Query psy918
Match_columns 504
No_of_seqs 266 out of 1530
Neff 7.6
Searched_HMMs 29240
Date Fri Aug 16 20:59:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy918.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/918hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w63_M Adaptor-related protein 100.0 1.5E-90 5.1E-95 730.5 40.0 407 98-504 1-408 (423)
2 2vgl_M AP-2 complex subunit MU 100.0 1.3E-88 4.4E-93 718.2 48.0 404 99-504 1-421 (435)
3 1i31_A Clathrin coat assembly 100.0 3.8E-65 1.3E-69 515.9 28.8 283 221-504 1-300 (314)
4 4en2_M AP-1 complex subunit MU 100.0 8.4E-64 2.9E-68 493.8 25.0 251 254-504 1-251 (266)
5 3ml6_A Chimeric complex betwee 100.0 3.7E-60 1.3E-64 489.9 29.9 253 251-504 104-371 (385)
6 3l81_A AP-4 complex subunit MU 100.0 5.2E-59 1.8E-63 466.8 25.8 254 247-504 16-287 (301)
7 1w63_Q Adapter-related protein 100.0 2.6E-29 9E-34 228.9 16.2 137 99-237 1-140 (158)
8 2vgl_S AP-2 complex subunit si 100.0 1.2E-28 4.1E-33 220.9 15.9 135 99-235 1-139 (142)
9 3tjz_C Coatomer subunit zeta-1 99.9 6.1E-27 2.1E-31 211.5 16.0 133 99-236 12-150 (153)
10 1w63_M Adaptor-related protein 99.4 6.5E-14 2.2E-18 147.0 3.3 120 2-123 28-199 (423)
11 2vgl_M AP-2 complex subunit MU 99.4 1.4E-13 4.8E-18 144.9 4.0 118 3-123 28-201 (435)
12 3g9h_A Suppressor of yeast pro 98.7 9.7E-06 3.3E-10 80.4 27.2 209 264-495 67-302 (328)
13 1i31_A Clathrin coat assembly 98.0 2.2E-06 7.7E-11 85.9 2.3 64 59-123 7-80 (314)
14 2vgl_S AP-2 complex subunit si 97.8 4.2E-06 1.4E-10 74.1 0.3 58 3-63 31-106 (142)
15 1w63_Q Adapter-related protein 97.6 1.1E-05 3.8E-10 72.7 0.7 44 20-63 45-106 (158)
16 3tjz_C Coatomer subunit zeta-1 97.0 0.00023 7.9E-09 63.6 2.5 42 22-63 57-117 (153)
17 3l81_A AP-4 complex subunit MU 95.7 0.0028 9.7E-08 62.8 1.7 48 75-123 12-63 (301)
18 4en2_M AP-1 complex subunit MU 95.6 0.0039 1.3E-07 60.7 1.9 37 86-123 1-42 (266)
19 3ml6_A Chimeric complex betwee 92.4 0.051 1.8E-06 55.6 2.5 41 82-123 102-151 (385)
20 4afi_A AP-3 complex subunit de 91.8 1.1 3.6E-05 40.5 10.2 83 108-193 62-144 (173)
21 4b93_A Vesicle-associated memb 90.4 1.9 6.6E-05 39.3 10.7 83 108-193 10-92 (189)
22 2nut_C Vesicle-trafficking pro 89.7 3.1 0.0001 38.0 11.6 48 146-193 54-101 (196)
23 2vx8_A Nucleoporin-like protei 89.2 2.5 8.6E-05 37.8 10.2 49 145-193 86-134 (169)
24 3cpt_A Mitogen-activated prote 77.9 23 0.00078 30.6 10.7 92 100-191 38-136 (143)
25 1nrj_A Signal recognition part 73.1 37 0.0013 29.2 10.6 72 99-170 1-93 (158)
26 3bw6_A Synaptobrevin homolog Y 72.6 42 0.0014 28.7 11.4 48 146-193 62-110 (144)
27 2fh5_A Signal recognition part 66.0 49 0.0017 29.8 10.6 93 99-193 10-104 (185)
28 2j3t_C Trafficking protein par 63.0 29 0.00099 29.9 8.3 92 98-192 1-109 (145)
29 3cue_A Transport protein parti 61.6 70 0.0024 29.6 10.9 25 98-122 1-25 (219)
30 3kyq_A YKT6, synaptobrevin hom 58.8 21 0.00071 32.6 6.9 48 146-193 59-107 (199)
31 2j3w_A Sedlin, trafficking pro 50.3 78 0.0027 26.9 8.9 91 97-192 2-112 (142)
32 3cue_C Transport protein parti 48.2 39 0.0013 29.6 6.7 92 98-192 1-115 (159)
33 2jxc_B Stonin-2, stoned B; end 43.7 6.5 0.00022 26.1 0.6 20 79-98 6-28 (45)
34 2wl8_A Peroxisomal biogenesis 20.7 1.7E+02 0.0059 24.5 5.7 41 178-220 65-107 (126)
No 1
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=100.00 E-value=1.5e-90 Score=730.52 Aligned_cols=407 Identities=83% Similarity=1.300 Sum_probs=356.4
Q ss_pred hheeeeEEEeCCCCeeeeeecccCcchhHHHHHHHHhhcccccCCCCCEEEeCCEEEEEEEeCCEEEEEEecCCccHHHH
Q psy918 98 MSASALYILDVKGKVLISRNYRGDVEMGVIEKFMPLLMEKEEEGMLTPLLQTSDCTFAYIKYNNLFIVSTTKKNANIALV 177 (504)
Q Consensus 98 v~i~~~~i~~~~G~vl~~r~y~~~~~~~~~~~f~~~v~~~~~~~~~~pv~~~~~~~~v~~~~~~ly~v~~~~~~~n~l~~ 177 (504)
||+++++|+|.+|+++++|+|+++.+++.++.|.+++..+.+.+.++|+++.++++|+|+++++|||+|+++.++||+++
T Consensus 1 mMI~~i~I~~~~Gk~~l~k~y~~~~~~~~~~~f~~~v~~~~~~~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~~ 80 (423)
T 1w63_M 1 MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHNNLYLVATSKKNACVSLV 80 (423)
T ss_dssp -CCCEEEEEETTTEECSCBCCSCSCTTTTHHHHHHHHHHHHHTSCCCSEEEETTEEEEEEEETTEEEEEEESSCCCTHHH
T ss_pred CceEEEEEECCCCCEEEEEecCCCCChHHHHHHHHHHhhccccCCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHHHH
Confidence 68999999999999999999999888888999999988653223689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccccHHHHHhhHHHHHHHHHHHHhCCcccccCHHHHHHhhhccCcccccCC-CCCcccccccccc
Q psy918 178 FVFLNKIVRVFTEYFKEIEEESIRDNFVVIYELLDELIDFGYPQTTDSKILQEYITQEGHKLEIQP-RIPMAVTNAVSWR 256 (504)
Q Consensus 178 ~~~L~~i~~vl~~y~~~l~e~~i~~n~~~i~~lldEiid~G~p~~t~~~~l~~~i~~~~~~~~~~~-~~~~~~~~~~~WR 256 (504)
++|||+|+++|++|||.++|++|++||+.||++||||+|+|+|++||++.|+++|.++++.++.++ +++++.++++|||
T Consensus 81 le~L~~~v~~l~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~i~wr 160 (423)
T 1w63_M 81 FSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGYPQTTDSKILQEFITQEGHKLETGAPRPPATVTNAVSWR 160 (423)
T ss_dssp HHHHHHHHHHHHHHSSCCSHHHHHHHHHHHHHHHHHHCSSSSCCCCCSTTTTTTCCSCCCCCCCC-----------CCSS
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHHHhcCCEEeecCHHHHHHhhcCCCccccccccCCcccccCCCCcc
Confidence 999999999999999999999999999999999999999999999999999999999998753222 3445567789999
Q ss_pred cCCCccccceEEEEEEEeEEEEEccCCceEEEEEEEEEEEEEEeCCCCeEEEEecCcccccccCCCCCCceeeccccccc
Q psy918 257 SEGIKYRKNEVFLDVIESVNLLANSNGNVLRSEIVGAIKMRVYLSGMPELRLGLNDKVLFESTGRGKSKSVELEDVKFHQ 336 (504)
Q Consensus 257 ~~~~~~~~nEI~vdV~E~v~~~~~~~G~v~~~~V~G~I~~ks~LsG~P~~~l~Ln~~~~~~~~~~~~~~~i~l~d~~fH~ 336 (504)
+.|++|++|||||||+|+|+++++++|.+++++|.|.|.|+|+|+|+|+|+|+||++..++..+++...++.|+||+|||
T Consensus 161 ~~g~~~~~nei~vdV~E~v~~~~~~~G~v~~~eV~G~I~~~~~LsG~P~~~l~Ln~~~~~~~~~~~~~~~v~l~d~~fHp 240 (423)
T 1w63_M 161 SEGIKYRKNEVFLDVIEAVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKSKSVELEDVKFHQ 240 (423)
T ss_dssp CSSCCCSSCEEEEEEEEEEEEEEETTTEEEEEEEEEEEEEEEECSSCCEEEEEECSCC-------------CEEEEEECT
T ss_pred ccCCccccceEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEEeCCCCeEEEEECCccccccccccccCceEcccccccc
Confidence 99999999999999999999999999999999999999999999999999999999887765444445678899999999
Q ss_pred cccccCcCCCceEEEeCCCCceeEEEEEecCCCCCceEEEEEEEecccEEEEEEEEeeccCCCccccceEEEEecCCCCC
Q psy918 337 CVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIERFVHSRVEYMIKAKSQFKRRSTANNVEIVIPVPADA 416 (504)
Q Consensus 337 cV~~~~f~~~r~i~F~PPdG~F~Lm~Yr~~~~~~~P~~i~~~~~~~~~~~le~~l~l~~~~~~~~~~~~v~I~iP~P~~~ 416 (504)
||++++|+++|+|+|+||||+|+||+||++.+..||+++.++++..+++++||+++++++|+++..+++|.|+||+|+++
T Consensus 241 cV~~~~f~~~r~isf~PPdg~F~Lm~Yr~~~~~~~P~~i~~~~~~~~~~~ve~~l~~~~~~~~~~~~~~V~I~IP~P~~~ 320 (423)
T 1w63_M 241 CVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKHSHSRIEYMVKAKSQFKRRSTANNVEIHIPVPNDA 320 (423)
T ss_dssp TEEESSSSSCCEEEECCCSEEEEEEEEEEECCCCCTTCCEEEEEEETTTEEEEEEEEECCSCTTSEEESCEEEEECCTTC
T ss_pred cccHHHhCCCCeEEEECCCCcEEEEEEEecCCcCCCEEEEEEEEecCCCEEEEEEEEcccCCCcceeeEEEEEEeCCCCc
Confidence 99999999999999999999999999999988889999999998766679999999999999888899999999999999
Q ss_pred CCCeEEeeeeEEEEeCCCcEEEEEeceecCCceEEEEEEEEecCCCCCCCCCCCCEEEEEEECCccccceEEEEEEeeec
Q psy918 417 DSPKFKTTIGSVKYTPEQSAITWTIKSFPGGKEYLMRAHFGLPSVENEDAEGKPPIQVKFEIPYFTTSGIQVRYLKIIEK 496 (504)
Q Consensus 417 ~~~~~~~s~G~~~~~~~~~~lvW~I~k~~g~~~~~l~~~~~l~s~~~~~~~~~~pi~v~F~ip~~t~SGl~V~~l~v~~~ 496 (504)
.+++++++.|+++|++++++++|+|++++|+++++++|++++++......+.++||+|+|++|++++|||+|++|+|.++
T Consensus 321 ~~~~~~~~~G~~~y~~~~~~l~W~I~~i~~~~~~~l~~~~~l~~~~~~~~~~~~pi~v~F~i~~~t~Sgl~V~~l~v~~~ 400 (423)
T 1w63_M 321 DSPKFKTTVGSVKWVPENSEIVWSVKSFPGGKEYLMRAHFGLPSVEAEDKEGKPPISVKFEIPYFTTSGIQVRYLKIIEK 400 (423)
T ss_dssp CCCEEEESSSEEEEETGGGEEEEECSEEETTCEEEEEEEEEC----------CCCEEEEBCCSSCCTTCCCEEEEEEECS
T ss_pred ccceEEecCccEEEecCCCEEEEEeCcCCCCCcEEEEEEEEccCCCcccccCCCcEEEEEEECCEeCCCCEEEEEEeEcc
Confidence 99999999999999999999999999999999999999999976432345779999999999999999999999999997
Q ss_pred CCCcccCC
Q psy918 497 SGYQALPW 504 (504)
Q Consensus 497 ~~y~~~~w 504 (504)
++|+|+||
T Consensus 401 ~~y~~~kw 408 (423)
T 1w63_M 401 SGYQAIPW 408 (423)
T ss_dssp SCCCCEEE
T ss_pred CCCCCcCc
Confidence 79999999
No 2
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Probab=100.00 E-value=1.3e-88 Score=718.16 Aligned_cols=404 Identities=41% Similarity=0.767 Sum_probs=357.6
Q ss_pred heeeeEEEeCCCCeeeeeecccCcchhHHHHHHHHhhcccccCCCCCEEEeCCEEEEEEEeCCEEEEEEecCCccHHHHH
Q psy918 99 SASALYILDVKGKVLISRNYRGDVEMGVIEKFMPLLMEKEEEGMLTPLLQTSDCTFAYIKYNNLFIVSTTKKNANIALVF 178 (504)
Q Consensus 99 ~i~~~~i~~~~G~vl~~r~y~~~~~~~~~~~f~~~v~~~~~~~~~~pv~~~~~~~~v~~~~~~ly~v~~~~~~~n~l~~~ 178 (504)
||++++|+|.+|+++++|+|+++.+++..+.|++++....+ ..++|++++++++|+|+++++|||+|+++.++||++++
T Consensus 1 MI~~i~I~~~~Gk~~l~k~y~~~~~~~~~~~f~~~v~~~~~-~~~~~ii~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~~l 79 (435)
T 2vgl_M 1 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQ-QVRSPVTNIARTSFFHVKRSNIWLAAVTKQNVNAAMVF 79 (435)
T ss_dssp CCCEEEEECTTCCEEEEEECSSSCCHHHHHHHHHHTTTCSS-CCCCSEEEETTEEEEEEEETTEEEEEEESSCCCHHHHH
T ss_pred CeEEEEEECCCCCEEEEEecCCCCChhHHHHHHHHHhcccc-CCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHHHHH
Confidence 58999999999999999999998888889999998886543 36889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccccHHHHHhhHHHHHHHHHHHHhCCcccccCHHHHHHhhhccCccccc-----CCCCCccccccc
Q psy918 179 VFLNKIVRVFTEYFKEIEEESIRDNFVVIYELLDELIDFGYPQTTDSKILQEYITQEGHKLEI-----QPRIPMAVTNAV 253 (504)
Q Consensus 179 ~~L~~i~~vl~~y~~~l~e~~i~~n~~~i~~lldEiid~G~p~~t~~~~l~~~i~~~~~~~~~-----~~~~~~~~~~~~ 253 (504)
+|||+|+++|++|||.++|++|++||+.||++||||+|+|+|++||++.|++++.+++++... .+.+|++.++++
T Consensus 80 e~L~~~v~vl~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i 159 (435)
T 2vgl_M 80 EFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQI 159 (435)
T ss_dssp HHHHHHHHHHHHHHSSCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHGGGCCCCCCCCC-----------------C
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHhHHHHHHHHHHHhcCCEEEecCHHHHHHHhcccccccccccccccccccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999876431 233455667789
Q ss_pred ccccCCCccccceEEEEEEEeEEEEEccCCceEEEEEEEEEEEEEEeCCCCeEEEEecCcccccccCCC--------CCC
Q psy918 254 SWRSEGIKYRKNEVFLDVIESVNLLANSNGNVLRSEIVGAIKMRVYLSGMPELRLGLNDKVLFESTGRG--------KSK 325 (504)
Q Consensus 254 ~WR~~~~~~~~nEI~vdV~E~v~~~~~~~G~v~~~~V~G~I~~ks~LsG~P~~~l~Ln~~~~~~~~~~~--------~~~ 325 (504)
|||+.|++|++|||||||+|+|+++++++|.+++++|.|.|.|+|+|+|||+|+|+||++..++..+++ ...
T Consensus 160 ~wr~~gi~~~~nei~vdV~E~v~~~~~~~G~v~~~eV~G~I~~~~~LsG~P~~~l~ln~~~~~~~~~~~~~~~~~~~~~~ 239 (435)
T 2vgl_M 160 GWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQ 239 (435)
T ss_dssp CSSCSCCCCSSCEEEEEEEEEEEEEECTTCCEEEEEEEEEEEEEEECSSCCEEEEEECSSSCC-----------------
T ss_pred ccccccCCcCcceEEEEEEEEEEEEEcCCCCEEEEEEEEEEEEEEEeCCCCeEEEEeCchhhcccccccccccccccccC
Confidence 999999999999999999999999999999999999999999999999999999999998766543211 125
Q ss_pred ceeeccccccccccccCcCCCceEEEeCCCCceeEEEEEecCCCCCceEEEEEEEecccEEEEEEEEeeccCCCccccce
Q psy918 326 SVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIERFVHSRVEYMIKAKSQFKRRSTANN 405 (504)
Q Consensus 326 ~i~l~d~~fH~cV~~~~f~~~r~i~F~PPdG~F~Lm~Yr~~~~~~~P~~i~~~~~~~~~~~le~~l~l~~~~~~~~~~~~ 405 (504)
++.||||+|||||++++|+++|+|+|+||||+|+||+||++.+..+||.+.|+++..+.+++||+++++++|+++..+++
T Consensus 240 ~~~l~d~~fH~cV~~~~f~~~r~isF~PPdg~F~Lm~Yr~~~~~~~P~~i~~~~~~~~~~~ve~~l~~~~~~~~~~~~~~ 319 (435)
T 2vgl_M 240 SIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQK 319 (435)
T ss_dssp CCCCCEEEECTTEEEC-----CCEEECCCSEEEEEEEEEECSSCCCSEEEEEEEECCTTTEEEEEEEEEECSCTTSEEEE
T ss_pred ceEccccccceeecHhHhccCceEEEECCCCcEEEEEEEecCCcCCCeEEEEEEEecCCCEEEEEEEEeCCCCCCceeeE
Confidence 68899999999999999999999999999999999999999888899999999987666789999999999998888999
Q ss_pred EEEEecCCCCCCCCeEEeeeeEEEEeCCCcEEEEEeceecCCceEEEEEEEEecCCCCCCCCCCCCEEEEEEECCccccc
Q psy918 406 VEIVIPVPADADSPKFKTTIGSVKYTPEQSAITWTIKSFPGGKEYLMRAHFGLPSVENEDAEGKPPIQVKFEIPYFTTSG 485 (504)
Q Consensus 406 v~I~iP~P~~~~~~~~~~s~G~~~~~~~~~~lvW~I~k~~g~~~~~l~~~~~l~s~~~~~~~~~~pi~v~F~ip~~t~SG 485 (504)
|.|+||+|+++..++++++.|+++|++.+++++|+|++++|+++++|+|+++|++......+.++||+|+|++| +++||
T Consensus 320 V~I~IP~P~~~~~~~~~~~~G~~~y~~~~~~l~W~I~~~~~~~~~~l~~~~~l~~~~~~~~~~~~pi~v~F~i~-~t~Sg 398 (435)
T 2vgl_M 320 IEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMKESQISAEIELLPTNDKKKWARPPISMNFEVP-FAPSG 398 (435)
T ss_dssp EEEEEECCSSCCCEEEEESSSEEEEETTTTEEEEEEEEEETTCEEEEEEEEECCCCSCSCCCCCCCEEEEEEES-SCTTC
T ss_pred EEEEEECCCCCCCceEEecceeEEEccCCCEEEEEeccCCCCCCEEEEEEEEecCCCcCcccCCCcEEEEEEEE-ecccc
Confidence 99999999999999999999999999999999999999999999999999999875434567799999999999 99999
Q ss_pred eEEEEEEeeec----CCCcccCC
Q psy918 486 IQVRYLKIIEK----SGYQALPW 504 (504)
Q Consensus 486 l~V~~l~v~~~----~~y~~~~w 504 (504)
|+|++|+|.++ ++|+|+||
T Consensus 399 l~V~~l~v~~~~~~~~~y~~~kw 421 (435)
T 2vgl_M 399 LKVRYLKVFEPKLNYSDHDVIKW 421 (435)
T ss_dssp CCEEEEEEECSSSSCBGGGSEEE
T ss_pred cEEEEEEEeccccccCCCCCcCc
Confidence 99999999997 68999999
No 3
>1i31_A Clathrin coat assembly protein AP50; beta-sandwich, peptide-binding site, protein-peptide complex, clathrin adaptor; 2.50A {Rattus norvegicus} SCOP: b.2.7.1 PDB: 1bw8_A 2pr9_A 3h85_A 1bxx_A 1hes_A 1h6e_A
Probab=100.00 E-value=3.8e-65 Score=515.86 Aligned_cols=283 Identities=41% Similarity=0.773 Sum_probs=225.2
Q ss_pred cccCHHHHHHhhhccCcccc-----cCCCCCcccccccccccCCCccccceEEEEEEEeEEEEEccCCceEEEEEEEEEE
Q psy918 221 QTTDSKILQEYITQEGHKLE-----IQPRIPMAVTNAVSWRSEGIKYRKNEVFLDVIESVNLLANSNGNVLRSEIVGAIK 295 (504)
Q Consensus 221 ~~t~~~~l~~~i~~~~~~~~-----~~~~~~~~~~~~~~WR~~~~~~~~nEI~vdV~E~v~~~~~~~G~v~~~~V~G~I~ 295 (504)
|+||++.||++|..+++... ....+|++.++++|||+.|++|++|||||||+|+|+++++++|.+++++|.|.|.
T Consensus 1 q~te~~~Lk~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~WR~~gi~y~~NEi~vdV~E~v~~~i~~~G~v~~~eV~G~I~ 80 (314)
T 1i31_A 1 QNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVV 80 (314)
T ss_dssp -------------------------------------CTTSCSCCCCSSCEEEEEEEEEEEEEECSSCCEEEEEEEEEEE
T ss_pred CcCChHHHHHhhcCCCeeccccccccccCCCccccCCCCCCccCCccccceEEEEEEEEEEEEECCCCCEEEEEEEEEEE
Confidence 68999999999999987542 1334566778899999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCeEEEEecCcccccccCCC--------CCCceeeccccccccccccCcCCCceEEEeCCCCceeEEEEEecC
Q psy918 296 MRVYLSGMPELRLGLNDKVLFESTGRG--------KSKSVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNT 367 (504)
Q Consensus 296 ~ks~LsG~P~~~l~Ln~~~~~~~~~~~--------~~~~i~l~d~~fH~cV~~~~f~~~r~i~F~PPdG~F~Lm~Yr~~~ 367 (504)
|+|+|+|||+|+|+||++..++..+.+ ...++.|+||+|||||++++|+++|+|+|+||||+|+||+||++.
T Consensus 81 ~~~~LsG~P~l~l~Ln~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~FHpcV~l~~f~~~r~IsFiPPDG~F~Lm~Yr~~~ 160 (314)
T 1i31_A 81 MKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTK 160 (314)
T ss_dssp EEEECSSSCEEEEEESCCC-----------------CCCCCCSEEEECTTSBCC----CCCEEECCCSEEEEEEEEEECS
T ss_pred EEEEcCCCCeEEEEECCchhccccccccccccccccCCceEcccccccccccHHHcCCcceEEEECCCCCeEEEEEEecC
Confidence 999999999999999998766543211 135688999999999999999999999999999999999999998
Q ss_pred CCCCceEEEEEEEecccEEEEEEEEeeccCCCccccceEEEEecCCCCCCCCeEEeeeeEEEEeCCCcEEEEEeceecCC
Q psy918 368 HVKPLIWIESVIERFVHSRVEYMIKAKSQFKRRSTANNVEIVIPVPADADSPKFKTTIGSVKYTPEQSAITWTIKSFPGG 447 (504)
Q Consensus 368 ~~~~P~~i~~~~~~~~~~~le~~l~l~~~~~~~~~~~~v~I~iP~P~~~~~~~~~~s~G~~~~~~~~~~lvW~I~k~~g~ 447 (504)
+..+||.+.+++...+.+++||+++++++|+.+..++||.|+||+|.++.++++.++.|+++|++.+++++|+|++++|+
T Consensus 161 ~~~lP~~v~~~~~~~g~~~iE~~l~~~~~~~~~~~~~nV~I~IP~P~~~~~~~~~~~~G~~~y~~~~~~l~W~I~~i~g~ 240 (314)
T 1i31_A 161 DIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGM 240 (314)
T ss_dssp SCCCCEEEEEEEEEETTTEEEEEEEEEECSCTTCEEEEEEEEEECCTTEEEEEEECSSSEEEEEGGGTEEEEEEEEEESS
T ss_pred CcCCCEEEEEEEEecCCcEEEEEEEEccCCCCcceeeEEEEEEECCCCcccceEEecCceEEEecCCCEEEEEeCcCCCC
Confidence 88899999999987666799999999999998888999999999999998899999999999999999999999999999
Q ss_pred ceEEEEEEEEecCCCCCCCCCCCCEEEEEEECCccccceEEEEEEeeec----CCCcccCC
Q psy918 448 KEYLMRAHFGLPSVENEDAEGKPPIQVKFEIPYFTTSGIQVRYLKIIEK----SGYQALPW 504 (504)
Q Consensus 448 ~~~~l~~~~~l~s~~~~~~~~~~pi~v~F~ip~~t~SGl~V~~l~v~~~----~~y~~~~w 504 (504)
.++.|+|+++|.+......+.++||+|+|++| +++|||+|++|+|.++ ++|+|+||
T Consensus 241 ~e~~l~~~~~l~s~~~~~~~~~~pi~v~F~ip-~t~Sgl~V~~l~v~e~~~~~~~y~~~kw 300 (314)
T 1i31_A 241 KESQISAEIELLPTNDKKKWARPPISMNFEVP-FAPSGLKVRYLKVFEPKLNYSDHDVIKW 300 (314)
T ss_dssp EEEEEEEEEEECCCCSSSCCCCCCEEEEEEES-SCTTCCCEEEEEEECSSSSCCGGGCEEE
T ss_pred CcEEEEEEEEecCCCcCCccCCCcEEEEEEEe-ecccCcEEEEEEEeccccccCCCCccCc
Confidence 99999999999875434567799999999999 9999999999999997 68999999
No 4
>4en2_M AP-1 complex subunit MU-1; human immunodeficiency virus 1, HIV, NEF, antigen presentation, HOST defense, adaptor protein complex 1, MU1 subunit; 2.58A {Mus musculus} PDB: 4emz_A
Probab=100.00 E-value=8.4e-64 Score=493.82 Aligned_cols=251 Identities=90% Similarity=1.403 Sum_probs=231.2
Q ss_pred ccccCCCccccceEEEEEEEeEEEEEccCCceEEEEEEEEEEEEEEeCCCCeEEEEecCcccccccCCCCCCceeecccc
Q psy918 254 SWRSEGIKYRKNEVFLDVIESVNLLANSNGNVLRSEIVGAIKMRVYLSGMPELRLGLNDKVLFESTGRGKSKSVELEDVK 333 (504)
Q Consensus 254 ~WR~~~~~~~~nEI~vdV~E~v~~~~~~~G~v~~~~V~G~I~~ks~LsG~P~~~l~Ln~~~~~~~~~~~~~~~i~l~d~~ 333 (504)
+||+.|++|++|||||||+|+|+++++++|.+++++|.|+|.|+|+|+|+|+|+|+||++..++..+++...++.++||+
T Consensus 1 ~WR~~~i~y~~nei~vdV~E~v~~~~~~~G~v~~~~v~G~i~~~~~lsG~p~~~l~ln~~~~~~~~~~~~~~~~~l~d~~ 80 (266)
T 4en2_M 1 SWRSEGIKYRKNEVFLDVIEAVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKSKSVELEDVK 80 (266)
T ss_dssp CCCCTTCCCSSEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEECCSCCEEEEEECBHHHHHHTTCTTSCCBCCEEEE
T ss_pred CCcCCCCccccCeEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEECCCCCEEEEEEcCccccccccccccCccCccccc
Confidence 69999999999999999999999999999999999999999999999999999999999887776665556788999999
Q ss_pred ccccccccCcCCCceEEEeCCCCceeEEEEEecCCCCCceEEEEEEEecccEEEEEEEEeeccCCCccccceEEEEecCC
Q psy918 334 FHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIERFVHSRVEYMIKAKSQFKRRSTANNVEIVIPVP 413 (504)
Q Consensus 334 fH~cV~~~~f~~~r~i~F~PPdG~F~Lm~Yr~~~~~~~P~~i~~~~~~~~~~~le~~l~l~~~~~~~~~~~~v~I~iP~P 413 (504)
|||||+++.|+++|+|+|+||||+|+||+||++.+..|||++.+++++.+.+++++.++++++|+.+..++||.|+||+|
T Consensus 81 fH~cV~~~~f~~~r~i~f~PPdg~F~Lm~yr~~~~~~~Pi~i~~~~~~~~~~~vei~v~~k~~~~~~~~~~nV~I~IP~P 160 (266)
T 4en2_M 81 FHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKHSHSRIEYMVKAKSQFKRRSTANNVEIHIPVP 160 (266)
T ss_dssp ECTTBCHHHHHHHCCCEECCCSEEEEEEEEEECCCCCCSEEEEEEEEEEETTEEEEEEEEEECBCTTCEEEEEEEEEECC
T ss_pred cccccCHhHccccceEEEeCCCCceEEEEEEecCCCCCCEEEEEEEecCCCEEEEEEEEEecCCCCCcEEEEEEEEECCC
Confidence 99999999999999999999999999999999988889999999999877789999999999999888999999999999
Q ss_pred CCCCCCeEEeeeeEEEEeCCCcEEEEEeceecCCceEEEEEEEEecCCCCCCCCCCCCEEEEEEECCccccceEEEEEEe
Q psy918 414 ADADSPKFKTTIGSVKYTPEQSAITWTIKSFPGGKEYLMRAHFGLPSVENEDAEGKPPIQVKFEIPYFTTSGIQVRYLKI 493 (504)
Q Consensus 414 ~~~~~~~~~~s~G~~~~~~~~~~lvW~I~k~~g~~~~~l~~~~~l~s~~~~~~~~~~pi~v~F~ip~~t~SGl~V~~l~v 493 (504)
.++.++++.++.|+++|++++++++|+|++++|+++++|+|++.|++......+.++||+|+|+|||+++|||+|++|+|
T Consensus 161 ~~~~~~~~~~~~G~~~y~~~~~~lvW~I~~~~g~~e~~l~~~~~l~s~~~~~~~~~~pI~v~F~ip~~t~SGl~V~~L~v 240 (266)
T 4en2_M 161 NDADSPKFKTTVGSVKWVPENSEIVWSVKSFPGGKEYLMRAHFGLPSVEAEDKEGKPPISVKFEIPYFTTSGIQVRYLKI 240 (266)
T ss_dssp TTCEEEEEEESSSEEEEETTTTEEEEEEEEEESSCEEEEEEEEEC----------CCCEEEEEEEESEESSCCCEEEEEE
T ss_pred CCcCcceEEecCceEEEeccCCEEEEEEeeECCCcceEEEEEEEeCCCCCCCcccCCcEEEEEEeCCceeCCcEEEEEEe
Confidence 99989999999999999999999999999999999999999999987544456789999999999999999999999999
Q ss_pred eecCCCcccCC
Q psy918 494 IEKSGYQALPW 504 (504)
Q Consensus 494 ~~~~~y~~~~w 504 (504)
.++++|+++||
T Consensus 241 ~e~~~y~~~kw 251 (266)
T 4en2_M 241 IEKSGYQALPW 251 (266)
T ss_dssp ECSSCCCEEEE
T ss_pred eccCCCCCCCC
Confidence 99889999999
No 5
>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin adaptor AP-2 complex...; dishevelled, frizzled internalization; 3.50A {Mus musculus}
Probab=100.00 E-value=3.7e-60 Score=489.89 Aligned_cols=253 Identities=39% Similarity=0.735 Sum_probs=227.0
Q ss_pred ccccc---ccCCCccccceEEEEEEEeEEEEEccCCceEEEEEEEEEEEEEEeCCCCeEEEEecCcccccccCCC-----
Q psy918 251 NAVSW---RSEGIKYRKNEVFLDVIESVNLLANSNGNVLRSEIVGAIKMRVYLSGMPELRLGLNDKVLFESTGRG----- 322 (504)
Q Consensus 251 ~~~~W---R~~~~~~~~nEI~vdV~E~v~~~~~~~G~v~~~~V~G~I~~ks~LsG~P~~~l~Ln~~~~~~~~~~~----- 322 (504)
..+|| |+.|++|++|||||||+|+|+++++++|.+++++|.|+|.|+|+|+|||+|+|+||++..++..+++
T Consensus 104 ~~~~~~~~~~~gi~y~knEi~vdV~E~v~~~~~~~G~v~~~eV~G~I~~k~~LsG~P~~~l~LNd~~~~~~~~~~~~~~~ 183 (385)
T 3ml6_A 104 QPPPYHELEFGGSGGSRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADET 183 (385)
T ss_dssp CCCCCEEBCSSSBCCCCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEECSSCCEEEEEECC---------------
T ss_pred CCCCchhccccCCccccceEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEeCCCCCeEEEEEcCccccccccccccccc
Confidence 34599 7899999999999999999999999999999999999999999999999999999998776544321
Q ss_pred ---CCCceeeccccccccccccCcCCCceEEEeCCCCceeEEEEEecCCCCCceEEEEEEEecccEEEEEEEEeeccCCC
Q psy918 323 ---KSKSVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIERFVHSRVEYMIKAKSQFKR 399 (504)
Q Consensus 323 ---~~~~i~l~d~~fH~cV~~~~f~~~r~i~F~PPdG~F~Lm~Yr~~~~~~~P~~i~~~~~~~~~~~le~~l~l~~~~~~ 399 (504)
...++.|+||+|||||++++|+++|+|+|+||||+|+||+||++.+..+||++.|++++.+.++++|+++++++|++
T Consensus 184 ~~~~~~~i~l~d~~FH~CV~l~~f~~~r~IsFiPPDg~F~Lm~Yr~~~~~~~Pf~i~~~v~~~~~~~vei~v~lk~~f~~ 263 (385)
T 3ml6_A 184 SKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFKP 263 (385)
T ss_dssp -------CCCCEEEECTTBCCCCSSSCSEEEECCCSEEEEEEEEEECSSCCCSEEEEEEEEEETTTEEEEEEEEEECSCT
T ss_pred cccccCceEccccccccccChhHccccceEEEeCCCCceEEEEEEcCCCCCCCEEEEEEEEeCCCeEEEEEEEEeecCCC
Confidence 23578899999999999999999999999999999999999999888899999999998877899999999999999
Q ss_pred ccccceEEEEecCCCCCCCCeEEeeeeEEEEeCCCcEEEEEeceecCCceEEEEEEEEecCCCCCCCCCCCCEEEEEEEC
Q psy918 400 RSTANNVEIVIPVPADADSPKFKTTIGSVKYTPEQSAITWTIKSFPGGKEYLMRAHFGLPSVENEDAEGKPPIQVKFEIP 479 (504)
Q Consensus 400 ~~~~~~v~I~iP~P~~~~~~~~~~s~G~~~~~~~~~~lvW~I~k~~g~~~~~l~~~~~l~s~~~~~~~~~~pi~v~F~ip 479 (504)
+..+++|.|+||+|+++.++++.++.|+++|++++++++|+|++++|+++++|+|++.+++......+.++||+|+|+||
T Consensus 264 ~~~~~nV~I~IP~P~~~~~~~~~~~~G~~~y~~~~~~lvW~I~k~~g~~e~~l~~~~~l~~~~~~~~~~~~PI~v~F~Ip 343 (385)
T 3ml6_A 264 SLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMKESQISAEIELLPTNDKKKWARPPISMNFEVP 343 (385)
T ss_dssp TCCEEEEEEEEECCTTEEEEEEEESSSEEEEEGGGTEEEEEEEEECSSEEEEEEEEEEECCCSSCCSCCCCCEEEEEEES
T ss_pred cceEEEEEEEecCCCCcccceEEecCceEEEeccCcEEEEEeeeECCCcceEEEEEEEECCCCCCccccCCCEEEEEEEe
Confidence 99999999999999998889999999999999999999999999999999999999999865444567899999999999
Q ss_pred CccccceEEEEEEeeec----CCCcccCC
Q psy918 480 YFTTSGIQVRYLKIIEK----SGYQALPW 504 (504)
Q Consensus 480 ~~t~SGl~V~~l~v~~~----~~y~~~~w 504 (504)
+++|||+|++|+|.|+ ++|+++||
T Consensus 344 -~t~SGl~Vr~L~v~e~~~~~~~y~~~kw 371 (385)
T 3ml6_A 344 -FAPSGLKVRYLKVFEPKLNYSDHDVIKW 371 (385)
T ss_dssp -SCTTCCCEEEEEEECSSSCCCGGGCEEE
T ss_pred -ccccCCEEEEEEEecccCcccCCCcccc
Confidence 9999999999999888 67999999
No 6
>3l81_A AP-4 complex subunit MU-1; immunoglobulin-like beta-sandwich, coated PIT, golgi apparat membrane, phosphoprotein, protein transport, transport; 1.60A {Homo sapiens}
Probab=100.00 E-value=5.2e-59 Score=466.77 Aligned_cols=254 Identities=27% Similarity=0.520 Sum_probs=211.0
Q ss_pred cccccc-cccccCCCccccceEEEEEEEeEEEEEccCCceEEEEEEEEEEEEEEeCCCCeEEEEecCcccccccCC-CCC
Q psy918 247 MAVTNA-VSWRSEGIKYRKNEVFLDVIESVNLLANSNGNVLRSEIVGAIKMRVYLSGMPELRLGLNDKVLFESTGR-GKS 324 (504)
Q Consensus 247 ~~~~~~-~~WR~~~~~~~~nEI~vdV~E~v~~~~~~~G~v~~~~V~G~I~~ks~LsG~P~~~l~Ln~~~~~~~~~~-~~~ 324 (504)
.+++++ ++||+. +|++|||||||+|+|+++++++|.+++++|.|.|.|+|+|+|||+|+|+||++..+++.+. +..
T Consensus 16 ~a~~~pv~~wr~~--~~~knEi~vdV~E~v~~~~~~~G~v~~~eV~G~I~~~~~LsG~P~~~l~Lnd~~~~~~~~~~~~~ 93 (301)
T 3l81_A 16 SAASRPVLSSRSD--QSQKNEVFLDVVERLSVLIASNGSLLKVDVQGEIRLKSFLPSGSEMRIGLTEEFSVGKSELRGYG 93 (301)
T ss_dssp -------------------CEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEECCCTTCEEEEEECSSCEESCCTTTCCC
T ss_pred hhhcCcccccccc--cCCcceEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEeCCCCCeEEEEEccccccccccccccc
Confidence 344444 499985 8999999999999999999999999999999999999999999999999999987765532 234
Q ss_pred CceeeccccccccccccCcCCCceEEEeCCCCceeEEEEEecCCC--CCceEEEEEEEeccc-EEEEEEEEeeccCCCcc
Q psy918 325 KSVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHV--KPLIWIESVIERFVH-SRVEYMIKAKSQFKRRS 401 (504)
Q Consensus 325 ~~i~l~d~~fH~cV~~~~f~~~r~i~F~PPdG~F~Lm~Yr~~~~~--~~P~~i~~~~~~~~~-~~le~~l~l~~~~~~~~ 401 (504)
.++.|+||+|||||++++|+++|+|+|+||||+|+||+||++.+. .+||.+.++++..+. +++||+++++++|+.+.
T Consensus 94 ~~~~l~d~~fH~cV~~~~f~~~r~IsFiPPDg~F~Lm~Yr~~~~~~~~~P~~v~~~v~~~~~~~~ie~~l~l~~~f~~~~ 173 (301)
T 3l81_A 94 PGIRVDEVSFHSSVNLDEFESHRILRLQPPQGELTVMRYQLSDDLPSPLPFRLFPSVQWDRGSGRLQVYLKLRCDLLSKS 173 (301)
T ss_dssp SSSEESEEEEETTCBCTTHHHHCEEEECCCSEEEEEEEEEECSCCSSCCSEEEEEEEEECTTTSEEEEEEEEEECSCTTC
T ss_pred CceEccccccccccChhHccccceEEecCCCCeeEEEEEEecCCCccCCCEEEEEEEEECCCcEEEEEEEEEecCCCCCc
Confidence 678899999999999999999999999999999999999998764 699999999987643 79999999999999999
Q ss_pred ccceEEEEecCCCCCCCCe--EEeeeeEEEEeCCCcEEEEEeceecCCceEEEEEEEEecCCCCC---------CCCCCC
Q psy918 402 TANNVEIVIPVPADADSPK--FKTTIGSVKYTPEQSAITWTIKSFPGGKEYLMRAHFGLPSVENE---------DAEGKP 470 (504)
Q Consensus 402 ~~~~v~I~iP~P~~~~~~~--~~~s~G~~~~~~~~~~lvW~I~k~~g~~~~~l~~~~~l~s~~~~---------~~~~~~ 470 (504)
.++||.|+||+|.++.+++ +.++.|+++| ++++++|+|++++|+++.++++++++++.... ..+.++
T Consensus 174 ~~~nV~I~IPvP~~~~~~~~~~~~~~G~~~y--~~~~lvW~I~~~~g~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 251 (301)
T 3l81_A 174 QALNVRLHLPLPRGVVSLSQELSSPEQKAEL--AEGALRWDLPRVQGGSQLSGLFQMDVPGPPGPPSHGLSTSASPLGLG 251 (301)
T ss_dssp EEEEEEEEEECCTTCEEEEEEESSTTCEEEE--ETTEEEEEECCEETTCEEEEEEEEECCCCCC------------CCCC
T ss_pred EEEEEEEEEcCCCCcccceEEEeecCceEEE--eCcEEEEEEeeECCCcEEeEEEEEEecCCccccccccccccccccCC
Confidence 9999999999999988777 5467899999 88999999999999999999999998764321 256799
Q ss_pred CEEEEEEECCccccceEEEEEEeeecC--CCcccCC
Q psy918 471 PIQVKFEIPYFTTSGIQVRYLKIIEKS--GYQALPW 504 (504)
Q Consensus 471 pi~v~F~ip~~t~SGl~V~~l~v~~~~--~y~~~~w 504 (504)
||+|+|+|||+++|||+|++|+|.|++ +|+++||
T Consensus 252 PI~v~F~ip~~t~SGl~Vr~L~v~e~~~~~y~~~kw 287 (301)
T 3l81_A 252 PASLSFELPRHTCSGLQVRFLRLAFRPSGNANPHKW 287 (301)
T ss_dssp CEEEEEEEETCCSSCCCEEEEEEEC-------CEEE
T ss_pred CEEEEEEeCCccccCcEEEEEEEecccccCCCCccc
Confidence 999999999999999999999999984 6999999
No 7
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.96 E-value=2.6e-29 Score=228.94 Aligned_cols=137 Identities=20% Similarity=0.353 Sum_probs=127.7
Q ss_pred heeeeEEEeCCCCeeeeeecccCcch---hHHHHHHHHhhcccccCCCCCEEEeCCEEEEEEEeCCEEEEEEecCCccHH
Q psy918 99 SASALYILDVKGKVLISRNYRGDVEM---GVIEKFMPLLMEKEEEGMLTPLLQTSDCTFAYIKYNNLFIVSTTKKNANIA 175 (504)
Q Consensus 99 ~i~~~~i~~~~G~vl~~r~y~~~~~~---~~~~~f~~~v~~~~~~~~~~pv~~~~~~~~v~~~~~~ly~v~~~~~~~n~l 175 (504)
|+++++|+|.+|+++++|+|+++..+ ...+.|++++.+++ ..++|+++.++++|+|+++++|||+++++.++||+
T Consensus 1 MI~~i~Il~~~Gk~~lsk~y~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~Nel 78 (158)
T 1w63_Q 1 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARK--PKMCSFLEWRDLKVVYKRYASLYFCCAIEGQDNEL 78 (158)
T ss_dssp CEEEEEEECSSSCEEEEEESSCCCHHHHHHHHHHHHHHHHTSC--SSSCSEEEETTEEEEEEEETTEEEEEEECSSSCHH
T ss_pred CeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHhccC--CCCCCeEEECCEEEEEEEECCEEEEEEecCCCCHH
Confidence 58999999999999999999998775 57788888776653 35799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcccccHHHHHhhHHHHHHHHHHHHhCCcccccCHHHHHHhhhccCc
Q psy918 176 LVFVFLNKIVRVFTEYFKEIEEESIRDNFVVIYELLDELIDFGYPQTTDSKILQEYITQEGH 237 (504)
Q Consensus 176 ~~~~~L~~i~~vl~~y~~~l~e~~i~~n~~~i~~lldEiid~G~p~~t~~~~l~~~i~~~~~ 237 (504)
++++|||+++++|++|||.++|++|++||+.+|++||||+|+|+||+|+++.|+++|.+++.
T Consensus 79 ~~le~L~~~vevl~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~eT~~~~l~~~I~~~~~ 140 (158)
T 1w63_Q 79 ITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGGDVQDTSKKSVLKAIEQADL 140 (158)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHTTEETTEESCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHhCCEEEecCHHHHHHHHhcchh
Confidence 99999999999999999999999999999999999999999999999999999999988654
No 8
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=99.96 E-value=1.2e-28 Score=220.87 Aligned_cols=135 Identities=21% Similarity=0.358 Sum_probs=124.2
Q ss_pred heeeeEEEeCCCCeeeeeecc---cCcchhHHHHHHHHhhcccccCCCCCEEEeCCEEEEEEEeCCEEEEEEecCCccHH
Q psy918 99 SASALYILDVKGKVLISRNYR---GDVEMGVIEKFMPLLMEKEEEGMLTPLLQTSDCTFAYIKYNNLFIVSTTKKNANIA 175 (504)
Q Consensus 99 ~i~~~~i~~~~G~vl~~r~y~---~~~~~~~~~~f~~~v~~~~~~~~~~pv~~~~~~~~v~~~~~~ly~v~~~~~~~n~l 175 (504)
|+++++|+|.+|+++++|+|+ ++.+++..+.|++++..++ ++.+|+++.++++|+|+++++|||+++++.++||+
T Consensus 1 MI~~i~i~~~~Gk~~l~k~y~~~~~~~~~~~~~~f~~~v~~~~--~~~~~~~~~~~~~~vy~~~~~Lyfv~~~~~~~N~l 78 (142)
T 2vgl_S 1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRD--AKHTNFVEFRNFKIIYRRYAGLYFCICVDVNDNNL 78 (142)
T ss_dssp CEEEEEEEETTSCEEEEEECSCCCHHHHHHHHHHHHHHHHTCC--TTSCSEEEETTEEEEEEEETTEEEEEEECTTSCHH
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCChhhhHHHHHHHHHHHhcCC--CCCCCEEEECCEEEEEEEECCEEEEEEeCCCCCHH
Confidence 589999999999999999999 4445678999999988653 35899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcccccHHHHHhhHHHHHHHHHHHHhCCcccccC-HHHHHHhhhcc
Q psy918 176 LVFVFLNKIVRVFTEYFKEIEEESIRDNFVVIYELLDELIDFGYPQTTD-SKILQEYITQE 235 (504)
Q Consensus 176 ~~~~~L~~i~~vl~~y~~~l~e~~i~~n~~~i~~lldEiid~G~p~~t~-~~~l~~~i~~~ 235 (504)
++++|||+++++|++|||.++|++|++||+.+|++||||+|+|+|++|+ .+.|+.++.++
T Consensus 79 ~~le~L~~~ve~l~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~et~~~~il~~~~~~~ 139 (142)
T 2vgl_S 79 AYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKQLLMLQ 139 (142)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHhCCEEEEcCHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999996 67788887664
No 9
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A
Probab=99.95 E-value=6.1e-27 Score=211.51 Aligned_cols=133 Identities=17% Similarity=0.279 Sum_probs=115.8
Q ss_pred heeeeEEEeCCCCeeeeeecccCc-c---hhH-HHHHHHHhhcccccCCCCCEEEeCCEEEEEEEeCCEEEEEEecCCcc
Q psy918 99 SASALYILDVKGKVLISRNYRGDV-E---MGV-IEKFMPLLMEKEEEGMLTPLLQTSDCTFAYIKYNNLFIVSTTKKNAN 173 (504)
Q Consensus 99 ~i~~~~i~~~~G~vl~~r~y~~~~-~---~~~-~~~f~~~v~~~~~~~~~~pv~~~~~~~~v~~~~~~ly~v~~~~~~~n 173 (504)
|+++++|+|.+|+++++|+|+++. + +.. ...+++++. + ..+|++..++++++|+++++|||+++++.++|
T Consensus 12 mI~~ililn~~Gk~~lsK~Y~~~~~~~~~~~~~e~~i~~~~~-r----~~~~i~~~~~~~~vy~~~~~Lyfv~~~~~~eN 86 (153)
T 3tjz_C 12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTH-R----TDSEIALLEGLTVVYKSSIDLYFYVIGSSYEN 86 (153)
T ss_dssp CEEEEEEECTTSCEEEEEECSSSSCSHHHHHHHHHHHHHHHS-S----CCCCEEEETTEEEEEEECSSCEEEEEEETTSC
T ss_pred HheEEEEECCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHh-C----CCCCEEEECCEEEEEEEECCEEEEEEEcCCCC
Confidence 599999999999999999999863 2 232 334555542 2 23799999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhc-ccccHHHHHhhHHHHHHHHHHHHhCCcccccCHHHHHHhhhccC
Q psy918 174 IALVFVFLNKIVRVFTEYF-KEIEEESIRDNFVVIYELLDELIDFGYPQTTDSKILQEYITQEG 236 (504)
Q Consensus 174 ~l~~~~~L~~i~~vl~~y~-~~l~e~~i~~n~~~i~~lldEiid~G~p~~t~~~~l~~~i~~~~ 236 (504)
+++++++||+++++|++|| |.++|++|++||+.+|++||||+|+|+||+||++.+...+...+
T Consensus 87 el~ile~L~~~ve~l~~yf~~~v~E~~I~~Nf~~vy~lLDE~id~G~~~eT~~~~I~~~v~~~~ 150 (153)
T 3tjz_C 87 ELMLMTVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGGVILESDPQQVVHRVALRG 150 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHHHTC----
T ss_pred hHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHcCCEeeeCCHHHHHHHHhccc
Confidence 9999999999999999999 89999999999999999999999999999999999999887654
No 10
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.40 E-value=6.5e-14 Score=146.96 Aligned_cols=120 Identities=28% Similarity=0.430 Sum_probs=87.7
Q ss_pred ccccccCCCccccccccccccCeEEeCCeEEEEEeeCCEEEEEEecCCCCeeee------------------cccccccc
Q psy918 2 GVIEKFMPLPHDEKKRRECLTLSLQTSDCTFATSNIKPLSVVSLPRRMPTLRLV------------------SHEPGRNN 63 (504)
Q Consensus 2 ~~~~~f~~~~~~~~~~~~~~~Pv~~~~~~~~~~i~~~~l~~v~~t~~n~~~~~v------------------~ee~ir~n 63 (504)
++++.|..+ +.+..+.+..+|++..+++.|+|+++++|||+|+++.|.|++++ +|+.|++|
T Consensus 28 ~~~~~f~~~-v~~~~~~~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~~le~L~~~v~~l~~yf~~v~E~~I~~N 106 (423)
T 1w63_M 28 SEVEHFMPI-LMEKEEEGMLSPILAHGGVRFMWIKHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDN 106 (423)
T ss_dssp TTHHHHHHH-HHHHHHTSCCCSEEEETTEEEEEEEETTEEEEEEESSCCCTHHHHHHHHHHHHHHHHHSSCCSHHHHHHH
T ss_pred HHHHHHHHH-HhhccccCCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHh
Confidence 356777777 77553323578999999999999999999999999999999998 89999999
Q ss_pred ----------------------------cccccccceec-CCCCcceecccccCCCC-----CchhhhhheeeeEEEeCC
Q psy918 64 ----------------------------IHTGRTQAEIQ-PRIPMAVTNAVSWPNNN-----NSILFIMSASALYILDVK 109 (504)
Q Consensus 64 ----------------------------i~~~~~~~~~~-~~~~~~~t~~v~Wr~~g-----Neif~dv~i~~~~i~~~~ 109 (504)
|+++++.++.. .++|++++++++||++| ||||+||.++..++++++
T Consensus 107 f~~vy~lLDE~id~G~~~~t~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~i~wr~~g~~~~~nei~vdV~E~v~~~~~~~ 186 (423)
T 1w63_M 107 FVIIYELLDELMDFGYPQTTDSKILQEFITQEGHKLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLDVIEAVNLLVSAN 186 (423)
T ss_dssp HHHHHHHHHHHCSSSSCCCCCSTTTTTTCCSCCCCCCCC-----------CCSSCSSCCCSSCEEEEEEEEEEEEEEETT
T ss_pred HHHHHHHHHHHhcCCEEeecCHHHHHHhhcCCCccccccccCCcccccCCCCccccCCccccceEEEEEEEEEEEEECCC
Confidence 33344332211 15677889999999998 999999988888999999
Q ss_pred CCeeeeeecccCcc
Q psy918 110 GKVLISRNYRGDVE 123 (504)
Q Consensus 110 G~vl~~r~y~~~~~ 123 (504)
|.++.+ .-.|.+.
T Consensus 187 G~v~~~-eV~G~I~ 199 (423)
T 1w63_M 187 GNVLRS-EIVGSIK 199 (423)
T ss_dssp TEEEEE-EEEEEEE
T ss_pred CCEEEE-EEEEEEE
Confidence 999877 5555543
No 11
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Probab=99.37 E-value=1.4e-13 Score=144.93 Aligned_cols=118 Identities=17% Similarity=0.264 Sum_probs=87.4
Q ss_pred cccccCCCccccccccccccCeEEeCCeEEEEEeeCCEEEEEEecCCCCeeee------------------cccccccc-
Q psy918 3 VIEKFMPLPHDEKKRRECLTLSLQTSDCTFATSNIKPLSVVSLPRRMPTLRLV------------------SHEPGRNN- 63 (504)
Q Consensus 3 ~~~~f~~~~~~~~~~~~~~~Pv~~~~~~~~~~i~~~~l~~v~~t~~n~~~~~v------------------~ee~ir~n- 63 (504)
.++.|+.+ +...++ ...+|++..+++.|+|+++++|||+|+++.|.|++++ +|+.|++|
T Consensus 28 ~~~~f~~~-v~~~~~-~~~~~ii~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~~le~L~~~v~vl~~yf~~v~E~~I~~Nf 105 (435)
T 2vgl_M 28 AVDAFRVN-VIHARQ-QVRSPVTNIARTSFFHVKRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNF 105 (435)
T ss_dssp HHHHHHHH-TTTCSS-CCCCSEEEETTEEEEEEEETTEEEEEEESSCCCHHHHHHHHHHHHHHHHHHHSSCCHHHHHHTH
T ss_pred HHHHHHHH-Hhcccc-CCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHHHHHHHHHHHHHHHHHHHhccCHHHHHHhH
Confidence 45778777 776543 2578999999999999999999999999999999998 89999999
Q ss_pred ---------------------------cccccccce-----ecCCCCcceecccccCCCC-----CchhhhhheeeeEEE
Q psy918 64 ---------------------------IHTGRTQAE-----IQPRIPMAVTNAVSWPNNN-----NSILFIMSASALYIL 106 (504)
Q Consensus 64 ---------------------------i~~~~~~~~-----~~~~~~~~~t~~v~Wr~~g-----Neif~dv~i~~~~i~ 106 (504)
|+++++... ...++|++++++++||++| ||||+||.++..+++
T Consensus 106 ~~vy~lLDE~id~G~~~~t~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~wr~~gi~~~~nei~vdV~E~v~~~~ 185 (435)
T 2vgl_M 106 VLIYELLDEILDFGYPQNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLM 185 (435)
T ss_dssp HHHHHHHHHHEETTEECCCCHHHHGGGCCCCCCCCC-----------------CCSSCSCCCCSSCEEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHhcCCEEEecCHHHHHHHhccccccccccccccccccccccccccccccccCCcCcceEEEEEEEEEEEEE
Confidence 344443221 1235678899999999998 999999988888999
Q ss_pred eCCCCeeeeeecccCcc
Q psy918 107 DVKGKVLISRNYRGDVE 123 (504)
Q Consensus 107 ~~~G~vl~~r~y~~~~~ 123 (504)
+++|.++.+ .-.|.+.
T Consensus 186 ~~~G~v~~~-eV~G~I~ 201 (435)
T 2vgl_M 186 SPQGQVLSA-HVSGRVV 201 (435)
T ss_dssp CTTCCEEEE-EEEEEEE
T ss_pred cCCCCEEEE-EEEEEEE
Confidence 999999987 5555543
No 12
>3g9h_A Suppressor of yeast profilin deletion; SYP1, MU, adaptor, endocytosis, phosphoprotein; HET: 1PG; 2.80A {Saccharomyces cerevisiae}
Probab=98.71 E-value=9.7e-06 Score=80.40 Aligned_cols=209 Identities=18% Similarity=0.257 Sum_probs=132.4
Q ss_pred cceEEEEEEEeEEEEEccCCceEEEEEEEEEEEEEEeCC-------CCeEEEEecCcccccccCCCCCCceeeccccccc
Q psy918 264 KNEVFLDVIESVNLLANSNGNVLRSEIVGAIKMRVYLSG-------MPELRLGLNDKVLFESTGRGKSKSVELEDVKFHQ 336 (504)
Q Consensus 264 ~nEI~vdV~E~v~~~~~~~G~v~~~~V~G~I~~ks~LsG-------~P~~~l~Ln~~~~~~~~~~~~~~~i~l~d~~fH~ 336 (504)
.-++-..|.|.||+.+.. |.+.++.|.|+|.+. |..| -+.+.+.|++-..++.. +-+-+|-.
T Consensus 67 ~pGLnASI~E~VNA~Fkg-g~~tk~~v~GEiaLs-y~~~~~s~~p~p~~l~fRL~N~~~Lekv---------~pN~~fv~ 135 (328)
T 3g9h_A 67 QFGLNASIAEVLNASFKD-GMLQNSQLIGEIALN-YLPNSVMNSPLPIGINLRINNGAKFEKV---------ILNQAFIE 135 (328)
T ss_dssp CCEEEEEEEEEEEEEEET-TEEEEEEEEEEEEEE-EECCSSSCCCCCSEEEEEEETGGGEEEE---------EECTTTEE
T ss_pred CCceeEEEEEEEEEEEEC-CcEEEEEEEEEEEEe-cCCCccccCCCCccEEEEecCcchhhee---------eCCHHHhc
Confidence 457889999999999964 678899999998775 4444 24588888764433221 11112222
Q ss_pred cccccCcCCCceEEEeCC---CCceeEEEEEecCCCCCceEEEEEEE-ecccEEEEEEEEeeccCCC---ccccceEEEE
Q psy918 337 CVRLSRFENDRTISFIPP---DGEFELMSYRLNTHVKPLIWIESVIE-RFVHSRVEYMIKAKSQFKR---RSTANNVEIV 409 (504)
Q Consensus 337 cV~~~~f~~~r~i~F~PP---dG~F~Lm~Yr~~~~~~~P~~i~~~~~-~~~~~~le~~l~l~~~~~~---~~~~~~v~I~ 409 (504)
++.- +.-.|.++ ...-.+|+|+++. ...|+.+.+.-. +.....+-+..++.+.++. ....+||.+.
T Consensus 136 ~~~~------~eF~vn~~~L~sktv~~lKYqVs~-~~~PL~l~p~WK~E~~qtsliI~Yk~NP~~~~~~~~~~L~Nv~~~ 208 (328)
T 3g9h_A 136 RVAP------EEFKVNPSFIDSRTLGAIKYSIKE-PIAPIVIHPVWRFESHQASVVLTVKMSPSLPDEISQIVIEDLVVF 208 (328)
T ss_dssp EEET------TEEEECTTTTBTCEEEEEEEEEES-CCCSEEEEEEEEECSSEEEEEEEEEECTTSCTTCCEEEEEEEEEE
T ss_pred cCCC------CCEEEchHHhcccceeeEEEEECC-CCCCeEEEeeeecCCCeeEEEEEEEECCCCcCcCCCceeeeEEEE
Confidence 2221 11222221 1225679999975 667887776422 3333445555556666765 5578999999
Q ss_pred ecCCCCCCCCeEEeeeeEEEEeCCCcEEEEEece-e--cCCce-EEEEEEEEecCCCCCCCCCCCCEEEEEEECCc----
Q psy918 410 IPVPADADSPKFKTTIGSVKYTPEQSAITWTIKS-F--PGGKE-YLMRAHFGLPSVENEDAEGKPPIQVKFEIPYF---- 481 (504)
Q Consensus 410 iP~P~~~~~~~~~~s~G~~~~~~~~~~lvW~I~k-~--~g~~~-~~l~~~~~l~s~~~~~~~~~~pi~v~F~ip~~---- 481 (504)
+|+... .++-..+.-.+.|..+++.+.|+|+. + ..+.+ ..|.|+|..... . ......+.++|++...
T Consensus 209 V~ldGa--~ats~qskP~gtwn~e~~ri~Wkl~e~l~l~~~g~~gkLiARf~~~g~-~--~~~~~gV~akF~~~~~~~~~ 283 (328)
T 3g9h_A 209 VNIDGA--NATSALSKPQGSFSKEKKRITWRFKEPVVLTRNGEGQRLIARFITDGL-A--HESAKGVITKFTISETDNVA 283 (328)
T ss_dssp EEBCSS--CEEEEEESSSCCBCSSSCEEEEECSSCEEEETTCCCEEEEEEEEESSC-C--CBCSSCEEEEEEECCCSCSS
T ss_pred EEeCCC--ceeEEEecCCceeccccCEEEEECCCCcccccCCCCCeEEEEEEcCCC-C--CCCCCcEEEEEEEeCCCccc
Confidence 999652 22222333456788999999999987 3 32223 679999988322 1 1122239999999865
Q ss_pred -----cccceEEEEEEeee
Q psy918 482 -----TTSGIQVRYLKIIE 495 (504)
Q Consensus 482 -----t~SGl~V~~l~v~~ 495 (504)
.-|||.|......+
T Consensus 284 ~~~~~~gsgi~i~~~~~~~ 302 (328)
T 3g9h_A 284 LPHSGAGSGITLTCQELDE 302 (328)
T ss_dssp CTTTTCSCCCEEEEEEESS
T ss_pred ccccccCCceeEEeccccc
Confidence 46899998886654
No 13
>1i31_A Clathrin coat assembly protein AP50; beta-sandwich, peptide-binding site, protein-peptide complex, clathrin adaptor; 2.50A {Rattus norvegicus} SCOP: b.2.7.1 PDB: 1bw8_A 2pr9_A 3h85_A 1bxx_A 1hes_A 1h6e_A
Probab=97.95 E-value=2.2e-06 Score=85.95 Aligned_cols=64 Identities=22% Similarity=0.347 Sum_probs=32.8
Q ss_pred ccccccccccccc-----eecCCCCcceecccccCCCC-----CchhhhhheeeeEEEeCCCCeeeeeecccCcc
Q psy918 59 PGRNNIHTGRTQA-----EIQPRIPMAVTNAVSWPNNN-----NSILFIMSASALYILDVKGKVLISRNYRGDVE 123 (504)
Q Consensus 59 ~ir~ni~~~~~~~-----~~~~~~~~~~t~~v~Wr~~g-----Neif~dv~i~~~~i~~~~G~vl~~r~y~~~~~ 123 (504)
.+|+-|++++... +.+.++|+++|++++||++| |||||||.++..++++++|.++.+ +-.|.+.
T Consensus 7 ~Lk~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~WR~~gi~y~~NEi~vdV~E~v~~~i~~~G~v~~~-eV~G~I~ 80 (314)
T 1i31_A 7 ALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSA-HVSGRVV 80 (314)
T ss_dssp -------------------------------CTTSCSCCCCSSCEEEEEEEEEEEEEECSSCCEEEE-EEEEEEE
T ss_pred HHHHhhcCCCeeccccccccccCCCccccCCCCCCccCCccccceEEEEEEEEEEEEECCCCCEEEE-EEEEEEE
Confidence 3444466665443 23457889999999999999 999999988888999999999987 5555543
No 14
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=97.76 E-value=4.2e-06 Score=74.11 Aligned_cols=58 Identities=9% Similarity=-0.128 Sum_probs=49.9
Q ss_pred cccccCCCccccccccccccCeEEeCCeEEEEEeeCCEEEEEEecCCCCeeee------------------cccccccc
Q psy918 3 VIEKFMPLPHDEKKRRECLTLSLQTSDCTFATSNIKPLSVVSLPRRMPTLRLV------------------SHEPGRNN 63 (504)
Q Consensus 3 ~~~~f~~~~~~~~~~~~~~~Pv~~~~~~~~~~i~~~~l~~v~~t~~n~~~~~v------------------~ee~ir~n 63 (504)
.++.|+.+ +...+ +..+|++..+|+.|+|+++++|||+|+++.|.|++++ +|++|++|
T Consensus 31 ~~~~f~~~-v~~~~--~~~~~~~~~~~~~~vy~~~~~Lyfv~~~~~~~N~l~~le~L~~~ve~l~~yf~~v~E~~I~~N 106 (142)
T 2vgl_S 31 LIEEVHAV-VTVRD--AKHTNFVEFRNFKIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFN 106 (142)
T ss_dssp HHHHHHHH-HHTCC--TTSCSEEEETTEEEEEEEETTEEEEEEECTTSCHHHHHHHHHHHHHHHHHHTTSCCHHHHHHT
T ss_pred HHHHHHHH-HhcCC--CCCCCEEEECCEEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHccCCHHHHHHH
Confidence 45667766 66432 2478999999999999999999999999999999998 89999999
No 15
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=97.60 E-value=1.1e-05 Score=72.70 Aligned_cols=44 Identities=9% Similarity=-0.124 Sum_probs=42.2
Q ss_pred cccCeEEeCCeEEEEEeeCCEEEEEEecCCCCeeee------------------cccccccc
Q psy918 20 CLTLSLQTSDCTFATSNIKPLSVVSLPRRMPTLRLV------------------SHEPGRNN 63 (504)
Q Consensus 20 ~~~Pv~~~~~~~~~~i~~~~l~~v~~t~~n~~~~~v------------------~ee~ir~n 63 (504)
..+|++..+|+.|+|+++++|||+|++++|.|++++ +|++|++|
T Consensus 45 ~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~Nel~~le~L~~~vevl~~yf~~v~E~~I~~N 106 (158)
T 1w63_Q 45 KMCSFLEWRDLKVVYKRYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFN 106 (158)
T ss_dssp SSCSEEEETTEEEEEEEETTEEEEEEECSSSCHHHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred CCCCeEEECCEEEEEEEECCEEEEEEecCCCCHHHHHHHHHHHHHHHHHHHccCCHHHHHHh
Confidence 468999999999999999999999999999999998 89999999
No 16
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A
Probab=97.03 E-value=0.00023 Score=63.58 Aligned_cols=42 Identities=7% Similarity=-0.087 Sum_probs=40.5
Q ss_pred cCeEEeCCeEEEEEeeCCEEEEEEecCCCCeeee-------------------cccccccc
Q psy918 22 TLSLQTSDCTFATSNIKPLSVVSLPRRMPTLRLV-------------------SHEPGRNN 63 (504)
Q Consensus 22 ~Pv~~~~~~~~~~i~~~~l~~v~~t~~n~~~~~v-------------------~ee~ir~n 63 (504)
+|++..+|++|+|+++++|||+++++.|.|++++ +|++|++|
T Consensus 57 ~~i~~~~~~~~vy~~~~~Lyfv~~~~~~eNel~ile~L~~~ve~l~~yf~~~v~E~~I~~N 117 (153)
T 3tjz_C 57 SEIALLEGLTVVYKSSIDLYFYVIGSSYENELMLMTVLNCLFDSLSQMLRKNVEKRALLEN 117 (153)
T ss_dssp CCEEEETTEEEEEEECSSCEEEEEEETTSCHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHT
T ss_pred CCEEEECCEEEEEEEECCEEEEEEEcCCCChHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 6999999999999999999999999999999988 89999999
No 17
>3l81_A AP-4 complex subunit MU-1; immunoglobulin-like beta-sandwich, coated PIT, golgi apparat membrane, phosphoprotein, protein transport, transport; 1.60A {Homo sapiens}
Probab=95.74 E-value=0.0028 Score=62.85 Aligned_cols=48 Identities=15% Similarity=0.259 Sum_probs=26.1
Q ss_pred CCCCcceeccc-ccCCCC---CchhhhhheeeeEEEeCCCCeeeeeecccCcc
Q psy918 75 PRIPMAVTNAV-SWPNNN---NSILFIMSASALYILDVKGKVLISRNYRGDVE 123 (504)
Q Consensus 75 ~~~~~~~t~~v-~Wr~~g---Neif~dv~i~~~~i~~~~G~vl~~r~y~~~~~ 123 (504)
..+++|++.+| +||+.. |||||||.++..++++++|.++.+ +..|.+.
T Consensus 12 ~~~~~a~~~pv~~wr~~~~~knEi~vdV~E~v~~~~~~~G~v~~~-eV~G~I~ 63 (301)
T 3l81_A 12 VAPSSAASRPVLSSRSDQSQKNEVFLDVVERLSVLIASNGSLLKV-DVQGEIR 63 (301)
T ss_dssp ---------------------CEEEEEEEEEEEEEECTTSCEEEE-EEEEEEE
T ss_pred ccCchhhcCcccccccccCCcceEEEEEEEEEEEEECCCCCEEEE-EEEEEEE
Confidence 35667888877 999766 999999988888999999999988 5555543
No 18
>4en2_M AP-1 complex subunit MU-1; human immunodeficiency virus 1, HIV, NEF, antigen presentation, HOST defense, adaptor protein complex 1, MU1 subunit; 2.58A {Mus musculus} PDB: 4emz_A
Probab=95.58 E-value=0.0039 Score=60.75 Aligned_cols=37 Identities=22% Similarity=0.480 Sum_probs=31.2
Q ss_pred ccCCCC-----CchhhhhheeeeEEEeCCCCeeeeeecccCcc
Q psy918 86 SWPNNN-----NSILFIMSASALYILDVKGKVLISRNYRGDVE 123 (504)
Q Consensus 86 ~Wr~~g-----Neif~dv~i~~~~i~~~~G~vl~~r~y~~~~~ 123 (504)
|||++| |||||||.++..++++++|.++.+ +..|.+.
T Consensus 1 ~WR~~~i~y~~nei~vdV~E~v~~~~~~~G~v~~~-~v~G~i~ 42 (266)
T 4en2_M 1 SWRSEGIKYRKNEVFLDVIEAVNLLVSANGNVLRS-EIVGSIK 42 (266)
T ss_dssp CCCCTTCCCSSEEEEEEEEEEEEEEECTTSCEEEE-EEEEEEE
T ss_pred CCcCCCCccccCeEEEEEEEEEEEEECCCCCEEEE-EEEEEEE
Confidence 799999 999999988888999999999887 4455433
No 19
>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin adaptor AP-2 complex...; dishevelled, frizzled internalization; 3.50A {Mus musculus}
Probab=92.40 E-value=0.051 Score=55.61 Aligned_cols=41 Identities=17% Similarity=0.281 Sum_probs=32.7
Q ss_pred eccc-cc---CCCC-----CchhhhhheeeeEEEeCCCCeeeeeecccCcc
Q psy918 82 TNAV-SW---PNNN-----NSILFIMSASALYILDVKGKVLISRNYRGDVE 123 (504)
Q Consensus 82 t~~v-~W---r~~g-----Neif~dv~i~~~~i~~~~G~vl~~r~y~~~~~ 123 (504)
...+ || |.+| |||||||.++..++++++|.++.+ +..|.+.
T Consensus 102 s~~~~~~~~~~~~gi~y~knEi~vdV~E~v~~~~~~~G~v~~~-eV~G~I~ 151 (385)
T 3ml6_A 102 SPQPPPYHELEFGGSGGSRNELFLDVLESVNLLMSPQGQVLSA-HVSGRVV 151 (385)
T ss_dssp -CCCCCCEEBCSSSBCCCCCEEEEEEEEEEEEEECTTSCEEEE-EEEEEEE
T ss_pred CCCCCCchhccccCCccccceEEEEEEEEEEEEECCCCCEEEE-EEEEEEE
Confidence 3456 89 7788 999999988888999999999988 5555543
No 20
>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}
Probab=91.81 E-value=1.1 Score=40.47 Aligned_cols=83 Identities=13% Similarity=0.194 Sum_probs=57.8
Q ss_pred CCCCeeeeeecccCcchhHHHHHHHHhhcccccCCCCCEEEeCCEEEEEEEeCCEEEEEEecCCccHHHHHHHHHHHHHH
Q psy918 108 VKGKVLISRNYRGDVEMGVIEKFMPLLMEKEEEGMLTPLLQTSDCTFAYIKYNNLFIVSTTKKNANIALVFVFLNKIVRV 187 (504)
Q Consensus 108 ~~G~vl~~r~y~~~~~~~~~~~f~~~v~~~~~~~~~~pv~~~~~~~~v~~~~~~ly~v~~~~~~~n~l~~~~~L~~i~~v 187 (504)
++|.++++ .|.... .+ ...+-+.++.+.......-.++.+++.|-|...+++.++|+++.+-.--.++.||..+.+-
T Consensus 62 Arg~tiLA-E~t~~~-gn-f~~va~~iL~kip~~~~r~t~~~~~y~fHyl~~dgl~yl~i~D~~~~rr~aF~FLedI~~e 138 (173)
T 4afi_A 62 ARGTTILA-KHAWCG-GN-FLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVKKR 138 (173)
T ss_dssp EETTEEEE-EEESSC-CC-HHHHHHHHHTTSCSSSEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHHHHH
T ss_pred ECCCEEEE-EccCCC-CC-HHHHHHHHHHhCCCCCCeEEEEECCEEEEEEEECCEEEEEEECCccChhHHHHHHHHHHHH
Confidence 46888888 454322 11 2234444444322111223667899999999999999999999999999999999999888
Q ss_pred HHhhcc
Q psy918 188 FTEYFK 193 (504)
Q Consensus 188 l~~y~~ 193 (504)
+..-+|
T Consensus 139 F~~~yg 144 (173)
T 4afi_A 139 FQTTYG 144 (173)
T ss_dssp HHHHHG
T ss_pred HHHHhc
Confidence 777665
No 21
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A
Probab=90.38 E-value=1.9 Score=39.26 Aligned_cols=83 Identities=13% Similarity=0.202 Sum_probs=56.3
Q ss_pred CCCCeeeeeecccCcchhHHHHHHHHhhcccccCCCCCEEEeCCEEEEEEEeCCEEEEEEecCCccHHHHHHHHHHHHHH
Q psy918 108 VKGKVLISRNYRGDVEMGVIEKFMPLLMEKEEEGMLTPLLQTSDCTFAYIKYNNLFIVSTTKKNANIALVFVFLNKIVRV 187 (504)
Q Consensus 108 ~~G~vl~~r~y~~~~~~~~~~~f~~~v~~~~~~~~~~pv~~~~~~~~v~~~~~~ly~v~~~~~~~n~l~~~~~L~~i~~v 187 (504)
++|.++++. |.... .+ ...+-+.++.+-......-.+..+++.|-|+..+++.++|+++.+-+--.++.||..+.+-
T Consensus 10 Arg~~iLae-~t~~~-gn-f~~ia~~iL~kip~~~~k~s~~~~~y~fHyl~~~gl~yl~i~d~~yp~r~af~fL~~i~~e 86 (189)
T 4b93_A 10 ARGTTILAK-HAWCG-GN-FLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVKKR 86 (189)
T ss_dssp EETTEEEEE-EESSE-EC-HHHHHHHHHTTCCSSSEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHHHHH
T ss_pred EeCCEEEEe-CCCCC-CC-HHHHHHHHHHhCCCCCCeEEEEECCEEEEEEEeCCeEEEEEEcCccCHHHHHHHHHHHHHH
Confidence 368888884 44322 22 2222233333221111223578899999999999999999999999999999999999887
Q ss_pred HHhhcc
Q psy918 188 FTEYFK 193 (504)
Q Consensus 188 l~~y~~ 193 (504)
+..-++
T Consensus 87 F~~~~~ 92 (189)
T 4b93_A 87 FQTTYG 92 (189)
T ss_dssp HHHHHG
T ss_pred HHhhcc
Confidence 776665
No 22
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A
Probab=89.74 E-value=3.1 Score=38.04 Aligned_cols=48 Identities=21% Similarity=0.301 Sum_probs=41.4
Q ss_pred EEEeCCEEEEEEEeCCEEEEEEecCCccHHHHHHHHHHHHHHHHhhcc
Q psy918 146 LLQTSDCTFAYIKYNNLFIVSTTKKNANIALVFVFLNKIVRVFTEYFK 193 (504)
Q Consensus 146 v~~~~~~~~v~~~~~~ly~v~~~~~~~n~l~~~~~L~~i~~vl~~y~~ 193 (504)
.+..+++.|.|...+++.++|+++.+-+.-.++.||..+.+-+..-++
T Consensus 54 s~~~~~y~fhy~~~~gl~~l~i~d~~yp~r~af~fL~~i~~~F~~~~~ 101 (196)
T 2nut_C 54 TLEAGAMTFHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFDEQHG 101 (196)
T ss_dssp EEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEeCCEEEEEEeCCCeEEEEEEcCCcchHHHHHHHHHHHHHHHHhcc
Confidence 567888888899999999999999999999999999998887666444
No 23
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A
Probab=89.21 E-value=2.5 Score=37.84 Aligned_cols=49 Identities=18% Similarity=0.345 Sum_probs=42.6
Q ss_pred CEEEeCCEEEEEEEeCCEEEEEEecCCccHHHHHHHHHHHHHHHHhhcc
Q psy918 145 PLLQTSDCTFAYIKYNNLFIVSTTKKNANIALVFVFLNKIVRVFTEYFK 193 (504)
Q Consensus 145 pv~~~~~~~~v~~~~~~ly~v~~~~~~~n~l~~~~~L~~i~~vl~~y~~ 193 (504)
-.++.++..|-|...+++.|+|+++.+-.-..++.||+.+.+-...-++
T Consensus 86 ~s~~~~~y~fHyl~~ngl~yl~I~D~~yp~r~AF~fLedI~~eF~~~y~ 134 (169)
T 2vx8_A 86 LTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVKKRFQTTYG 134 (169)
T ss_dssp EEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHHHHHHHHHHT
T ss_pred eEEEECCEEEEEEEECCEEEEEEEccccchHHHHHHHHHHHHHHHHHhh
Confidence 3577889988888899999999999999999999999999887777665
No 24
>3cpt_A Mitogen-activated protein kinase kinase 1- interacting protein 1; scaffold, complex, alpha/beta, endosome, membrane, lysosome; 1.90A {Homo sapiens} SCOP: d.110.7.1 PDB: 1sko_A 2zl1_A 1vet_A 1veu_A
Probab=77.85 E-value=23 Score=30.55 Aligned_cols=92 Identities=14% Similarity=0.166 Sum_probs=63.0
Q ss_pred eeeeEEEeCCCCeeeeeecccCcc---h-hHHHHHHHHhhcccc--cCCCCCEE-EeCCEEEEEEEeCCEEEEEEecCCc
Q psy918 100 ASALYILDVKGKVLISRNYRGDVE---M-GVIEKFMPLLMEKEE--EGMLTPLL-QTSDCTFAYIKYNNLFIVSTTKKNA 172 (504)
Q Consensus 100 i~~~~i~~~~G~vl~~r~y~~~~~---~-~~~~~f~~~v~~~~~--~~~~~pv~-~~~~~~~v~~~~~~ly~v~~~~~~~ 172 (504)
+.+++|.|++|-+|+.-...+... + +.+..|....-+.++ -++...++ .++++.+|+.....+++..++..+.
T Consensus 38 l~aI~ItDrDGVpi~kv~~~~~~e~~~r~s~lsTf~~A~dQ~sKLglGknksII~~Y~~yqvVq~n~~Plvit~Ias~~a 117 (143)
T 3cpt_A 38 LHAIVVSDRDGVPVIKVANDNAPEHALRPGFLSTFALATDQGSKLGLSKNKSIICYYNTYQVVQFNRLPLVVSFIASSSA 117 (143)
T ss_dssp EEEEEEECTTSCEEEEEECTTSCGGGGSHHHHHHHHHHHHHHHHHTCCCEEEEEEECSSEEEEEEEETTEEEEEEEETTS
T ss_pred eEEEEEECCCCcEEEEecCCCCchhhcccchhhhHHHHHHHHhhcCCCCCceEEEEecCeEEEEEecCCEEEEEEecCCC
Confidence 578999999999998866544222 1 344555443322111 13445555 5778899999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHhh
Q psy918 173 NIALVFVFLNKIVRVFTEY 191 (504)
Q Consensus 173 n~l~~~~~L~~i~~vl~~y 191 (504)
|.-.++++=+.+..+|.+.
T Consensus 118 NtG~Il~Le~~L~p~l~~L 136 (143)
T 3cpt_A 118 NTGLIVSLEKELAPLFEEL 136 (143)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CchhHhhhHHHHHHHHHHH
Confidence 9988887766666666553
No 25
>1nrj_A Signal recognition particle receptor alpha subunit homolog; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: d.110.4.4
Probab=73.12 E-value=37 Score=29.19 Aligned_cols=72 Identities=19% Similarity=0.205 Sum_probs=46.3
Q ss_pred heeeeEEEeCCCCeeeeee-cccCcchhHHHHHHHHhhccccc--C---------CCCCEEEe-------CCEEEEE--E
Q psy918 99 SASALYILDVKGKVLISRN-YRGDVEMGVIEKFMPLLMEKEEE--G---------MLTPLLQT-------SDCTFAY--I 157 (504)
Q Consensus 99 ~i~~~~i~~~~G~vl~~r~-y~~~~~~~~~~~f~~~v~~~~~~--~---------~~~pv~~~-------~~~~~v~--~ 157 (504)
|++.+.|+.++|++|..-. +......+.+..|...+++.... . -.-+++.+ ++..+.| -
T Consensus 1 M~dQf~IFTp~GqVLy~yn~l~kKf~e~qiN~fIS~LitsP~~~~~~~s~~~~~~~k~~~~~i~~~~k~~~~f~~~~~~s 80 (158)
T 1nrj_A 1 MFDQLAVFTPQGQVLYQYNCLGKKFSEIQINSFISQLITSPVTRKESVANANTDGFDFNLLTINSEHKNSPSFNALFYLN 80 (158)
T ss_dssp CCCEEEEECTTCBEEEEEETTSCCCCHHHHHHHHHHHHHSCCCGGGEECSGGGTTCCEEEEECC--------CEEEEEEE
T ss_pred CcceEEEeccCceEEEEecccCcchHHHHHHHHHHHHhcCCcccccccccccccccceeeEeecccccCCCCeeEEEEec
Confidence 5889999999999998733 12234456788888888765321 0 02256666 6777766 4
Q ss_pred EeCCEEEEEEecC
Q psy918 158 KYNNLFIVSTTKK 170 (504)
Q Consensus 158 ~~~~ly~v~~~~~ 170 (504)
+.-.||||++--.
T Consensus 81 kQP~LyfVvtyae 93 (158)
T 1nrj_A 81 KQPELYFVVTFAE 93 (158)
T ss_dssp ETTEEEEEEEESS
T ss_pred CCCcEEEEEEecc
Confidence 4567998887643
No 26
>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A
Probab=72.59 E-value=42 Score=28.73 Aligned_cols=48 Identities=15% Similarity=0.150 Sum_probs=39.0
Q ss_pred EEEeCCEEEEEE-EeCCEEEEEEecCCccHHHHHHHHHHHHHHHHhhcc
Q psy918 146 LLQTSDCTFAYI-KYNNLFIVSTTKKNANIALVFVFLNKIVRVFTEYFK 193 (504)
Q Consensus 146 v~~~~~~~~v~~-~~~~ly~v~~~~~~~n~l~~~~~L~~i~~vl~~y~~ 193 (504)
.++.+++.+-|. ..+++.++|+++.+-+--.++.||+.+.+-...-++
T Consensus 62 sv~~~~y~fH~~~~~~gl~~l~i~D~~yp~rvAF~~L~~i~~eF~~~y~ 110 (144)
T 3bw6_A 62 SIEEGNYIGHVYARSEGICGVLITDKEYPVRPAYTLLNKILDEYLVAHP 110 (144)
T ss_dssp EEEETTEEEEEEECTTSEEEEEEEETTSCHHHHHHHHHHHHHHHHHHSC
T ss_pred EEEeCCEEEEEEEecCCEEEEEEECCCCChhHHHHHHHHHHHHHHHHcc
Confidence 567788877776 779999999999999999999999888776655444
No 27
>2fh5_A Signal recognition particle receptor alpha subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Homo sapiens} SCOP: d.110.4.4 PDB: 2go5_1
Probab=65.98 E-value=49 Score=29.81 Aligned_cols=93 Identities=16% Similarity=0.172 Sum_probs=58.1
Q ss_pred heeeeEEEeCCCCeeeeeecccCcchhHHHHHHHHhhcccccCCCCCEEEeCCEEEEEEEe--CCEEEEEEecCCccHHH
Q psy918 99 SASALYILDVKGKVLISRNYRGDVEMGVIEKFMPLLMEKEEEGMLTPLLQTSDCTFAYIKY--NNLFIVSTTKKNANIAL 176 (504)
Q Consensus 99 ~i~~~~i~~~~G~vl~~r~y~~~~~~~~~~~f~~~v~~~~~~~~~~pv~~~~~~~~v~~~~--~~ly~v~~~~~~~n~l~ 176 (504)
|...+.|++..|=||-+..-.+......+.++.+.++-.. ....+.+..+++..=+... -+|.||++-..--....
T Consensus 10 ~~D~~~IfTkGGvVLWs~~~~~~~~~~~IN~LIr~VlLEE--R~~~~~y~~d~ytlkW~l~NEl~LVFVvVYQ~iL~L~Y 87 (185)
T 2fh5_A 10 MVDFFTIFSKGGLVLWCFQGVSDSCTGPVNALIRSVLLQE--RGGNNSFTHEALTLKYKLDNQFELVFVVGFQKILTLTY 87 (185)
T ss_dssp SCSEEEEEETTSBEEEEEBTTTBSCCCHHHHHHHHTGGGC---------CCCCCEEEEEEETTTTEEEEEEESCGGGHHH
T ss_pred ceeEEEEEeCCeEEEEeecCCcccccchHHHHHHHhhhcc--ccCCCceeEcCeEEEEEEeccCCEEEEEEEcccccchH
Confidence 4677889999998988732222222345777777665432 1223567788876555544 46899998776566677
Q ss_pred HHHHHHHHHHHHHhhcc
Q psy918 177 VFVFLNKIVRVFTEYFK 193 (504)
Q Consensus 177 ~~~~L~~i~~vl~~y~~ 193 (504)
+=+||..+...+.+-++
T Consensus 88 iD~LL~~v~~~Fv~~Y~ 104 (185)
T 2fh5_A 88 VDKLIDDVHRLFRDKYR 104 (185)
T ss_dssp HHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77788888777777664
No 28
>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}
Probab=62.99 E-value=29 Score=29.89 Aligned_cols=92 Identities=18% Similarity=0.210 Sum_probs=56.3
Q ss_pred hheeeeEEEeCCCCeeeeeecccCc----c-hh----------HHHHHHHHhhcccccCCCCCEEEeCCE-EEEEEEeCC
Q psy918 98 MSASALYILDVKGKVLISRNYRGDV----E-MG----------VIEKFMPLLMEKEEEGMLTPLLQTSDC-TFAYIKYNN 161 (504)
Q Consensus 98 v~i~~~~i~~~~G~vl~~r~y~~~~----~-~~----------~~~~f~~~v~~~~~~~~~~pv~~~~~~-~~v~~~~~~ 161 (504)
|++..++|+++.|..|..|.|.... + .+ .+..+..++. +......--.+.++.. -++|.-..+
T Consensus 1 M~i~~~~Ii~k~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~~~Sl~~i~~kls-p~~~~~~~~~~~t~~ykl~~~~T~Tg 79 (145)
T 2j3t_C 1 MTVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMS-PLDMKDGFLSFQTSRYKLHYYETPTG 79 (145)
T ss_dssp -CEEEEEEECTTSCEEEEEESSCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHC-SSCCSSCEEEEECSSCEEEEEECTTS
T ss_pred CeEEEEEEEeCCCCEEEeeeecCCCcCCCCcchHHHHHHHHHHHHHHHHHHhC-CCCCCCceEEEecCCEEEEEEEcCCC
Confidence 5678899999999999999996431 1 11 1334444432 1111111134456665 457788889
Q ss_pred EEEEEEecCCccHHHHHHHHHHHH-HHHHhhc
Q psy918 162 LFIVSTTKKNANIALVFVFLNKIV-RVFTEYF 192 (504)
Q Consensus 162 ly~v~~~~~~~n~l~~~~~L~~i~-~vl~~y~ 192 (504)
+-||++++..++. +=++|+++. ++.-+|.
T Consensus 80 iKFvl~td~~~~~--i~~~l~~iy~~lYv~~v 109 (145)
T 2j3t_C 80 IKVVMNTDLGVGP--IRDVLHHIYSALYVEFV 109 (145)
T ss_dssp CEEEEEECTTCCC--CHHHHHHHHHTTHHHHT
T ss_pred CEEEEEecCCcch--HHHHHHHHHHHHHHHHH
Confidence 9999999876543 335666666 5655554
No 29
>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=61.56 E-value=70 Score=29.56 Aligned_cols=25 Identities=20% Similarity=0.546 Sum_probs=21.4
Q ss_pred hheeeeEEEeCCCCeeeeeecccCc
Q psy918 98 MSASALYILDVKGKVLISRNYRGDV 122 (504)
Q Consensus 98 v~i~~~~i~~~~G~vl~~r~y~~~~ 122 (504)
|++..++|+|+.|..+..|.|....
T Consensus 1 M~i~sl~IiNk~GglIY~r~~~~~~ 25 (219)
T 3cue_A 1 MAIETILVINKSGGLIYQRNFTNDE 25 (219)
T ss_dssp -CEEEEEEECTTSCEEEEEECSSCC
T ss_pred CeeEEEEEEeCCCCEEeehhhccCc
Confidence 6789999999999999999997544
No 30
>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}
Probab=58.77 E-value=21 Score=32.63 Aligned_cols=48 Identities=15% Similarity=0.288 Sum_probs=40.8
Q ss_pred EEEeCCEEEE-EEEeCCEEEEEEecCCccHHHHHHHHHHHHHHHHhhcc
Q psy918 146 LLQTSDCTFA-YIKYNNLFIVSTTKKNANIALVFVFLNKIVRVFTEYFK 193 (504)
Q Consensus 146 v~~~~~~~~v-~~~~~~ly~v~~~~~~~n~l~~~~~L~~i~~vl~~y~~ 193 (504)
.+..+++.|- |...+++.++|+++.+-+--.++.||+.+.+-...-++
T Consensus 59 s~~~~~y~fH~y~~~~gl~yl~itd~~yp~r~AF~fL~ei~~eF~~~~~ 107 (199)
T 3kyq_A 59 SVKEQEYLCHVYVRSDSLAGVVIADSEYPSRVAFTLLEKVLDEFSKQVD 107 (199)
T ss_dssp EEECSSEEEEEEECTTSEEEEEEEETTSCHHHHHHHHHHHHHHHHHHSC
T ss_pred EEEeCCEEEEEEEecCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 5667777776 88889999999999999999999999999887776665
No 31
>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A
Probab=50.32 E-value=78 Score=26.93 Aligned_cols=91 Identities=7% Similarity=0.050 Sum_probs=53.0
Q ss_pred hhh-eeeeEEEeCCCCeeeeeecccCcch-----h----------HHHHHHHHhhcccccCCCCCEEE---eCCE-EEEE
Q psy918 97 IMS-ASALYILDVKGKVLISRNYRGDVEM-----G----------VIEKFMPLLMEKEEEGMLTPLLQ---TSDC-TFAY 156 (504)
Q Consensus 97 dv~-i~~~~i~~~~G~vl~~r~y~~~~~~-----~----------~~~~f~~~v~~~~~~~~~~pv~~---~~~~-~~v~ 156 (504)
-|+ +..+.|++++|..|..|.|...... . .++.+.+...+ ....-... .++. .+.|
T Consensus 2 ~M~~i~~~~Ii~~~~~ply~~~~~~~~~~~~~~~~~l~~~~i~hs~ldiv~~~~~~----~~~~~l~~~~~~~~y~v~~~ 77 (142)
T 2j3w_A 2 EMSGSFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWL----SNNMYLKTVDKFNEWFVSAF 77 (142)
T ss_dssp CCCCCEEEEEECTTSCEEEEEEECCSCCGGGHHHHHHHHHHHHHHHHHHHHHHGGG----CSCSEEEEEEEETTEEEEEE
T ss_pred ccceEEEEEEEeCCCCEEEEEecCCcCcCCccHHHHHHHHHHHHHHHHHHHHhcCC----CCcceeEeeecccceEEEEE
Confidence 366 6788999999999999999653211 0 11112111111 11111222 2333 3677
Q ss_pred EEeCCEEEEEEecCCccHHHHHHHHHHHHHHHHhhc
Q psy918 157 IKYNNLFIVSTTKKNANIALVFVFLNKIVRVFTEYF 192 (504)
Q Consensus 157 ~~~~~ly~v~~~~~~~n~l~~~~~L~~i~~vl~~y~ 192 (504)
..-.++-||++++.. +.-.+-.+|+++.++.-+|+
T Consensus 78 ~T~tg~Kfvl~~d~~-~~~~i~~~~~~iy~~Y~~~v 112 (142)
T 2j3w_A 78 VTAGHMRFIMLHDVR-QEDGIKNFFTDVYDLYIKFA 112 (142)
T ss_dssp ECTTCCEEEEEESSC-CHHHHHHHHHHHHHHHHHHH
T ss_pred EcCCCcEEEEEeCCC-CcHHHHHHHHHHHHHHHHHh
Confidence 878899999999763 34445567777766666554
No 32
>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=48.19 E-value=39 Score=29.59 Aligned_cols=92 Identities=13% Similarity=0.199 Sum_probs=52.5
Q ss_pred hheeeeEEEeCCCCeeeeeeccc-------Cc----chh----------HHHHHHHHhhcccccCCCCCEEEeCCE-EEE
Q psy918 98 MSASALYILDVKGKVLISRNYRG-------DV----EMG----------VIEKFMPLLMEKEEEGMLTPLLQTSDC-TFA 155 (504)
Q Consensus 98 v~i~~~~i~~~~G~vl~~r~y~~-------~~----~~~----------~~~~f~~~v~~~~~~~~~~pv~~~~~~-~~v 155 (504)
|++.+++|+++.|..|..|.|.. .. ..+ .+..|..++.-.+. ...--.+.++.. -+.
T Consensus 1 M~i~~~~Ii~r~g~~iy~~~~~~~~~~~~~~~~~~~~~~~~~ll~g~~~SL~~i~~kls~~~~-~~~f~~~~T~~ykl~~ 79 (159)
T 3cue_C 1 MGIYSFWIFDRHCNCIFDREWTLASNSASGTINSKQNEEDAKLLYGMIFSLRSITQKLSKGSV-KNDIRSISTGKYRVHT 79 (159)
T ss_dssp CCCCEEEEECSSSCEEECCCC-------------CCHHHHHHHHHHHHHHHHHHHHHSCCSSS-CCCEEEEECSSCBEEE
T ss_pred CeEEEEEEEcCCCceEEeeeeccccccccccccCCCCchHHHHHHHHHHHHHHHHHHhCCCCC-CCCeEEEeeCCEEEEE
Confidence 56888999999999999999953 11 111 13333333321100 011122334444 456
Q ss_pred EEEeCCEEEEEEecCCccHHHHHHHHHHHHH-HHHhhc
Q psy918 156 YIKYNNLFIVSTTKKNANIALVFVFLNKIVR-VFTEYF 192 (504)
Q Consensus 156 ~~~~~~ly~v~~~~~~~n~l~~~~~L~~i~~-vl~~y~ 192 (504)
|.--.++-||++++..++.+ =.+|+++.+ +.-+|.
T Consensus 80 ~eT~TgiKFvl~td~~~~~i--~~~l~~iy~~lYv~yv 115 (159)
T 3cue_C 80 YCTASGLWFVLLSDFKQQSY--TQVLQYIYSHIYVKYV 115 (159)
T ss_dssp ECCSSCCEEEEECCSSSSCT--HHHHHHHHHHHHHHHH
T ss_pred EEeCCCCEEEEEeCCCcchH--HHHHHHHHHHHHHHHH
Confidence 67778999999998765433 356667765 666654
No 33
>2jxc_B Stonin-2, stoned B; endocytosis, calcium, chromosomal rearrangement, cytoplasm, membrane, phosphorylation, polymorphism, proto-oncogene; NMR {Homo sapiens}
Probab=43.66 E-value=6.5 Score=26.12 Aligned_cols=20 Identities=35% Similarity=0.454 Sum_probs=16.9
Q ss_pred cceecccccCCCC---Cchhhhh
Q psy918 79 MAVTNAVSWPNNN---NSILFIM 98 (504)
Q Consensus 79 ~~~t~~v~Wr~~g---Neif~dv 98 (504)
.+++.+++||..+ ||-|-||
T Consensus 6 p~~~e~~Pw~atNPFLde~l~dv 28 (45)
T 2jxc_B 6 PSVTEASPWRATNPFLNETLQDV 28 (45)
T ss_dssp CCCSCCCCSCSSCSSSSTTTSCC
T ss_pred CccccCCCcccCCcchhhhHHhC
Confidence 3678899999999 8888777
No 34
>2wl8_A Peroxisomal biogenesis factor 19; protein transport, biogenesis disorder, zellweger syndrome, membrane, prenylation; 2.05A {Homo sapiens}
Probab=20.69 E-value=1.7e+02 Score=24.46 Aligned_cols=41 Identities=24% Similarity=0.513 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHhhcccc-cHH-HHHhhHHHHHHHHHHHHhCCcc
Q psy918 178 FVFLNKIVRVFTEYFKEI-EEE-SIRDNFVVIYELLDELIDFGYP 220 (504)
Q Consensus 178 ~~~L~~i~~vl~~y~~~l-~e~-~i~~n~~~i~~lldEiid~G~p 220 (504)
++++.+|+..++. ..- +++ .-+.+|..|.+++.+|=+.|.|
T Consensus 65 ~~lv~~I~~~fE~--~~~~D~~~~~~~~~~~i~~Lmq~mQ~~G~P 107 (126)
T 2wl8_A 65 HSVMCKICEQFEA--ETPTDSETTQKARFEMVLDLMQQLQDLGHP 107 (126)
T ss_dssp HHHHHHHHHHHHH--CCTTCCHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHcC--CCCCchhhhHHHHHHHHHHHHHHHHHcCCC
Confidence 4455555555554 222 222 2346788888888888888875
Done!