RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9180
(491 letters)
>gnl|CDD|187700 cd09276, Rnase_HI_RT_non_LTR, non-LTR RNase HI domain of reverse
transcriptases. Ribonuclease H (RNase H) is classified
into two families, type 1 (prokaryotic RNase HI,
eukaryotic RNase H1 and viral RNase H) and type 2
(prokaryotic RNase HII and HIII, and eukaryotic RNase
H2). Ribonuclease HI (RNase HI) is an endonuclease that
cleaves the RNA strand of an RNA/DNA hybrid in a
sequence non-specific manner. RNase H is widely present
in various organisms, including bacteria, archaea and
eukaryotes. RNase HI has also been observed as an
adjunct domain to the reverse transcriptase gene in
retroviruses, long-term repeat (LTR)-bearing
retrotransposons and non-LTR retrotransposons. RNase HI
in LTR retrotransposons perform degradation of the
original RNA template, generation of a polypurine tract
(the primer for plus-strand DNA synthesis), and final
removal of RNA primers from newly synthesized minus and
plus strands. The catalytic residues for RNase H
enzymatic activity, three aspartatic acids and one
glutamatic acid residue (DEDD), are unvaried across all
RNase H domains. The position of the RNase domain of
non-LTR and LTR transposons is at the carboxyl terminal
of the reverse transcriptase (RT) domain and their RNase
domains group together, indicating a common evolutionary
origin. Many non-LTR transposons have lost the RNase
domain because their activity is at the nucleus and
cellular RNase may suffice; however LTR retotransposons
always encode their own RNase domain because it requires
RNase activity in RNA-protein particles in the
cytoplasm. RNase H inhibitors have been explored as an
anti-HIV drug target because RNase H inactivation
inhibits reverse transcription.
Length = 128
Score = 116 bits (294), Expect = 2e-31
Identities = 45/124 (36%), Positives = 62/124 (50%), Gaps = 5/124 (4%)
Query: 151 ICYTDGSKTMNTTSCAFSI--DDLIS-SSQLNPVNSIFSAELIAIYLCLEAITV--HPSD 205
+ YTDGSK T F+I IS S +L P S+F AEL+AI L+ +
Sbjct: 1 VIYTDGSKLEGRTGAGFAIVRKGTISRSYKLGPYCSVFDAELLAILEALQLALREGRRAR 60
Query: 206 QFLIVSDSRSALAALSNVSFTNPLVSKVYSCWDLLRSRNKVVHFLWCPSHCGIRGNEAVD 265
+ I SDS++AL AL + ++PLV ++ L + V W P H GI GNE D
Sbjct: 61 KITIFSDSQAALKALRSPRSSSPLVLRIRKAIRELANHGVKVRLHWVPGHSGIEGNERAD 120
Query: 266 EAAR 269
A+
Sbjct: 121 RLAK 124
>gnl|CDD|215695 pfam00075, RNase_H, RNase H. RNase H digests the RNA strand of an
RNA/DNA hybrid. Important enzyme in retroviral
replication cycle, and often found as a domain
associated with reverse transcriptases. Structure is a
mixed alpha+beta fold with three a/b/a layers.
Length = 126
Score = 73.1 bits (180), Expect = 1e-15
Identities = 35/128 (27%), Positives = 55/128 (42%), Gaps = 13/128 (10%)
Query: 148 NYTICYTDGS--KTMNTTSCAFSIDDLISSSQLNPVNSIFSAELIAIYLCLEAITVHPSD 205
YTDGS + D S+ P + AEL+A+ LEA+
Sbjct: 2 EAVTVYTDGSCNGNPGPGGAGYVTDGGKQRSKPLPGTTNQRAELLALIEALEAL---SGQ 58
Query: 206 QFLIVSDSR----SALAALSNVSFTNPLVSKVYSCWDLLRSRNKVVHFLWCPSHCGIRGN 261
+ I +DS+ S + P+ ++ W+LL+ ++KV + W P H GI GN
Sbjct: 59 KVNIYTDSQYVIGGITNGWPTKSESKPIKNE---IWELLQKKHKV-YIQWVPGHSGIPGN 114
Query: 262 EAVDEAAR 269
E D+ A+
Sbjct: 115 ELADKLAK 122
>gnl|CDD|187690 cd06222, RNase_H, RNase H is an endonuclease that cleaves the RNA
strand of an RNA/DNA hybrid in a sequence non-specific
manner. Ribonuclease H (RNase H) enzymes are divided
into two major families, Type 1 and Type 2, based on
amino acid sequence similarities and biochemical
properties. RNase H is an endonuclease that cleaves the
RNA strand of an RNA/DNA hybrid in a sequence
non-specific manner in the presence of divalent cations.
RNase H is widely present in various organisms,
including bacteria, archaea and eukaryotes. Most
prokaryotic and eukaryotic genomes contain multiple
RNase H genes. Despite the lack of amino acid sequence
homology, Type 1 and type 2 RNase H share a main-chain
fold and steric configurations of the four acidic
active-site residues and have the same catalytic
mechanism and functions in cells. RNase H is involved in
DNA replication, repair and transcription. One of the
important functions of RNase H is to remove Okazaki
fragments during DNA replication. RNase H inhibitors
have been explored as an anti-HIV drug target because
RNase H inactivation inhibits reverse transcription.
Length = 123
Score = 57.4 bits (139), Expect = 4e-10
Identities = 28/126 (22%), Positives = 45/126 (35%), Gaps = 11/126 (8%)
Query: 153 YTDGSKTMNTTSCAF-------SIDDLISSSQLNPVNSIFSAELIAIYLCLEAITVHPSD 205
TDGS N L + S P + AEL+A+ LE
Sbjct: 1 NTDGSCKGNPGPAGAGGVLRDHEGAWLFAGSLSIPAATNNEAELLALLEALELALDLGLK 60
Query: 206 QFLIVSDSRSALAALSNVSFTNPLVSKVYSCWDLLRSRNKVVHFLWCPSHCGIRGNEAVD 265
+ +I +DS+ + +++ S + + LL S+ + F P GNE D
Sbjct: 61 KLIIETDSKYVVDLINSWSKGWKKNNLLLWDILLLLSKFIDIRFEHVPRE----GNEVAD 116
Query: 266 EAARNP 271
A+
Sbjct: 117 RLAKEA 122
>gnl|CDD|187697 cd09273, RNase_HI_RT_Bel, Bel/Pao family of RNase HI in long-term
repeat retroelements. Ribonuclease H (RNase H) enzymes
are divided into two major families, Type 1 and Type 2,
based on amino acid sequence similarities and
biochemical properties. RNase H is an endonuclease that
cleaves the RNA strand of an RNA/DNA hybrid in a
sequence non-specific manner in the presence of divalent
cations. RNase H is widely present in various organisms,
including bacteria, archaea and eukaryote. RNase HI has
also been observed as adjunct domains to the reverse
transcriptase gene in retroviruses, in long-term repeat
(LTR)-bearing retrotransposons and non-LTR
retrotransposons. RNase HI in LTR retrotransposons
perform degradation of the original RNA template,
generation of a polypurine tract (the primer for
plus-strand DNA synthesis), and final removal of RNA
primers from newly synthesized minus and plus strands.
The catalytic residues for RNase H enzymatic activity,
three aspartatic acids and one glutamatic acid residue
(DEDD), are unvaried across all RNase H domains.
Phylogenetic patterns of RNase HI of LTR retroelements
is classified into five major families, Ty3/Gypsy,
Ty1/Copia, Bel/Pao, DIRS1 and the vertebrate
retroviruses. Bel/Pao family has been described only in
metazoan genomes. RNase H inhibitors have been explored
as an anti-HIV drug target because RNase H inactivation
inhibits reverse transcription.
Length = 135
Score = 52.3 bits (126), Expect = 2e-08
Identities = 33/134 (24%), Positives = 49/134 (36%), Gaps = 19/134 (14%)
Query: 152 CYTDGSKTMNTTSCA-FSIDDLISSSQLNPVNSIFSAELIAIYLCLEAITVHPSDQFLIV 210
+TDGS + A + D++ + L S AELIA+ + A+ + I
Sbjct: 2 VFTDGSSFVRKAGYAVVTGPDVLEIATLPYGTSAQRAELIAL---IRALELAKGKPVNIY 58
Query: 211 SDSRSALAALS-------NVSFTNPLVSKVYSCWDLLR---SRNKVVHFLWCPSHCG--- 257
+DS A L F + S L+ R K V + +H G
Sbjct: 59 TDSAYAFGILHALETIWKERGFLTGKPIALASLILQLQKAIQRPKPVAVIHIRAHSGLPG 118
Query: 258 --IRGNEAVDEAAR 269
GN D+AAR
Sbjct: 119 PLALGNARADQAAR 132
>gnl|CDD|223405 COG0328, RnhA, Ribonuclease HI [DNA replication, recombination, and
repair].
Length = 154
Score = 40.4 bits (95), Expect = 4e-04
Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 12/95 (12%)
Query: 187 AELIAIYLCLEAITVHPSDQFLIVSDSRSALAALSNVSFTNPLVS---------KVYSCW 237
AEL A+ LEA+ + + + +DS+ + ++ K W
Sbjct: 46 AELRALIEALEALKELGACEVTLYTDSKYVVEGITRWIVKWKKNGWKTADKKPVKNKDLW 105
Query: 238 ---DLLRSRNKVVHFLWCPSHCGIRGNEAVDEAAR 269
D L R+++V + W H G NE D+ AR
Sbjct: 106 EELDELLKRHELVFWEWVKGHAGHPENERADQLAR 140
>gnl|CDD|187702 cd09278, RNase_HI_prokaryote_like, RNase HI family found mainly in
prokaryotes. Ribonuclease H (RNase H) is classified
into two evolutionarily unrelated families, type 1
(prokaryotic RNase HI, eukaryotic RNase H1 and viral
RNase H) and type 2 (prokaryotic RNase HII and HIII, and
eukaryotic RNase H2). RNase H is an endonuclease that
cleaves the RNA strand of an RNA/DNA hybrid in a
sequence non-specific manner. RNase H is involved in DNA
replication, repair and transcription. RNase H is widely
present in various organisms, including bacteria,
archaea and eukaryotes and most prokaryotic and
eukaryotic genomes contain multiple RNase H genes.
Despite the lack of amino acid sequence homology, Type 1
and type 2 RNase H share a main-chain fold and steric
configurations of the four acidic active-site (DEDD),
residues and have the same catalytic mechanism and
functions in cells. One of the important functions of
RNase H is to remove Okazaki fragments during DNA
replication. Prokaryotic RNase H varies greatly in
domain structures and substrate specificities.
Prokaryotes and some single-cell eukaryotes do not
require RNase H for viability.
Length = 139
Score = 34.8 bits (81), Expect = 0.029
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 247 VHFLWCPSHCGIRGNEAVDEAAR 269
V + W H G GNE DE A
Sbjct: 113 VTWHWVKGHAGHPGNERADELAN 135
>gnl|CDD|75628 PRK06548, PRK06548, ribonuclease H; Provisional.
Length = 161
Score = 31.7 bits (71), Expect = 0.46
Identities = 38/141 (26%), Positives = 61/141 (43%), Gaps = 18/141 (12%)
Query: 148 NYTICYTDGSKTMNT--TSCAFSIDDLISSSQLNPVNSIFSAELIAIYLCLEAITVHPSD 205
N I TDGS N + A+ +D+ S + + AEL A+ L A T H
Sbjct: 4 NEIIAATDGSSLANPGPSGWAWYVDENTWDSGGWDIATNNIAELTAVRELLIA-TRHTDR 62
Query: 206 QFLIVSDSRSALAALSNVSFT-----------NPLVSK--VYSCWDLLRSRNKVVHFLWC 252
LI+SDS+ + +L+ ++ P++++ + L+ +RN + W
Sbjct: 63 PILILSDSKYVINSLTKWVYSWKMRKWRKADGKPVLNQEIIQEIDSLMENRN--IRMSWV 120
Query: 253 PSHCGIRGNEAVDEAARNPVN 273
+H G NEA D AR N
Sbjct: 121 NAHTGHPLNEAADSLARQAAN 141
>gnl|CDD|187701 cd09277, RNase_HI_bacteria_HBD, Bacterial RNase HI containing a
hybrid binding domain (HBD) at the N-terminus.
Ribonuclease H (RNase H) enzymes are divided into two
major families, Type 1 and Type 2, based on amino acid
sequence similarities and biochemical properties. RNase
H is an endonuclease that cleaves the RNA strand of an
RNA/DNA hybrid in a sequence non-specific manner in the
presence of divalent cations. RNase H is involved in
DNA replication, repair and transcription. RNase H is
widely present in various organisms, including bacteria,
archaea and eukaryotes and most prokaryotic and
eukaryotic genomes contain multiple RNase H genes.
Despite the lack of amino acid sequence homology, Type 1
and type 2 RNase H share a main-chain fold and steric
configurations of the four acidic active-site (DEDD)
residues and have the same catalytic mechanism and
functions in cells. One of the important functions of
RNase H is to remove Okazaki fragments during DNA
replication. Prokaryotic RNase H varies greatly in
domain structures and substrate specificities.
Prokaryotes and some single-cell eukaryotes do not
require RNase H for viability. Some bacteria
distinguished from other bacterial RNase HI in the
presence of a hybrid binding domain (HBD) at the
N-terminus which is commonly present at the N-termini of
eukaryotic RNase HI. It has been reported that this
domain is required for dimerization and processivity of
RNase HI upon binding to RNA-DNA hybrids.
Length = 133
Score = 30.9 bits (71), Expect = 0.52
Identities = 8/31 (25%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 243 RNKV-VHFLWCPSHCGIRGNEAVDEAARNPV 272
+ K+ + F+ +H G + NE D+ A+ +
Sbjct: 103 KKKIKISFVKVKAHSGDKYNELADKLAKKAL 133
>gnl|CDD|187704 cd09280, RNase_HI_eukaryote_like, Eukaryotic RNase H is longer and
more complex than their prokaryotic counterparts and
unlike prokaryote, RNase H are essential in higher
eukaryote. Ribonuclease H (RNase H) is classified into
two families, type 1 (prokaryotic RNase HI, eukaryotic
RNase H1 and viral RNase H) and type 2 (prokaryotic
RNase HII and HIII, and eukaryotic RNase H2). RNase H is
an endonuclease that cleaves the RNA strand of an
RNA/DNA hybrid in a sequence non-specific manner. RNase
H is involved in DNA replication, repair and
transcription. One of the important functions of RNase H
is to remove Okazaki fragments during DNA replication.
RNase H is widely present in various organisms,
including bacteria, archaea and eukaryote and most
prokaryotic and eukaryotic genomes contain multiple
RNase H genes. Despite the lack of amino acid sequence
homology, Type 1 and type 2 RNase H share a main-chain
fold and steric configurations of the four acidic
active-site (DEDD) residues and have the same catalytic
mechanism and functions in cells. Eukaryotic RNase H is
longer and more complex than in prokaryotes. Almost all
eukaryotic RNase HI have highly conserved regions at the
N-terminal called hybrid binding domain (HBD). It is
speculated that the HBD contributes to binding the
RNA/DNA hybrid. Prokaryotes and some single-cell
eukaryotes do not require RNase H for viability, but
RNase H is essential in higher eukaryotes. RNase H
knockout mice lack mitochondrial DNA replication and die
as embryos.
Length = 150
Score = 30.6 bits (70), Expect = 0.78
Identities = 11/23 (47%), Positives = 12/23 (52%)
Query: 247 VHFLWCPSHCGIRGNEAVDEAAR 269
V F P H GI GNE D A+
Sbjct: 124 VKFWHVPGHSGIYGNEEADRLAK 146
>gnl|CDD|163664 cd07421, MPP_Rhilphs, Rhilph phosphatases, metallophosphatase
domain. Rhilphs (Rhizobiales/ Rhodobacterales/
Rhodospirillaceae-like phosphatases) are a
phylogenetically distinct group of PPP (phosphoprotein
phosphatases), found only in land plants. They are named
for their close relationship to to PPP phosphatases from
alpha-Proteobacteria, including Rhizobiales,
Rhodobacterales and Rhodospirillaceae. The PPP
(phosphoprotein phosphatase) family, to which the
Rhilphs belong, is one of two known protein phosphatase
families specific for serine and threonine. The PPP
family also includes: PP1, PP2A, PP2B (calcineurin),
PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and
ApA4 hydrolase. The PPP catalytic domain is defined by
three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-).
The PPP enzyme family is ancient with members found in
all eukaryotes, and in most bacterial and archeal
genomes. Dephosphorylation of phosphoserines and
phosphothreonines on target proteins plays a central
role in the regulation of many cellular processes. PPPs
belong to the metallophosphatase (MPP) superfamily.
MPPs are functionally diverse, but all share a conserved
domain with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 304
Score = 31.3 bits (71), Expect = 0.96
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 282 PEDFKPIAASIVKKEWQNQWDNVP-NTNKLKAIKPLIAPW----NTSNQENRTQEIQIKQ 336
PE+ K ++V W ++ D+V T + LIA +++ E + + ++ K
Sbjct: 173 PEEHKKFLRNLV---WVHEEDDVCIETEEGLKHCKLIAVHAGLEKSNSVEEQLKLLRTKD 229
Query: 337 CEIPASTSLTGYANIYNIPP 356
IP L+G N++NIP
Sbjct: 230 TSIPKIAPLSGRKNVWNIPQ 249
>gnl|CDD|100112 cd05469, Transthyretin_like, Transthyretin_like. This domain is
present in the transthyretin-like protein (TLP) family
which includes transthyretin (TTR) and a
transthyretin-related protein called 5-hydroxyisourate
hydrolase (HIUase). TTR and HIUase are homotetrameric
proteins with each subunit consisting of eight
beta-strands arranged in two sheets and a short
alpha-helix. The central channel of the tetramer
contains two independent binding sites, each located
between a pair of subunits. TTR transports thyroid
hormones and retinol in the blood serum of vertebrates
while HIUase catalyzes the second step in a three-step
ureide pathway. TTRs are highly conserved and found only
in vertebrates while the HIUases are found in a wide
range of bacterial, plant, fungal, slime mold and
vertebrate organisms.
Length = 113
Score = 29.4 bits (66), Expect = 1.5
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 397 ESRSYTKVLLLTEFVPIMTELVPILTDPTHRSYTQVLLLTEF 438
+++SY K L +T F E+V D HR YT LLL+ F
Sbjct: 65 DTKSYWKALGITPFHEYA-EVVFTANDSGHRHYTIALLLSPF 105
>gnl|CDD|185427 PTZ00072, PTZ00072, 40S ribosomal protein S13; Provisional.
Length = 148
Score = 28.9 bits (65), Expect = 3.1
Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 95 ISSSDMAPYVRTVPPW--SSPSPPVDLSLGKDRKNDTPS 131
ISSS + PY R P W S S D +K TPS
Sbjct: 8 ISSSAL-PYRRKPPSWLKLSSSEVEDQICKLAKKGLTPS 45
>gnl|CDD|178927 PRK00203, rnhA, ribonuclease H; Reviewed.
Length = 150
Score = 28.3 bits (64), Expect = 5.4
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 238 DLLRSRNKVVHFLWCPSHCGIRGNEAVDEAARN 270
D R+++ + W H G NE DE AR
Sbjct: 107 DAALKRHQI-KWHWVKGHAGHPENERCDELARA 138
>gnl|CDD|197242 cd09144, PLDc_vPLD3_1, Putative catalytic domain, repeat 1, of
vertebrate phospholipase PLD3. Putative catalytic
domain, repeat 1, of phospholipase D3 (PLD3, EC
3.1.4.4). The human protein is also known as Hu-K4 or
HUK4 and it was identified as a human homolog of the
vaccinia virus protein K4, which is encoded by the
HindIII K4L gene. PLD3 is found in many human organs
with highest expression levels found in the central
nervous system. Due to the presence of two copies of the
conserved HKD motif (H-x-K-x(4)-D, where x represents
any amino acid residue), PLD3 has been assigned to the
PLD superfamily although no catalytic activity has been
detected experimentally. PLD3 is a membrane-bound
protein that colocalizes with protein disulfide
isomerase, an endoplasmic reticulum (ER) protein. Like
other homologs of protein K4, PLD3 might alter the lipid
content of associated membranes by selectively
hydrolyzing phosphatidylcholine (PC) into the
corresponding phosphatidic acid, which is thought to be
involved in the regulation of lipid movement.
Length = 172
Score = 28.4 bits (63), Expect = 6.5
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 103 YVR-TVPPWSSPSPPVDLSLGKDRKNDTPSVAFQQLFAGVINSKY 146
YVR V + P P D++ D V ++L GV+++K+
Sbjct: 77 YVRIAVDKPADPKPMEDINALSSYGADVRMVDMRKLTTGVLHTKF 121
>gnl|CDD|200442 cd11286, ADF_cofilin_like, Cofilin, Destrin, and related actin
depolymerizing factors. Actin depolymerization
factor/cofilin-like domains (ADF domains) are present in
a family of essential eukaryotic actin regulatory
proteins. These proteins enhance the turnover rate of
actin, and interact with actin monomers (G-actin) as
well as actin filaments (F-actin), typically with a
preference for ADP-G-actin subunits. The basic function
of cofilin is to promote disassembly of aged actin
filaments. Vertebrates have three isoforms of cofilin:
cofilin-1 (Cfl1, non-muscle cofilin), cofilin-2 (muscle
cofilin), and ADF (destrin). When bound to actin
monomers, cofilins inhibit their spontaneous exchange of
nucleotides. The cooperative binding to (aged)
ADP-F-actin induces a local change in the actin filament
structure and further promotes aging.
Length = 133
Score = 27.5 bits (62), Expect = 7.6
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 241 RSRNKVVHFLWCPSHCGIR 259
R+K+V WCP I+
Sbjct: 75 GKRSKLVFISWCPDTAPIK 93
>gnl|CDD|235978 PRK07234, PRK07234, putative monovalent cation/H+ antiporter
subunit D; Reviewed.
Length = 470
Score = 28.4 bits (64), Expect = 9.3
Identities = 13/36 (36%), Positives = 24/36 (66%), Gaps = 4/36 (11%)
Query: 181 VNSIF-SAELIAIYLCLEAITVHPSDQFLIVSDSRS 215
VN+ F A+LI++Y+ LE +++ FL+V+ R+
Sbjct: 107 VNAAFVCADLISLYVALEVLSI---ATFLLVAYPRT 139
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.133 0.398
Gapped
Lambda K H
0.267 0.0753 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 24,712,574
Number of extensions: 2352520
Number of successful extensions: 1815
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1807
Number of HSP's successfully gapped: 23
Length of query: 491
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 390
Effective length of database: 6,457,848
Effective search space: 2518560720
Effective search space used: 2518560720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.2 bits)