RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9174
(127 letters)
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics,
structural genomics consortium, SGC, CE membrane,
G-protein coupled receptor; HET: Z99; 2.26A {Homo
sapiens}
Length = 479
Score = 87.9 bits (218), Expect = 1e-21
Identities = 33/90 (36%), Positives = 53/90 (58%), Gaps = 3/90 (3%)
Query: 39 WPSKYSAEISGDVLLGGLMMIHSR-SESSVCGPIMAQGGIQALETMLYTIDRINAELTM- 96
+ +I GD++LGGL I+ + + + CG I GIQ LE ML+ ID IN + +
Sbjct: 2 NFLRREIKIEGDLVLGGLFPINEKGTGTEECGRINEDRGIQRLEAMLFAIDEINKDDYLL 61
Query: 97 -NLTLGAHVLDDCDQDTHGLEMAVDFIKGR 125
+ LG H+LD C +DT+ LE +++F++
Sbjct: 62 PGVKLGVHILDTCSRDTYALEQSLEFVRAS 91
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors,
dimerization, glutamic acid BIN structural genomics,
structural genomics consortium; HET: Z99; 2.80A {Homo
sapiens} PDB: 2e4z_A*
Length = 481
Score = 87.6 bits (217), Expect = 1e-21
Identities = 36/89 (40%), Positives = 56/89 (62%), Gaps = 3/89 (3%)
Query: 41 SKYSAEISGDVLLGGLMMIHSR-SESSVCGPIMAQGGIQALETMLYTIDRINAELTM--N 97
+ +S I GDV LGGL +H++ CG I + GI LE MLY +D+IN++ + N
Sbjct: 7 APHSIRIEGDVTLGGLFPVHAKGPSGVPCGDIKRENGIHRLEAMLYALDQINSDPNLLPN 66
Query: 98 LTLGAHVLDDCDQDTHGLEMAVDFIKGRV 126
+TLGA +LD C +DT+ LE ++ F++ +
Sbjct: 67 VTLGARILDTCSRDTYALEQSLTFVQALI 95
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor,
neuron, central nerve system, SI protein; HET: NAG GLU;
2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A*
2e4y_A*
Length = 555
Score = 87.9 bits (218), Expect = 1e-21
Identities = 33/90 (36%), Positives = 53/90 (58%), Gaps = 3/90 (3%)
Query: 39 WPSKYSAEISGDVLLGGLMMIHSR-SESSVCGPIMAQGGIQALETMLYTIDRINAELTM- 96
+ +I GD++LGGL I+ + + + CG I GIQ LE ML+ ID IN + +
Sbjct: 3 NFMRREIKIEGDLVLGGLFPINEKGTGTEECGRINEDRGIQRLEAMLFAIDEINKDNYLL 62
Query: 97 -NLTLGAHVLDDCDQDTHGLEMAVDFIKGR 125
+ LG H+LD C +DT+ LE +++F++
Sbjct: 63 PGVKLGVHILDTCSRDTYALEQSLEFVRAS 92
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors,
dimerization, glutamic acid BIN structural genomics,
structural genomics consortium; HET: Z99 NAG; 1.90A
{Homo sapiens} PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A*
1iss_A* 3lmk_A*
Length = 496
Score = 83.7 bits (207), Expect = 3e-20
Identities = 31/95 (32%), Positives = 53/95 (55%), Gaps = 7/95 (7%)
Query: 39 WPSKYSAEISGDVLLGGLMMIHSRSESS-----VCGPIMAQGGIQALETMLYTIDRINAE 93
+ A + GDV++G L +H + + CG I Q GIQ +E M +T+D+INA+
Sbjct: 6 SSQRSVARMDGDVIIGALFSVHHQPPAEKVPERKCGEIREQYGIQRVEAMFHTLDKINAD 65
Query: 94 LTM--NLTLGAHVLDDCDQDTHGLEMAVDFIKGRV 126
+ N+TLG+ + D C + LE +++FI+ +
Sbjct: 66 PVLLPNITLGSEIRDSCWHSSVALEQSIEFIRDSL 100
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap
module, G-protein coupled receptor, signaling; 2.38A
{Homo sapiens} PDB: 4f12_A*
Length = 433
Score = 55.7 bits (134), Expect = 2e-10
Identities = 17/78 (21%), Positives = 26/78 (33%), Gaps = 8/78 (10%)
Query: 48 SGDVLLGGLMMIHSRSESSVCGPIMAQGGIQALETMLYTIDRINAE-LTMNLTLGAHVLD 106
S + + GLM + G L + I++I E L L + D
Sbjct: 12 SPPLSIMGLMPLTKEVAKGSI-------GRGVLPAVELAIEQIRNESLLRPYFLDLRLYD 64
Query: 107 DCDQDTHGLEMAVDFIKG 124
+ GL+ D IK
Sbjct: 65 TECDNAKGLKAFYDAIKY 82
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein
glycoprotein, cell junction, cell membrane,
glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus
norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Length = 395
Score = 32.4 bits (73), Expect = 0.025
Identities = 7/43 (16%), Positives = 11/43 (25%), Gaps = 2/43 (4%)
Query: 83 MLYTIDRINA--ELTMNLTLGAHVLDDCDQDTHGLEMAVDFIK 123
+ ++ IN L N TL D+
Sbjct: 26 FRFAVNTINRNRTLLPNTTLTYDTQKINLYDSFEASKKACDQL 68
>1nb0_A Hypothetical protein FLJ11149; beta barrel, transferase; HET: ADP;
1.70A {Homo sapiens} SCOP: b.43.5.1 PDB: 1nb9_A* 1p4m_A*
1q9s_A*
Length = 147
Score = 25.2 bits (56), Expect = 5.6
Identities = 4/22 (18%), Positives = 10/22 (45%)
Query: 102 AHVLDDCDQDTHGLEMAVDFIK 123
H++ +D +G + V +
Sbjct: 79 THIMHTFKEDFYGEILNVAIVG 100
>1n08_A Putative riboflavin kinase; phophoryl transferases, flavin
cofactors, metal binding; HET: ADP; 1.60A
{Schizosaccharomyces pombe} SCOP: b.43.5.1 PDB: 1n05_A*
1n07_A* 1n06_A*
Length = 163
Score = 25.2 bits (56), Expect = 5.7
Identities = 4/22 (18%), Positives = 10/22 (45%)
Query: 102 AHVLDDCDQDTHGLEMAVDFIK 123
H+++ +D + M V +
Sbjct: 97 VHLIERQGEDFYEEIMRVIVLG 118
>3bnw_A Riboflavin kinase, putative; APO structure, structural genomics,
structural genomics of P protozoa consortium, SGPP,
transferase; 2.40A {Trypanosoma brucei}
Length = 181
Score = 25.0 bits (55), Expect = 7.6
Identities = 3/22 (13%), Positives = 9/22 (40%)
Query: 102 AHVLDDCDQDTHGLEMAVDFIK 123
+ L + D +G + + +
Sbjct: 101 PYFLHEFGWDFYGAVVKIIVLG 122
>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266,
NESG, PAR240, structural genomics, PSI-2; HET: FAD;
1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2
d.16.1.2 PDB: 2rgj_A*
Length = 410
Score = 25.0 bits (55), Expect = 8.6
Identities = 5/12 (41%), Positives = 7/12 (58%)
Query: 70 PIMAQGGIQALE 81
P+ A G QA+
Sbjct: 317 PMGANGASQAIL 328
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.137 0.394
Gapped
Lambda K H
0.267 0.0597 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,846,697
Number of extensions: 96051
Number of successful extensions: 98
Number of sequences better than 10.0: 1
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 15
Length of query: 127
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 44
Effective length of database: 4,384,350
Effective search space: 192911400
Effective search space used: 192911400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.7 bits)