RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy918
(504 letters)
>d2pr9a1 b.2.7.1 (A:159-435) Second domain of Mu2 adaptin subunit
(ap50) of ap2 adaptor {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 277
Score = 284 bits (728), Expect = 6e-94
Identities = 106/264 (40%), Positives = 154/264 (58%), Gaps = 13/264 (4%)
Query: 253 VSWRSEGIKYRKNEVFLDVIESVNLLANSNGNVLRSEIVGAIKMRVYLSGMPELRLGLND 312
+ WR EGIKYR+NE+FLDV+ESVNLL + G VL + + G + M+ YLSGMPE + G+ND
Sbjct: 1 IGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMND 60
Query: 313 KVLFESTGRG--------KSKSVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYR 364
K++ E G+G +S+ ++D FHQCVRLS+F+++R+ISFIPPDGEFELM YR
Sbjct: 61 KIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYR 120
Query: 365 LNTHVKPLIWIESVIERFVHSRVEYMIKAKSQFKRRSTANNVEIVIPVPADADSPKFKTT 424
+ + ++ +++E + KS FK A +E+ IP P + +
Sbjct: 121 TTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICM 180
Query: 425 IGSVKYTPEQSAITWTIKSFPGGKEYLMRAHFGLPSVENEDAEGKPPIQVKFEIPYFTTS 484
G KY ++AI W IK G KE + A L ++ +PPI + FE+P F S
Sbjct: 181 KGKAKYKASENAIVWKIKRMAGMKESQISAEIELLPTNDKKKWARPPISMNFEVP-FAPS 239
Query: 485 GIQVRYLKIIEK----SGYQALPW 504
G++VRYLK+ E S + + W
Sbjct: 240 GLKVRYLKVFEPKLNYSDHDVIKW 263
>d2vglm2 d.110.4.2 (M:1-141) Mu2 adaptin (clathrin coat assembly
protein AP50) {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 141
Score = 145 bits (366), Expect = 3e-42
Identities = 56/138 (40%), Positives = 93/138 (67%), Gaps = 1/138 (0%)
Query: 101 SALYILDVKGKVLISRNYRGDVEMGVIEKFMPLLMEKEEEGMLTPLLQTSDCTFAYIKYN 160
L+I + KG+VLISR YR D+ ++ F ++ ++ +P+ + +F ++K +
Sbjct: 3 GGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVR-SPVTNIARTSFFHVKRS 61
Query: 161 NLFIVSTTKKNANIALVFVFLNKIVRVFTEYFKEIEEESIRDNFVVIYELLDELIDFGYP 220
N+++ + TK+N N A+VF FL K+ V YF +I EE+I++NFV+IYELLDE++DFGYP
Sbjct: 62 NIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYP 121
Query: 221 QTTDSKILQEYITQEGHK 238
Q +++ L+ +ITQ+G K
Sbjct: 122 QNSETGALKTFITQQGIK 139
>d2vgls_ d.110.4.2 (S:) Sigma2 adaptin (clathrin coat assembly
protein AP17) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 142
Score = 100 bits (251), Expect = 7e-26
Identities = 27/141 (19%), Positives = 59/141 (41%), Gaps = 4/141 (2%)
Query: 101 SALYILDVKGKVLISRNYRG--DVEMGVIEKFMPLLMEKEEEGMLTPLLQTSDCTFAYIK 158
+ I + GK +++ Y D E + + + ++ + T ++ + Y +
Sbjct: 3 RFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKH-TNFVEFRNFKIIYRR 61
Query: 159 YNNLFIVSTTKKNANIALVFVFLNKIVRVFTEYFKEIEEESIRDNFVVIYELLDELIDFG 218
Y L+ N N ++ V V EYF + E + NF +Y ++DE+ G
Sbjct: 62 YAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAG 121
Query: 219 YPQTTD-SKILQEYITQEGHK 238
+ T +K+L++ + + +
Sbjct: 122 EIRETSQTKVLKQLLMLQSLE 142
>d1tvfa2 e.3.1.1 (A:15-315) Pencillin binding protein 4 (PbpD),
N-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Length = 301
Score = 30.2 bits (67), Expect = 0.59
Identities = 12/82 (14%), Positives = 27/82 (32%), Gaps = 6/82 (7%)
Query: 66 TGRTQAEIQPRIPMAVTNAVSWPNNNNSILFIMSASALYILDVKGKVLISRNYRGDVEMG 125
+ QA P+ N + + + ++ + G++L N
Sbjct: 5 SSYAQATNSDVTPVQAANQYGYAGLSAAY----EPTSAVNVSQTGQLLYQYNIDTKWNPA 60
Query: 126 VIEKFMPLL--MEKEEEGMLTP 145
+ K M + +E +G L+
Sbjct: 61 SMTKLMTMYLTLEAVNKGQLSL 82
>d1ldja2 a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 394
Score = 27.0 bits (59), Expect = 5.1
Identities = 28/197 (14%), Positives = 63/197 (31%), Gaps = 17/197 (8%)
Query: 72 EIQPRIPMAVTNAVSWPNNNNSILFIMSASALYILDVKGKVLISRNYRGDVEMGVIEKFM 131
+ ++ AV + N +I + + + G +G E F
Sbjct: 158 PLNKQVTNAVLKLIEKERNGETINTRLISGVVQSYVELGLNEDDAFAKGPTLTVYKESFE 217
Query: 132 PLLMEKEEE---GMLTPLLQTSDCTFAYIKYNN----------LFIVSTTKKNANIALVF 178
+ E T LQ + T K +++ +T+
Sbjct: 218 SQFLADTERFYTRESTEFLQQNPVTEYMKKAEARLLEEQRRVQVYLHESTQDELARKCEQ 277
Query: 179 VFLNKIVRVFTEYFKEIEEESIRDNFVVIYELLDELIDFGYPQTTDSKILQEYITQEGHK 238
V + K + +F F+ + + ++ +Y L+ I G + +L+ +I +G
Sbjct: 278 VLIEKHLEIFHTEFQNLLDADKNEDLGRMYNLVSR-IQDGLGELKK--LLETHIHNQGLA 334
Query: 239 LEIQPRIPMAVTNAVSW 255
I+ A+ + +
Sbjct: 335 A-IEKCGEAALNDPKMY 350
>d1ioua_ d.110.4.1 (A:) Synaptobrevin homolog 1 ykt6 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 140
Score = 26.3 bits (58), Expect = 5.4
Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Query: 154 FAYIKYNNLFIVSTTKKNANIALVFVFLNKIVRVF-TEYFKEIEEESIRDNFVVIYELLD 212
Y + + V T K + + LNKI+ + + KE + N + + LD
Sbjct: 67 HVYARSEGICGVLITDKQYPVRPAYTLLNKILDEYLVAHPKEEWADVTETNDALKMKQLD 126
Query: 213 ELI 215
I
Sbjct: 127 TYI 129
>d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole
carboxamide ribotite isomerase HisA {Streptomyces
coelicolor [TaxId: 1902]}
Length = 239
Score = 26.8 bits (58), Expect = 5.6
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 331 DVKFHQCVRLSRFENDRTISFIPP 354
DV+ Q VRL E+ S+ P
Sbjct: 10 DVRDGQAVRLVHGESGTETSYGSP 33
>d1of5b_ d.17.4.2 (B:) mRNA transport regulator MTR2 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 165
Score = 26.0 bits (57), Expect = 8.9
Identities = 4/35 (11%), Positives = 10/35 (28%)
Query: 430 YTPEQSAITWTIKSFPGGKEYLMRAHFGLPSVENE 464
+ P I + F +L + ++
Sbjct: 32 FNPNNCRIIFNATPFAQATVFLQMWQNQVVQTQHA 66
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.136 0.392
Gapped
Lambda K H
0.267 0.0594 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,851,963
Number of extensions: 87869
Number of successful extensions: 182
Number of sequences better than 10.0: 1
Number of HSP's gapped: 178
Number of HSP's successfully gapped: 14
Length of query: 504
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 415
Effective length of database: 1,185,626
Effective search space: 492034790
Effective search space used: 492034790
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.3 bits)