RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9174
         (127 letters)



>d1ewka_ c.93.1.1 (A:) Metabotropic glutamate receptor subtype 1
           {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 477

 Score = 80.4 bits (197), Expect = 2e-19
 Identities = 32/90 (35%), Positives = 52/90 (57%), Gaps = 7/90 (7%)

Query: 45  AEISGDVLLGGLMMIHSRSESS-----VCGPIMAQGGIQALETMLYTIDRINA--ELTMN 97
           A + GDV++G L  +H +  +       CG I  Q GIQ +E M +T+D+INA   L  N
Sbjct: 4   ARMDGDVIIGALFSVHHQPPAEKVPERKCGEIREQYGIQRVEAMFHTLDKINADPVLLPN 63

Query: 98  LTLGAHVLDDCDQDTHGLEMAVDFIKGRVL 127
           +TLG+ + D C   +  LE +++FI+  ++
Sbjct: 64  ITLGSEIRDSCWHSSVALEQSIEFIRDSLI 93


>d1dp4a_ c.93.1.1 (A:) Hormone binding domain of the atrial
           natriuretic peptide receptor {Rat (Rattus norvegicus)
           [TaxId: 10116]}
          Length = 425

 Score = 33.6 bits (75), Expect = 0.004
 Identities = 5/66 (7%), Positives = 17/66 (25%), Gaps = 10/66 (15%)

Query: 50  DVLLGGLMMIHSRSESSVCGPIMAQGGIQALETMLYTIDRINAE--LTMNLTLGAHVLDD 107
           D+ +  ++ +                  +    +   + R+ A   L    T+   +   
Sbjct: 2   DLTVAVVLPLT--------NTSYPWSWARVGPAVELALARVKARPDLLPGWTVRMVLGSS 53

Query: 108 CDQDTH 113
            +    
Sbjct: 54  ENAAGV 59


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.137    0.394 

Gapped
Lambda     K      H
   0.267   0.0387    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 426,825
Number of extensions: 15854
Number of successful extensions: 39
Number of sequences better than 10.0: 1
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 3
Length of query: 127
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 52
Effective length of database: 1,377,846
Effective search space: 71647992
Effective search space used: 71647992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.2 bits)