Query psy9180
Match_columns 491
No_of_seqs 284 out of 1593
Neff 6.8
Searched_HMMs 29240
Date Fri Aug 16 21:00:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9180.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9180hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qkb_A Ribonuclease H1, HS-RNA 99.9 1.2E-21 4.1E-26 178.5 10.3 129 146-275 4-152 (154)
2 3qio_A GAG-POL polyprotein; RN 99.8 2E-21 6.8E-26 176.7 10.8 125 145-274 8-147 (150)
3 3h08_A RNH (ribonuclease H); R 99.8 2.4E-21 8.3E-26 174.7 4.6 124 148-274 3-144 (146)
4 3p1g_A Xenotropic murine leuke 99.8 2.3E-20 8E-25 172.2 9.2 126 148-276 22-158 (165)
5 2kq2_A Ribonuclease H-related 99.8 1.5E-21 5.2E-26 176.7 -0.7 127 146-277 3-140 (147)
6 1jl1_A Ribonuclease HI; RNAse 99.8 3.3E-20 1.1E-24 169.3 7.2 126 148-277 3-146 (155)
7 2e4l_A Ribonuclease HI, RNAse 99.8 5.8E-20 2E-24 168.2 7.1 123 148-274 5-145 (158)
8 1ril_A Ribonuclease H; hydrola 99.8 6.6E-20 2.2E-24 169.3 4.6 126 148-276 7-150 (166)
9 2lsn_A Reverse transcriptase; 99.7 1.5E-18 5.1E-23 160.0 7.8 126 147-273 5-162 (165)
10 1mu2_A HIV-2 RT; HIV-2 reverse 99.7 3.9E-17 1.3E-21 177.5 10.6 118 147-272 434-555 (555)
11 2zd1_A Reverse transcriptase/r 99.7 3.5E-17 1.2E-21 177.9 9.9 117 147-271 437-557 (557)
12 3hst_B Protein RV2228C/MT2287; 99.7 2.6E-17 8.8E-22 146.5 6.9 119 149-274 3-133 (141)
13 3u3g_D Ribonuclease H, RNAse H 99.7 1.7E-17 5.9E-22 147.0 5.8 121 148-273 2-136 (140)
14 2ehg_A Ribonuclease HI; RNAse 99.6 1.2E-16 4.1E-21 144.2 7.3 120 150-274 2-134 (149)
15 1zbf_A Ribonuclease H-related 99.1 2.4E-11 8.1E-16 109.1 2.1 120 146-266 8-139 (142)
16 4htu_A Ribonuclease H, RNAse H 98.8 5.3E-09 1.8E-13 92.6 5.6 76 147-224 3-84 (134)
17 1rw3_A POL polyprotein; RNA an 74.9 0.92 3.1E-05 47.3 1.4 74 147-223 344-428 (455)
18 2zd1_B P51 RT; P51/P66, hetero 34.9 59 0.002 33.3 6.6 75 147-222 322-405 (428)
No 1
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*
Probab=99.85 E-value=1.2e-21 Score=178.49 Aligned_cols=129 Identities=17% Similarity=0.235 Sum_probs=99.0
Q ss_pred CCCceEEEecCCCCC-CC----ceeEeeeCCe---eeEeecCCCccchHHHHHHHHHHHHHHHcCCCCeEEEEcccHHHH
Q psy9180 146 YANYTICYTDGSKTM-NT----TSCAFSIDDL---ISSSQLNPVNSIFSAELIAIYLCLEAITVHPSDQFLIVSDSRSAL 217 (491)
Q Consensus 146 ~~~~i~IyTDGS~~~-~~----vG~g~v~~~~---~~~~~l~~~~sv~~AEl~AI~~AL~~~~~~~~~~i~I~tDSqsal 217 (491)
..+.+.||||||+.. ++ .|+|++..+. ..+..+...+|++.||+.|++.||+.+.+.+..++.|+|||++++
T Consensus 4 ~~~~~~iytDGs~~~n~~~~~~aG~Gvv~~~~~~~~~~~~l~~~~tn~~aEl~A~~~aL~~~~~~~~~~v~i~tDS~~vi 83 (154)
T 2qkb_A 4 MGDFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVLYTNSMFTI 83 (154)
T ss_dssp ETTEEEEEEEEEEETTTSSSCEEEEEEECSTTCTTCEEEECCSSCCHHHHHHHHHHHHHHHHHHTTCCEEEEEESCHHHH
T ss_pred CCCeEEEEEccCcCCCCCCCCcEEEEEEEECCCceeEEeecCCCCchHHHHHHHHHHHHHHHHhCCCceEEEEECcHHHH
Confidence 357789999999874 32 6888775421 234456557899999999999999999887778999999999999
Q ss_pred HHHhccc---------CCC--CCcchhHHHHH-HhhcCCCeEEEEEeeccCCCCCChHHhHHhhCCCCCC
Q psy9180 218 AALSNVS---------FTN--PLVSKVYSCWD-LLRSRNKVVHFLWCPSHCGIRGNEAVDEAARNPVNPT 275 (491)
Q Consensus 218 ~aL~~~~---------~~~--~~~~~~~~~~I-~l~~~~~~V~~~WVPgH~gi~gNE~AD~lAk~A~~~~ 275 (491)
+.|.++. ... +....++.++| .+. .+..|.|.|||||+|++|||.||+|||+|+...
T Consensus 84 ~~i~~~~~~w~~~~w~~~~~~~~~n~~l~~~i~~l~-~~~~v~~~~V~~H~g~~~N~~AD~LA~~a~~~~ 152 (154)
T 2qkb_A 84 NGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLT-QGMDIQWMHVPGHSGFIGNEEADRLAREGAKQS 152 (154)
T ss_dssp HHHHTHHHHHHTTTSBCTTSSBCTTHHHHHHHHHHH-TTCEEEEEECCTTSSCHHHHHHHHHHHHHHTCC
T ss_pred hhhhhhHHHHHhccccccCCCccccHHHHHHHHHHH-cCCceEEEEccCCCCCHhHHHHHHHHHHHHHhc
Confidence 9998742 111 11224556666 332 356799999999999999999999999998653
No 2
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Probab=99.85 E-value=2e-21 Score=176.66 Aligned_cols=125 Identities=23% Similarity=0.288 Sum_probs=93.6
Q ss_pred cCCCceEEEecCCCCC--CCceeEeeeCC-eeeEeecCCCccchHHHHHHHHHHHHHHHcCCCCeEEEEcccHHHHHHHh
Q psy9180 145 KYANYTICYTDGSKTM--NTTSCAFSIDD-LISSSQLNPVNSIFSAELIAIYLCLEAITVHPSDQFLIVSDSRSALAALS 221 (491)
Q Consensus 145 ~~~~~i~IyTDGS~~~--~~vG~g~v~~~-~~~~~~l~~~~sv~~AEl~AI~~AL~~~~~~~~~~i~I~tDSqsal~aL~ 221 (491)
..++.+.||||||+.. +..|+|++... ......+ ..+|++.||+.|+..||+.+ ..++.|+|||++++++|.
T Consensus 8 P~~~~~~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~-~~~Tnn~aEl~A~i~AL~~~----~~~v~i~tDS~~v~~~i~ 82 (150)
T 3qio_A 8 PIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVTL-TDTTNQKTELQAIYLALQDS----GLEVNIVTDSQYALGIIT 82 (150)
T ss_dssp CCTTCEEEEEEEEECTTTCCEEEEEEETTSCEEEEEE-SSCCHHHHHHHHHHHHHHHS----CSEEEEEESCHHHHHHHH
T ss_pred CCCCCEEEEEccCCCCCCCCeEEEEEEEcCCEEEEeC-CCCCHHHHHHHHHHHHHHhC----CCcEEEEeCcHHHHHHHH
Confidence 4567899999999873 33677766432 2222333 57899999999999999985 479999999999999998
Q ss_pred cccC-----------CCCCcchhHHHHH-HhhcCCCeEEEEEeeccCCCCCChHHhHHhhCCCCC
Q psy9180 222 NVSF-----------TNPLVSKVYSCWD-LLRSRNKVVHFLWCPSHCGIRGNEAVDEAARNPVNP 274 (491)
Q Consensus 222 ~~~~-----------~~~~~~~~~~~~I-~l~~~~~~V~~~WVPgH~gi~gNE~AD~lAk~A~~~ 274 (491)
++.. ..|...+++.+++ .+..+...|.|.|||||+|++|||.||+|||+|+..
T Consensus 83 ~w~~~W~~~gw~~~~g~~v~n~~l~~~l~~~l~~~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~ 147 (150)
T 3qio_A 83 QWIHNWKKRGWKTADKKPVKNVDLVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRK 147 (150)
T ss_dssp HHHHHHCC------------CHHHHHHHHHHHTTCSEEEEEECCTTSCCHHHHHHHHHHHTTTSC
T ss_pred HHHHHHhhcCcCcCcCcccccHHHHHHHHHHHhhcCceEEEEccCcCCChhHHHHHHHHHHHHHH
Confidence 7521 1111224455555 333467899999999999999999999999999875
No 3
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}
Probab=99.82 E-value=2.4e-21 Score=174.70 Aligned_cols=124 Identities=21% Similarity=0.147 Sum_probs=90.4
Q ss_pred CceEEEecCCCCCC--CceeEeee--CCeeeEe-ecCCCccchHHHHHHHHHHHHHHHcCCCCeEEEEcccHHHHHHHhc
Q psy9180 148 NYTICYTDGSKTMN--TTSCAFSI--DDLISSS-QLNPVNSIFSAELIAIYLCLEAITVHPSDQFLIVSDSRSALAALSN 222 (491)
Q Consensus 148 ~~i~IyTDGS~~~~--~vG~g~v~--~~~~~~~-~l~~~~sv~~AEl~AI~~AL~~~~~~~~~~i~I~tDSqsal~aL~~ 222 (491)
..++||||||+..+ ..|+|++. ++....+ .....+|++.||+.|++.||+.+.+ ..++.|+|||+++++.|.+
T Consensus 3 ~~i~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~~~~~~~Tnn~aEl~A~~~AL~~~~~--~~~v~I~tDS~~vi~~i~~ 80 (146)
T 3h08_A 3 KTITIYTDGAASGNPGKGGWGALLMYGSSRKEISGYDPATTNNRMELMAAIKGLEALKE--PARVQLYSDSAYLVNAMNE 80 (146)
T ss_dssp CEEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEEEEECHHHHHHHHHHHHHHTCSS--CCEEEEEESCHHHHHHHHS
T ss_pred ceEEEEEecCCCCCCCceEEEEEEEECCeeEEeecCCCCCcHHHHHHHHHHHHHHhcCc--cCcEEEEeChHHHHHHHHH
Confidence 46899999998753 36777663 3322111 1124688999999999999999876 5899999999999999987
Q ss_pred -cc-----------CCCCCcchhHHHHH-HhhcCCCeEEEEEeeccCCCCCChHHhHHhhCCCCC
Q psy9180 223 -VS-----------FTNPLVSKVYSCWD-LLRSRNKVVHFLWCPSHCGIRGNEAVDEAARNPVNP 274 (491)
Q Consensus 223 -~~-----------~~~~~~~~~~~~~I-~l~~~~~~V~~~WVPgH~gi~gNE~AD~lAk~A~~~ 274 (491)
+. ...+...+++.+++ .+.. ...|.|.|||||+|++|||.||+|||+|+..
T Consensus 81 ~w~~~W~~~~w~~~~~~~v~n~~l~~~~~~~~~-~~~v~~~~V~gH~g~~~N~~AD~LA~~a~~~ 144 (146)
T 3h08_A 81 GWLKRWVKNGWKTAAKKPVENIDLWQEILKLTT-LHRVTFHKVKGHSDNPYNSRADELARLAIKE 144 (146)
T ss_dssp SHHHHHHHTTCC----CCCTTHHHHHHHHHHHH-HSEEEEEECCC-CCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCccCCCCCcCCHHHHHHHHHHHh-hCceEEEEcCCcCCcHhHHHHHHHHHHHHHh
Confidence 21 01122224566666 2222 3579999999999999999999999998754
No 4
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A
Probab=99.81 E-value=2.3e-20 Score=172.17 Aligned_cols=126 Identities=25% Similarity=0.211 Sum_probs=93.9
Q ss_pred CceEEEecCCCC--CCCceeEee--eCCe-eeEeecCCCccchHHHHHHHHHHHHHHHcCCCCeEEEEcccHHHHHHHhc
Q psy9180 148 NYTICYTDGSKT--MNTTSCAFS--IDDL-ISSSQLNPVNSIFSAELIAIYLCLEAITVHPSDQFLIVSDSRSALAALSN 222 (491)
Q Consensus 148 ~~i~IyTDGS~~--~~~vG~g~v--~~~~-~~~~~l~~~~sv~~AEl~AI~~AL~~~~~~~~~~i~I~tDSqsal~aL~~ 222 (491)
..+.||||||+. +|..|+|++ ..+. .....+...+|++.||+.|+..||+.+ ...++.|+|||+++++++-.
T Consensus 22 ~~i~iytDGs~~~npG~~g~G~vi~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~---~~~~v~I~tDS~~vi~~iw~ 98 (165)
T 3p1g_A 22 ADYTWYTDGSSFLQEGQRRAGAAVTTETEVIWARALPAGTSAQRAELIALTQALKMA---EGKKLNVYTDSRYAFATAHV 98 (165)
T ss_dssp CSEEEEEEEEEEEETTEEEEEEEEECSSCEEEEEEECTTCCHHHHHHHHHHHHHHHT---BTSEEEEEECCHHHHHHHHS
T ss_pred CCEEEEEEcccCCCCCceEEEEEEEECCEEEEEecCCCCCcHHHHHHHHHHHHHHHc---cCceEEEEEchHHHHhhhhc
Confidence 358999999997 344677754 2222 222245678899999999999999998 26899999999999999932
Q ss_pred ccCCCCCcchhHHHHH-HhhcCCCeEEEEEeeccCC-----CCCChHHhHHhhCCCCCCC
Q psy9180 223 VSFTNPLVSKVYSCWD-LLRSRNKVVHFLWCPSHCG-----IRGNEAVDEAARNPVNPTQ 276 (491)
Q Consensus 223 ~~~~~~~~~~~~~~~I-~l~~~~~~V~~~WVPgH~g-----i~gNE~AD~lAk~A~~~~~ 276 (491)
.....+....+..+++ .....+..|.|.|||||+| ++|||.||+|||+|+....
T Consensus 99 ~~~g~~v~n~dl~~~l~~~l~~~~~v~~~wVkgH~g~~~~~~~gNe~AD~LA~~aa~~~~ 158 (165)
T 3p1g_A 99 HSEGREIKNKNEILALLKALFLPKRLSIIHCPGHQKGNSAEARGNRMADQAAREAAMKAV 158 (165)
T ss_dssp CCCSCCCSSHHHHHHHHHHTTSBSEEEEEECCSSCCSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCcccCHHHHHHHHHHHhcCCceEEEEecCCCCCCcCcchHHHHHHHHHHHHHhcCC
Confidence 2222232234555665 3233678999999999999 9999999999999987654
No 5
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A
Probab=99.81 E-value=1.5e-21 Score=176.74 Aligned_cols=127 Identities=16% Similarity=0.105 Sum_probs=92.2
Q ss_pred CCCceEEEecCCCCCCCceeEeee--CCee--eEe-ec--CC--CccchHHHHHHHHHHHHHHHcCCCCeEEEEcccHHH
Q psy9180 146 YANYTICYTDGSKTMNTTSCAFSI--DDLI--SSS-QL--NP--VNSIFSAELIAIYLCLEAITVHPSDQFLIVSDSRSA 216 (491)
Q Consensus 146 ~~~~i~IyTDGS~~~~~vG~g~v~--~~~~--~~~-~l--~~--~~sv~~AEl~AI~~AL~~~~~~~~~~i~I~tDSqsa 216 (491)
.++.+.||||||+.++..|+|++. .+.. .+. .. +. .+|++.||+.|+..||+.+.+.+. ++.|+|||+.+
T Consensus 3 ~~~~i~iytDGs~~~g~~G~G~vi~~~g~~~~~~~~~~~~~~~~~~tNn~aEl~A~~~AL~~a~~~~~-~v~I~tDS~~i 81 (147)
T 2kq2_A 3 DRTEYDVYTDGSYVNGQYAWAYAFVKDGKVHYEDADVGKNPAAATMRNVAGEIAAALYAVKKASQLGV-KIRILHDYAGI 81 (147)
T ss_dssp TTSCCEEECCCCCBTTBCEEEEEEEETTEEEEEEEEECCCGGGGGTCTTHHHHHHHHHHHHHHHHHTC-CCCBSSCCSTH
T ss_pred CCCeEEEEECCCCCCCCcEEEEEEEECCEEEEEEeccccccccccccHHHHHHHHHHHHHHHHHHCCC-eEEEEECcHHH
Confidence 457799999999999778999764 2222 222 22 22 368999999999999998876555 99999999988
Q ss_pred HHHHhcccCCCCCcchhHHHHH--HhhcCCCeEEEEEeeccCCCCCChHHhHHhhCCCCCCCC
Q psy9180 217 LAALSNVSFTNPLVSKVYSCWD--LLRSRNKVVHFLWCPSHCGIRGNEAVDEAARNPVNPTQL 277 (491)
Q Consensus 217 l~aL~~~~~~~~~~~~~~~~~I--~l~~~~~~V~~~WVPgH~gi~gNE~AD~lAk~A~~~~~~ 277 (491)
...+.+.+. .. ....... +++.....|.|.|||||+|++|||.||+|||+|+....+
T Consensus 82 ~~w~~~~w~---~~-~~~~~~~~~l~~~l~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~~~~ 140 (147)
T 2kq2_A 82 AFWATGEWK---AK-NEFTQAYAKLMNQYRGIYSFEKVKAHSGNEFNDYVDMKAKSALGIRDL 140 (147)
T ss_dssp HHHTTSSSS---CC-HHHHHHHHCGGGGGSTTCCBCCCCCCCCCHHHHHHHHHHHHHHTCCCT
T ss_pred HHHHhCCCc---cC-CcchHHHHHHHHHhcCCeeEEEecCcCCCcchHHHHHHHHHHHhcccc
Confidence 877765432 11 1111222 122111289999999999999999999999999987654
No 6
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...
Probab=99.80 E-value=3.3e-20 Score=169.29 Aligned_cols=126 Identities=18% Similarity=0.183 Sum_probs=94.0
Q ss_pred CceEEEecCCCCC--CCceeEeee--CCeee--EeecCCCccchHHHHHHHHHHHHHHHcCCCCeEEEEcccHHHHHHHh
Q psy9180 148 NYTICYTDGSKTM--NTTSCAFSI--DDLIS--SSQLNPVNSIFSAELIAIYLCLEAITVHPSDQFLIVSDSRSALAALS 221 (491)
Q Consensus 148 ~~i~IyTDGS~~~--~~vG~g~v~--~~~~~--~~~l~~~~sv~~AEl~AI~~AL~~~~~~~~~~i~I~tDSqsal~aL~ 221 (491)
..+.||||||+.. +..|+|++. .+... +..+ ..+|++.||+.|+..||+.+.+ ..++.|+|||+++++.|.
T Consensus 3 ~~~~iytDGs~~~n~~~~G~G~v~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~aL~~~~~--~~~v~I~tDS~~vi~~i~ 79 (155)
T 1jl1_A 3 KQVEIFTAGSALGNPGPGGYGAILRYRGREKTFSAGY-TRTTNNRMELMAAIVALEALKE--HAEVILSTDSQYVRQGIT 79 (155)
T ss_dssp CCEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCCS--CCEEEEEECCHHHHHHHH
T ss_pred ceEEEEEccccCCCCCceEEEEEEEECCeEEEEecCC-CCCcHHHHHHHHHHHHHHHhCc--CCcEEEEeCHHHHHHHHH
Confidence 3588999999984 336788764 23221 2222 4678999999999999999876 379999999999999999
Q ss_pred ccc---------CC--CCCcchhHHHHH-HhhcCCCeEEEEEeeccCCCCCChHHhHHhhCCCCCCCC
Q psy9180 222 NVS---------FT--NPLVSKVYSCWD-LLRSRNKVVHFLWCPSHCGIRGNEAVDEAARNPVNPTQL 277 (491)
Q Consensus 222 ~~~---------~~--~~~~~~~~~~~I-~l~~~~~~V~~~WVPgH~gi~gNE~AD~lAk~A~~~~~~ 277 (491)
++. .. .|....++.+.| .+. ....|.|.|||||+|++|||.||+|||+|+..+.+
T Consensus 80 ~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~-~~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~~~~ 146 (155)
T 1jl1_A 80 QWIHNWKKRGWKTADKKPVKNVDLWQRLDAAL-GQHQIKWEWVKGHAGHPENERADELARAAAMNPTL 146 (155)
T ss_dssp TTHHHHHHTTTBCTTSCBCTTHHHHHHHHHHT-TTCEEEEEECCSSTTCHHHHHHHHHHHHHHHSCCB
T ss_pred HHHHHHhhcccccccCCccCCHHHHHHHHHHH-ccCceEEEEcCCCCCCHHHHHHHHHHHHHHhccch
Confidence 721 11 121224556666 332 34689999999999999999999999999987654
No 7
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A
Probab=99.79 E-value=5.8e-20 Score=168.21 Aligned_cols=123 Identities=20% Similarity=0.219 Sum_probs=91.7
Q ss_pred CceEEEecCCCCC--CCceeEeee--CCeee--EeecCCCccchHHHHHHHHHHHHHHHcCCCCeEEEEcccHHHHHHHh
Q psy9180 148 NYTICYTDGSKTM--NTTSCAFSI--DDLIS--SSQLNPVNSIFSAELIAIYLCLEAITVHPSDQFLIVSDSRSALAALS 221 (491)
Q Consensus 148 ~~i~IyTDGS~~~--~~vG~g~v~--~~~~~--~~~l~~~~sv~~AEl~AI~~AL~~~~~~~~~~i~I~tDSqsal~aL~ 221 (491)
..+.||||||+.. +..|+|++. .+... +..+ ..+|++.||+.|+..||+.+.+ ..++.|+|||+++++.|.
T Consensus 5 ~~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~AL~~~~~--~~~v~I~tDS~~vi~~i~ 81 (158)
T 2e4l_A 5 KLIHIFTDGSCLGNPGPGGYGIVMNYKGHTKEMSDGF-SLTTNNRMELLAPIVALEALKE--PCKIILTSDSQYMRQGIM 81 (158)
T ss_dssp CEEEEEEEEEESSSSEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCSS--CCEEEEEECCHHHHHHHH
T ss_pred CeEEEEEcccccCCCCcEEEEEEEEECCEEEEEecCc-CCCccHHHHHHHHHHHHHHhcc--CCeEEEEeCHHHHHHHHH
Confidence 4689999999984 346788764 33221 1222 3578999999999999999865 389999999999999998
Q ss_pred cc--------c-CCC--CCcchhHHHHH-HhhcCCCeEEEEEeeccCCCCCChHHhHHhhCCCCC
Q psy9180 222 NV--------S-FTN--PLVSKVYSCWD-LLRSRNKVVHFLWCPSHCGIRGNEAVDEAARNPVNP 274 (491)
Q Consensus 222 ~~--------~-~~~--~~~~~~~~~~I-~l~~~~~~V~~~WVPgH~gi~gNE~AD~lAk~A~~~ 274 (491)
++ + ... +....++.+.| .+. ....|.|.|||||+|++|||.||+|||+|+..
T Consensus 82 ~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~-~~~~v~~~wV~gH~g~~~Ne~AD~LAk~a~~~ 145 (158)
T 2e4l_A 82 TWIHGWKKKGWMTSNRTPVKNVDLWKRLDKAA-QLHQIDWRWVKGHAGHAENERCDQLARAAAEA 145 (158)
T ss_dssp THHHHHHHTTTBCTTSSBCTTHHHHHHHHHHH-TTSEEEEEECCTTCCCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHccccccCCCcccCHHHHHHHHHHH-ccCcEEEEEccCCCCchhHHHHHHHHHHHHHh
Confidence 82 1 111 11223455666 332 34689999999999999999999999999976
No 8
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Probab=99.78 E-value=6.6e-20 Score=169.30 Aligned_cols=126 Identities=19% Similarity=0.114 Sum_probs=93.1
Q ss_pred CceEEEecCCCCC--CCceeEeeeC--CeeeEee-cCCCccchHHHHHHHHHHHHHHHcCCCCeEEEEcccHHHHHHHhc
Q psy9180 148 NYTICYTDGSKTM--NTTSCAFSID--DLISSSQ-LNPVNSIFSAELIAIYLCLEAITVHPSDQFLIVSDSRSALAALSN 222 (491)
Q Consensus 148 ~~i~IyTDGS~~~--~~vG~g~v~~--~~~~~~~-l~~~~sv~~AEl~AI~~AL~~~~~~~~~~i~I~tDSqsal~aL~~ 222 (491)
..+.||||||+.. +..|+|++.. +....+. ....+|++.||+.|++.||+.+.+. .++.|+|||+++++.|.+
T Consensus 7 ~~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~~~~--~~v~I~tDS~~vi~~i~~ 84 (166)
T 1ril_A 7 KRVALFTDGACLGNPGPGGWAALLRFHAHEKLLSGGEACTTNNRMELKAAIEGLKALKEP--CEVDLYTDSHYLKKAFTE 84 (166)
T ss_dssp CCCCEEEEEEESSTTEEEEEEEEECBTTBCCEECCEEEEECHHHHHHHHHHHHHHSCCSC--CEEEEECCCHHHHHHHHS
T ss_pred ccEEEEECccccCCCCCEEEEEEEEECCEEEEEecCCCCCcHHHHHHHHHHHHHHHhccC--CeEEEEeChHHHHHHHhh
Confidence 5689999999984 3467887643 2211111 1246789999999999999988653 599999999999999998
Q ss_pred ----------ccCCC--CCcchhHHHHH-HhhcCCCeEEEEEeeccCCCCCChHHhHHhhCCCCCCC
Q psy9180 223 ----------VSFTN--PLVSKVYSCWD-LLRSRNKVVHFLWCPSHCGIRGNEAVDEAARNPVNPTQ 276 (491)
Q Consensus 223 ----------~~~~~--~~~~~~~~~~I-~l~~~~~~V~~~WVPgH~gi~gNE~AD~lAk~A~~~~~ 276 (491)
+.... +...+++.++| .+.. ...|.|.|||||+|++|||.||+|||+|+....
T Consensus 85 ~w~~~W~~~~w~~~~g~~v~n~~l~~~i~~l~~-~~~v~~~wV~gH~g~~~Ne~AD~LAk~a~~~~~ 150 (166)
T 1ril_A 85 GWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMA-PHRVRFHFVKGHTGHPENERVDREARRQAQSQA 150 (166)
T ss_dssp SHHHHHHHTTSBCTTSSBCTTHHHHHHHHHHHT-TSEEECCCCCGGGSCTHHHHHHHHHHHHHTSSC
T ss_pred hHHHHHHhcccccccCCccCcHHHHHHHHHHHh-cCeEEEEEeeCCCCchhHHHHHHHHHHHHHHhh
Confidence 22111 11224566666 3332 469999999999999999999999999987754
No 9
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=99.74 E-value=1.5e-18 Score=160.02 Aligned_cols=126 Identities=15% Similarity=0.069 Sum_probs=89.7
Q ss_pred CCceEEEecCCCCC--CC-----ceeEeeeC--C----eeeEeec-CCCccchHHHHHHHHHHHHHHHcCCCCeEEEEcc
Q psy9180 147 ANYTICYTDGSKTM--NT-----TSCAFSID--D----LISSSQL-NPVNSIFSAELIAIYLCLEAITVHPSDQFLIVSD 212 (491)
Q Consensus 147 ~~~i~IyTDGS~~~--~~-----vG~g~v~~--~----~~~~~~l-~~~~sv~~AEl~AI~~AL~~~~~~~~~~i~I~tD 212 (491)
...++||||||+.. |+ .|+|++.. + ....+.. ....+.+.||+.|+..||+.+... ..+|.|+||
T Consensus 5 ~~evviYTDGsc~gNpgp~~~~~aG~Gv~~~~~~~~~~~~~~~~~~tnn~te~~Aei~Al~~al~~al~~-~~~v~I~TD 83 (165)
T 2lsn_A 5 QYEGVFYTDGSAIKSPDPTKSNNAGMGIVHATYKPEYQVLNQWSIPLGNHTAQMAEIAAVEFACKKALKI-PGPVLVITD 83 (165)
T ss_dssp CCSEEEEEEEEEEECSSCTTCEEEEEEEEEECCSSSCCEEEEEEEEESSCCHHHHHHHHHHHHHHHHHHS-SSCEEEEES
T ss_pred CceEEEEEcCCCCCCCCCCCCCcEEEEEEEEECCCccEEeccccCCchHHHHHHHHHHHHHHHHHHHhcC-CCeEEEEeC
Confidence 45678999999883 22 68887632 1 1223333 356788889999999999887663 357999999
Q ss_pred cHHHHHHHhcccC-----------CCCCcchhHHHHH-HhhcCCCeEEEEEeeccCCC------CCChHHhHHhhCCCC
Q psy9180 213 SRSALAALSNVSF-----------TNPLVSKVYSCWD-LLRSRNKVVHFLWCPSHCGI------RGNEAVDEAARNPVN 273 (491)
Q Consensus 213 Sqsal~aL~~~~~-----------~~~~~~~~~~~~I-~l~~~~~~V~~~WVPgH~gi------~gNE~AD~lAk~A~~ 273 (491)
|+++++++..+.. +.|....++.+++ .+......|.|.|||||+|+ +|||.||+||++|+.
T Consensus 84 S~Yvi~~it~w~~~Wk~ngw~~~~~~pVkN~dL~~~l~~~~~~~~~v~~~~VkgH~g~~~~~~~~gNe~AD~LA~~gA~ 162 (165)
T 2lsn_A 84 SFYVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIAECLSMKPDITIQHEKGHQPTNTSIHTEGNALADKLATQGSY 162 (165)
T ss_dssp CHHHHHHHHTHHHHHHHTTSCSCSSSCCSSHHHHHHHHHHHHHCTTCEEEECCSSSCSSSCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhhhhhhhheeccccccCCCcccCHHHHHHHHHHHhCCCCEEEEEEeCCCCccCCCCChHHHHHHHHHHHhhh
Confidence 9999999975321 1122234566666 33344568999999999995 579999999999864
No 10
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=99.69 E-value=3.9e-17 Score=177.47 Aligned_cols=118 Identities=20% Similarity=0.254 Sum_probs=90.0
Q ss_pred CCceEEEecCCCCC-CC-ceeEeeeCC-eeeEeecCCCccchHHHHHHHHHHHHHHHcCCCCeEEEEcccHHHHHHHhcc
Q psy9180 147 ANYTICYTDGSKTM-NT-TSCAFSIDD-LISSSQLNPVNSIFSAELIAIYLCLEAITVHPSDQFLIVSDSRSALAALSNV 223 (491)
Q Consensus 147 ~~~i~IyTDGS~~~-~~-vG~g~v~~~-~~~~~~l~~~~sv~~AEl~AI~~AL~~~~~~~~~~i~I~tDSqsal~aL~~~ 223 (491)
++.+.||||||+.. ++ .|+|++... ......+ ..+|++.||+.|+..||+. ...++.|+|||++|++++.++
T Consensus 434 ~~~~~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~-~~~TNn~aEl~A~i~aL~~----~~~~v~I~tDS~~v~~~i~~~ 508 (555)
T 1mu2_A 434 PGAETFYTDGSCNRQSKEGKAGYVTDRGKDKVKKL-EQTTNQQAELEAFAMALTD----SGPKVNIIVDSQYVMGIVASQ 508 (555)
T ss_dssp TTCEEEEEEEEECTTTCCEEEEEEETTSCEEEEEE-SSCCHHHHHHHHHHHHHHT----SCSEEEEEESCHHHHHHHHTC
T ss_pred CCceEEEEcccccCCCCCceEEEEEEeCCEeeccC-CCCCHHHHHHHHHHHHHHc----CCCeEEEEEehHHHHHHHhcc
Confidence 56799999999874 33 567766432 2222222 4678999999999999998 467999999999999999985
Q ss_pred cCCCCCcchhHHHHH-HhhcCCCeEEEEEeeccCCCCCChHHhHHhhCCC
Q psy9180 224 SFTNPLVSKVYSCWD-LLRSRNKVVHFLWCPSHCGIRGNEAVDEAARNPV 272 (491)
Q Consensus 224 ~~~~~~~~~~~~~~I-~l~~~~~~V~~~WVPgH~gi~gNE~AD~lAk~A~ 272 (491)
... ..+.+.+++ .+...+..|.|.|||||+|++|||.||+|||+|+
T Consensus 509 ~~~---~~~~l~~~~~~~~~~~~~v~~~wV~~H~g~~~Ne~AD~LA~~a~ 555 (555)
T 1mu2_A 509 PTE---SESKIVNQIIEEMIKKEAIYVAWVPAHKGIGGNQEVDHLVSQGI 555 (555)
T ss_dssp CSE---ESCHHHHHHHHHHHHCSEEEEEECCSSSCCTTHHHHHHHHHTTC
T ss_pred ccc---ccHHHHHHHHHHhccCCcEEEEEEECCCCChhHHHHHHHHHhhC
Confidence 431 124455555 3333467899999999999999999999999985
No 11
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=99.69 E-value=3.5e-17 Score=177.86 Aligned_cols=117 Identities=24% Similarity=0.284 Sum_probs=86.7
Q ss_pred CCceEEEecCCCC-CCC-ceeEeeeCC-eeeEeecCCCccchHHHHHHHHHHHHHHHcCCCCeEEEEcccHHHHHHHhcc
Q psy9180 147 ANYTICYTDGSKT-MNT-TSCAFSIDD-LISSSQLNPVNSIFSAELIAIYLCLEAITVHPSDQFLIVSDSRSALAALSNV 223 (491)
Q Consensus 147 ~~~i~IyTDGS~~-~~~-vG~g~v~~~-~~~~~~l~~~~sv~~AEl~AI~~AL~~~~~~~~~~i~I~tDSqsal~aL~~~ 223 (491)
.+.+.||||||+. +++ .|+|++..+ ....... ..+|++.||+.|++.||+.+ ..++.|+|||++|++++.++
T Consensus 437 ~~~~~iytDGs~~~n~g~~g~g~v~~~~~~~~~~~-~~~TNn~aEl~Ai~~aL~~~----~~~v~I~tDS~~vi~~i~~~ 511 (557)
T 2zd1_A 437 VGAETFYVDGAANRETKLGKAGYVTNKGRQKVVPL-TNTTNQKTELQAIYLALQDS----GLEVNIVTDSQYALGIIQAQ 511 (557)
T ss_dssp TTSCEEEEEEEECTTTCCEEEEEEETTSCEEEEEE-CSCCHHHHHHHHHHHHHHHS----CSEEEEEECCHHHHHHHTTC
T ss_pred CCCEEEEEccCCCCCCCceEEEEEEECCcEEEecC-CCCCHHHHHHHHHHHHHHhC----CCcEEEEeChHHHHHHHhcC
Confidence 4669999999987 333 566766432 2222232 46899999999999999998 57999999999999999986
Q ss_pred cCCCCCcchhHHHHH-HhhcCCCeEEEEEeeccCCCCCChHHhHHhhCC
Q psy9180 224 SFTNPLVSKVYSCWD-LLRSRNKVVHFLWCPSHCGIRGNEAVDEAARNP 271 (491)
Q Consensus 224 ~~~~~~~~~~~~~~I-~l~~~~~~V~~~WVPgH~gi~gNE~AD~lAk~A 271 (491)
..++ .+++.+++ ........|.|.|||||+|++|||.||+|||+|
T Consensus 512 ~~~~---~~~l~~~~~~~l~~~~~v~~~wV~~H~g~~~Ne~AD~LA~~a 557 (557)
T 2zd1_A 512 PDKS---ESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAG 557 (557)
T ss_dssp CSEE---SSHHHHHHHHHHHHCSEEEEEECCSSSCCTTCCGGGGCC---
T ss_pred CccC---CHHHHHHHHHHHhcCCCEEEEEcCCCCCChhHHHHHHHHhcC
Confidence 5321 24455555 222234689999999999999999999999986
No 12
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=99.68 E-value=2.6e-17 Score=146.49 Aligned_cols=119 Identities=15% Similarity=0.164 Sum_probs=88.8
Q ss_pred ceEEEecCCCCC--CCceeEeee--CC---eeeEe-ecCCCccchHHHHHHHHHHHHHHHcCCCCeEEEEcccHHHHHHH
Q psy9180 149 YTICYTDGSKTM--NTTSCAFSI--DD---LISSS-QLNPVNSIFSAELIAIYLCLEAITVHPSDQFLIVSDSRSALAAL 220 (491)
Q Consensus 149 ~i~IyTDGS~~~--~~vG~g~v~--~~---~~~~~-~l~~~~sv~~AEl~AI~~AL~~~~~~~~~~i~I~tDSqsal~aL 220 (491)
.++||||||+.. +..|+|++. .+ ....+ .....+|++.||+.|++.||+.+.+.+..++.|+|||+++++.+
T Consensus 3 ~~~iy~DGs~~~~~g~~g~G~v~~~~~~~~~~~~~~~~~~~~tn~~aEl~A~~~aL~~a~~~~~~~v~i~tDS~~vv~~i 82 (141)
T 3hst_B 3 KVVIEADGGSRGNPGPAGYGAVVWTADHSTVLAESKQAIGRATNNVAEYRGLIAGLDDAVKLGATEAAVLMDSKLVVEQM 82 (141)
T ss_dssp EEEEEEEEEESSSSEEEEEEEEEEETTSCSEEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHTCSEEEEEESCHHHHHHH
T ss_pred EEEEEEecCCCCCCCCcEEEEEEEeCCCCcEEEeeeccCCCCchHHHHHHHHHHHHHHHHHCCCceEEEEeChHHHHHHH
Confidence 479999999884 357888663 22 11111 12247899999999999999999987788999999999999999
Q ss_pred hcccCCCCCcchh---HHHHH-HhhcCCCeEEEEEeeccCCCCCChHHhHHhhCCCCC
Q psy9180 221 SNVSFTNPLVSKV---YSCWD-LLRSRNKVVHFLWCPSHCGIRGNEAVDEAARNPVNP 274 (491)
Q Consensus 221 ~~~~~~~~~~~~~---~~~~I-~l~~~~~~V~~~WVPgH~gi~gNE~AD~lAk~A~~~ 274 (491)
.+.+. ..... +.+++ .+..+...|.|.|||+ ++|+.||+|||+|+..
T Consensus 83 ~~~~~---~~~~~l~~~~~~i~~l~~~~~~v~~~~V~~----~~N~~AD~LA~~a~~~ 133 (141)
T 3hst_B 83 SGRWK---VKHPDLLKLYVQAQALASQFRRINYEWVPR----ARNTYADRLANDAMDA 133 (141)
T ss_dssp TTSSC---CCSHHHHHHHHHHHHHHTTSSEEEEEECCG----GGCHHHHHHHHHHHHH
T ss_pred hCCcc---cCCHHHHHHHHHHHHHHhcCCeEEEEEcCC----cccHHHHHHHHHHHHH
Confidence 97431 11122 23344 4455568999999995 8999999999988753
No 13
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=99.68 E-value=1.7e-17 Score=146.99 Aligned_cols=121 Identities=21% Similarity=0.194 Sum_probs=87.7
Q ss_pred CceEEEecCCCCC--CCceeEeeeC--C--ee-eEeecCCCccchHHHHHHHHHHHHHHHcCCCC----eEEEEcccHHH
Q psy9180 148 NYTICYTDGSKTM--NTTSCAFSID--D--LI-SSSQLNPVNSIFSAELIAIYLCLEAITVHPSD----QFLIVSDSRSA 216 (491)
Q Consensus 148 ~~i~IyTDGS~~~--~~vG~g~v~~--~--~~-~~~~l~~~~sv~~AEl~AI~~AL~~~~~~~~~----~i~I~tDSqsa 216 (491)
..++||||||+.. +..|+|++.. + .. ........+|++.||+.|+..||+.+.+.+.+ ++.|+|||+++
T Consensus 2 ~~~~iy~DGs~~~n~g~~G~G~v~~~~~g~~~~~~~~~~~~~tn~~aEl~A~~~aL~~a~~~~~~~~~~~v~i~tDS~~v 81 (140)
T 3u3g_D 2 NKIIIYTDGGARGNPGPAGIGVVITDEKGNTLHESSAYIGETTNNVAEYEALIRALEDLQMFGDKLVDMEVEVRMDSELI 81 (140)
T ss_dssp CEEEEEEEEEESSTTEEEEEEEEEECTTSCEEEEEEEEEEEECHHHHHHHHHHHHHHHHGGGGGGGTTCEEEEEESCHHH
T ss_pred ceEEEEEecCCCCCCCCcEEEEEEEeCCCCEEEEEEeeCCCCchHHHHHHHHHHHHHHHHHcCCCCCCceEEEEeChHHH
Confidence 3589999999974 3478887642 2 11 11122235799999999999999999876666 99999999999
Q ss_pred HHHHhcccC-CCCCcchhHHHHH-Hh-hcCCCeEEEEEeeccCCCCCChHHhHHhhCCCC
Q psy9180 217 LAALSNVSF-TNPLVSKVYSCWD-LL-RSRNKVVHFLWCPSHCGIRGNEAVDEAARNPVN 273 (491)
Q Consensus 217 l~aL~~~~~-~~~~~~~~~~~~I-~l-~~~~~~V~~~WVPgH~gi~gNE~AD~lAk~A~~ 273 (491)
++.+.+.+. +++ .-..+.+++ .+ ..+...|.|.|||+ ++||.||+|||+|+.
T Consensus 82 i~~i~~~~~~~~~-~l~~~~~~i~~l~~~~~~~v~~~~V~~----~~N~~AD~LA~~a~~ 136 (140)
T 3u3g_D 82 VRQMQGVYKVKEP-TLKEKFAKIAHIKMERVPNLVFVHIPR----EKNARADELVNEAID 136 (140)
T ss_dssp HHHHTTSSCCCCG-GGHHHHHHHHHHHHHHCTTCEEEECCG----GGGHHHHHHHHHHHH
T ss_pred HHHhCCCcccCCH-HHHHHHHHHHHHhhcCCCcEEEEEcCc----hhhHHHHHHHHHHHH
Confidence 999998542 111 112234445 34 44446899999994 899999999998864
No 14
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=99.65 E-value=1.2e-16 Score=144.17 Aligned_cols=120 Identities=17% Similarity=0.125 Sum_probs=87.5
Q ss_pred eEEEecCCCC--C-CCcee-EeeeC-C--eeeEee--cC---CCccchHHHHHHHHHHHHHHHcCCCCeEEEEcccHHHH
Q psy9180 150 TICYTDGSKT--M-NTTSC-AFSID-D--LISSSQ--LN---PVNSIFSAELIAIYLCLEAITVHPSDQFLIVSDSRSAL 217 (491)
Q Consensus 150 i~IyTDGS~~--~-~~vG~-g~v~~-~--~~~~~~--l~---~~~sv~~AEl~AI~~AL~~~~~~~~~~i~I~tDSqsal 217 (491)
+.||||||+. + +..|+ |++.. + ....+. +. ..+|++.||+.|+..||+.+.+.+..++.|+|||+.++
T Consensus 2 ~~iy~DGs~~~~n~g~~G~~G~vi~~~g~~~~~~~~~~~~~~~~~tnn~aEl~A~~~aL~~a~~~g~~~v~i~tDS~~vi 81 (149)
T 2ehg_A 2 IIGYFDGLCEPKNPGGIATFGFVIYLDNRKIEGYGLAEKPFSINSTNNVAEYSGLICLMETMLRLGISSPIIKGDSQLVI 81 (149)
T ss_dssp CEEEEEEEEESSSSSSEEEEEEEEECSSCEEEEEEECSCTTCTTCCHHHHHHHHHHHHHHHHHHHTCCSCEEEESCHHHH
T ss_pred EEEEEeeccCCCCCChheEEEEEEEECCEEEEEeccccCCCCCCccHHHHHHHHHHHHHHHHHHcCCCEEEEEeChHHHH
Confidence 6899999987 2 55775 76532 2 222222 22 37899999999999999999987778999999999999
Q ss_pred HHHhcccCCCCCcchhHHHHH-HhhcCCCeEEEEEeeccCCCCCChHHhHHhhCCCCC
Q psy9180 218 AALSNVSFTNPLVSKVYSCWD-LLRSRNKVVHFLWCPSHCGIRGNEAVDEAARNPVNP 274 (491)
Q Consensus 218 ~aL~~~~~~~~~~~~~~~~~I-~l~~~~~~V~~~WVPgH~gi~gNE~AD~lAk~A~~~ 274 (491)
+.+.+++..+......+.+++ .+.... .|.|.|||+ ++|+.||+|||+|+..
T Consensus 82 ~~i~~~w~~~~~~~~~l~~~i~~l~~~~-~v~~~~V~~----~~N~~AD~LA~~a~~~ 134 (149)
T 2ehg_A 82 KQMNGEYKVKAKRIIPLYEKAIELKKKL-NATLIWVPR----EENKEADRLSRVAYEL 134 (149)
T ss_dssp HHHTTSSCCCCTTHHHHHHHHHHHHHHH-TCEEEECCG----GGCHHHHHHHHHHHHH
T ss_pred HHHhCccccCCHHHHHHHHHHHHHHhcC-CEEEEEcCC----cccHHHHHHHHHHHHh
Confidence 999987432211224455555 222222 499999998 4999999999998754
No 15
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A*
Probab=99.08 E-value=2.4e-11 Score=109.06 Aligned_cols=120 Identities=11% Similarity=-0.066 Sum_probs=83.5
Q ss_pred CCCceEEEecCCCCC--CCceeEeeeCC--eeeEeec-CCCccchHHHHHHHHHHHHHHHcCCCCeEEEEcccHHHHHHH
Q psy9180 146 YANYTICYTDGSKTM--NTTSCAFSIDD--LISSSQL-NPVNSIFSAELIAIYLCLEAITVHPSDQFLIVSDSRSALAAL 220 (491)
Q Consensus 146 ~~~~i~IyTDGS~~~--~~vG~g~v~~~--~~~~~~l-~~~~sv~~AEl~AI~~AL~~~~~~~~~~i~I~tDSqsal~aL 220 (491)
.+..+.||||||+.. |..|+|++... .....+. -..+|++.||+.|++.||+.+.+... ++.|+|||+.+++.+
T Consensus 8 ~~~~~~iy~DGa~~gNpG~~G~G~vl~~~g~~~~~~~~~~~~TNN~aEl~A~i~aL~~~~~~~~-~v~i~tDS~~vi~w~ 86 (142)
T 1zbf_A 8 EIIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKERNS-RKPIYSNSQTAIKWV 86 (142)
T ss_dssp CCCSSSEEEEEEECSSSEEEEEEEEETTTCCEEEECCCEEEECHHHHHHHHHHHHHHHHHHTTC-CCCEEESCHHHHHHH
T ss_pred CCCeEEEEEeeccCCCCCCeEEEEEEEeCCEEEEEecccCCcCcHHHHHHHHHHHHHHHHhCCC-eEEEEEehHHHHHHH
Confidence 456789999999873 44788877532 1111111 12578999999999999999998666 899999999999999
Q ss_pred hcccCCC----CCcchhHHHHH-Hh--hcCCCeEEEEEeeccCCCCCChHHhH
Q psy9180 221 SNVSFTN----PLVSKVYSCWD-LL--RSRNKVVHFLWCPSHCGIRGNEAVDE 266 (491)
Q Consensus 221 ~~~~~~~----~~~~~~~~~~I-~l--~~~~~~V~~~WVPgH~gi~gNE~AD~ 266 (491)
++...+. +....++.+.+ .+ -.+...+....|+-|++.-||.-||.
T Consensus 87 ~~~~~k~~~~~~v~n~dLw~~l~~~~~w~~~~~~~~~~~kw~~~~~ge~pad~ 139 (142)
T 1zbf_A 87 KDKKAKSTLVRNEETALIWKLVDEAEEWLNTHTYETPILKWQTDKWGEIKADY 139 (142)
T ss_dssp HHTCCCCCCCCSTTTHHHHHHHHHHHHHHHHCCCCCCEEECCHHHHCSCTTCC
T ss_pred HcCCccCCCCCCcccHHHHHHHHHHHHHHhhCCCceeEEEeccCccCcCcccc
Confidence 9876321 11223455555 11 12334566667788988899999984
No 16
>4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A
Probab=98.77 E-value=5.3e-09 Score=92.57 Aligned_cols=76 Identities=14% Similarity=0.077 Sum_probs=56.4
Q ss_pred CCceEEEecCCCCC--CCceeEeee-CC-e-e-eEeecCCCccchHHHHHHHHHHHHHHHcCCCCeEEEEcccHHHHHHH
Q psy9180 147 ANYTICYTDGSKTM--NTTSCAFSI-DD-L-I-SSSQLNPVNSIFSAELIAIYLCLEAITVHPSDQFLIVSDSRSALAAL 220 (491)
Q Consensus 147 ~~~i~IyTDGS~~~--~~vG~g~v~-~~-~-~-~~~~l~~~~sv~~AEl~AI~~AL~~~~~~~~~~i~I~tDSqsal~aL 220 (491)
+....||||||+.. |..|+|+|. .+ . . ....+ ..+|++.||++|++.||+.+.+.+.. +.|+|||++|++.+
T Consensus 3 p~~~~iytDGac~GNPGp~G~ggV~~~~g~~~~~~g~~-~~tTNN~aEl~A~i~aL~~l~~~~~~-v~i~tDSqyVi~wi 80 (134)
T 4htu_A 3 IIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPI-PIGTNNMGEFLAIVHGLRYLKERNSR-KPIYSNSQTAIKWV 80 (134)
T ss_dssp CCSSSEEEEEEEETTTEEEEEEEEETTTCCEEEEEEEE-EEECHHHHHHHHHHHHHHHHHHTTCC-CCEEESCHHHHHHH
T ss_pred ccceEEEEeeccCCCCCCeEEEEEEEECCEEEEEecCC-CCCchHHHHHHHHHHHHHHHHhCCCC-EEEEcchHHHHHHH
Confidence 45678999999873 346775443 22 1 1 12222 36899999999999999999875444 89999999999999
Q ss_pred hccc
Q psy9180 221 SNVS 224 (491)
Q Consensus 221 ~~~~ 224 (491)
.+..
T Consensus 81 ~~~~ 84 (134)
T 4htu_A 81 KDKK 84 (134)
T ss_dssp HHTC
T ss_pred HcCC
Confidence 8754
No 17
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2
Probab=74.92 E-value=0.92 Score=47.26 Aligned_cols=74 Identities=9% Similarity=-0.045 Sum_probs=47.6
Q ss_pred CCceEEEecCCCCCCCceeEeeeCC---e----eeEeec---CCCccchHHHHHHHHHHHHHHHcC-CCCeEEEEcccHH
Q psy9180 147 ANYTICYTDGSKTMNTTSCAFSIDD---L----ISSSQL---NPVNSIFSAELIAIYLCLEAITVH-PSDQFLIVSDSRS 215 (491)
Q Consensus 147 ~~~i~IyTDGS~~~~~vG~g~v~~~---~----~~~~~l---~~~~sv~~AEl~AI~~AL~~~~~~-~~~~i~I~tDSqs 215 (491)
...+.+|||+|. +++|+...... . ..+.++ ....+++..|++||..|++..... ....+.|+||+.
T Consensus 344 ~~~~~l~~DAS~--~~~gavL~q~~~~~~~~i~y~Sk~l~~~e~~ys~~ekEllAi~~a~~~~~~yl~g~~~~v~tDh~- 420 (455)
T 1rw3_A 344 TKPFELFVDEKQ--GYAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMGQPLVIKAPHA- 420 (455)
T ss_dssp CCTTSCEEEEEE--CSSSBEECCBCTTTTCCCCCCCBCSCSSCSSSCCSSHHHHHHHHHHHHHHGGGCSSCEEEECSSC-
T ss_pred CCcEEEEEeccC--CcceeEEEEecCCcEEEEEEEcccCCccccccchHHHHHHHHHHHHHHHHHHcCCCcEEEEecCh-
Confidence 345689999985 33443222111 0 111223 245568899999999999988753 457899999997
Q ss_pred HHHHHhcc
Q psy9180 216 ALAALSNV 223 (491)
Q Consensus 216 al~aL~~~ 223 (491)
++..+.+.
T Consensus 421 ~~~~l~~~ 428 (455)
T 1rw3_A 421 VEALVKQP 428 (455)
T ss_dssp TTTTSSST
T ss_pred HHHHhCCC
Confidence 66666554
No 18
>2zd1_B P51 RT; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} SCOP: e.8.1.2 PDB: 2ykm_B* 2ykn_B* 2ze2_B* 3bgr_B* 3ig1_B* 3irx_B* 3is9_B* 3qo9_B* 3v4i_B* 3v6d_B* 3v81_B* 3klf_B* 3kk1_B* 3kjv_B* 3kk2_B* 3kk3_B* 2be2_B* 1n5y_B* 1bqm_B* 1n6q_B* ...
Probab=34.91 E-value=59 Score=33.27 Aligned_cols=75 Identities=3% Similarity=-0.101 Sum_probs=41.6
Q ss_pred CCceEEEecCCCCCCCceeEeeeCC--eeeEeec--CCCccchHHHHHH-HHHHHHHHHc----CCCCeEEEEcccHHHH
Q psy9180 147 ANYTICYTDGSKTMNTTSCAFSIDD--LISSSQL--NPVNSIFSAELIA-IYLCLEAITV----HPSDQFLIVSDSRSAL 217 (491)
Q Consensus 147 ~~~i~IyTDGS~~~~~vG~g~v~~~--~~~~~~l--~~~~sv~~AEl~A-I~~AL~~~~~----~~~~~i~I~tDSqsal 217 (491)
...+.++||+|.. |..|+-...++ ...+.++ ......+.-|++| |..||+.... .....++++||.+...
T Consensus 322 ~~~~~l~~das~~-g~~g~vl~q~~~~~~~s~~~~~~~~y~~~~~e~la~vv~al~~~r~yl~G~~~~~~i~~td~~~~~ 400 (428)
T 2zd1_B 322 SKDLIAEIQKQGQ-GQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWET 400 (428)
T ss_dssp TSCCEEEEEEEET-TEEEEEEESSTTCEEEEEEEECCSSCTTCHHHHHHHHHHHHHHHHHHHHSSCCEEEESSCHHHHHH
T ss_pred CCCEEEEEecCCC-CcEEEEEecCCCceeeecccchhhhcccchHHHHHHHHHHhhccceEEECCCCcEECCccHHHHHH
Confidence 4557999999952 11122122222 1222222 2333445566666 9999987643 2346778899998755
Q ss_pred HHHhc
Q psy9180 218 AALSN 222 (491)
Q Consensus 218 ~aL~~ 222 (491)
.....
T Consensus 401 ~~~~~ 405 (428)
T 2zd1_B 401 WWTEY 405 (428)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 44443
Done!