. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 are closer related to non-NMDA receptors. GluRdelta2 was shown to function as a
Probab=95.85 E-value=0.023 Score=47.83 Aligned_cols=45 Identities=13% Similarity=0.268 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhc--ccCCCc--eEeeEEecCCCChHHHHHHHHHHHhccC
Q psy9174 81 ETMLYTIDRINA--ELTMNL--TLGAHVLDDCDQDTHGLEMAVDFIKGRV 126 (127)
Q Consensus 81 lAmiFAIeEIN~--~LLPNI--TLGy~I~DsC~~~~~al~~~l~~lsg~~ 126 (127)
.||-+||+.||+ ++|||. ++=+++.|++ +...+.+.+.++++..+
T Consensus 15 ~Af~~Ai~~iN~~~~~l~~~~l~~~~~~~d~~-d~f~a~~~~c~l~~~gv 63 (400)
T cd06391 15 EVFRMAVADLNQNNEILQTEKITVSVTFVDGN-NPFQAVQEACELMNQGI 63 (400)
T ss_pred HHHHHHHHHhcCCccccCCCcceEEEEEeeCC-CcHHHHHHHHHHHhCCe
Confidence 399999999998 899988 6666999997 66779999988887654
No 26
>cd06371 PBP1_sensory_GC_DEF_like Ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. This group includes the ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. They share a similar topology with an N-terminal extracellular ligand-binding domain, a single transmembrane domain, and a C-terminal cytosolic region that contains kinase-like and catalytic domains. GC-D is specifically expressed in a subpopulation of olfactory sensory neurons. GC-E and GC-F are colocalized within the same photoreceptor cells of the retina and have important roles in phototransduction. Unlike the other family members, GC-E and GC-F have no known extracellular ligands. Instead, they are activated under low calcium conditions by guanylyl cyclase activating proteins called GCAPs. GC-D expressing neurons have been implicated in pheromone detection and GC-D is phyloge
Probab=95.08 E-value=0.047 Score=45.09 Aligned_cols=41 Identities=15% Similarity=0.164 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhc--ccCCCceEeeEEecCCCChHHHHHHHHH
Q psy9174 80 LETMLYTIDRINA--ELTMNLTLGAHVLDDCDQDTHGLEMAVD 120 (127)
Q Consensus 80 ~lAmiFAIeEIN~--~LLPNITLGy~I~DsC~~~~~al~~~l~ 120 (127)
-.|+-+||||||+ .+||+.++-+.++|+.++...++.....
T Consensus 20 ~~a~~lAie~iN~~g~il~g~~l~~~~~d~~~~~~~a~~~~~~ 62 (382)
T cd06371 20 DVAARLAVSRINRDPSLSLGYWFDYVLLPEPCETSRALAAFLG 62 (382)
T ss_pred HHHHHHHHHHHhCCCCCCCCceEEEEEecCCCChhHHHHHHHc
Confidence 3489999999999 7889999999999998888778766543
No 27
>cd06380 PBP1_iGluR_AMPA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor, a member of the glutamate-receptor ion channels (iGluRs). AMPA receptors are the major mediators of excitatory synaptic transmission in the central nervous system. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excita
Probab=94.65 E-value=0.098 Score=42.57 Aligned_cols=48 Identities=15% Similarity=0.097 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHhc--ccCCCceEeeEEecC-CCChHHHHHHHHHHHhccC
Q psy9174 79 ALETMLYTIDRINA--ELTMNLTLGAHVLDD-CDQDTHGLEMAVDFIKGRV 126 (127)
Q Consensus 79 ~~lAmiFAIeEIN~--~LLPNITLGy~I~Ds-C~~~~~al~~~l~~lsg~~ 126 (127)
...|+-+||++||+ +.||++.|-.++.++ +++...+.+.+-++++..|
T Consensus 13 ~~~a~~~Av~~iN~~~~~~~~~~l~~~~~~~~~~d~~~~~~~~c~ll~~~V 63 (382)
T cd06380 13 EYSAFRFAISQHNTNPNSTAPFKLLPHVDNLDTSDSFALTNAICSQLSRGV 63 (382)
T ss_pred HHHHHHHHHHHhcccccccCCeeeeeeeeEecccchHHHHHHHHHHHhcCc
Confidence 44789999999998 788999998887776 4678888888888887544
No 28
>cd06340 PBP1_ABC_ligand_binding_like_6 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=94.22 E-value=0.16 Score=40.84 Aligned_cols=51 Identities=20% Similarity=0.070 Sum_probs=43.8
Q ss_pred hhHHHHHHHHHHHHHHHhc-c---cCCCceEeeEEecCCCChHHHHHHHHHHHhc
Q psy9174 74 QGGIQALETMLYTIDRINA-E---LTMNLTLGAHVLDDCDQDTHGLEMAVDFIKG 124 (127)
Q Consensus 74 ~~~~q~~lAmiFAIeEIN~-~---LLPNITLGy~I~DsC~~~~~al~~~l~~lsg 124 (127)
..+.+...++..|+||||+ - .+++.++.+.++|++.++..+.+.+-+++..
T Consensus 14 ~~g~~~~~g~~lA~~~iN~~GGi~~i~G~~v~lv~~D~~~~~~~a~~~~~~li~~ 68 (347)
T cd06340 14 AIGQQCKAGAELAVEEINAAGGIKSLGGAKLELVFGDSQGNPDIGATEAERLITE 68 (347)
T ss_pred hhCHHHHHHHHHHHHHHHhcCCccCCCCceEEEEEecCCCCHHHHHHHHHHHhcc
Confidence 3456677889999999999 3 6899999999999999999999888888754
No 29
>cd06384 PBP1_NPR_B Ligand-binding domain of type B natriuretic peptide receptor. Ligand-binding domain of type B natriuretic peptide receptor (NPR-B). NPR-B is one of three known single membrane-spanning natriuretic peptide receptors that have been identified. Natriuretic peptides are family of structurally related but genetically distinct hormones/paracrine factors that regulate blood volume, blood pressure, ventricular hypertrophy, pulmonary hypertension, fat metabolism, and long bone growth. In mammals there are three natriuretic peptides: ANP, BNP, and CNP. Like NPR-A (or GC-A), NPR-B (or GC-B) is a transmembrane guanylyl cyclase, an enzyme that catalyzes the synthesis of cGMP. NPR-B is the predominant natriuretic peptide receptor in the brain. The rank of order activation of NPR-B by natriuretic peptides is CNPANPBNP. Homozygous inactivating mutations in human NPR-B cause a form of short-limbed dwarfism known as acromesomelic dysplasia type Maroteaux.
Probab=94.19 E-value=0.13 Score=42.48 Aligned_cols=33 Identities=12% Similarity=0.131 Sum_probs=28.0
Q ss_pred HHHHH-HHHHHHHHHHhc--ccCCCceEeeEEecCC
Q psy9174 76 GIQAL-ETMLYTIDRINA--ELTMNLTLGAHVLDDC 108 (127)
Q Consensus 76 ~~q~~-lAmiFAIeEIN~--~LLPNITLGy~I~DsC 108 (127)
+|+.+ .|+-+||||||+ .+|||.+|.+.++|+.
T Consensus 16 ~~~~~~~a~~lAieeiN~~g~il~g~~l~~~~~D~~ 51 (399)
T cd06384 16 AWPRVGPAIRMAVERIQNKGKLLRGYTITLLNKSSE 51 (399)
T ss_pred ehhhhHHHHHHHHHHHhccCCcCCCceEEEEEeccC
Confidence 45555 499999999999 6899999999999963
No 30
>cd06330 PBP1_Arsenic_SBP_like Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea that is predicted to be involved in the efflux of toxic compounds. Members of this subgroup include proteins from Herminiimonas arsenicoxydans, which is resistant to arsenic and various heavy metals such as cadmium and zinc. Moreover, they show significant sequence similarity to the cluster of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa.
Probab=94.08 E-value=0.3 Score=38.90 Aligned_cols=50 Identities=16% Similarity=0.147 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHHHHHHhc-ccCCCceEeeEEecCCCChHHHHHHHHHHHhc
Q psy9174 75 GGIQALETMLYTIDRINA-ELTMNLTLGAHVLDDCDQDTHGLEMAVDFIKG 124 (127)
Q Consensus 75 ~~~q~~lAmiFAIeEIN~-~LLPNITLGy~I~DsC~~~~~al~~~l~~lsg 124 (127)
.+.....++..|+|+||+ -.+++.++.+.++|++.+...+.+.+-+++..
T Consensus 15 ~g~~~~~g~~~a~~~iN~~ggi~G~~v~~~~~D~~~~~~~a~~~a~~li~~ 65 (346)
T cd06330 15 FGEPARNGAELAVEEINAAGGIGGRKIELVVRDEAGKPDEAIREARELVEN 65 (346)
T ss_pred hcHHHHHHHHHHHHHHhhcCCcCCeEEEEEEecCCCCHHHHHHHHHHHHhc
Confidence 345566789999999999 77789999999999999999999988888864
No 31
>cd06379 PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer ccomposed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. When co-expressed with NR1, the NR3 subunits form receptors that are activated by glycine alone and therefore
Probab=93.41 E-value=0.44 Score=38.80 Aligned_cols=59 Identities=10% Similarity=0.125 Sum_probs=37.2
Q ss_pred CCEEEEEEEEeecccCCccccccCchhHHHHHHHHHHHHHHHhc--ccCCCceEeeEEecCCCChHHHHHHHH-HHHhc
Q psy9174 49 GDVLLGGLMMIHSRSESSVCGPIMAQGGIQALETMLYTIDRINA--ELTMNLTLGAHVLDDCDQDTHGLEMAV-DFIKG 124 (127)
Q Consensus 49 GDv~IGglFplh~~~~~~~C~~~~~~~~~q~~lAmiFAIeEIN~--~LLPNITLGy~I~DsC~~~~~al~~~l-~~lsg 124 (127)
..+.||++||.. +.-.++-+|||+||+ ..+|+++|+....+...++..+..++- .+++.
T Consensus 18 ~~i~IG~i~~~~-----------------~~~~~~~~Ai~~~N~~~~~~~~~~l~~~~i~~~~~~~~~a~~~~~~Li~~ 79 (377)
T cd06379 18 KTVNIGAVLSNK-----------------KHEQEFKEAVNAANVERHGSRKIKLNATTITHDPNPIQTALSVCEQLISN 79 (377)
T ss_pred cEEEEeEEecch-----------------hHHHHHHHHHHHHhhhhcCCcceeeccceEeecCChhhHHHHHHHHHhhc
Confidence 458899999610 112456699999999 567888888774444445544444443 34443
No 32
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=93.06 E-value=0.38 Score=37.77 Aligned_cols=50 Identities=18% Similarity=0.177 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHHHHHHhc-ccCCCceEeeEEecCCCChHHHHHHHHHHHhc
Q psy9174 75 GGIQALETMLYTIDRINA-ELTMNLTLGAHVLDDCDQDTHGLEMAVDFIKG 124 (127)
Q Consensus 75 ~~~q~~lAmiFAIeEIN~-~LLPNITLGy~I~DsC~~~~~al~~~l~~lsg 124 (127)
.+-....++..|+++||+ ..+++.++-+.++|+++++..+.+.+-.++..
T Consensus 15 ~g~~~~~g~~~a~~~iN~~ggi~g~~i~~~~~D~~~~~~~~~~~~~~li~~ 65 (334)
T cd06342 15 LGKDIKNGAQLAVEDINAKGGGKGVKLELVVEDDQADPKQAVAVAQKLVDD 65 (334)
T ss_pred hcHHHHHHHHHHHHHHHhcCCCCCeEEEEEEecCCCChHHHHHHHHHHHhC
Confidence 345566789999999999 78899999999999999999888777766653
No 33
>cd06351 PBP1_iGluR_N_LIVBP_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs). N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs). While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors characterized by their response to glutamate agonists: N-methyl-aspartate (NMDA) and non-NMDA receptors
Probab=92.94 E-value=0.27 Score=38.23 Aligned_cols=46 Identities=15% Similarity=0.145 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHhc--ccCCCceEeeEEecCC-CChHHHHHHHHHHH
Q psy9174 77 IQALETMLYTIDRINA--ELTMNLTLGAHVLDDC-DQDTHGLEMAVDFI 122 (127)
Q Consensus 77 ~q~~lAmiFAIeEIN~--~LLPNITLGy~I~DsC-~~~~~al~~~l~~l 122 (127)
-....|+.+||++||+ .++|+..+.+++.+.+ .++..+.+.+-+++
T Consensus 11 ~~~~~a~~~Ai~~iN~~~~~~~~~~l~~~~~~~~~~d~~~~~~~~c~l~ 59 (328)
T cd06351 11 RKEELAFRAAIDALNTENLNALPTKLSVEVVEVNTNDPFSLLRAVCDLL 59 (328)
T ss_pred HHHHHHHHHHHHHhccCccccCCeeEEEEEEEeCCCChHHHHHHHHHHH
Confidence 3455789999999999 8889999999999988 66666666666665
No 34
>cd06345 PBP1_ABC_ligand_binding_like_10 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=91.86 E-value=0.61 Score=37.23 Aligned_cols=50 Identities=10% Similarity=0.031 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHHHHHHhc-ccCCCceEeeEEecCCCChHHHHHHHHHHHhc
Q psy9174 75 GGIQALETMLYTIDRINA-ELTMNLTLGAHVLDDCDQDTHGLEMAVDFIKG 124 (127)
Q Consensus 75 ~~~q~~lAmiFAIeEIN~-~LLPNITLGy~I~DsC~~~~~al~~~l~~lsg 124 (127)
.+-....++..|+|+||+ --+++.++-+.++|+.+++..+.+.+-.++..
T Consensus 15 ~G~~~~~g~~~A~~~iN~~ggi~g~~v~l~~~D~~~~~~~a~~~~~~li~~ 65 (344)
T cd06345 15 TGEAMWNGAELAAEEINAAGGILGRKVELVFEDTEGSPEDAVRAFERLVSQ 65 (344)
T ss_pred cCHHHHHHHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHHHHHHHhcc
Confidence 356677899999999999 66789999999999999999999999888864
No 35
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=91.81 E-value=0.63 Score=36.77 Aligned_cols=49 Identities=12% Similarity=0.157 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHhc-ccCCCceEeeEEecCCCChHHHHHHHHHHHhc
Q psy9174 76 GIQALETMLYTIDRINA-ELTMNLTLGAHVLDDCDQDTHGLEMAVDFIKG 124 (127)
Q Consensus 76 ~~q~~lAmiFAIeEIN~-~LLPNITLGy~I~DsC~~~~~al~~~l~~lsg 124 (127)
+-....++..|+||||+ -=+++-++-+.++|+++++..+.+.+-+++..
T Consensus 16 g~~~~~g~~lA~~~iN~~ggi~G~~iel~~~D~~~~p~~a~~~a~~li~~ 65 (312)
T cd06346 16 GPPMADAAELAVKEVNAAGGVLGEPVTLVTADTQTDPAAGVAAATKLVNV 65 (312)
T ss_pred ChhHHHHHHHHHHHHHHhCCCCCceEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 34455789999999999 33488999999999999999999999888753
No 36
>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=91.47 E-value=0.7 Score=36.15 Aligned_cols=48 Identities=15% Similarity=0.119 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHhc-ccCCCceEeeEEecCCCChHHHHHHHHHHHhc
Q psy9174 77 IQALETMLYTIDRINA-ELTMNLTLGAHVLDDCDQDTHGLEMAVDFIKG 124 (127)
Q Consensus 77 ~q~~lAmiFAIeEIN~-~LLPNITLGy~I~DsC~~~~~al~~~l~~lsg 124 (127)
-....++..|+|+||+ -=+++.+|.+.++|+++++..+.+.+-+++..
T Consensus 17 ~~~~~g~~~a~~~iN~~ggi~g~~l~~~~~D~~~~~~~~~~~~~~li~~ 65 (334)
T cd06347 17 QSEKNGAKLAVKEINAAGGVLGKKIELVVEDNKSDKEEAANAATRLIDQ 65 (334)
T ss_pred HhHHHHHHHHHHHHHhcCCCCCeeEEEEEecCCCChHHHHHHHHHHhcc
Confidence 3455789999999999 44789999999999999999999999888865
No 37
>cd06394 PBP1_iGluR_Kainate_KA1_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels act
Probab=91.04 E-value=0.93 Score=37.40 Aligned_cols=49 Identities=10% Similarity=0.114 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHhc--ccCCCceEeeEEecCCCChH-HHHHHHHHHHhc
Q psy9174 76 GIQALETMLYTIDRINA--ELTMNLTLGAHVLDDCDQDT-HGLEMAVDFIKG 124 (127)
Q Consensus 76 ~~q~~lAmiFAIeEIN~--~LLPNITLGy~I~DsC~~~~-~al~~~l~~lsg 124 (127)
|-+.-.|+-+||||||+ .++++.+|=+++.|+-.++. .+...+...++.
T Consensus 13 G~~~~~a~~lAv~~iN~~~~~~~~~~l~~~~~d~~~d~~f~~~~~~~~~l~~ 64 (333)
T cd06394 13 GRGERLALALARERINRAPERLGKARVEVDIFELLRDSQYETTDTMCQILPK 64 (333)
T ss_pred cHHHHHHHHHHHHHhccCccccCCceeEEEEeeccccChHHHHHHHHHHHhc
Confidence 45556789999999998 79999899999999877664 344444454443
No 38
>cd06387 PBP1_iGluR_AMPA_GluR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=90.56 E-value=0.78 Score=38.42 Aligned_cols=48 Identities=13% Similarity=0.052 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhc--ccCCC-ceEeeEEecCCCCh-HHHHHHHHHHHhccC
Q psy9174 79 ALETMLYTIDRINA--ELTMN-LTLGAHVLDDCDQD-THGLEMAVDFIKGRV 126 (127)
Q Consensus 79 ~~lAmiFAIeEIN~--~LLPN-ITLGy~I~DsC~~~-~~al~~~l~~lsg~~ 126 (127)
.-.|+-|||+++|+ .++|+ .+|-++|...-..+ ..+.+.+=++++..|
T Consensus 13 ~~~aF~~Av~~~N~~~~~~~~~~~l~~~i~~~~~~dsf~~~~~~C~l~~~GV 64 (372)
T cd06387 13 EHSAFRFAVQLYNTNQNTTEKPFHLNYHVDHLDSSNSFSVTNAFCSQFSRGV 64 (372)
T ss_pred HHHHHHHHHHHhcccccccccCeEEEEeeEEecCCChHHHHHHHHHHhhccc
Confidence 34899999999999 68887 79999876654433 334444446665443
No 39
>cd06377 PBP1_iGluR_NMDA_NR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR3 subunit of NMDA receptor family. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR3 subunit of NMDA receptor family. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer composed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. Among NMDA receptor subtypes, the NR2B subunit containing receptors appear particularly important for pain perception; thus NR2B-selective antagonists may be useful in
Probab=89.71 E-value=1.3 Score=37.60 Aligned_cols=57 Identities=28% Similarity=0.308 Sum_probs=41.2
Q ss_pred cCCCEEEEEEEEeecccCCccccccCchhHHHHHHHHHHHHHHHhc--ccCCCceEeeEEecCCCChHHHHHHHH
Q psy9174 47 ISGDVLLGGLMMIHSRSESSVCGPIMAQGGIQALETMLYTIDRINA--ELTMNLTLGAHVLDDCDQDTHGLEMAV 119 (127)
Q Consensus 47 ~~GDv~IGglFplh~~~~~~~C~~~~~~~~~q~~lAmiFAIeEIN~--~LLPNITLGy~I~DsC~~~~~al~~~l 119 (127)
.++-+.|||+|+- . -+--.|+.|||+.+|+ .+++|.+|=+++...-..++.++...+
T Consensus 15 ~~~~i~iG~if~~-------------~---~~~~~af~~Av~~~N~~~~l~~~~~L~~~~~~~~~~dsf~~~~~v 73 (382)
T cd06377 15 IGHTVRLGALLVR-------------A---PAPRDRVLAALARANRAPLLPYNLSLEVVAAAAPSRDPASLLRSV 73 (382)
T ss_pred cCCceeeeEEecC-------------C---chHHHHHHHHHHHhccccccccCceeEEeEEEcCCCChHHHHHHH
Confidence 3445899999951 1 1235689999999999 788999999999886555544444433
No 40
>PF13433 Peripla_BP_5: Periplasmic binding protein domain; PDB: 1QNL_A 1QO0_A 1PEA_A.
Probab=88.94 E-value=2 Score=36.54 Aligned_cols=49 Identities=22% Similarity=0.251 Sum_probs=36.2
Q ss_pred hhHHHHHHHHHHHHHHHhc--ccCCCceEeeEEecCCCChHHHHHHHHHHHh
Q psy9174 74 QGGIQALETMLYTIDRINA--ELTMNLTLGAHVLDDCDQDTHGLEMAVDFIK 123 (127)
Q Consensus 74 ~~~~q~~lAmiFAIeEIN~--~LLPNITLGy~I~DsC~~~~~al~~~l~~ls 123 (127)
..+-....++.+||||||. -+| +..|-..++|..++...--+.+-+++.
T Consensus 15 ~~e~~~~~~~~lAI~eINa~GGvl-G~~le~v~~Dp~Sd~~~ya~~A~~Li~ 65 (363)
T PF13433_consen 15 ISERSLLDGALLAIEEINAAGGVL-GRQLEPVIYDPASDPSTYAEKAEKLIR 65 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTBT-TB--EEEEE--TT-HHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHhcCCcC-CeEEEEEEECCCCCHHHHHHHHHHHHH
Confidence 4456777899999999999 655 779999999999999988888877765
No 41
>cd06343 PBP1_ABC_ligand_binding_like_8 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=88.67 E-value=2.4 Score=33.99 Aligned_cols=67 Identities=13% Similarity=0.100 Sum_probs=51.2
Q ss_pred CCCEEEEEEEEeecccCCccccccCchhHHHHHHHHHHHHHHHhc-ccCCCceEeeEEecCCCChHHHHHHHHHHHh
Q psy9174 48 SGDVLLGGLMMIHSRSESSVCGPIMAQGGIQALETMLYTIDRINA-ELTMNLTLGAHVLDDCDQDTHGLEMAVDFIK 123 (127)
Q Consensus 48 ~GDv~IGglFplh~~~~~~~C~~~~~~~~~q~~lAmiFAIeEIN~-~LLPNITLGy~I~DsC~~~~~al~~~l~~ls 123 (127)
+..|.||.++|+.-. .-..+-+...+...|+++||+ .-+.+.++-+.++|++.+...+.+.+-+++.
T Consensus 4 ~~~i~iG~~~~~sG~---------~a~~g~~~~~g~~~a~~~~Na~gGi~G~~i~l~~~D~~~~~~~a~~~a~~li~ 71 (362)
T cd06343 4 DTEIKIGNTMPLSGP---------ASAYGVIGRTGAAYFFMINNDQGGINGRKIELIVEDDGYSPPKTVEQTRKLVE 71 (362)
T ss_pred CceEEEeeccCCCCc---------hhhhcHHHHHHHHHHHHHHHhcCCcCCeEEEEEEecCCCChHHHHHHHHHHHh
Confidence 456888888876521 122344555678899999999 5556899999999999999999888888875
No 42
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=88.30 E-value=1.4 Score=34.97 Aligned_cols=50 Identities=22% Similarity=0.185 Sum_probs=42.0
Q ss_pred hhHHHHHHHHHHHHHHHhc-ccCCCceEeeEEecCCCChHHHHHHHHHHHh
Q psy9174 74 QGGIQALETMLYTIDRINA-ELTMNLTLGAHVLDDCDQDTHGLEMAVDFIK 123 (127)
Q Consensus 74 ~~~~q~~lAmiFAIeEIN~-~LLPNITLGy~I~DsC~~~~~al~~~l~~ls 123 (127)
..+-+...++..|+||||+ -=.++.++-+.++|+++++..+.+.+-.++.
T Consensus 14 ~~G~~~~~g~~~a~~~iN~~ggi~G~~i~l~~~D~~~~~~~a~~~a~~li~ 64 (340)
T cd06349 14 QYGTQWKRAFDLALDEINAAGGVGGRPLNIVFEDSKSDPRQAVTIAQKFVA 64 (340)
T ss_pred hcCccHHHHHHHHHHHHHhhCCcCCeEEEEEEeCCCCChHHHHHHHHHHhc
Confidence 3456667788899999999 4448999999999999999999988887775
No 43
>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins. The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=87.15 E-value=4.2 Score=31.88 Aligned_cols=50 Identities=16% Similarity=0.046 Sum_probs=39.9
Q ss_pred hhHHHHHHHHHHHHHHHhc-ccCCCceEeeEEecCCCChHHHHHHHHHHHh
Q psy9174 74 QGGIQALETMLYTIDRINA-ELTMNLTLGAHVLDDCDQDTHGLEMAVDFIK 123 (127)
Q Consensus 74 ~~~~q~~lAmiFAIeEIN~-~LLPNITLGy~I~DsC~~~~~al~~~l~~ls 123 (127)
..+-....++..|+|+||+ --+.|.++-+..+|+..++..+.+..-.++.
T Consensus 15 ~~g~~~~~~~~~a~~~iN~~ggi~G~~v~l~~~D~~~d~~~~~~~~~~l~~ 65 (336)
T cd06326 15 ALGRAYRAGAQAYFDAVNAAGGVNGRKIELVTLDDGYEPERTVANTRKLIE 65 (336)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCcCCceEEEEEeCCCCChHHHHHHHHHHHh
Confidence 3455567789999999999 6668899999999999888877766666654
No 44
>cd06333 PBP1_ABC-type_HAAT_like Type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. This subgroup includes the type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. Members of this subgroup are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=85.77 E-value=4.9 Score=31.40 Aligned_cols=49 Identities=29% Similarity=0.218 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHHHHHHhcccCCCceEeeEEecCCCChHHHHHHHHHHHh
Q psy9174 75 GGIQALETMLYTIDRINAELTMNLTLGAHVLDDCDQDTHGLEMAVDFIK 123 (127)
Q Consensus 75 ~~~q~~lAmiFAIeEIN~~LLPNITLGy~I~DsC~~~~~al~~~l~~ls 123 (127)
.+.....++-.|+|+||...+++-++-+.+.|+..+...+.+.+-.++.
T Consensus 15 ~g~~~~~g~~~a~~~iN~ggi~g~~i~l~~~d~~~~~~~a~~~~~~li~ 63 (312)
T cd06333 15 LGIPEKKTLELLPDEINAGGIGGEKVELIVLDDGSDPTKAVTNARKLIE 63 (312)
T ss_pred hCHHHHHHHHHHHHHHhcCCcCCeEEEEEEecCCCCHHHHHHHHHHHHh
Confidence 3456667999999999984457889999999999999888877776664
No 45
>cd06329 PBP1_SBP_like_3 Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=85.18 E-value=3.3 Score=33.12 Aligned_cols=50 Identities=18% Similarity=0.071 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHhc-ccCCCceEeeEEecCCCChHHHHHHHHHHHhcc
Q psy9174 76 GIQALETMLYTIDRINA-ELTMNLTLGAHVLDDCDQDTHGLEMAVDFIKGR 125 (127)
Q Consensus 76 ~~q~~lAmiFAIeEIN~-~LLPNITLGy~I~DsC~~~~~al~~~l~~lsg~ 125 (127)
+-....++..|+++||+ --..+.++-+.++|++.++..+.+.+-+++...
T Consensus 16 G~~~~~g~~~a~~~iN~~GGi~G~~i~l~~~D~~~~p~~a~~~a~~lv~~~ 66 (342)
T cd06329 16 GELVRRGLQLAADEINAKGGVDGRPIELVEEDNKGSPQEALRKAQKAIDDG 66 (342)
T ss_pred cHHHHHHHHHHHHHHHhcCCcCCeEEEEEeccCCCChHHHHHHHHHHHHhC
Confidence 45556788999999999 556788999999999999999999888887643
No 46
>cd06390 PBP1_iGluR_AMPA_GluR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=85.14 E-value=1.9 Score=35.71 Aligned_cols=44 Identities=7% Similarity=0.118 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHhc--ccCCCceEeeEEecCCCChHHHHHHHHHHHhccC
Q psy9174 78 QALETMLYTIDRINA--ELTMNLTLGAHVLDDCDQDTHGLEMAVDFIKGRV 126 (127)
Q Consensus 78 q~~lAmiFAIeEIN~--~LLPNITLGy~I~DsC~~~~~al~~~l~~lsg~~ 126 (127)
+.-.|+-|||++||+ .|+|.+.. . .-.+...+.+.+=++++..|
T Consensus 12 ~~~~af~~av~~~N~~~~l~~~~~~----~-~~~dsf~~~~~~C~~~~~gV 57 (364)
T cd06390 12 QEHAAFRFALSQLTEPPKLLPQIDI----V-NISDSFEMTYTFCSQFSKGV 57 (364)
T ss_pred HHHHHHHHHHHHhccCcccccceEE----e-ccccHHHHHHHHHHHhhcCc
Confidence 445899999999999 88887652 1 22344445555555555443
No 47
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=83.75 E-value=4.6 Score=30.15 Aligned_cols=50 Identities=14% Similarity=0.098 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHHHHHHhc-ccCCCceEeeEEecCCCChHHHHHHHHHHHhc
Q psy9174 75 GGIQALETMLYTIDRINA-ELTMNLTLGAHVLDDCDQDTHGLEMAVDFIKG 124 (127)
Q Consensus 75 ~~~q~~lAmiFAIeEIN~-~LLPNITLGy~I~DsC~~~~~al~~~l~~lsg 124 (127)
.+.+...++..|++++|+ -.++|.++-+.++|+..+...+.+..-+++..
T Consensus 15 ~~~~~~~g~~~a~~~~n~~gg~~g~~v~~~~~d~~~~~~~~~~~~~~l~~~ 65 (298)
T cd06268 15 LGEPVRNGAELAVEEINAAGGILGRKIELVVEDTQGDPEAAAAAARELVDD 65 (298)
T ss_pred cChhHHHHHHHHHHHHHhcCCCCCeEEEEEEecCCCCHHHHHHHHHHHHhC
Confidence 345667789999999999 77899999999999999888777777666654
No 48
>cd06381 PBP1_iGluR_delta_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. This CD represents the N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 are more homologous to non-NMDA receptors. G
Probab=76.42 E-value=8.7 Score=31.80 Aligned_cols=45 Identities=11% Similarity=0.217 Sum_probs=31.4
Q ss_pred HHHHHHH--HHhcccCCCceEeeEE-ecCCCChHHHHHHHHHHHhccC
Q psy9174 82 TMLYTID--RINAELTMNLTLGAHV-LDDCDQDTHGLEMAVDFIKGRV 126 (127)
Q Consensus 82 AmiFAIe--EIN~~LLPNITLGy~I-~DsC~~~~~al~~~l~~lsg~~ 126 (127)
|+-+|+. +||+...+|-++=..+ +|+-+++..|...+-.+++..|
T Consensus 16 af~~ala~~~iN~~gg~~~~~i~~v~~dd~~d~~~a~~~~c~Li~~gV 63 (363)
T cd06381 16 VFAVAVIDLNINEQILQTEKITLSISFIDLNNHFDAVQEACDLMNQGI 63 (363)
T ss_pred HHHHHHHHhhccccccCCccceeeeEeecCCChHHHHHHHHHHHhcCc
Confidence 5555555 5566666776654444 8888899989999888887543
No 49
>cd06344 PBP1_ABC_ligand_binding_like_9 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine/isoleucine/valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=76.42 E-value=12 Score=29.73 Aligned_cols=49 Identities=14% Similarity=0.074 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHHHHHHhc-ccCCCceEeeEEecCCCChHHHHHHHHHHHh
Q psy9174 75 GGIQALETMLYTIDRINA-ELTMNLTLGAHVLDDCDQDTHGLEMAVDFIK 123 (127)
Q Consensus 75 ~~~q~~lAmiFAIeEIN~-~LLPNITLGy~I~DsC~~~~~al~~~l~~ls 123 (127)
.+-....++-.|+||||. --.++.++-+.++|+..++..+.+.+-.++.
T Consensus 14 ~G~~~~~g~~lA~~~iNa~ggi~G~~ielv~~D~~~~p~~a~~~a~~li~ 63 (332)
T cd06344 14 LAEEILRGVAQAQTEINLQGGINGKLLKVVIANDGNDPEIAKKVADELVK 63 (332)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEECCCCChHHHHHHHHHHhc
Confidence 456667789999999999 5578999999999999999999988888775
No 50
>cd06331 PBP1_AmiC_like Type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF). This group includes the type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF), found in bacteria and Archaea. AmiC controls expression of the amidase operon by a ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon is induced. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two t
Probab=76.03 E-value=18 Score=28.58 Aligned_cols=49 Identities=20% Similarity=0.182 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHhc-ccCCCceEeeEEecCCCChHHHHHHHHHHHhc
Q psy9174 76 GIQALETMLYTIDRINA-ELTMNLTLGAHVLDDCDQDTHGLEMAVDFIKG 124 (127)
Q Consensus 76 ~~q~~lAmiFAIeEIN~-~LLPNITLGy~I~DsC~~~~~al~~~l~~lsg 124 (127)
+-....++..|+++||+ -=..+-++-+.++|+..++..+.+.+-.++..
T Consensus 16 g~~~~~g~~~a~~~iN~~gGi~G~~i~l~~~D~~~~p~~a~~~a~~Li~~ 65 (333)
T cd06331 16 EPSLRNAALLAIEEINAAGGILGRPLELVVEDPASDPAFAAKAARRLIRD 65 (333)
T ss_pred cHHHHHHHHHHHHHHHhcCCCCCeEEEEEEECCCCCHHHHHHHHHHHHhc
Confidence 34555678899999999 44568899999999999999998888777754
No 51
>KOG1055|consensus
Probab=75.62 E-value=4.4 Score=37.90 Aligned_cols=65 Identities=12% Similarity=0.137 Sum_probs=51.8
Q ss_pred CCCEEEEEEEEeecccC----CccccccCchhHHHHHHHHHHHHHHHhc--ccCCCceEeeEEecCCCChHHHHHHHHHH
Q psy9174 48 SGDVLLGGLMMIHSRSE----SSVCGPIMAQGGIQALETMLYTIDRINA--ELTMNLTLGAHVLDDCDQDTHGLEMAVDF 121 (127)
Q Consensus 48 ~GDv~IGglFplh~~~~----~~~C~~~~~~~~~q~~lAmiFAIeEIN~--~LLPNITLGy~I~DsC~~~~~al~~~l~~ 121 (127)
.-+..++|++|+..... ...|. =|.--|+|.+|+ +||||-.|-...+|+-|+...+.+..+++
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~g~~~~-----------Pav~~Al~~vn~~~~ilp~y~L~~~~~ds~C~~~~g~k~~fdl 107 (865)
T KOG1055|consen 39 RCPRRIVGIGPLGPGSGGWPGGQACL-----------PAVELALEDVNSRSDILPGYRLKLIHHDSECDPGQGTKALYDL 107 (865)
T ss_pred CCCceeeeeecCccccCCCcCccccc-----------HHHHHHHHHhhccccccCCcEEEEEeccccCCccccHHHHHHH
Confidence 34688899998865432 12232 256789999999 99999999999999999999999999988
Q ss_pred Hh
Q psy9174 122 IK 123 (127)
Q Consensus 122 ls 123 (127)
+-
T Consensus 108 l~ 109 (865)
T KOG1055|consen 108 LY 109 (865)
T ss_pred HH
Confidence 64
No 52
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=73.48 E-value=12 Score=30.99 Aligned_cols=47 Identities=13% Similarity=-0.044 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhc--ccCCC-ceEeeEEecCCC-ChHHHHHHHHHHHhccC
Q psy9174 80 LETMLYTIDRINA--ELTMN-LTLGAHVLDDCD-QDTHGLEMAVDFIKGRV 126 (127)
Q Consensus 80 ~lAmiFAIeEIN~--~LLPN-ITLGy~I~DsC~-~~~~al~~~l~~lsg~~ 126 (127)
-.|+-|||+.+|+ .++++ .+|-+++...-. +...+.+.+=++++..|
T Consensus 14 ~~af~~a~~~~n~~~~~~~~~~~l~~~~~~~~~~dsf~~~~~~C~~~~~gV 64 (371)
T cd06388 14 YTAFRLAIFLHNTSPNASEAPFNLVPHVDNIETANSFAVTNAFCSQYSRGV 64 (371)
T ss_pred HHHHHHHHHHhhccccccccceEEeeeeeecCCCChhHHHHHHHHHHhCCc
Confidence 3899999999998 46654 699998776544 34444444446666544
No 53
>cd06328 PBP1_SBP_like_2 Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=70.33 E-value=18 Score=28.80 Aligned_cols=51 Identities=16% Similarity=0.184 Sum_probs=42.1
Q ss_pred hhHHHHHHHHHHHHHHHhc--ccCCCceEeeEEecCCCChHHHHHHHHHHHhc
Q psy9174 74 QGGIQALETMLYTIDRINA--ELTMNLTLGAHVLDDCDQDTHGLEMAVDFIKG 124 (127)
Q Consensus 74 ~~~~q~~lAmiFAIeEIN~--~LLPNITLGy~I~DsC~~~~~al~~~l~~lsg 124 (127)
..+-....++..|+|+||+ --.++-++-+.+.|+.+++..+...+-.++..
T Consensus 14 ~~G~~~~~g~~lav~~inn~~ggi~G~~i~lv~~D~~~~p~~a~~~~~~li~~ 66 (333)
T cd06328 14 AYGKQTLTGFMLGLEYATGGTMQVDGRPIEVIVKDDAGNPEVAVSLARELIGD 66 (333)
T ss_pred hhhHHHHHHHHHHHHHHHhcCCCcCCEEEEEEEecCCCChHHHHHHHHHHHHh
Confidence 3455677789999999976 56778899999999999999998888777654
No 54
>cd06383 PBP1_iGluR_AMPA_Like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of uncharacterized AMPA-like receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of uncharacterized AMPA-like receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excitatory synaptic current.
Probab=66.33 E-value=16 Score=30.26 Aligned_cols=48 Identities=10% Similarity=-0.050 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHhcccCCCceEeeEEecC-------CCChHHHHHHHHHHHhcc
Q psy9174 76 GIQALETMLYTIDRINAELTMNLTLGAHVLDD-------CDQDTHGLEMAVDFIKGR 125 (127)
Q Consensus 76 ~~q~~lAmiFAIeEIN~~LLPNITLGy~I~Ds-------C~~~~~al~~~l~~lsg~ 125 (127)
|-+.-.||-+||+.+|++- |.+|-.++.++ |.+...+.+.+.++++..
T Consensus 11 ~~~~~~A~~~Av~~~N~~~--~~~l~~~~~~~~~~~~~~~~d~~~~~~~~C~~~~~g 65 (368)
T cd06383 11 NDVYKQIIDDALSYINRNI--GTGLSVVHQQVETNAEVNRNDVKVALIEVCDKADSA 65 (368)
T ss_pred hHHHHHHHHHHHHHHhcCC--CCceEEEEecccccccccCCcHHHHHHHHHHHHHcc
Confidence 4456789999999999832 77777777776 566666666688888543
No 55
>PRK15404 leucine ABC transporter subunit substrate-binding protein LivK; Provisional
Probab=64.96 E-value=50 Score=27.00 Aligned_cols=67 Identities=18% Similarity=0.120 Sum_probs=47.4
Q ss_pred CCEEEEEEEEeecccCCccccccCchhHHHHHHHHHHHHHHHhc-ccCCCceEeeEEecCCCChHHHHHHHHHHHhc
Q psy9174 49 GDVLLGGLMMIHSRSESSVCGPIMAQGGIQALETMLYTIDRINA-ELTMNLTLGAHVLDDCDQDTHGLEMAVDFIKG 124 (127)
Q Consensus 49 GDv~IGglFplh~~~~~~~C~~~~~~~~~q~~lAmiFAIeEIN~-~LLPNITLGy~I~DsC~~~~~al~~~l~~lsg 124 (127)
.-|.||.+.|+.-.. ...+-...-++-.|+|+||+ -=.-+-.+=+.+.|+..++..+.+.+-.++..
T Consensus 24 ~~I~IG~l~plSG~~---------a~~G~~~~~g~~~av~~iNa~GGi~G~~ielv~~D~~~~p~~a~~~~~~Li~~ 91 (369)
T PRK15404 24 DDIKIAIVGPMSGPV---------AQYGDMEFTGARQAIEDINAKGGIKGDKLEGVEYDDACDPKQAVAVANKVVND 91 (369)
T ss_pred CceEEEEeecCCCcc---------hhcCHhHHHHHHHHHHHHHhcCCCCCeEEEEEeecCCCCHHHHHHHHHHHHhC
Confidence 358999998765211 11233344567889999998 32346688888999999999998877666653
No 56
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=64.06 E-value=29 Score=27.34 Aligned_cols=49 Identities=12% Similarity=0.110 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHhc--ccC---CCceEeeEEecCCCChHHHHHHHHHHHhc
Q psy9174 76 GIQALETMLYTIDRINA--ELT---MNLTLGAHVLDDCDQDTHGLEMAVDFIKG 124 (127)
Q Consensus 76 ~~q~~lAmiFAIeEIN~--~LL---PNITLGy~I~DsC~~~~~al~~~l~~lsg 124 (127)
+-....++..|+++||. -+. .+.++-+.++|+..++..+.+.+-.++..
T Consensus 16 g~~~~~g~~la~~~iN~~ggi~~g~~g~~i~l~~~D~~~~~~~a~~~~~~li~~ 69 (345)
T cd06338 16 GQLTQRGYELWVEDVNAAGGIKGGGKGYPVELIYYDDQSNPARAARAYERLITQ 69 (345)
T ss_pred cHHHHHHHHHHHHHHHhcCCcccCCCCceEEEEEecCCCCHHHHHHHHHHHHhh
Confidence 44556788899999998 443 56789999999999999999998888764
No 57
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=61.27 E-value=34 Score=27.04 Aligned_cols=49 Identities=14% Similarity=0.170 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHhc-ccCCCceEeeEEecCCCChHHHHHHHHHHHhc
Q psy9174 76 GIQALETMLYTIDRINA-ELTMNLTLGAHVLDDCDQDTHGLEMAVDFIKG 124 (127)
Q Consensus 76 ~~q~~lAmiFAIeEIN~-~LLPNITLGy~I~DsC~~~~~al~~~l~~lsg 124 (127)
+-....+.-.|+|+||+ --+.+-++=+.++|+..++..+.+.+-.++..
T Consensus 16 g~~~~~g~~~a~~~iNa~ggi~G~~v~lv~~D~~~~p~~a~~~~~~li~~ 65 (344)
T cd06348 16 GQEQLAGLKLAEDRFNQAGGVNGRPIKLVIEDSGGDEAEAINAFQTLINK 65 (344)
T ss_pred CHhHHHHHHHHHHHHhhcCCcCCcEEEEEEecCCCChHHHHHHHHHHhhh
Confidence 34455678899999999 54567788899999999999999988888754
No 58
>cd06389 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=61.23 E-value=23 Score=29.09 Aligned_cols=43 Identities=5% Similarity=-0.047 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhcccCCCceEeeEEecCCC-ChHHHHHHHHHHHhcc
Q psy9174 80 LETMLYTIDRINAELTMNLTLGAHVLDDCD-QDTHGLEMAVDFIKGR 125 (127)
Q Consensus 80 ~lAmiFAIeEIN~~LLPNITLGy~I~DsC~-~~~~al~~~l~~lsg~ 125 (127)
-.|+-|||+.+|+. +.+|-++|...-. +...+.+.+=++++..
T Consensus 14 ~~af~~a~~~~n~~---~~~l~~~~~~~~~~dsf~~~~~~C~~~~~G 57 (370)
T cd06389 14 YSAFRVGMVQFSTS---EFRLTPHIDNLEVANSFAVTNAFCSQFSRG 57 (370)
T ss_pred HHHHHHHHHHhccc---CceeeeeeEEecccchHHHHHHHHHHhhcC
Confidence 38999999999982 3566665544333 3333333333555544
No 59
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=59.18 E-value=33 Score=24.21 Aligned_cols=54 Identities=13% Similarity=0.227 Sum_probs=35.9
Q ss_pred CCEEEEEEEEeecccCCccccccCchhHHHHHHHHHHHHHHHhcccCCCceEeeEEec
Q psy9174 49 GDVLLGGLMMIHSRSESSVCGPIMAQGGIQALETMLYTIDRINAELTMNLTLGAHVLD 106 (127)
Q Consensus 49 GDv~IGglFplh~~~~~~~C~~~~~~~~~q~~lAmiFAIeEIN~~LLPNITLGy~I~D 106 (127)
-.+-|-|+..+.........-. --..+-.+.++++|||..-| ||.++|-+.++.
T Consensus 21 ~~i~ikg~~tl~kpv~~KsS~r-rgs~d~~f~ETFVFqi~l~q---L~~V~L~fsv~~ 74 (103)
T cd08684 21 PTIYIKGILTLPKPVHFKSSAK-EGSNDIEFMETFVFAIKLQN---LQTVRLVFKIQT 74 (103)
T ss_pred CeeEEEEEEecCCCccccchhh-cCCCChhHHHHHHHHHHHhh---ccceEEEEEeec
Confidence 3467778776643221111001 12446778999999998877 899999999988
No 60
>cd06327 PBP1_SBP_like_1 Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Solute binding proteins are the primary specific receptors that initiate uptake of a broad range of solutes, including amino acids, peptides and inorganic ions. The members are predicted to have a similar function to an active transport system for short chain amides and urea by sequence comparison and phylogenetic analysis. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus may also be involved in transport of amino acids.
Probab=59.15 E-value=36 Score=26.87 Aligned_cols=48 Identities=13% Similarity=0.176 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHhcccCCCceEeeEEecCCCChHHHHHHHHHHHhc
Q psy9174 76 GIQALETMLYTIDRINAELTMNLTLGAHVLDDCDQDTHGLEMAVDFIKG 124 (127)
Q Consensus 76 ~~q~~lAmiFAIeEIN~~LLPNITLGy~I~DsC~~~~~al~~~l~~lsg 124 (127)
+-....++..|+|+||. -..+-++-+.++|+..++..+.+.+-+++..
T Consensus 17 g~~~~~g~~la~~~iNg-gi~G~~v~l~~~D~~~~p~~a~~~~~~l~~~ 64 (334)
T cd06327 17 GKGSVEAAELAVEDFGG-GVLGRPIELVVADHQNKADVAAAKAREWIDR 64 (334)
T ss_pred CHHHHHHHHHHHHHhcC-CccCeEEEEEEecCCCCchHHHHHHHHHHhh
Confidence 44556789999999994 3457789999999999999999998888764
No 61
>TIGR03407 urea_ABC_UrtA urea ABC transporter, urea binding protein. Members of this protein family are ABC transporter substrate-binding proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. Members of this protein family tend to have the twin-arginine signal for Sec-independent transport across the plasma membrane.
Probab=55.57 E-value=74 Score=25.66 Aligned_cols=63 Identities=22% Similarity=0.190 Sum_probs=45.6
Q ss_pred EEEEEEEEeecccCCccccccCchhHHHHHHHHHHHHHHHhc--ccCCCceEeeEEecCCCChHHHHHHHHHHHh
Q psy9174 51 VLLGGLMMIHSRSESSVCGPIMAQGGIQALETMLYTIDRINA--ELTMNLTLGAHVLDDCDQDTHGLEMAVDFIK 123 (127)
Q Consensus 51 v~IGglFplh~~~~~~~C~~~~~~~~~q~~lAmiFAIeEIN~--~LLPNITLGy~I~DsC~~~~~al~~~l~~ls 123 (127)
|.||.+.|+.=. ....+-....++--|+++||+ =++ +-.+=+.++|+-.++..|.+.+=.++.
T Consensus 1 I~IG~l~plsG~---------~a~~g~~~~~g~~lav~~iN~~GGi~-G~~i~l~~~Dd~~~p~~a~~~a~~Lv~ 65 (359)
T TIGR03407 1 IKVGILHSLSGT---------MAISETTLKDAELMAIEEINASGGVL-GKKIEPVVEDGASDWPTFAEKARKLIT 65 (359)
T ss_pred CeEEEEeCCCCc---------hhhcchhHHHHHHHHHHHHHhcCCCC-CcEEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 457777765411 112233344688899999998 343 778888999999999999988888875
No 62
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=54.75 E-value=42 Score=27.21 Aligned_cols=51 Identities=16% Similarity=-0.009 Sum_probs=40.8
Q ss_pred hhHHHHHHHHHHHHHHHhc-ccCCCceEeeEEecCCCChHHHHHHHHHHHhc
Q psy9174 74 QGGIQALETMLYTIDRINA-ELTMNLTLGAHVLDDCDQDTHGLEMAVDFIKG 124 (127)
Q Consensus 74 ~~~~q~~lAmiFAIeEIN~-~LLPNITLGy~I~DsC~~~~~al~~~l~~lsg 124 (127)
..+-....++-.|+||||. -=..+..+=+-++|+.+++..+.+.+-.++..
T Consensus 14 ~~G~~~~~g~~la~~~iNa~GGI~Gr~ielv~~D~~~~p~~a~~~a~~Li~~ 65 (351)
T cd06334 14 FVGIPYAAGFADYFKYINEDGGINGVKLEWEECDTGYEVPRGVECYERLKGE 65 (351)
T ss_pred ccChhHHHHHHHHHHHHHHcCCcCCeEEEEEEecCCCCcHHHHHHHHHHhcc
Confidence 3455667789999999999 33357788888999999999999888777754
No 63
>cd06336 PBP1_ABC_ligand_binding_like_3 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=53.51 E-value=48 Score=26.47 Aligned_cols=49 Identities=16% Similarity=0.207 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHhc--ccC-CC--ceEeeEEecCCCChHHHHHHHHHHHhc
Q psy9174 76 GIQALETMLYTIDRINA--ELT-MN--LTLGAHVLDDCDQDTHGLEMAVDFIKG 124 (127)
Q Consensus 76 ~~q~~lAmiFAIeEIN~--~LL-PN--ITLGy~I~DsC~~~~~al~~~l~~lsg 124 (127)
+-+...++..|+|+||+ -++ .+ .++=+.++|+..++..+.+.+-.++..
T Consensus 16 g~~~~~g~~lA~~~iN~~GGi~~~G~~~~iel~~~D~~~~p~~a~~~~~~li~~ 69 (347)
T cd06336 16 GLPGLRGVQLAAEEINAAGGIKVGGKKYKVEIVSYDDKYDPAEAAANARRLVQQ 69 (347)
T ss_pred ChhhHHHHHHHHHHHHhcCCcccCCceeeEEEEEecCCCCHHHHHHHHHHHHhh
Confidence 44455688899999998 444 55 578899999999999998888887753
No 64
>cd00914 PCD_DCoH_subfamily_b PCD_DCoH: The bifunctional protein pterin-4alpha-carbinolamine dehydratase (PCD), also known as DCoH (dimerization cofactor of hepatocyte nuclear factor-1), is both a transcription activator and a metabolic enzyme. DCoH stimulates gene expression by associating with specific DNA binding proteins such as HNF-1alpha (hepatocyte nuclear factor-1) and Xenopus enhancer of rudimentary homologue (XERH). DCoH also catalyzes the dehydration of 4alpha- hydroxy- tetrahydrobiopterin (4alpha-OH-BH4) to quinoiddihydrobiopterin, a percursor of the phenylalanine hydroxylase cofactor BH4 (tetrahydrobiopterin). The DCoH homodimer has a saddle-shaped structure similar to that of TBP (TATA binding protein). Two DCoH proteins have been identifed in humans: DCoH1 and DCoH2. Mutations in human DCoH1 cause hyperphenylalaninemia. Loss of enzymic activity of DCoH in humans is associated with the depigmentation disorder vitiligo. DCoH1 has been reported to be overexpessed in colon
Probab=52.58 E-value=17 Score=23.69 Aligned_cols=34 Identities=0% Similarity=-0.192 Sum_probs=29.2
Q ss_pred CchhHHHHHHHHHHHHHHHhc--ccCCCceEeeEEe
Q psy9174 72 MAQGGIQALETMLYTIDRINA--ELTMNLTLGAHVL 105 (127)
Q Consensus 72 ~~~~~~q~~lAmiFAIeEIN~--~LLPNITLGy~I~ 105 (127)
+..++|....+++-+|.++-+ ..=|+|++||.-.
T Consensus 15 f~f~~f~~a~~f~~~va~~ae~~~HHPdi~~~~~~V 50 (76)
T cd00914 15 FKFKDFNEAFGFMTRVALEAEKMNHHPEWFNVYNKV 50 (76)
T ss_pred EEeCCHHHHHHHHHHHHHHHHHhCCCCCEEEeccEE
Confidence 466789999999999999988 8889999999753
No 65
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A ....
Probab=52.12 E-value=1.1e+02 Score=23.87 Aligned_cols=64 Identities=22% Similarity=0.247 Sum_probs=45.1
Q ss_pred EEEEEEEEeecccCCccccccCchhHHHHHHHHHHHHHHHhc-ccCCCceEeeEEecCCCChHHHHHHHHHHHh
Q psy9174 51 VLLGGLMMIHSRSESSVCGPIMAQGGIQALETMLYTIDRINA-ELTMNLTLGAHVLDDCDQDTHGLEMAVDFIK 123 (127)
Q Consensus 51 v~IGglFplh~~~~~~~C~~~~~~~~~q~~lAmiFAIeEIN~-~LLPNITLGy~I~DsC~~~~~al~~~l~~ls 123 (127)
+.||.+.|..-. ....+-....++..|++++|+ -=..+..+-+.++|+-.+...+.+.+-.++.
T Consensus 2 i~IG~~~~~sG~---------~a~~g~~~~~g~~~a~~~~N~~ggi~G~~i~l~~~D~~~~~~~a~~~~~~l~~ 66 (343)
T PF13458_consen 2 IKIGVLVPLSGP---------FAPYGQDFLRGAELAVDEINAAGGINGRKIELVVYDDGGDPAQAVQAARKLID 66 (343)
T ss_dssp EEEEEEE-SSST---------THHHHHHHHHHHHHHHHHHHHTTEETTEEEEEEEEE-TT-HHHHHHHHHHHHH
T ss_pred EEEEEEECCCCh---------hhhhhHHHHHHHHHHHHHHHHhCCcCCccceeeeccCCCChHHHHHHHHHhhh
Confidence 567777765421 223455667889999999999 3233899999999999999888887777765
No 66
>cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type I periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Probab=47.57 E-value=75 Score=25.45 Aligned_cols=48 Identities=21% Similarity=0.160 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHHHHHHhc--ccCCCceEeeEEecCCCChHHHHHHHHHHHh
Q psy9174 75 GGIQALETMLYTIDRINA--ELTMNLTLGAHVLDDCDQDTHGLEMAVDFIK 123 (127)
Q Consensus 75 ~~~q~~lAmiFAIeEIN~--~LLPNITLGy~I~DsC~~~~~al~~~l~~ls 123 (127)
.+-....++-.|+||||+ -++ +-++=+..+|+-.++..+.+.+-.++.
T Consensus 15 ~G~~~~~g~~la~~~iN~~GGi~-G~~ielv~~D~~~~p~~a~~~a~~Li~ 64 (348)
T cd06355 15 SETTLKDAELLAIEEINAAGGVL-GRKIEAVVEDGASDWPTFAEKARKLLT 64 (348)
T ss_pred cchhHHHHHHHHHHHHHhcCCCC-CcEEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 345566789999999998 444 677778899999999999999888875
No 67
>TIGR03669 urea_ABC_arch urea ABC transporter, substrate-binding protein, archaeal type. Members of this protein family are identified as the substrate-binding protein of a urea ABC transport system by similarity to a known urea transporter from Corynebacterium glutamicum, operon structure, proximity of its operons to urease (urea-utilization protein) operons, and by Partial Phylogenetic Profiling vs. urea utilization.
Probab=47.52 E-value=1.1e+02 Score=25.28 Aligned_cols=47 Identities=13% Similarity=0.148 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHhc--ccCCCceEeeEEecCCCChHHHHHHHHHHHh
Q psy9174 76 GIQALETMLYTIDRINA--ELTMNLTLGAHVLDDCDQDTHGLEMAVDFIK 123 (127)
Q Consensus 76 ~~q~~lAmiFAIeEIN~--~LLPNITLGy~I~DsC~~~~~al~~~l~~ls 123 (127)
+-....++-.|+||||. -++ +-++=+.++|+-.++..|.+.+-.++.
T Consensus 17 G~~~~~G~~lAv~~iNa~GGi~-Gr~ielv~~D~~~~p~~a~~~a~~li~ 65 (374)
T TIGR03669 17 GTPKWHASQLAIEEINKSGGIL-GRQIELIDPDPQSDNERYQELTRRLLN 65 (374)
T ss_pred cHHHHHHHHHHHHHHHhcCCCC-CceeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 34455778899999998 444 667777889999999999988888875
No 68
>cd00488 PCD_DCoH PCD_DCoH: The bifunctional protein pterin-4alpha-carbinolamine dehydratase (PCD), also known as DCoH (dimerization cofactor of hepatocyte nuclear factor-1), is both a transcription activator and a metabolic enzyme. DCoH stimulates gene expression by associating with specific DNA binding proteins such as HNF-1alpha (hepatocyte nuclear factor-1) and Xenopus enhancer of rudimentary homologue (XERH). DCoH also catalyzes the dehydration of 4alpha- hydroxy- tetrahydrobiopterin (4alpha-OH-BH4) to quinoiddihydrobiopterin, a percursor of the phenylalanine hydroxylase cofactor BH4 (tetrahydrobiopterin). The DCoH homodimer has a saddle-shaped structure similar to that of TBP (TATA binding protein). Two DCoH proteins have been identifed in humans: DCoH1 and DCoH2. Mutations in human DCoH1 cause hyperphenylalaninemia. Loss of enzymic activity of DCoH in humans is associated with the depigmentation disorder vitiligo. DCoH1 has been reported to be overexpessed in colon cancer carc
Probab=39.63 E-value=44 Score=21.48 Aligned_cols=33 Identities=0% Similarity=-0.017 Sum_probs=28.1
Q ss_pred CchhHHHHHHHHHHHHHHHhc--ccCCCceEeeEE
Q psy9174 72 MAQGGIQALETMLYTIDRINA--ELTMNLTLGAHV 104 (127)
Q Consensus 72 ~~~~~~q~~lAmiFAIeEIN~--~LLPNITLGy~I 104 (127)
+..++|.....++-+|-++-. ..=|+++++|.-
T Consensus 14 f~f~~f~~a~~f~~~va~~ae~~~HHP~i~~~~~~ 48 (75)
T cd00488 14 FKFKDFKEAIAFVNRVAELAEALNHHPDISNVYNK 48 (75)
T ss_pred EEcCCHHHHHHHHHHHHHHHHHcCCCCCEEEeeeE
Confidence 466789999999999999888 888999999963
No 69
>TIGR03863 PQQ_ABC_bind ABC transporter, substrate binding protein, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are putative substrate-binding proteins of an ABC transporter family that associates, in gene neighborhood and phylogenomic profile, with pyrroloquinoline-quinone (PQQ)-dependent degradation of certain alcohols, such as 2-phenylethanol in Pseudomonas putida U.
Probab=38.87 E-value=1.1e+02 Score=25.23 Aligned_cols=46 Identities=9% Similarity=0.038 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHhc--ccCCCceEeeEEecCCCChHHHHHHHHHHHhc
Q psy9174 77 IQALETMLYTIDRINA--ELTMNLTLGAHVLDDCDQDTHGLEMAVDFIKG 124 (127)
Q Consensus 77 ~q~~lAmiFAIeEIN~--~LLPNITLGy~I~DsC~~~~~al~~~l~~lsg 124 (127)
=+...++-.||||||. -++ +..+=....|. .++..+...+-.++..
T Consensus 11 ~~~~~ga~lAveeiNaaGGv~-G~~ielv~~D~-~~p~~a~~~a~~Li~~ 58 (347)
T TIGR03863 11 DRGLDGARLAIEDNNTTGRFL-GQTFTLDEVAV-RTPEDLVAALKALLAQ 58 (347)
T ss_pred chHHHHHHHHHHHHHhhCCcC-CceEEEEEccC-CCHHHHHHHHHHHHHC
Confidence 3455678999999997 454 44444455676 4677787777776653
No 70
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=37.65 E-value=1.1e+02 Score=24.28 Aligned_cols=49 Identities=24% Similarity=0.261 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHhc-ccCCCceEeeEEecCCCChHHHHHHHHHHHhc
Q psy9174 76 GIQALETMLYTIDRINA-ELTMNLTLGAHVLDDCDQDTHGLEMAVDFIKG 124 (127)
Q Consensus 76 ~~q~~lAmiFAIeEIN~-~LLPNITLGy~I~DsC~~~~~al~~~l~~lsg 124 (127)
+-....++-.|+|+||. -=..+..+=+.++|+-.++..|.+.+-.++..
T Consensus 16 g~~~~~g~~la~~~iN~~gGi~G~~i~lv~~D~~~~p~~a~~~a~~Li~~ 65 (347)
T cd06335 16 GVSIRRGARLAIDEINAAGGVLGRKLELVERDDRGNPARGLQNAQELAAD 65 (347)
T ss_pred cHHHHHHHHHHHHHHHhcCCcCCeEEEEEeccCCCCcHHHHHHHHHHhcc
Confidence 34456778889999999 44467788889999999999999888888753
No 71
>cd00913 PCD_DCoH_subfamily_a PCD_DCoH: The bifunctional protein pterin-4alpha-carbinolamine dehydratase (PCD), also known as DCoH (dimerization cofactor of hepatocyte nuclear factor-1), is both a transcription activator and a metabolic enzyme. DCoH stimulates gene expression by associating with specific DNA binding proteins such as HNF-1alpha (hepatocyte nuclear factor-1) and Xenopus enhancer of rudimentary homologue (XERH). DCoH also catalyzes the dehydration of 4alpha- hydroxy- tetrahydrobiopterin (4alpha-OH-BH4) to quinoiddihydrobiopterin, a percursor of the phenylalanine hydroxylase cofactor BH4 (tetrahydrobiopterin). The DCoH homodimer has a saddle-shaped structure similar to that of TBP (TATA binding protein).
Probab=36.70 E-value=44 Score=21.62 Aligned_cols=32 Identities=13% Similarity=0.116 Sum_probs=27.5
Q ss_pred CchhHHHHHHHHHHHHHHHhc--ccCCCceEeeE
Q psy9174 72 MAQGGIQALETMLYTIDRINA--ELTMNLTLGAH 103 (127)
Q Consensus 72 ~~~~~~q~~lAmiFAIeEIN~--~LLPNITLGy~ 103 (127)
+..++|....+++-+|.++-+ ..=|+|++||.
T Consensus 15 f~f~~f~~a~~f~~~va~~ae~~~HHP~i~~~~~ 48 (76)
T cd00913 15 FRFKNFVEALEFVNAVGEIAEAEGHHPDLSLGWG 48 (76)
T ss_pred EEcCCHHHHHHHHHHHHHHHHHcCCCCCEEEecc
Confidence 456789999999999999887 88899999996
No 72
>KOG3297|consensus
Probab=35.13 E-value=28 Score=27.34 Aligned_cols=24 Identities=25% Similarity=0.243 Sum_probs=19.3
Q ss_pred HHH-HHHhc----ccCCCceEeeEEecCC
Q psy9174 85 YTI-DRINA----ELTMNLTLGAHVLDDC 108 (127)
Q Consensus 85 FAI-eEIN~----~LLPNITLGy~I~DsC 108 (127)
=|| ||+|| .+|||+.|..-+||.-
T Consensus 24 ~ai~~eL~~k~anKvl~nvGLCI~vyDi~ 52 (202)
T KOG3297|consen 24 DAIKEELNRKLANKVLPNVGLCICVYDIL 52 (202)
T ss_pred HHHHHHHHHHHHhhhcccccEEEEEeEee
Confidence 344 56888 8999999999999853
No 73
>cd06367 PBP1_iGluR_NMDA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. The function of the NMDA subtype receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer comprising two NR1 and two NR2 (A, B, C, and D) or NR3 (A and B) subunits
Probab=34.34 E-value=88 Score=25.04 Aligned_cols=43 Identities=19% Similarity=0.175 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhc--ccCCCceEeeEEecCCCChHHHHHHHHHHHh
Q psy9174 81 ETMLYTIDRINA--ELTMNLTLGAHVLDDCDQDTHGLEMAVDFIK 123 (127)
Q Consensus 81 lAmiFAIeEIN~--~LLPNITLGy~I~DsC~~~~~al~~~l~~ls 123 (127)
.++-+||..+|+ .+.+|+++-..+.|+-.++..+.+.+.+.+.
T Consensus 16 ~~~~~a~~~~~~~~~~~~~~~~~l~~~d~~~d~~~~~~~~~~~l~ 60 (362)
T cd06367 16 PAFRDAVTAANFRHNLPYNLSLEAVAVSNDTDPISLLLSVCDLLV 60 (362)
T ss_pred hhHHHHhhhccccccCCcccceEEEEEecCCCHHHHHHHHHHHhc
Confidence 678899999999 6778999999999888888888888887775
No 74
>PF12407 Abdominal-A: Homeobox protein ; InterPro: IPR022132 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00046 from PFAM. This family is a homeobox protein involved in differentiation of embryonic cells to form the abdominal region.
Probab=34.11 E-value=22 Score=18.65 Aligned_cols=8 Identities=25% Similarity=0.443 Sum_probs=6.8
Q ss_pred HHHHHHhc
Q psy9174 85 YTIDRINA 92 (127)
Q Consensus 85 FAIeEIN~ 92 (127)
-||.|||.
T Consensus 3 ravkeine 10 (24)
T PF12407_consen 3 RAVKEINE 10 (24)
T ss_pred hHHHHHHH
Confidence 48999997
No 75
>COG0683 LivK ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]
Probab=31.11 E-value=2.8e+02 Score=22.54 Aligned_cols=64 Identities=19% Similarity=0.202 Sum_probs=46.3
Q ss_pred CEEEEEEEEeecccCCccccccCchhHHHHHHHHHHHHHHHhc--ccCCCceEeeEEecCCCChHHHHHHHHHHHh
Q psy9174 50 DVLLGGLMMIHSRSESSVCGPIMAQGGIQALETMLYTIDRINA--ELTMNLTLGAHVLDDCDQDTHGLEMAVDFIK 123 (127)
Q Consensus 50 Dv~IGglFplh~~~~~~~C~~~~~~~~~q~~lAmiFAIeEIN~--~LLPNITLGy~I~DsC~~~~~al~~~l~~ls 123 (127)
+|.||-+.|+.= . .-..+-+...+.-.|+||||+ -++-.- +=.-+.|+-+++..+.+.+-.++.
T Consensus 10 ~IkIGv~~plsG-----~----~A~~G~~~~~ga~lAv~~iNa~Ggi~G~~-velv~~D~~~dp~~a~~~A~~li~ 75 (366)
T COG0683 10 TIKIGVVLPLSG-----P----AAAYGQQIKNGAELAVEEINAAGGILGRK-VELVVEDDASDPATAAAVARKLIT 75 (366)
T ss_pred ceEEEEEecCCc-----h----hhhhChHHHHHHHHHHHHHhhhCCcCCce-EEEEEecCCCChHHHHHHHHHHHh
Confidence 699999998731 1 233456677788899999999 754442 555788987888878888777665
No 76
>cd06358 PBP1_NHase Type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides. This group includes the type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides, which are subsequently converted by amidases to yield free carboxylic acids and ammonia. NHases from bacteria and fungi have been purified and characterized. In Rhodococcus sp., the nitrile hydratase operon consists of six genes encoding NHase regulator 2, NHase regulator 1, amidase, NHase alpha subunit, NHase beta subunit, and NHase activator. The operon produces a constitutive hydratase that has a broad substrate spectrum: aliphatic and aromatic nitriles, mononitriles and dinitriles, hydroxynitriles and amino-nitriles, and a constitutive amidase of equally low substrate specificity. NHases are metalloenzymes containing either cobalt or iron, and therefore can be classified int
Probab=31.08 E-value=2.3e+02 Score=22.27 Aligned_cols=46 Identities=13% Similarity=0.170 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHhc-ccCCCceEeeEEecCCCChHHHHHHHHHHHhc
Q psy9174 79 ALETMLYTIDRINA-ELTMNLTLGAHVLDDCDQDTHGLEMAVDFIKG 124 (127)
Q Consensus 79 ~~lAmiFAIeEIN~-~LLPNITLGy~I~DsC~~~~~al~~~l~~lsg 124 (127)
...++-.|+++||. -=.-+.++=+..+|+.+++..+.+.+-.++..
T Consensus 19 ~~~g~~la~~~iN~~gGi~G~~i~l~~~D~~~~p~~a~~~a~~Li~~ 65 (333)
T cd06358 19 CEAAAELAVEEINAAGGILGREVELVIVDDGSPPAEAAAAAARLVDE 65 (333)
T ss_pred HHHHHHHHHHHHHhcCCcCCcEEEEEEECCCCChHHHHHHHHHHHHh
Confidence 34578889999998 33356778888999999999999888877754
No 77
>cd06356 PBP1_Amide_Urea_BP_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the type I periplasmic-binding proteins that are predicted to have a function similar to that of an active transport system for short chain amides and/or urea in bacteria and Archaea, by sequence comparison and phylogenetic analysis.
Probab=29.33 E-value=2.3e+02 Score=22.39 Aligned_cols=49 Identities=14% Similarity=0.091 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHHHHHHhc-ccCCCceEeeEEecCCCChHHHHHHHHHHHh
Q psy9174 75 GGIQALETMLYTIDRINA-ELTMNLTLGAHVLDDCDQDTHGLEMAVDFIK 123 (127)
Q Consensus 75 ~~~q~~lAmiFAIeEIN~-~LLPNITLGy~I~DsC~~~~~al~~~l~~ls 123 (127)
.+-....++-.|+||||+ -=..+-++=+-++|+-.++..+.+.+-+++.
T Consensus 15 ~G~~~~~g~~la~~~iNa~gGi~Gr~v~lv~~D~~~~p~~a~~~~~~Li~ 64 (334)
T cd06356 15 YGTPKVHATQLAVDEINASGGILGREVELVDYDTQSDNERYQQYAQRLAL 64 (334)
T ss_pred ccHHHHHHHHHHHHHHHhcCCCCCceEEEEEECCCCCHHHHHHHHHHHHH
Confidence 344555778899999998 4445778888899999999999888888775
No 78
>KOG4513|consensus
Probab=27.76 E-value=78 Score=27.87 Aligned_cols=38 Identities=21% Similarity=0.395 Sum_probs=31.0
Q ss_pred hhHHHHHHHHHHHHHHH-hc-----------ccCCCceEeeEEecCCCChHHHHHHHHHHHh
Q psy9174 74 QGGIQALETMLYTIDRI-NA-----------ELTMNLTLGAHVLDDCDQDTHGLEMAVDFIK 123 (127)
Q Consensus 74 ~~~~q~~lAmiFAIeEI-N~-----------~LLPNITLGy~I~DsC~~~~~al~~~l~~ls 123 (127)
...+.+++|++-|++|- |+ +-+||.++|| +++.+.+|.
T Consensus 137 HShidhl~allka~~erg~~ei~vH~~tDGRDt~p~s~vgf------------Le~~l~fLr 186 (531)
T KOG4513|consen 137 HSHIDHLQALLKALAERGAKEIRVHILTDGRDTLPGSSVGF------------LEADLDFLR 186 (531)
T ss_pred hhhHHHHHHHHHHHHhcCCceEEEEEecCCccCCCCcchhh------------HHHHHHHHH
Confidence 45689999999999998 44 5679999998 677777775
No 79
>PRK00823 phhB pterin-4-alpha-carbinolamine dehydratase; Validated
Probab=24.17 E-value=84 Score=21.28 Aligned_cols=33 Identities=3% Similarity=-0.069 Sum_probs=27.5
Q ss_pred CchhHHHHHHHHHHHHHHHhc--ccCCCceEeeEE
Q psy9174 72 MAQGGIQALETMLYTIDRINA--ELTMNLTLGAHV 104 (127)
Q Consensus 72 ~~~~~~q~~lAmiFAIeEIN~--~LLPNITLGy~I 104 (127)
+..++|....+++-+|-++-. +.=|+|+++|.-
T Consensus 34 f~f~~f~~a~~f~~~Va~~ae~~~HHP~i~~~~~~ 68 (97)
T PRK00823 34 FKFKNFNEAFAFMNRVAEIAEEEDHHPDWFNVYNR 68 (97)
T ss_pred EEeCCHHHHHHHHHHHHHHHHHcCCCCCEEEEcCE
Confidence 456778888899999999887 788999999863
No 80
>cd06357 PBP1_AmiC Periplasmic binding domain of amidase (AmiC) that belongs to the type I periplasmic binding fold protein family. This group includes the periplasmic binding domain of amidase (AmiC) that belongs to the type I periplasmic binding fold protein family. AmiC controls expression of the amidase operon by the ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon are induced.
Probab=21.80 E-value=3.7e+02 Score=21.54 Aligned_cols=48 Identities=17% Similarity=0.118 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHhc-ccCCCceEeeEEecCCCChHHHHHHHHHHHh
Q psy9174 76 GIQALETMLYTIDRINA-ELTMNLTLGAHVLDDCDQDTHGLEMAVDFIK 123 (127)
Q Consensus 76 ~~q~~lAmiFAIeEIN~-~LLPNITLGy~I~DsC~~~~~al~~~l~~ls 123 (127)
+-....++--|++|||+ -=..+-++=+.++|+-.++..|...+-.++.
T Consensus 16 g~~~~~g~~la~~~iN~~GGi~G~~ielv~~D~~~~p~~a~~~a~~li~ 64 (360)
T cd06357 16 ERSQRNGALLAIEEINAAGGVLGRELEPVEYDPGGDPDAYRALAERLLR 64 (360)
T ss_pred cHHHHHHHHHHHHHHhhcCCCCCeEEEEEEECCCCCHHHHHHHHHHHHh
Confidence 44445678889999999 3234567888899999999999998888875
Done!