Query psy9174
Match_columns 127
No_of_seqs 150 out of 978
Neff 5.9
Searched_HMMs 29240
Date Fri Aug 16 20:45:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9174.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9174hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ks9_A Mglur1, metabotropic gl 99.9 3.4E-22 1.2E-26 167.5 10.2 83 43-125 10-99 (496)
2 3sm9_A Mglur3, metabotropic gl 99.8 6.7E-20 2.3E-24 153.0 9.1 81 43-124 6-90 (479)
3 3mq4_A Mglur7, metabotropic gl 99.8 1.5E-18 5.2E-23 144.2 8.2 81 43-124 9-93 (481)
4 2e4u_A Metabotropic glutamate 99.6 4E-15 1.4E-19 125.4 9.5 82 43-124 7-91 (555)
5 1dp4_A Atrial natriuretic pept 98.9 2.6E-09 8.9E-14 85.6 7.9 66 49-123 1-74 (435)
6 4gpa_A Glutamate receptor 4; P 98.5 3.4E-07 1.2E-11 71.4 8.6 64 47-125 2-69 (389)
7 1jdp_A NPR-C, atrial natriuret 98.5 4.3E-07 1.5E-11 73.2 8.3 64 49-122 8-77 (441)
8 3o21_A Glutamate receptor 3; p 98.3 1.4E-06 4.7E-11 69.9 8.1 64 48-126 3-70 (389)
9 4f11_A Gamma-aminobutyric acid 98.1 1.2E-05 4.1E-10 64.4 8.9 70 48-124 12-82 (433)
10 3om0_A Glutamate receptor, ion 97.8 3.4E-05 1.2E-09 61.1 6.7 57 49-117 3-61 (393)
11 3h6g_A Glutamate receptor, ion 97.8 4.8E-05 1.6E-09 60.2 6.5 65 48-123 2-69 (395)
12 3kg2_A Glutamate receptor 2; I 97.2 0.00076 2.6E-08 58.2 7.1 58 49-124 1-59 (823)
13 3i45_A Twin-arginine transloca 96.0 0.028 9.7E-07 43.8 8.3 66 48-123 3-70 (387)
14 3eaf_A ABC transporter, substr 96.0 0.027 9.3E-07 44.1 8.2 65 49-122 3-72 (391)
15 3hsy_A Glutamate receptor 2; l 95.6 0.041 1.4E-06 43.2 7.7 59 50-126 2-61 (376)
16 3ipc_A ABC transporter, substr 95.6 0.074 2.5E-06 40.7 8.8 68 49-125 1-69 (356)
17 3qek_A NMDA glutamate receptor 95.4 0.04 1.4E-06 43.1 6.8 59 48-123 3-63 (384)
18 3h5l_A Putative branched-chain 95.2 0.11 3.8E-06 40.9 8.8 66 48-123 12-80 (419)
19 3n0x_A Possible substrate bind 94.9 0.11 3.8E-06 40.4 8.0 66 49-123 3-70 (374)
20 1usg_A Leucine-specific bindin 94.5 0.22 7.4E-06 37.7 8.7 67 50-125 2-69 (346)
21 3lkb_A Probable branched-chain 93.9 0.25 8.4E-06 38.4 8.0 66 49-124 6-73 (392)
22 3hut_A Putative branched-chain 93.6 0.35 1.2E-05 36.9 8.3 65 48-122 2-68 (358)
23 3saj_A Glutamate receptor 1; r 93.6 0.14 4.9E-06 40.1 6.1 60 47-126 7-68 (384)
24 3lop_A Substrate binding perip 92.1 0.66 2.3E-05 35.5 8.0 66 48-123 3-70 (364)
25 4gnr_A ABC transporter substra 91.9 0.93 3.2E-05 34.5 8.6 67 48-124 5-73 (353)
26 4eyg_A Twin-arginine transloca 91.8 0.8 2.7E-05 34.9 8.1 66 48-123 4-69 (368)
27 3td9_A Branched chain amino ac 91.7 0.69 2.4E-05 35.4 7.6 67 47-124 13-79 (366)
28 4evq_A Putative ABC transporte 88.7 1 3.5E-05 34.3 6.3 67 47-123 13-79 (375)
29 1pea_A Amidase operon; gene re 88.3 1.8 6.1E-05 33.5 7.5 66 48-123 5-72 (385)
30 3i09_A Periplasmic branched-ch 86.6 3.8 0.00013 31.3 8.4 65 49-123 3-68 (375)
31 3n0w_A ABC branched chain amin 86.3 2.8 9.7E-05 32.2 7.6 66 48-123 4-70 (379)
32 3snr_A Extracellular ligand-bi 58.9 7.6 0.00026 29.0 3.3 63 48-124 5-67 (362)
33 3sg0_A Extracellular ligand-bi 49.7 15 0.00053 27.6 3.7 63 48-124 25-87 (386)
34 4f06_A Extracellular ligand-bi 49.1 84 0.0029 23.8 8.1 63 51-123 6-69 (371)
35 3lqv_P Splicing factor 3B subu 39.1 38 0.0013 19.1 3.3 20 82-104 11-38 (39)
No 1
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A*
Probab=99.87 E-value=3.4e-22 Score=167.50 Aligned_cols=83 Identities=39% Similarity=0.676 Sum_probs=72.2
Q ss_pred CCcccCCCEEEEEEEEeecccC-----CccccccCchhHHHHHHHHHHHHHHHhc--ccCCCceEeeEEecCCCChHHHH
Q psy9174 43 YSAEISGDVLLGGLMMIHSRSE-----SSVCGPIMAQGGIQALETMLYTIDRINA--ELTMNLTLGAHVLDDCDQDTHGL 115 (127)
Q Consensus 43 ~~~~~~GDv~IGglFplh~~~~-----~~~C~~~~~~~~~q~~lAmiFAIeEIN~--~LLPNITLGy~I~DsC~~~~~al 115 (127)
..++++||++|||+||+|.... ...|.++...++||+++||.|||||||+ .||||+||||+|+|+|+++.+|+
T Consensus 10 ~~~~~~GDi~iGglf~vh~~~~~~~~~~~~c~~~~~~~g~~~~~a~~~AieeIN~~~~lLpn~tLg~~i~D~~~~~~~a~ 89 (496)
T 3ks9_A 10 SVARMDGDVIIGALFSVHHQPPAEKVPERKCGEIREQYGIQRVEAMFHTLDKINADPVLLPNITLGSEIRDSCWHSSVAL 89 (496)
T ss_dssp CCEEECCSEEEEEEECSBCCCCGGGTTTTCCCCBCTTTTHHHHHHHHHHHHHHHTCSSSSTTCCEEEEEEECTTCHHHHH
T ss_pred cceecCCCEEEEEEEEeEEcCccCCCCCCCCccccchhhHHHHHHHHHHHHHHhCCCCCCCCceEeEEEEEcCCCcHHHH
Confidence 4578999999999999997532 2378753235789999999999999999 89999999999999999999999
Q ss_pred HHHHHHHhcc
Q psy9174 116 EMAVDFIKGR 125 (127)
Q Consensus 116 ~~~l~~lsg~ 125 (127)
++++.+++|.
T Consensus 90 ~~a~~ll~~~ 99 (496)
T 3ks9_A 90 EQSIEFIRDS 99 (496)
T ss_dssp HHHHHHHSTT
T ss_pred HHHHHHHHhh
Confidence 9999999654
No 2
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=99.80 E-value=6.7e-20 Score=152.98 Aligned_cols=81 Identities=41% Similarity=0.785 Sum_probs=72.8
Q ss_pred CCcccCCCEEEEEEEEeecccC-CccccccCch-hHHHHHHHHHHHHHHHhc--ccCCCceEeeEEecCCCChHHHHHHH
Q psy9174 43 YSAEISGDVLLGGLMMIHSRSE-SSVCGPIMAQ-GGIQALETMLYTIDRINA--ELTMNLTLGAHVLDDCDQDTHGLEMA 118 (127)
Q Consensus 43 ~~~~~~GDv~IGglFplh~~~~-~~~C~~~~~~-~~~q~~lAmiFAIeEIN~--~LLPNITLGy~I~DsC~~~~~al~~~ 118 (127)
..+.++||++|||+||+|.... ...|.. +.. ++||+++||.|||||||+ .||||+||||+++|+|+++..|++.+
T Consensus 6 ~~~~~~GDi~iGglf~l~~~~~~~~~C~~-~~~~~g~~~~~a~~~AieeIN~~~~lLpg~~L~~~i~D~~~~~~~a~~~~ 84 (479)
T 3sm9_A 6 REIKIEGDLVLGGLFPINEKGTGTEECGR-INEDRGIQRLEAMLFAIDEINKDDYLLPGVKLGVHILDTCSRDTYALEQS 84 (479)
T ss_dssp CCEEECCSEEEEEEECCEEECC-CCSEEE-ECTTTTHHHHHHHHHHHHHHHHCSSSSTTCCEEEEEEECTTCHHHHHHHH
T ss_pred cccccCCCEEEEEEEEeEECCCCCCCCcc-cchhhhHHHHHHHHHHHHHHhCCCccCCCCeEeEEEEecCCChHHHHHHH
Confidence 4578999999999999996543 346876 365 899999999999999999 99999999999999999999999999
Q ss_pred HHHHhc
Q psy9174 119 VDFIKG 124 (127)
Q Consensus 119 l~~lsg 124 (127)
+.++++
T Consensus 85 ~~ll~~ 90 (479)
T 3sm9_A 85 LEFVRA 90 (479)
T ss_dssp HHHHHT
T ss_pred HHHHhC
Confidence 999987
No 3
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99; 2.80A {Homo sapiens} SCOP: c.93.1.0 PDB: 2e4z_A*
Probab=99.75 E-value=1.5e-18 Score=144.25 Aligned_cols=81 Identities=46% Similarity=0.827 Sum_probs=70.3
Q ss_pred CCcccCCCEEEEEEEEeeccc-CCccccccCc-hhHHHHHHHHHHHHHHHhc--ccCCCceEeeEEecCCCChHHHHHHH
Q psy9174 43 YSAEISGDVLLGGLMMIHSRS-ESSVCGPIMA-QGGIQALETMLYTIDRINA--ELTMNLTLGAHVLDDCDQDTHGLEMA 118 (127)
Q Consensus 43 ~~~~~~GDv~IGglFplh~~~-~~~~C~~~~~-~~~~q~~lAmiFAIeEIN~--~LLPNITLGy~I~DsC~~~~~al~~~ 118 (127)
..+.++||++|||+||+|... ....|..+ . .++||+++||.|||||||+ .||||+||||+|+|+|+++..|++.+
T Consensus 9 ~~~~~~gdi~IG~lf~l~~~~~~~~~C~~~-~~~~g~~~~~a~~~AieeIN~~~~lLpn~~L~~~i~D~~~~~~~a~~~a 87 (481)
T 3mq4_A 9 HSIRIEGDVTLGGLFPVHAKGPSGVPCGDI-KRENGIHRLEAMLYALDQINSDPNLLPNVTLGARILDTCSRDTYALEQS 87 (481)
T ss_dssp CCEEECCSEEEEEEECSBCCC-----CCSB-CTTTTHHHHHHHHHHHHHHTTCSSSSSSCCEEEEEEECTTCHHHHHHHH
T ss_pred cccccCCCEEEEEEEEceeCCCCCCCCccc-cchhhHHHHHHHHHHHHHHhCCCCcCCCceEEEEEEeCCCChHHHHHHH
Confidence 357899999999999999654 34579763 4 5899999999999999999 99999999999999999999999999
Q ss_pred HHHHhc
Q psy9174 119 VDFIKG 124 (127)
Q Consensus 119 l~~lsg 124 (127)
+.++++
T Consensus 88 ~~ll~~ 93 (481)
T 3mq4_A 88 LTFVQA 93 (481)
T ss_dssp GGGGGG
T ss_pred HHHHhC
Confidence 999986
No 4
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=99.58 E-value=4e-15 Score=125.39 Aligned_cols=82 Identities=41% Similarity=0.768 Sum_probs=71.3
Q ss_pred CCcccCCCEEEEEEEEeeccc-CCccccccCchhHHHHHHHHHHHHHHHhc--ccCCCceEeeEEecCCCChHHHHHHHH
Q psy9174 43 YSAEISGDVLLGGLMMIHSRS-ESSVCGPIMAQGGIQALETMLYTIDRINA--ELTMNLTLGAHVLDDCDQDTHGLEMAV 119 (127)
Q Consensus 43 ~~~~~~GDv~IGglFplh~~~-~~~~C~~~~~~~~~q~~lAmiFAIeEIN~--~LLPNITLGy~I~DsC~~~~~al~~~l 119 (127)
..+..+||+.|||+||+|... ....|...+...++++.+||.|||||||+ .||||++|||+++|+|+++..|++.++
T Consensus 7 ~~~~~~g~i~IG~l~pl~g~~~~~~~C~~~~~~~g~~~~~a~~~AieeIN~~~~llpg~~L~~~i~D~~~~~~~a~~~a~ 86 (555)
T 2e4u_A 7 REIKIEGDLVLGGLFPINEKGTGTEECGRINEDRGIQRLEAMLFAIDEINKDNYLLPGVKLGVHILDTCSRDTYALEQSL 86 (555)
T ss_dssp CCEEECCSEEEEEEECCEEECCTTCSEEEECTTTTHHHHHHHHHHHHHHHHCTTSSTTCCEEEEEEECTTCHHHHHHHHH
T ss_pred cceecCCCEEEEEEEEeeECCCCCCccccccchhhhHHHHHHHHHHHHHhCCCCCCCCCeEEEEEEECCCChHHHHHHHH
Confidence 346789999999999999643 34578642357899999999999999999 899999999999999999999999999
Q ss_pred HHHhc
Q psy9174 120 DFIKG 124 (127)
Q Consensus 120 ~~lsg 124 (127)
.++++
T Consensus 87 ~~l~~ 91 (555)
T 2e4u_A 87 EFVRA 91 (555)
T ss_dssp HHHHT
T ss_pred HHHhC
Confidence 99874
No 5
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A*
Probab=98.92 E-value=2.6e-09 Score=85.61 Aligned_cols=66 Identities=15% Similarity=0.109 Sum_probs=55.7
Q ss_pred CCEEEEEEEEeecccCCccccccCchhHHHHHH-HHHHHHHHHhc--ccCCCceEeeEEecC-----CCChHHHHHHHHH
Q psy9174 49 GDVLLGGLMMIHSRSESSVCGPIMAQGGIQALE-TMLYTIDRINA--ELTMNLTLGAHVLDD-----CDQDTHGLEMAVD 120 (127)
Q Consensus 49 GDv~IGglFplh~~~~~~~C~~~~~~~~~q~~l-AmiFAIeEIN~--~LLPNITLGy~I~Ds-----C~~~~~al~~~l~ 120 (127)
||+.||+++|++-. ....+++..+ ||.+||||||+ .+|||.+|++.++|+ ++++..|...+.+
T Consensus 1 g~i~IG~l~p~sg~---------~~~~g~~~~~~a~~~Av~~iN~~ggil~g~~l~~~~~D~~~~p~~c~~~~a~~~a~~ 71 (435)
T 1dp4_A 1 SDLTVAVVLPLTNT---------SYPWSWARVGPAVELALARVKARPDLLPGWTVRMVLGSSENAAGVCSDTAAPLAAVD 71 (435)
T ss_dssp CEEEEEEEECSSCC---------CSTTCHHHHHHHHHHHHHHHHTCTTSSTTCEEEEEEEECBCTTSSBCTTHHHHHHHH
T ss_pred CceEEEEEccCcCC---------CCceeHHHHHHHHHHHHHHHHhCCCCCCCceEEEEEecCcCcccccchhhHHHHHHH
Confidence 79999999998742 1345788999 99999999999 799999999999999 4555578888888
Q ss_pred HHh
Q psy9174 121 FIK 123 (127)
Q Consensus 121 ~ls 123 (127)
++.
T Consensus 72 ~l~ 74 (435)
T 1dp4_A 72 LKW 74 (435)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 6
>4gpa_A Glutamate receptor 4; PBP fold, ligand-gated ION channel, ION transport, transmembrane AMPA receptor regulating proteins, cornichons, ckamp44; HET: NAG; 2.25A {Rattus norvegicus}
Probab=98.53 E-value=3.4e-07 Score=71.44 Aligned_cols=64 Identities=16% Similarity=0.106 Sum_probs=48.2
Q ss_pred cCCCEEEEEEEEeecccCCccccccCchhHHHHHHHHHHHHHHHhc--ccC-CCceEeeEEecCCCChH-HHHHHHHHHH
Q psy9174 47 ISGDVLLGGLMMIHSRSESSVCGPIMAQGGIQALETMLYTIDRINA--ELT-MNLTLGAHVLDDCDQDT-HGLEMAVDFI 122 (127)
Q Consensus 47 ~~GDv~IGglFplh~~~~~~~C~~~~~~~~~q~~lAmiFAIeEIN~--~LL-PNITLGy~I~DsC~~~~-~al~~~l~~l 122 (127)
.|..|.|||+||.+ +.+...||.+||||||+ .+| ||++|++++.|+|.+.. .+.+.+..++
T Consensus 2 ~P~~I~IG~lf~~~---------------~~~~~~a~~~Av~~iN~~~~ilg~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 66 (389)
T 4gpa_A 2 FPSSVQIGGLFIRN---------------TDQEYTAFRLAIFLHNTSPNASEAPFNLVPHVDNIETANSFAVTNAFCSQY 66 (389)
T ss_dssp CCSEEEEEEEECTT---------------CHHHHHHHHHHHHHHHTCSCTTTCSSEEEEEEEECSSCCHHHHHHHHHHHH
T ss_pred CCCeEEEEEEEcCC---------------ChHHHHHHHHHHHHHHhCCCCCCCCEEEEEEEecCCCchHHHHHHHHHHHH
Confidence 46789999999632 23556799999999999 677 99999999999876654 4555554555
Q ss_pred hcc
Q psy9174 123 KGR 125 (127)
Q Consensus 123 sg~ 125 (127)
+..
T Consensus 67 ~~~ 69 (389)
T 4gpa_A 67 SRG 69 (389)
T ss_dssp HTT
T ss_pred hcC
Confidence 543
No 7
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*
Probab=98.48 E-value=4.3e-07 Score=73.22 Aligned_cols=64 Identities=11% Similarity=0.032 Sum_probs=50.4
Q ss_pred CCEEEEEEEEeecccCCccccccCchhHHHHHHHHHHHHHHHhc--c----cCCCceEeeEEecCCCChHHHHHHHHHHH
Q psy9174 49 GDVLLGGLMMIHSRSESSVCGPIMAQGGIQALETMLYTIDRINA--E----LTMNLTLGAHVLDDCDQDTHGLEMAVDFI 122 (127)
Q Consensus 49 GDv~IGglFplh~~~~~~~C~~~~~~~~~q~~lAmiFAIeEIN~--~----LLPNITLGy~I~DsC~~~~~al~~~l~~l 122 (127)
..+.||.++|+.-. ....+.+...|+.+||||||+ . +|||++|+++++|+|+++. |++..++.+
T Consensus 8 ~~i~IG~~~p~sg~---------~~~~g~~~~~a~~~Av~eiN~~~~~~~~ll~g~~l~~~~~D~~~~~~-a~~~~~~~~ 77 (441)
T 1jdp_A 8 QKIEVLVLLPQDDS---------YLFSLTRVRPAIEYALRSVEGNGTGRRLLPPGTRFQVAYEDSDCGNR-ALFSLVDRV 77 (441)
T ss_dssp CEEEEEEEECSSTT---------STTCHHHHHHHHHHHHHHHCC-----CCSCTTCEEEEEEEECTTSTH-HHHHHHHHH
T ss_pred CceEEEEEcCCCCC---------cccchhhhHHHHHHHHHHHHhCCCcccccCCCcEEEEEEecCCCchh-HHHHHHHHH
Confidence 46899999997531 122345677899999999999 5 9999999999999999988 877666544
No 8
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=98.34 E-value=1.4e-06 Score=69.91 Aligned_cols=64 Identities=16% Similarity=0.166 Sum_probs=52.6
Q ss_pred CCCEEEEEEEEeecccCCccccccCchhHHHHHHHHHHHHHHHhc--cc-CCCceEeeEEecCCC-ChHHHHHHHHHHHh
Q psy9174 48 SGDVLLGGLMMIHSRSESSVCGPIMAQGGIQALETMLYTIDRINA--EL-TMNLTLGAHVLDDCD-QDTHGLEMAVDFIK 123 (127)
Q Consensus 48 ~GDv~IGglFplh~~~~~~~C~~~~~~~~~q~~lAmiFAIeEIN~--~L-LPNITLGy~I~DsC~-~~~~al~~~l~~ls 123 (127)
+..+.||++||+.- . ....||.+||||||+ .+ |||.+|++.++|+++ ++..|.+.+..+++
T Consensus 3 ~~~i~IG~i~~~sg------------~---~~~~a~~lAv~eiN~~g~ill~g~~l~~~~~D~~~~d~~~a~~~a~~li~ 67 (389)
T 3o21_A 3 PNTISIGGLFMRNT------------V---QEHSAFRFAVQLYNTNQNTTEKPFHLNYHVDHLDSSNSFSVTNAFCSQFS 67 (389)
T ss_dssp CSEEEEEEEECTTC------------H---HHHHHHHHHHHHHHSCCCTTTCSSEEEEEEEECCTTCHHHHHHHHHHHHT
T ss_pred CceeEEEEEeCCCC------------H---HHHHHHHHHHHHHhcCccccCCCcEEEEEEEecCCCChHHHHHHHHHHHh
Confidence 45688999997431 1 566799999999999 67 799999999999965 88899999988886
Q ss_pred ccC
Q psy9174 124 GRV 126 (127)
Q Consensus 124 g~~ 126 (127)
..|
T Consensus 68 ~~V 70 (389)
T 3o21_A 68 RGV 70 (389)
T ss_dssp TTC
T ss_pred cCc
Confidence 543
No 9
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*
Probab=98.11 E-value=1.2e-05 Score=64.42 Aligned_cols=70 Identities=23% Similarity=0.224 Sum_probs=57.9
Q ss_pred CCCEEEEEEEEeecccCCccccccCchhHHHHHHHHHHHHHHHhc-ccCCCceEeeEEecCCCChHHHHHHHHHHHhc
Q psy9174 48 SGDVLLGGLMMIHSRSESSVCGPIMAQGGIQALETMLYTIDRINA-ELTMNLTLGAHVLDDCDQDTHGLEMAVDFIKG 124 (127)
Q Consensus 48 ~GDv~IGglFplh~~~~~~~C~~~~~~~~~q~~lAmiFAIeEIN~-~LLPNITLGy~I~DsC~~~~~al~~~l~~lsg 124 (127)
...+.||.++|+.-... ....+-....++.+||||||+ .+|||.+|++.++|+|+++..|++.+..++..
T Consensus 12 ~~~i~IG~~~plsG~~a-------~~~~g~~~~~~~~lAv~~iN~~g~l~g~~l~l~~~D~~~~~~~a~~~a~~li~~ 82 (433)
T 4f11_A 12 SPPLSIMGLMPLTKEVA-------KGSIGRGVLPAVELAIEQIRNESLLRPYFLDLRLYDTECDNAKGLKAFYDAIKY 82 (433)
T ss_dssp CCEEEEEEEECCCTTST-------THHHHHHHHHHHHHHHHHHHHTTTTTTCEEEEEEEECTTCHHHHHHHHHHHHHH
T ss_pred CCceEEEEEEEecCCCC-------CCccchhHHHHHHHHHHHHhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhc
Confidence 35699999998753210 014566788899999999999 89999999999999999999999999998863
No 10
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A
Probab=97.83 E-value=3.4e-05 Score=61.14 Aligned_cols=57 Identities=7% Similarity=0.082 Sum_probs=44.3
Q ss_pred CCEEEEEEEEeecccCCccccccCchhHHHHHHHHHHHHHHHhc--ccCCCceEeeEEecCCCChHHHHHH
Q psy9174 49 GDVLLGGLMMIHSRSESSVCGPIMAQGGIQALETMLYTIDRINA--ELTMNLTLGAHVLDDCDQDTHGLEM 117 (127)
Q Consensus 49 GDv~IGglFplh~~~~~~~C~~~~~~~~~q~~lAmiFAIeEIN~--~LLPNITLGy~I~DsC~~~~~al~~ 117 (127)
|-|.||+++|+... .+-....|+.+||||||+ .+|||.+|++.++|+|+++..+...
T Consensus 3 ~~ikIG~~~~~s~~------------~G~~~~~a~~lAv~eiN~~ggil~g~~l~~~~~D~~~~~~~~~~~ 61 (393)
T 3om0_A 3 SSLRMAAILDDQTV------------CGRGERLALALAREQINGIIEVPAKARVEVDIFELQRDSQYETTD 61 (393)
T ss_dssp CEEEEEEEECCCCS------------SCCCHHHHHHHHHHHHHHSCCSSCCCEEEEEEEECCSSCHHHHHH
T ss_pred cceeEEEEecCCCc------------ccHHHHHHHHHHHHHHhcCcccccCcEEEEEEEecCCCchhHHHH
Confidence 45889999986521 122345789999999998 8999999999999999987654433
No 11
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Probab=97.76 E-value=4.8e-05 Score=60.17 Aligned_cols=65 Identities=15% Similarity=0.069 Sum_probs=43.2
Q ss_pred CCCEEEEEEEEeecccCCccccccCchhHHHHHHHHHHHHHHHhc--ccCCCceEeeEEecCC-CChHHHHHHHHHHHh
Q psy9174 48 SGDVLLGGLMMIHSRSESSVCGPIMAQGGIQALETMLYTIDRINA--ELTMNLTLGAHVLDDC-DQDTHGLEMAVDFIK 123 (127)
Q Consensus 48 ~GDv~IGglFplh~~~~~~~C~~~~~~~~~q~~lAmiFAIeEIN~--~LLPNITLGy~I~DsC-~~~~~al~~~l~~ls 123 (127)
+..|.||++||..-. . .+-....|+.+||||||+ .+|||++|++++.|+- .+...+...+.+++.
T Consensus 2 ~~~i~IG~l~~~sg~----~-------~g~~~~~a~~lAv~eiN~~ggil~~~~l~~~~~~~~~~d~~~~~~~a~~l~~ 69 (395)
T 3h6g_A 2 THVLRFGGIFEYVES----G-------PMGAEELAFRFAVNTINRNRTLLPNTTLTYDTQKINLYDSFEASKKACDQLS 69 (395)
T ss_dssp CEEEEEEEEEEESSS----C-------SCCHHHHHHHHHHHHHHHCSSSSSSEEEEEEEEEEETTCHHHHHHHHHHHHH
T ss_pred CcceEEEEEecCCCc----c-------cchHHHHHHHHHHHHHhcCccccCCceEEEEEeecCCcChHHHHHHHHHhhh
Confidence 356899999997531 0 122345699999999999 8999999999994432 233333334444444
No 12
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=97.18 E-value=0.00076 Score=58.19 Aligned_cols=58 Identities=10% Similarity=0.072 Sum_probs=44.1
Q ss_pred CCEEEEEEEEeecccCCccccccCchhHHHHHHHHHHHHHHHhcccCCCceEeeEEecCCC-ChHHHHHHHHHHHhc
Q psy9174 49 GDVLLGGLMMIHSRSESSVCGPIMAQGGIQALETMLYTIDRINAELTMNLTLGAHVLDDCD-QDTHGLEMAVDFIKG 124 (127)
Q Consensus 49 GDv~IGglFplh~~~~~~~C~~~~~~~~~q~~lAmiFAIeEIN~~LLPNITLGy~I~DsC~-~~~~al~~~l~~lsg 124 (127)
+.+.||++||..- . +...|+.+||||||++- ++|++.++|+|+ ++..|.+.+-.+++.
T Consensus 1 ~~ikIG~l~~~tg-----------~----~~~~a~~lAveeiN~~~---~~l~~~~~D~~~~~~~~a~~~~~~l~~~ 59 (823)
T 3kg2_A 1 NSIQIGGLFPRGA-----------D----QEYSAFRVGMVQFSTSE---FRLTPHIDNLEVANSFAVTNAFCSQFSR 59 (823)
T ss_dssp CEEEEEEEEETTC-----------H----HHHHHHHHHHHHTCCSS---CEEEEEEEEECTTCHHHHHHHHHHHHHT
T ss_pred CcceEEEEeCCCC-----------h----HHHHHHHHHHHHHhcCC---eEEEEEEEEcCCCChHHHHHHHHHHHhc
Confidence 4588999997531 1 56789999999999932 999999999998 666666665555543
No 13
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=96.03 E-value=0.028 Score=43.84 Aligned_cols=66 Identities=14% Similarity=0.097 Sum_probs=52.8
Q ss_pred CCCEEEEEEEEeecccCCccccccCchhHHHHHHHHHHHHHHHhc--ccCCCceEeeEEecCCCChHHHHHHHHHHHh
Q psy9174 48 SGDVLLGGLMMIHSRSESSVCGPIMAQGGIQALETMLYTIDRINA--ELTMNLTLGAHVLDDCDQDTHGLEMAVDFIK 123 (127)
Q Consensus 48 ~GDv~IGglFplh~~~~~~~C~~~~~~~~~q~~lAmiFAIeEIN~--~LLPNITLGy~I~DsC~~~~~al~~~l~~ls 123 (127)
+..+.||.++|..-. . .-+-....++..|+||||+ -+++|.++.+.++|+++++..+.+.+-.++.
T Consensus 3 ~~~i~IG~~~p~sg~---------~-~~g~~~~~g~~~a~~~iN~~ggi~Gg~~i~l~~~D~~~~~~~~~~~~~~li~ 70 (387)
T 3i45_A 3 LEAIRIGEINSYSQI---------P-AFTLPYRNGWQLAVEQINAAGGLLGGRPLEVISRDDGGDPGKAVTAAQELLT 70 (387)
T ss_dssp CCCEEEEEEECTTTC---------H-HHHHHHHHHHHHHHHHHHHTTCBTTTBCEEEEEEECTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEEeecCCCc---------h-hhhHHHHHHHHHHHHHHHhcCCCCCCcceEEEEecCCCCHHHHHHHHHHHHH
Confidence 346889999875311 1 2234567899999999999 8888899999999999999999988888876
No 14
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=96.03 E-value=0.027 Score=44.10 Aligned_cols=65 Identities=14% Similarity=-0.027 Sum_probs=52.3
Q ss_pred CCEEEEEEEEeecccCCccccccCchhHHHHHHHHHHHHHHHhc--ccC-CCc--eEeeEEecCCCChHHHHHHHHHHH
Q psy9174 49 GDVLLGGLMMIHSRSESSVCGPIMAQGGIQALETMLYTIDRINA--ELT-MNL--TLGAHVLDDCDQDTHGLEMAVDFI 122 (127)
Q Consensus 49 GDv~IGglFplh~~~~~~~C~~~~~~~~~q~~lAmiFAIeEIN~--~LL-PNI--TLGy~I~DsC~~~~~al~~~l~~l 122 (127)
+.+.||.++|+.-. ....+-....++..|+||||+ -+| +|. ++.+.++|++.++..+.+.+-.++
T Consensus 3 ~~i~IG~~~p~sG~---------~a~~g~~~~~g~~~a~~~iN~~ggi~~~G~~~~l~l~~~D~~~~~~~a~~~~~~li 72 (391)
T 3eaf_A 3 LTINVGLLVDETGP---------TSDVGKGYSLGAELAFKYFNEKGIYTKDGVRVNINYIKRDYAYNPTTAEEYYREFR 72 (391)
T ss_dssp EEEEEEEEECSSST---------THHHHHHHHHHHHHHHHHHHHHCEECTTCCEEEEEEEEEECTTCHHHHHHHHHHHH
T ss_pred ccEEEEEEEcCCCc---------hhhhhHHHHHHHHHHHHHHHHcCCCccCCeEEEEEEEEeCCCCCHHHHHHHHHHHH
Confidence 45789999976421 123455677899999999999 555 999 999999999999999988888887
No 15
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A
Probab=95.62 E-value=0.041 Score=43.21 Aligned_cols=59 Identities=12% Similarity=0.115 Sum_probs=45.8
Q ss_pred CEEEEEEEEeecccCCccccccCchhHHHHHHHHHHHHHHHhcccCCCceEeeEEecC-CCChHHHHHHHHHHHhccC
Q psy9174 50 DVLLGGLMMIHSRSESSVCGPIMAQGGIQALETMLYTIDRINAELTMNLTLGAHVLDD-CDQDTHGLEMAVDFIKGRV 126 (127)
Q Consensus 50 Dv~IGglFplh~~~~~~~C~~~~~~~~~q~~lAmiFAIeEIN~~LLPNITLGy~I~Ds-C~~~~~al~~~l~~lsg~~ 126 (127)
-+-||++|+..- -....++..||||||+. +.+|.+.+.|+ |.++..|.+.+-.++...|
T Consensus 2 ~i~IG~i~~~sg---------------~~~~~~~~lAv~~iN~~---g~~l~~~~~d~~~~d~~~a~~~~~~li~~~V 61 (376)
T 3hsy_A 2 SIQIGGLFPRGA---------------DQEYSAFRVGMVQFSTS---EFRLTPHIDNLEVANSFAVTNAFCSQFSRGV 61 (376)
T ss_dssp EEEEEEEEETTC---------------HHHHHHHHHHHHHTCCS---SCEEEEEEEEECTTCHHHHHHHHHHHHHTTC
T ss_pred ceeEEEEeCCCC---------------HHHHHHHHHHHHHHhcC---CeEEEEEEeecCCCChHHHHHHHHHHHhcCc
Confidence 367999997431 12366899999999997 89999999995 6688888888877776543
No 16
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=95.56 E-value=0.074 Score=40.66 Aligned_cols=68 Identities=19% Similarity=0.124 Sum_probs=52.7
Q ss_pred CCEEEEEEEEeecccCCccccccCchhHHHHHHHHHHHHHHHhc-ccCCCceEeeEEecCCCChHHHHHHHHHHHhcc
Q psy9174 49 GDVLLGGLMMIHSRSESSVCGPIMAQGGIQALETMLYTIDRINA-ELTMNLTLGAHVLDDCDQDTHGLEMAVDFIKGR 125 (127)
Q Consensus 49 GDv~IGglFplh~~~~~~~C~~~~~~~~~q~~lAmiFAIeEIN~-~LLPNITLGy~I~DsC~~~~~al~~~l~~lsg~ 125 (127)
|.+.||.++|+.-. ....+-....++..|+||||+ -=++|.++-+.++|++.++..+.+.+-.++...
T Consensus 1 ~~i~IG~~~p~sg~---------~~~~g~~~~~g~~~a~~~iN~~ggi~G~~~~l~~~d~~~~~~~~~~~~~~l~~~~ 69 (356)
T 3ipc_A 1 MDVVIAVGAPLTGP---------NAAFGAQIQKGAEQAAKDINAAGGINGEQIKIVLGDDVSDPKQGISVANKFVADG 69 (356)
T ss_dssp CCEEEEEEECCSST---------THHHHHHHHHHHHHHHHHHHHTTCBTTBCEEEEEEECTTCHHHHHHHHHHHHHTT
T ss_pred CeEEEEEeeCCCCc---------chhhCHHHHHHHHHHHHHHHhcCCCCCeEEEEEEecCCCCHHHHHHHHHHHHHCC
Confidence 67899999975311 123345667899999999999 334899999999999999998888887777643
No 17
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*
Probab=95.38 E-value=0.04 Score=43.11 Aligned_cols=59 Identities=12% Similarity=0.148 Sum_probs=46.9
Q ss_pred CCCEEEEEEEEeecccCCccccccCchhHHHHHHHHHHHHHHHhc-ccCCCceEeeEEecCCCChHHHHHHHHH-HHh
Q psy9174 48 SGDVLLGGLMMIHSRSESSVCGPIMAQGGIQALETMLYTIDRINA-ELTMNLTLGAHVLDDCDQDTHGLEMAVD-FIK 123 (127)
Q Consensus 48 ~GDv~IGglFplh~~~~~~~C~~~~~~~~~q~~lAmiFAIeEIN~-~LLPNITLGy~I~DsC~~~~~al~~~l~-~ls 123 (127)
+.-+.||++||+. ....|+-.||||||+ ...++++|-+.+.|+.+++..+.+.+-+ ++.
T Consensus 3 ~~~i~IG~i~~~s-----------------~~~~~~~lAv~~iN~~~~~~~~~l~~~~~d~~~d~~~a~~~~~~~Li~ 63 (384)
T 3qek_A 3 PKIVNIGAVLSTK-----------------KHEQIFREAVNQANKRHFTRKIQLQATSVTHRPNAIQMALSVCEDLIS 63 (384)
T ss_dssp CEEEEEEEEESSH-----------------HHHHHHHHHHHHHHHHSCCSSEEEEEEEEECCSSHHHHHHHHHHHTGG
T ss_pred ceEEEEeEEeeCc-----------------hHHHHHHHHHHHHhccccCCceEEEEEEecccCCHHHHHHHHHHHHHH
Confidence 3458899999643 345688999999999 7778899999999999998888877555 554
No 18
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=95.17 E-value=0.11 Score=40.94 Aligned_cols=66 Identities=20% Similarity=0.190 Sum_probs=51.1
Q ss_pred CCCEEEEEEEEeecccCCccccccCchhHHHHHHHHHHHHHHHhc--ccCCCceEeeEEecCC-CChHHHHHHHHHHHh
Q psy9174 48 SGDVLLGGLMMIHSRSESSVCGPIMAQGGIQALETMLYTIDRINA--ELTMNLTLGAHVLDDC-DQDTHGLEMAVDFIK 123 (127)
Q Consensus 48 ~GDv~IGglFplh~~~~~~~C~~~~~~~~~q~~lAmiFAIeEIN~--~LLPNITLGy~I~DsC-~~~~~al~~~l~~ls 123 (127)
+..+.||.++|+.-. ....+-....++..|+||||+ -++ +.++-+.++|+. ++...+.+.+-+++.
T Consensus 12 ~~~i~IG~~~plsG~---------~a~~g~~~~~g~~lA~~~iN~~ggi~-G~~i~l~~~D~~~~~~~~a~~~a~~li~ 80 (419)
T 3h5l_A 12 SDPVVIGCPAPLTGI---------VAADGIEFQRGIQMAADEINAVGGIL-GRPIELVFADTQSKGVDVVIQSAQRLID 80 (419)
T ss_dssp -CCEEEEEEECCSST---------THHHHHHHHHHHHHHHHHHHTTTSBT-TBCEEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred CCCEEEEEeecCCCc---------ccccCHHHHHHHHHHHHHHHhcCCcC-ceEEEEEEccCCCCCHHHHHHHHHHHhh
Confidence 456999999986421 233456677899999999999 555 899999999987 578888888888776
No 19
>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B
Probab=94.90 E-value=0.11 Score=40.39 Aligned_cols=66 Identities=6% Similarity=-0.031 Sum_probs=52.3
Q ss_pred CCEEEEEEEEeecccCCccccccCchhHHHHHHHHHHHHHHHhc--ccCCCceEeeEEecCCCChHHHHHHHHHHHh
Q psy9174 49 GDVLLGGLMMIHSRSESSVCGPIMAQGGIQALETMLYTIDRINA--ELTMNLTLGAHVLDDCDQDTHGLEMAVDFIK 123 (127)
Q Consensus 49 GDv~IGglFplh~~~~~~~C~~~~~~~~~q~~lAmiFAIeEIN~--~LLPNITLGy~I~DsC~~~~~al~~~l~~ls 123 (127)
+.+.||.++|+.-. ....+-....++..|+||||+ --+++.++-+.++|+++++..+.+.+-.++.
T Consensus 3 ~~i~IG~~~plsG~---------~a~~g~~~~~g~~lA~~~iN~~~ggi~G~~i~l~~~D~~~~~~~a~~~~~~li~ 70 (374)
T 3n0x_A 3 DDLKIALIYGKTGP---------LEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQ 70 (374)
T ss_dssp -CEEEEEEECCSST---------THHHHHHHHHHHHHHHHHHTTTCCEETTEEEEEEEEECTTCHHHHHHHHHHHHH
T ss_pred CCEEEEEecCCCCc---------hhhhCHHHHHHHHHHHHHHhccCCCcCCEEEEEEEecCCCCHHHHHHHHHHHHH
Confidence 46889999976421 223456677899999999997 3457999999999999999999999888876
No 20
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=94.54 E-value=0.22 Score=37.67 Aligned_cols=67 Identities=19% Similarity=0.169 Sum_probs=49.9
Q ss_pred CEEEEEEEEeecccCCccccccCchhHHHHHHHHHHHHHHHhc-ccCCCceEeeEEecCCCChHHHHHHHHHHHhcc
Q psy9174 50 DVLLGGLMMIHSRSESSVCGPIMAQGGIQALETMLYTIDRINA-ELTMNLTLGAHVLDDCDQDTHGLEMAVDFIKGR 125 (127)
Q Consensus 50 Dv~IGglFplh~~~~~~~C~~~~~~~~~q~~lAmiFAIeEIN~-~LLPNITLGy~I~DsC~~~~~al~~~l~~lsg~ 125 (127)
.+.||.++|..- . ....+.+...++..|++|||+ --++|.++.+.++|++.++..+.+.+-.+++..
T Consensus 2 ~i~IG~~~p~~g--------~-~~~~~~~~~~g~~~a~~~iN~~ggi~G~~l~l~~~d~~~~~~~~~~~~~~l~~~~ 69 (346)
T 1usg_A 2 DIKVAVVGAMSG--------P-IAQWGDMEFNGARQAIKDINAKGGIKGDKLVGVEYDDACDPKQAVAVANKIVNDG 69 (346)
T ss_dssp CEEEEEEECSSS--------T-THHHHHHHHHHHHHHHHHHHHTTTBTTBCEEEEEEECTTCHHHHHHHHHHHHHTT
T ss_pred cEEEEEEeCCCC--------c-chhcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeCCCCCHHHHHHHHHHHHhCC
Confidence 477888887521 1 123345677899999999999 334899999999999999988887777776543
No 21
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=93.91 E-value=0.25 Score=38.39 Aligned_cols=66 Identities=12% Similarity=0.005 Sum_probs=51.9
Q ss_pred CCEEEEEEEEeecccCCccccccCchhHHHHHHHHHHHHHHHhc--ccCCCceEeeEEecCCCChHHHHHHHHHHHhc
Q psy9174 49 GDVLLGGLMMIHSRSESSVCGPIMAQGGIQALETMLYTIDRINA--ELTMNLTLGAHVLDDCDQDTHGLEMAVDFIKG 124 (127)
Q Consensus 49 GDv~IGglFplh~~~~~~~C~~~~~~~~~q~~lAmiFAIeEIN~--~LLPNITLGy~I~DsC~~~~~al~~~l~~lsg 124 (127)
..+.||.++|+.-. ....+-....++..|+||||+ -++ +.++-+.++|+..++..+.+.+-.++..
T Consensus 6 ~~i~IG~~~p~sG~---------~a~~g~~~~~g~~~a~~~iN~~ggi~-G~~i~l~~~D~~~~~~~~~~~~~~li~~ 73 (392)
T 3lkb_A 6 QQVTLFWSGAITGP---------TSDAGAPYGAAVEDYCKWANERKLVP-GVVFNCVVRDDQYNNANTQRFFEEAVDR 73 (392)
T ss_dssp EEEEEEEEECSSST---------THHHHHHHHHHHHHHHHHHHHHTSST-TEEEEEEEEECTTCHHHHHHHHHHHHHT
T ss_pred CceEEEEEecccCc---------hhhcChhHHHHHHHHHHHHHhcCCcC-CeEeEEEEecCCCCHHHHHHHHHHHHhh
Confidence 46899999976421 133455677899999999999 554 8899999999999999998888887764
No 22
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=93.62 E-value=0.35 Score=36.88 Aligned_cols=65 Identities=23% Similarity=0.211 Sum_probs=50.2
Q ss_pred CCCEEEEEEEEeecccCCccccccCchhHHHHHHHHHHHHHHHhc--ccCCCceEeeEEecCCCChHHHHHHHHHHH
Q psy9174 48 SGDVLLGGLMMIHSRSESSVCGPIMAQGGIQALETMLYTIDRINA--ELTMNLTLGAHVLDDCDQDTHGLEMAVDFI 122 (127)
Q Consensus 48 ~GDv~IGglFplh~~~~~~~C~~~~~~~~~q~~lAmiFAIeEIN~--~LLPNITLGy~I~DsC~~~~~al~~~l~~l 122 (127)
.+.+.||.++|..-. ...-+-....++..|++|+|+ -++ |.++-+.++|+..++..+.+.+-.++
T Consensus 2 ~~~i~IG~i~p~sg~---------~~~~~~~~~~g~~~a~~~~n~~ggi~-G~~~~l~~~d~~~~~~~~~~~~~~l~ 68 (358)
T 3hut_A 2 SLALLLGYELPLTGA---------NAAYGRVFQEAARLQLDRFNAAGGVG-GRPVDILYADSRDDADQARTIARAFV 68 (358)
T ss_dssp -CCEEEEEEECSSST---------THHHHHHHHHHHHHHHHHHHHTTTBT-TBCEEEEEEECTTCHHHHHHHHHHHH
T ss_pred CccEEEEEEeccCCc---------hhhcCHHHHHHHHHHHHHHHhhCCCC-CeEEEEEEecCCCCHHHHHHHHHHHh
Confidence 356889999975311 123345667889999999998 555 99999999999999998888877777
No 23
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus}
Probab=93.59 E-value=0.14 Score=40.08 Aligned_cols=60 Identities=10% Similarity=0.093 Sum_probs=45.6
Q ss_pred cCCCEEEEEEEEeecccCCccccccCchhHHHHHHHHHHHHHHHhc-ccCCCceEeeEEecCCC-ChHHHHHHHHHHHhc
Q psy9174 47 ISGDVLLGGLMMIHSRSESSVCGPIMAQGGIQALETMLYTIDRINA-ELTMNLTLGAHVLDDCD-QDTHGLEMAVDFIKG 124 (127)
Q Consensus 47 ~~GDv~IGglFplh~~~~~~~C~~~~~~~~~q~~lAmiFAIeEIN~-~LLPNITLGy~I~DsC~-~~~~al~~~l~~lsg 124 (127)
.+..+.||++||..- . ....|+-.||||||+ - +|.+.+.|+.. ++..+.+.+-++++.
T Consensus 7 ~~~~ikIG~~~~~sg-----------~----~~~~a~~lAv~~iN~~g-----~l~~~~~D~~~~d~~~a~~~~~~l~~~ 66 (384)
T 3saj_A 7 MPNNIQIGGLFPNQQ-----------S----QEHAAFRFALSQLTEPP-----KLLPQIDIVNISDSFEMTYRFCSQFSK 66 (384)
T ss_dssp CCSEEEEEEEESCSS-----------S----HHHHHHHHHHTTCCSSS-----EEEEEEEECCTTCHHHHHHHHHHHHHT
T ss_pred CCcceeEEEEecCCC-----------H----HHHHHHHHHHHHHhcCC-----ccceeeEecccCchhhHHHHHHHHHhc
Confidence 456799999997532 1 455689999999999 5 89999999765 788788877777654
Q ss_pred cC
Q psy9174 125 RV 126 (127)
Q Consensus 125 ~~ 126 (127)
.|
T Consensus 67 ~V 68 (384)
T 3saj_A 67 GV 68 (384)
T ss_dssp TC
T ss_pred Ce
Confidence 33
No 24
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=92.13 E-value=0.66 Score=35.52 Aligned_cols=66 Identities=14% Similarity=0.060 Sum_probs=50.1
Q ss_pred CCCEEEEEEEEeecccCCccccccCchhHHHHHHHHHHHHHHHhc--ccCCCceEeeEEecCCCChHHHHHHHHHHHh
Q psy9174 48 SGDVLLGGLMMIHSRSESSVCGPIMAQGGIQALETMLYTIDRINA--ELTMNLTLGAHVLDDCDQDTHGLEMAVDFIK 123 (127)
Q Consensus 48 ~GDv~IGglFplh~~~~~~~C~~~~~~~~~q~~lAmiFAIeEIN~--~LLPNITLGy~I~DsC~~~~~al~~~l~~ls 123 (127)
+..+.||.++|..-. ....+-....++..|+||||+ -+ .+.++-+.++|+..++..+.+.+-.++.
T Consensus 3 ~~~i~IG~~~p~sG~---------~~~~g~~~~~g~~~a~~~~N~~ggi-~G~~i~l~~~D~~~~~~~~~~~~~~l~~ 70 (364)
T 3lop_A 3 LADISVIQSLPLSGS---------QAVTGRALNAGARLYFDWLNLNGGI-NGETIRLVARDDEQKIEQTVRNVRDMAR 70 (364)
T ss_dssp --CEEEEEEECSSST---------THHHHHHHHHHHHHHHHHHHHTTTB-TTBCEEEEEEECTTCHHHHHHHHHHHHH
T ss_pred CCeEEEEEEecCCCc---------chhccHHHHHHHHHHHHHHHhcCCc-CCeEEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 456899999975411 123345567789999999998 44 4889999999999999988888877776
No 25
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=91.89 E-value=0.93 Score=34.52 Aligned_cols=67 Identities=12% Similarity=0.159 Sum_probs=51.2
Q ss_pred CCCEEEEEEEEeecccCCccccccCchhHHHHHHHHHHHHHHHhc--ccCCCceEeeEEecCCCChHHHHHHHHHHHhc
Q psy9174 48 SGDVLLGGLMMIHSRSESSVCGPIMAQGGIQALETMLYTIDRINA--ELTMNLTLGAHVLDDCDQDTHGLEMAVDFIKG 124 (127)
Q Consensus 48 ~GDv~IGglFplh~~~~~~~C~~~~~~~~~q~~lAmiFAIeEIN~--~LLPNITLGy~I~DsC~~~~~al~~~l~~lsg 124 (127)
+.-|.||.++|+.= . ....+-....++-.|+||||+ -++ +-++-+.++|+.+++..+.+.+-+++..
T Consensus 5 ~~tIkIG~~~plsG--------~-~a~~G~~~~~g~~lAv~~iN~~GGi~-Gr~ielv~~D~~~~p~~a~~~a~~li~~ 73 (353)
T 4gnr_A 5 EKTIKIGFNFEESG--------S-LAAYGTAEQKGAQLAVDEINAAGGID-GKQIEVVDKDNKSETAEAASVTTNLVTQ 73 (353)
T ss_dssp -CEEEEEEEECCSS--------T-THHHHHHHHHHHHHHHHHHHHTTCBT-TBEEEEEEEECTTCHHHHHHHHHHHHHT
T ss_pred CCeEEEEEEeCCcC--------c-hhHhHHHHHHHHHHHHHHHHhcCCCC-CeEEEEEEecCCCCHHHHHHHHHHHHhh
Confidence 34578999987631 1 233456667789999999999 444 7888899999999999999998888754
No 26
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=91.80 E-value=0.8 Score=34.87 Aligned_cols=66 Identities=14% Similarity=0.139 Sum_probs=51.2
Q ss_pred CCCEEEEEEEEeecccCCccccccCchhHHHHHHHHHHHHHHHhcccCCCceEeeEEecCCCChHHHHHHHHHHHh
Q psy9174 48 SGDVLLGGLMMIHSRSESSVCGPIMAQGGIQALETMLYTIDRINAELTMNLTLGAHVLDDCDQDTHGLEMAVDFIK 123 (127)
Q Consensus 48 ~GDv~IGglFplh~~~~~~~C~~~~~~~~~q~~lAmiFAIeEIN~~LLPNITLGy~I~DsC~~~~~al~~~l~~ls 123 (127)
.+.+.||.++|..-. ...-+-....++..|++|+|.. ++|.++-+.++|+++++..+.+.+-.++.
T Consensus 4 ~~~i~IG~~~p~sg~---------~~~~g~~~~~g~~~a~~~~~~~-i~G~~i~l~~~D~~~~~~~~~~~~~~li~ 69 (368)
T 4eyg_A 4 EDTFKVGLIVPMTGG---------QASTGKQIDNAIKLYIKKHGDT-VAGKKIEVILKDDAAIPDNTKRLAQELIV 69 (368)
T ss_dssp CCEEEEEEEECSSST---------THHHHHHHHHHHHHHHHHHCSE-ETTEEEEEEEEECTTCHHHHHHHHHHHHH
T ss_pred CCcEEEEEEeCCcCc---------chhccHHHHHHHHHHHHHcCCC-CCCeEEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 457899999975311 1233455677899999999864 57899999999999999999888877775
No 27
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=91.67 E-value=0.69 Score=35.36 Aligned_cols=67 Identities=12% Similarity=0.111 Sum_probs=52.3
Q ss_pred cCCCEEEEEEEEeecccCCccccccCchhHHHHHHHHHHHHHHHhcccCCCceEeeEEecCCCChHHHHHHHHHHHhc
Q psy9174 47 ISGDVLLGGLMMIHSRSESSVCGPIMAQGGIQALETMLYTIDRINAELTMNLTLGAHVLDDCDQDTHGLEMAVDFIKG 124 (127)
Q Consensus 47 ~~GDv~IGglFplh~~~~~~~C~~~~~~~~~q~~lAmiFAIeEIN~~LLPNITLGy~I~DsC~~~~~al~~~l~~lsg 124 (127)
.+-...||.+.|+.-. ....+-....++..|+||||+ ..+.++-+.++|+++++..+.+.+-.++..
T Consensus 13 ~~~~~~iG~~~plsG~---------~a~~g~~~~~g~~~a~~~in~--i~G~~i~l~~~D~~~~~~~~~~~~~~l~~~ 79 (366)
T 3td9_A 13 MRKVVKIAVILPMTGG---------ISAFGRMVWEGIQIAHEEKPT--VLGEEVELVLLDTRSEKTEAANAAARAIDK 79 (366)
T ss_dssp ---CEEEEEEECCSST---------THHHHHHHHHHHHHHHHHCCE--ETTEEEEEEEEECTTCHHHHHHHHHHHHHT
T ss_pred hcceEEEEEEECCcCc---------chhcCHHHHHHHHHHHHHhhh--cCCeEEEEEEecCCCCHHHHHHHHHHHhcc
Confidence 4457899999987521 234567778899999999998 458899999999999999998888887764
No 28
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=88.70 E-value=1 Score=34.33 Aligned_cols=67 Identities=13% Similarity=0.120 Sum_probs=50.3
Q ss_pred cCCCEEEEEEEEeecccCCccccccCchhHHHHHHHHHHHHHHHhcccCCCceEeeEEecCCCChHHHHHHHHHHHh
Q psy9174 47 ISGDVLLGGLMMIHSRSESSVCGPIMAQGGIQALETMLYTIDRINAELTMNLTLGAHVLDDCDQDTHGLEMAVDFIK 123 (127)
Q Consensus 47 ~~GDv~IGglFplh~~~~~~~C~~~~~~~~~q~~lAmiFAIeEIN~~LLPNITLGy~I~DsC~~~~~al~~~l~~ls 123 (127)
+...+.||.++|..-. ...-+-....++..|++|+| ..++|.++.+.++|+..+...+.+.+-.++.
T Consensus 13 ~~~~i~IG~~~p~sg~---------~~~~~~~~~~g~~~a~~~~n-g~~~g~~~~l~~~d~~~~~~~~~~~~~~l~~ 79 (375)
T 4evq_A 13 QAGALKVGLLLPYSGT---------YAPLGEAITRGLELYVQSQG-GKLGGRSISFVKVDDESAPPKATELTTKLIQ 79 (375)
T ss_dssp --CCEEEEEEECSSST---------THHHHHHHHHHHHHHHHHTT-TEETTEEEEEEEEECTTCHHHHHHHHHCCCC
T ss_pred hCCCeEEEEEeCCCCc---------chhcCHHHHHHHHHHHHHhC-CCcCCEEEEEEEecCCCCHHHHHHHHHHHHh
Confidence 4467999999975321 12334566778999999999 5678999999999999999988877766655
No 29
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=88.27 E-value=1.8 Score=33.48 Aligned_cols=66 Identities=17% Similarity=0.106 Sum_probs=46.3
Q ss_pred CCCEEEEEEEEeecccCCccccccCchhHHHHHHHHHHHHHHHhc--ccCCCceEeeEEecCCCChHHHHHHHHHHHh
Q psy9174 48 SGDVLLGGLMMIHSRSESSVCGPIMAQGGIQALETMLYTIDRINA--ELTMNLTLGAHVLDDCDQDTHGLEMAVDFIK 123 (127)
Q Consensus 48 ~GDv~IGglFplh~~~~~~~C~~~~~~~~~q~~lAmiFAIeEIN~--~LLPNITLGy~I~DsC~~~~~al~~~l~~ls 123 (127)
++.+.||.++|..- . ...-+-+...++..|++|||+ -++ |.++-+.++|++.+...+.+.+-.++.
T Consensus 5 ~~~~~IG~~~p~sg--------~-~~~~~~~~~~g~~~a~~~~N~~ggi~-G~~l~l~~~d~~~~~~~~~~~~~~l~~ 72 (385)
T 1pea_A 5 QERPLIGLLFSETG--------V-TADIERSQRYGALLAVEQLNREGGVG-GRPIETLSQDPGGDPDRYRLCAEDFIR 72 (385)
T ss_dssp ---CEEEEECCSSS--------T-THHHHHHHHHHHHHHHHHHHTTTTBT-TBCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCeEEEEEECCCC--------c-chhcCHHHHHHHHHHHHHhccccCCC-CeEEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 34578898887421 0 122344566789999999999 554 777888899999998888777777764
No 30
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=86.55 E-value=3.8 Score=31.32 Aligned_cols=65 Identities=12% Similarity=0.159 Sum_probs=49.1
Q ss_pred CCEEEEEEEEeecccCCccccccCchh-HHHHHHHHHHHHHHHhcccCCCceEeeEEecCCCChHHHHHHHHHHHh
Q psy9174 49 GDVLLGGLMMIHSRSESSVCGPIMAQG-GIQALETMLYTIDRINAELTMNLTLGAHVLDDCDQDTHGLEMAVDFIK 123 (127)
Q Consensus 49 GDv~IGglFplh~~~~~~~C~~~~~~~-~~q~~lAmiFAIeEIN~~LLPNITLGy~I~DsC~~~~~al~~~l~~ls 123 (127)
+.+.||.++|+.-. .... +-....++..|+||||.-+ .+.++-+.++|+..++..+.+.+-.++.
T Consensus 3 ~~i~IG~~~p~sg~---------~a~~~g~~~~~g~~~A~~~~~ggi-~G~~i~l~~~D~~~~~~~a~~~~~~li~ 68 (375)
T 3i09_A 3 DSVKIGFITDMSGL---------YADIDGQGGLEAIKMAVADFGGKV-NGKPIEVVYADHQNKADIAASKAREWMD 68 (375)
T ss_dssp SSEEEEEEECSSST---------TTTTSHHHHHHHHHHHHHHHTSEE-TTEEEEEEEEECTTCHHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCcc---------cccccCHHHHHHHHHHHHHhCCCC-CCeEEEEEEecCCCCHHHHHHHHHHHHh
Confidence 46889999875321 1111 3456778999999996544 4789999999999999999888888776
No 31
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=86.26 E-value=2.8 Score=32.18 Aligned_cols=66 Identities=18% Similarity=0.260 Sum_probs=48.9
Q ss_pred CCCEEEEEEEEeecccCCccccccCchh-HHHHHHHHHHHHHHHhcccCCCceEeeEEecCCCChHHHHHHHHHHHh
Q psy9174 48 SGDVLLGGLMMIHSRSESSVCGPIMAQG-GIQALETMLYTIDRINAELTMNLTLGAHVLDDCDQDTHGLEMAVDFIK 123 (127)
Q Consensus 48 ~GDv~IGglFplh~~~~~~~C~~~~~~~-~~q~~lAmiFAIeEIN~~LLPNITLGy~I~DsC~~~~~al~~~l~~ls 123 (127)
++.+.||.++|+.-. .... +-....++..|+||||.-+ .+.++.+.++|++.++..+.+.+-.++.
T Consensus 4 ~~~i~IG~~~p~sg~---------~a~~~g~~~~~g~~~a~~~i~ggi-~G~~i~l~~~D~~~~~~~a~~~~~~li~ 70 (379)
T 3n0w_A 4 TGQVTLGVLTDMSSV---------YADSAGKGSVAAVQLAIEDVGGKA-LGQPVKLVSADYQMKTDVALSIAREWFD 70 (379)
T ss_dssp --CCEEEEEECSSST---------TTTTSHHHHHHHHHHHHHHTTTEE-TTEECEEEEEECTTCHHHHHHHHHHHHH
T ss_pred CCcEEEEEEeCCccc---------cccccCHHHHHHHHHHHHHhcCCC-CCeEEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 356889999985321 1122 4456778999999997643 4789999999999999999988888776
No 32
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=58.88 E-value=7.6 Score=28.96 Aligned_cols=63 Identities=19% Similarity=0.262 Sum_probs=45.1
Q ss_pred CCCEEEEEEEEeecccCCccccccCchhHHHHHHHHHHHHHHHhcccCCCceEeeEEecCCCChHHHHHHHHHHHhc
Q psy9174 48 SGDVLLGGLMMIHSRSESSVCGPIMAQGGIQALETMLYTIDRINAELTMNLTLGAHVLDDCDQDTHGLEMAVDFIKG 124 (127)
Q Consensus 48 ~GDv~IGglFplh~~~~~~~C~~~~~~~~~q~~lAmiFAIeEIN~~LLPNITLGy~I~DsC~~~~~al~~~l~~lsg 124 (127)
...+.||.++|..-. ....+-....++..|+|||| +.++-+.++|+..++..+.+.+-.++..
T Consensus 5 ~~~i~IG~~~p~sg~---------~~~~g~~~~~g~~~a~~~i~-----g~~i~l~~~d~~~~~~~~~~~~~~l~~~ 67 (362)
T 3snr_A 5 TNEITVGISVTTTGP---------AAALGIPERNALEFVVKEIS-----GHPIKIIVLDDGGDPTAATTNARRFVTE 67 (362)
T ss_dssp CCCEEEEEEECCSST---------THHHHHHHHHGGGGSCSEET-----TEEEEEEEEECTTCHHHHHHHHHHHHHT
T ss_pred CCCeEEEEEecccCc---------hhhcCHHHHHHHHHHHHHhC-----CeEEEEEEecCCCCHHHHHHHHHHHHhc
Confidence 457899999975311 12223445667778888886 4567788999999999888887777764
No 33
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=49.72 E-value=15 Score=27.58 Aligned_cols=63 Identities=17% Similarity=0.126 Sum_probs=44.9
Q ss_pred CCCEEEEEEEEeecccCCccccccCchhHHHHHHHHHHHHHHHhcccCCCceEeeEEecCCCChHHHHHHHHHHHhc
Q psy9174 48 SGDVLLGGLMMIHSRSESSVCGPIMAQGGIQALETMLYTIDRINAELTMNLTLGAHVLDDCDQDTHGLEMAVDFIKG 124 (127)
Q Consensus 48 ~GDv~IGglFplh~~~~~~~C~~~~~~~~~q~~lAmiFAIeEIN~~LLPNITLGy~I~DsC~~~~~al~~~l~~lsg 124 (127)
.+.+.||.++|+.-. ....+-....++..|+|||| +.++-+.++|+..++..+.+.+-.++..
T Consensus 25 ~~~i~IG~~~p~sg~---------~~~~g~~~~~g~~~a~~~i~-----G~~i~l~~~d~~~~~~~~~~~~~~l~~~ 87 (386)
T 3sg0_A 25 QAEIKIGITMSASGP---------GAALGQPQSKTVAALPKEIG-----GEKVTYFALDDESDPTKAAQNARKLLSE 87 (386)
T ss_dssp CCCEEEEEEECCSST---------THHHHHHHHHHGGGSCSEET-----TEEEEEEEEECTTCHHHHHHHHHHHHHT
T ss_pred CCceEEEEEeccCCc---------hhhhcHHHHHHHHHHHHHcC-----CEEEEEEEecCCCCHHHHHHHHHHHHhh
Confidence 457899999986421 12223445567777888886 4557778999999999888888777764
No 34
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*
Probab=49.14 E-value=84 Score=23.81 Aligned_cols=63 Identities=11% Similarity=0.044 Sum_probs=43.2
Q ss_pred EEEEEEEEeecccCCccccccCchhHHHHHHHHHHHHHHHhcccCCCceEeeEEecCC-CChHHHHHHHHHHHh
Q psy9174 51 VLLGGLMMIHSRSESSVCGPIMAQGGIQALETMLYTIDRINAELTMNLTLGAHVLDDC-DQDTHGLEMAVDFIK 123 (127)
Q Consensus 51 v~IGglFplh~~~~~~~C~~~~~~~~~q~~lAmiFAIeEIN~~LLPNITLGy~I~DsC-~~~~~al~~~l~~ls 123 (127)
|.||.++|+.=. ....+-....++-.|+||||.-+ .+-++=+.++|+- .++..+...+-.++.
T Consensus 6 IkIG~~~plSG~---------~a~~G~~~~~g~~la~~~~nggi-~G~~ielv~~D~~~~~p~~a~~~a~~Li~ 69 (371)
T 4f06_A 6 IKVGVIGTMSGP---------YALFGKNYKMGIDAWVAEHGNKV-AGHTVEFVYRDEVSPNPAQSKALAQELIV 69 (371)
T ss_dssp EEEEEEECCSST---------THHHHHHHHHHHHHHHHHHCSEE-TTEEEEEEEEECCSSCHHHHHHHHHHHHH
T ss_pred EEEEEEeCCcCc---------hHHhHHHHHHHHHHHHHHhCCCC-CCEEEEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 778888876411 12234455567888999999632 3667777889985 577888888777765
No 35
>3lqv_P Splicing factor 3B subunit 1; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_P 2f9j_P
Probab=39.08 E-value=38 Score=19.14 Aligned_cols=20 Identities=25% Similarity=0.194 Sum_probs=15.2
Q ss_pred HHHHHHHHHhc--------ccCCCceEeeEE
Q psy9174 82 TMLYTIDRINA--------ELTMNLTLGAHV 104 (127)
Q Consensus 82 AmiFAIeEIN~--------~LLPNITLGy~I 104 (127)
.+---|+|-|+ .+||. ||.|
T Consensus 11 ~~~~ei~~RNrpltDEeLD~mLP~---GYkI 38 (39)
T 3lqv_P 11 RWEREIDERNRPLSDEELDAMFPE---GYKV 38 (39)
T ss_dssp HHHHHHHHTTCCCCHHHHHHTCCS---SEEE
T ss_pred HhhccchhhcCCCCHHHHHHhCCC---Cccc
Confidence 34446788898 79994 9998
Done!