BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9181
(262 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q90963|PRRX2_CHICK Paired mesoderm homeobox protein 2 (Fragment) OS=Gallus gallus
GN=PRRX2 PE=2 SV=1
Length = 165
Score = 78.6 bits (192), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 36/42 (85%), Positives = 39/42 (92%)
Query: 157 TTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQV 198
TTFNS QL ALE+VFERTHYPDAFVREELA++V LSEARVQV
Sbjct: 21 TTFNSSQLQALERVFERTHYPDAFVREELARRVNLSEARVQV 62
>sp|Q99811|PRRX2_HUMAN Paired mesoderm homeobox protein 2 OS=Homo sapiens GN=PRRX2 PE=2
SV=2
Length = 253
Score = 78.6 bits (192), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 36/42 (85%), Positives = 39/42 (92%)
Query: 157 TTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQV 198
TTFNS QL ALE+VFERTHYPDAFVREELA++V LSEARVQV
Sbjct: 109 TTFNSSQLQALERVFERTHYPDAFVREELARRVNLSEARVQV 150
>sp|Q06348|PRRX2_MOUSE Paired mesoderm homeobox protein 2 OS=Mus musculus GN=Prrx2 PE=2
SV=2
Length = 247
Score = 78.2 bits (191), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 36/42 (85%), Positives = 39/42 (92%)
Query: 157 TTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQV 198
TTFNS QL ALE+VFERTHYPDAFVREELA++V LSEARVQV
Sbjct: 103 TTFNSSQLQALERVFERTHYPDAFVREELARRVNLSEARVQV 144
>sp|O35137|ALX4_MOUSE Homeobox protein aristaless-like 4 OS=Mus musculus GN=Alx4 PE=1
SV=1
Length = 399
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/68 (54%), Positives = 47/68 (69%)
Query: 131 QMSIRVKSENDDYDYERRKPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVC 190
+ S + S + D E K K RRNRTTF S+QL LEKVF++THYPD + RE+LA +
Sbjct: 181 RASAEIPSPLEKTDSESNKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTD 240
Query: 191 LSEARVQV 198
L+EARVQV
Sbjct: 241 LTEARVQV 248
>sp|Q4LAL6|ALX4_BOVIN Homeobox protein aristaless-like 4 OS=Bos taurus GN=ALX4 PE=2 SV=1
Length = 397
Score = 76.6 bits (187), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/68 (54%), Positives = 47/68 (69%)
Query: 131 QMSIRVKSENDDYDYERRKPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVC 190
+ S + S + D E K K RRNRTTF S+QL LEKVF++THYPD + RE+LA +
Sbjct: 179 RASADLPSPMEKADSESNKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTD 238
Query: 191 LSEARVQV 198
L+EARVQV
Sbjct: 239 LTEARVQV 246
>sp|Q05437|PRRX1_CHICK Paired mesoderm homeobox protein 1 OS=Gallus gallus GN=PRRX1 PE=1
SV=2
Length = 245
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/42 (80%), Positives = 39/42 (92%)
Query: 157 TTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQV 198
TTFNS QL ALE+VFERTHYPDAFVRE+LA++V L+EARVQV
Sbjct: 99 TTFNSSQLQALERVFERTHYPDAFVREDLARRVNLTEARVQV 140
>sp|Q06453|AL_DROME Homeobox protein aristaless OS=Drosophila melanogaster GN=al PE=1
SV=2
Length = 408
Score = 75.9 bits (185), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/60 (60%), Positives = 43/60 (71%), Gaps = 3/60 (5%)
Query: 139 ENDDYDYERRKPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQV 198
E D+Y +R++ RR RTTF S QL LEK F RTHYPD F REELA K+ L+EAR+QV
Sbjct: 75 EADEYAPKRKQ---RRYRTTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQV 131
>sp|P63014|PRRX1_RAT Paired mesoderm homeobox protein 1 OS=Rattus norvegicus GN=Prrx1
PE=2 SV=1
Length = 245
Score = 75.9 bits (185), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/42 (80%), Positives = 39/42 (92%)
Query: 157 TTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQV 198
TTFNS QL ALE+VFERTHYPDAFVRE+LA++V L+EARVQV
Sbjct: 99 TTFNSSQLQALERVFERTHYPDAFVREDLARRVNLTEARVQV 140
>sp|P63013|PRRX1_MOUSE Paired mesoderm homeobox protein 1 OS=Mus musculus GN=Prrx1 PE=2
SV=1
Length = 245
Score = 75.9 bits (185), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/42 (80%), Positives = 39/42 (92%)
Query: 157 TTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQV 198
TTFNS QL ALE+VFERTHYPDAFVRE+LA++V L+EARVQV
Sbjct: 99 TTFNSSQLQALERVFERTHYPDAFVREDLARRVNLTEARVQV 140
>sp|P54821|PRRX1_HUMAN Paired mesoderm homeobox protein 1 OS=Homo sapiens GN=PRRX1 PE=1
SV=2
Length = 245
Score = 75.9 bits (185), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/42 (80%), Positives = 39/42 (92%)
Query: 157 TTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQV 198
TTFNS QL ALE+VFERTHYPDAFVRE+LA++V L+EARVQV
Sbjct: 99 TTFNSSQLQALERVFERTHYPDAFVREDLARRVNLTEARVQV 140
>sp|Q9H161|ALX4_HUMAN Homeobox protein aristaless-like 4 OS=Homo sapiens GN=ALX4 PE=1
SV=2
Length = 411
Score = 75.5 bits (184), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/55 (63%), Positives = 42/55 (76%)
Query: 144 DYERRKPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQV 198
D E K K RRNRTTF S+QL LEKVF++THYPD + RE+LA + L+EARVQV
Sbjct: 206 DSESNKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQV 260
>sp|O42356|RX1_DANRE Retinal homeobox protein Rx1 OS=Danio rerio GN=rx1 PE=2 SV=2
Length = 330
Score = 74.3 bits (181), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
Query: 127 FAKLQMSIRVKSENDD-YDYERRKPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREEL 185
L+ +I S++ D D E+ K K RRNRTTF ++QL+ LE+ FE++HYPD + REEL
Sbjct: 111 LGDLRKAIESDSKSPDSADGEQPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREEL 170
Query: 186 AKKVCLSEARVQV 198
A KV L E RVQV
Sbjct: 171 AMKVNLPEVRVQV 183
>sp|Q9W2Q1|RX_DROME Retinal homeobox protein Rx OS=Drosophila melanogaster GN=Rx PE=2
SV=2
Length = 873
Score = 73.9 bits (180), Expect = 1e-12, Method: Composition-based stats.
Identities = 34/61 (55%), Positives = 44/61 (72%)
Query: 138 SENDDYDYERRKPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQ 197
S+++ D K K RRNRTTF ++QL+ LE+ FE++HYPD + REELA KV L E RVQ
Sbjct: 514 SDDEGQDDNCAKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 573
Query: 198 V 198
V
Sbjct: 574 V 574
>sp|Q9I9A2|RX2_ORYLA Retinal homeobox protein Rx2 OS=Oryzias latipes GN=rx2 PE=2 SV=1
Length = 327
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 51/98 (52%), Gaps = 24/98 (24%)
Query: 146 ERRKPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQV------- 198
E K K RRNRTTF ++QL+ LE+ FE++HYPD + REELA KV L E RVQV
Sbjct: 131 EHGKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELATKVNLPEVRVQVWFQNRRA 190
Query: 199 -----------------SMMILFVRRPLALWVAEYKNP 219
S M+ F R P+ V + NP
Sbjct: 191 KWRRQEKMDTSTMKLHDSPMLSFNRPPMPPSVGQVANP 228
>sp|Q9I9D5|RX1_ASTFA Retinal homeobox protein Rx1 OS=Astyanax fasciatus GN=rx1 PE=2 SV=1
Length = 334
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/55 (61%), Positives = 42/55 (76%)
Query: 144 DYERRKPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQV 198
D E+ K K RRNRTTF ++QL+ LE+ FE++HYPD + REELA KV L E RVQV
Sbjct: 134 DEEQPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQV 188
>sp|O15266|SHOX_HUMAN Short stature homeobox protein OS=Homo sapiens GN=SHOX PE=1 SV=1
Length = 292
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/63 (58%), Positives = 49/63 (77%), Gaps = 3/63 (4%)
Query: 136 VKSENDDYDYERRKPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEAR 195
VKSE++D + K K RR+RT F QLN LE++F+ THYPDAF+REEL++++ LSEAR
Sbjct: 104 VKSEDEDG---QTKLKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEAR 160
Query: 196 VQV 198
VQV
Sbjct: 161 VQV 163
>sp|O95076|ALX3_HUMAN Homeobox protein aristaless-like 3 OS=Homo sapiens GN=ALX3 PE=1
SV=2
Length = 343
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Query: 109 QGGRGEDESKLTSKRHFWFAKLQMSIRVKSENDDYDYERRKPKPRRNRTTFNSHQLNALE 168
+GG + S L A L + + D + + K K RRNRTTF++ QL LE
Sbjct: 111 RGGPRDGPSNLQGSPGPCLASLHLPL-SPGLPDSMELAKNKSKKRRNRTTFSTFQLEELE 169
Query: 169 KVFERTHYPDAFVREELAKKVCLSEARVQV 198
KVF++THYPD + RE+LA + L+EARVQV
Sbjct: 170 KVFQKTHYPDVYAREQLALRTDLTEARVQV 199
>sp|P23760|PAX3_HUMAN Paired box protein Pax-3 OS=Homo sapiens GN=PAX3 PE=1 SV=2
Length = 479
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 43/63 (68%), Gaps = 3/63 (4%)
Query: 139 ENDDYDYERRKP---KPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEAR 195
E D D E P K RR+RTTF + QL LE+ FERTHYPD + REELA++ L+EAR
Sbjct: 203 EGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEAR 262
Query: 196 VQV 198
VQV
Sbjct: 263 VQV 265
>sp|Q28DP6|PAX3_XENTR Paired box protein Pax-3 OS=Xenopus tropicalis GN=pax3 PE=2 SV=2
Length = 461
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 43/63 (68%), Gaps = 3/63 (4%)
Query: 139 ENDDYDYERRKP---KPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEAR 195
E D D E P K RR+RTTF + QL LE+ FERTHYPD + REELA++ L+EAR
Sbjct: 180 EGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEAR 239
Query: 196 VQV 198
VQV
Sbjct: 240 VQV 242
>sp|Q9PVX0|RX2_CHICK Retinal homeobox protein Rx2 OS=Gallus gallus GN=RX2 PE=2 SV=1
Length = 317
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/55 (61%), Positives = 42/55 (76%)
Query: 144 DYERRKPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQV 198
D E+ K K RRNRTTF ++QL+ LE+ FE++HYPD + REELA KV L E RVQV
Sbjct: 114 DEEQPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQV 168
>sp|P24610|PAX3_MOUSE Paired box protein Pax-3 OS=Mus musculus GN=Pax3 PE=1 SV=2
Length = 479
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 43/63 (68%), Gaps = 3/63 (4%)
Query: 139 ENDDYDYERRKP---KPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEAR 195
E D D E P K RR+RTTF + QL LE+ FERTHYPD + REELA++ L+EAR
Sbjct: 203 EGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEAR 262
Query: 196 VQV 198
VQV
Sbjct: 263 VQV 265
>sp|Q645N4|PAX3A_XENLA Paired box protein Pax-3-A OS=Xenopus laevis GN=pax3-a PE=2 SV=1
Length = 484
Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 43/63 (68%), Gaps = 3/63 (4%)
Query: 139 ENDDYDYERRKP---KPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEAR 195
E D D E P K RR+RTTF + QL LE+ FERTHYPD + REELA++ L+EAR
Sbjct: 204 EGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEAR 263
Query: 196 VQV 198
VQV
Sbjct: 264 VQV 266
>sp|Q0IH87|PAX3B_XENLA Paired box protein Pax-3-B OS=Xenopus laevis GN=pax3-b PE=2 SV=2
Length = 483
Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 43/63 (68%), Gaps = 3/63 (4%)
Query: 139 ENDDYDYERRKP---KPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEAR 195
E D D E P K RR+RTTF + QL LE+ FERTHYPD + REELA++ L+EAR
Sbjct: 203 EGSDIDSEPDLPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEAR 262
Query: 196 VQV 198
VQV
Sbjct: 263 VQV 265
>sp|P23759|PAX7_HUMAN Paired box protein Pax-7 OS=Homo sapiens GN=PAX7 PE=2 SV=3
Length = 520
Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 43/63 (68%), Gaps = 3/63 (4%)
Query: 139 ENDDYDYERRKP---KPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEAR 195
E D + E P K RR+RTTF + QL LEK FERTHYPD + REELA++ L+EAR
Sbjct: 201 EGSDVESEPDLPLKRKQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEAR 260
Query: 196 VQV 198
VQV
Sbjct: 261 VQV 263
>sp|Q8BYH0|DRGX_MOUSE Dorsal root ganglia homeobox protein OS=Mus musculus GN=Drgx PE=1
SV=2
Length = 263
Score = 71.6 bits (174), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/59 (64%), Positives = 43/59 (72%), Gaps = 4/59 (6%)
Query: 142 DYD--YERRKPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQV 198
D+D + RRK RRNRTTF QL ALE VF +THYPD F REELA K+ L+EARVQV
Sbjct: 23 DFDDGFLRRKQ--RRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQV 79
>sp|A6NNA5|DRGX_HUMAN Dorsal root ganglia homeobox protein OS=Homo sapiens GN=DRGX PE=2
SV=1
Length = 263
Score = 71.6 bits (174), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/59 (64%), Positives = 43/59 (72%), Gaps = 4/59 (6%)
Query: 142 DYD--YERRKPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQV 198
D+D + RRK RRNRTTF QL ALE VF +THYPD F REELA K+ L+EARVQV
Sbjct: 23 DFDDGFLRRKQ--RRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQV 79
>sp|P47239|PAX7_MOUSE Paired box protein Pax-7 OS=Mus musculus GN=Pax7 PE=2 SV=2
Length = 503
Score = 71.2 bits (173), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 43/63 (68%), Gaps = 3/63 (4%)
Query: 139 ENDDYDYERRKP---KPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEAR 195
E D + E P K RR+RTTF + QL LEK FERTHYPD + REELA++ L+EAR
Sbjct: 199 EGSDVESEPDLPLKRKQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEAR 258
Query: 196 VQV 198
VQV
Sbjct: 259 VQV 261
>sp|P09082|GSB_DROME Protein gooseberry OS=Drosophila melanogaster GN=gsb PE=2 SV=1
Length = 427
Score = 71.2 bits (173), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 33/62 (53%), Positives = 46/62 (74%)
Query: 137 KSENDDYDYERRKPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARV 196
+SE+D + K K RR+RTTF++ Q++ALE++F RT YPD + REELA+ L+EARV
Sbjct: 170 ESEDDAEPSVQLKRKQRRSRTTFSNDQIDALERIFARTQYPDVYTREELAQSTGLTEARV 229
Query: 197 QV 198
QV
Sbjct: 230 QV 231
>sp|O42357|RX2_DANRE Retinal homeobox protein Rx2 OS=Danio rerio GN=rx2 PE=2 SV=1
Length = 327
Score = 71.2 bits (173), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 33/55 (60%), Positives = 42/55 (76%)
Query: 144 DYERRKPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQV 198
D ++ K K RRNRTTF ++QL+ LE+ FE++HYPD + REELA KV L E RVQV
Sbjct: 127 DEDQPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQV 181
>sp|P70390|SHOX2_MOUSE Short stature homeobox protein 2 OS=Mus musculus GN=Shox2 PE=2 SV=1
Length = 331
Score = 71.2 bits (173), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 50/72 (69%), Gaps = 4/72 (5%)
Query: 131 QMSIRVKSENDDY----DYERRKPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELA 186
++S +K DD D + K K RR+RT F QLN LE++F+ THYPDAF+REEL+
Sbjct: 115 EVSPELKDRKDDAKGMEDEGQTKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELS 174
Query: 187 KKVCLSEARVQV 198
+++ LSEARVQV
Sbjct: 175 QRLGLSEARVQV 186
>sp|O42567|RXB_XENLA Retinal homeobox protein Rx-B OS=Xenopus laevis GN=rax-b PE=2 SV=2
Length = 325
Score = 70.9 bits (172), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 33/55 (60%), Positives = 42/55 (76%)
Query: 144 DYERRKPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQV 198
D ++ K K RRNRTTF ++QL+ LE+ FE++HYPD + REELA KV L E RVQV
Sbjct: 122 DEQQPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQV 176
>sp|O42201|RXA_XENLA Retinal homeobox protein Rx-A OS=Xenopus laevis GN=rax-a PE=2 SV=2
Length = 322
Score = 70.9 bits (172), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 33/55 (60%), Positives = 42/55 (76%)
Query: 144 DYERRKPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQV 198
D ++ K K RRNRTTF ++QL+ LE+ FE++HYPD + REELA KV L E RVQV
Sbjct: 122 DEQQPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQV 176
>sp|Q62798|DRGX_RAT Dorsal root ganglia homeobox protein OS=Rattus norvegicus GN=Drgx
PE=2 SV=1
Length = 263
Score = 70.9 bits (172), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 38/59 (64%), Positives = 43/59 (72%), Gaps = 4/59 (6%)
Query: 142 DYD--YERRKPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQV 198
D+D + RRK RRNRTTF QL ALE VF +THYPD F REELA K+ L+EARVQV
Sbjct: 23 DFDDGFLRRKQ--RRNRTTFALQQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQV 79
>sp|P63016|PAX6_RAT Paired box protein Pax-6 OS=Rattus norvegicus GN=Pax6 PE=2 SV=1
Length = 422
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 54/92 (58%), Gaps = 13/92 (14%)
Query: 107 QSQGGRGEDESKLTSKRHFWFAKLQMSIRVKSENDDYDYERRKPKPRRNRTTFNSHQLNA 166
Q Q G+GE+ + ++S + QM +++K K +RNRT+F Q+ A
Sbjct: 178 QQQEGQGENTNSISSNGED-SDEAQMRLQLKR------------KLQRNRTSFTQEQIEA 224
Query: 167 LEKVFERTHYPDAFVREELAKKVCLSEARVQV 198
LEK FERTHYPD F RE LA K+ L EAR+QV
Sbjct: 225 LEKEFERTHYPDVFARERLAAKIDLPEARIQV 256
>sp|O18381|PAX6_DROME Paired box protein Pax-6 OS=Drosophila melanogaster GN=ey PE=2 SV=3
Length = 857
Score = 70.5 bits (171), Expect = 1e-11, Method: Composition-based stats.
Identities = 31/50 (62%), Positives = 39/50 (78%)
Query: 149 KPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQV 198
K K +RNRT+F + Q+++LEK FERTHYPD F RE LA K+ L EAR+QV
Sbjct: 427 KRKLQRNRTSFTNDQIDSLEKEFERTHYPDVFARERLAGKIGLPEARIQV 476
>sp|O70137|ALX3_MOUSE Homeobox protein aristaless-like 3 OS=Mus musculus GN=Alx3 PE=2
SV=1
Length = 343
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 54/90 (60%), Gaps = 1/90 (1%)
Query: 109 QGGRGEDESKLTSKRHFWFAKLQMSIRVKSENDDYDYERRKPKPRRNRTTFNSHQLNALE 168
+GG + S + + A L + + D + + K K RRNRTTF++ QL LE
Sbjct: 111 RGGPRDGPSNVQASPGPCLASLSVPL-SPGLPDSMELAKTKSKKRRNRTTFSTFQLEELE 169
Query: 169 KVFERTHYPDAFVREELAKKVCLSEARVQV 198
KVF++THYPD + RE+LA + L+EARVQV
Sbjct: 170 KVFQKTHYPDVYAREQLALRTDLTEARVQV 199
>sp|O73917|PAX6_ORYLA Paired box protein Pax-6 OS=Oryzias latipes GN=pax6 PE=2 SV=1
Length = 437
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 53/92 (57%), Gaps = 13/92 (14%)
Query: 107 QSQGGRGEDESKLTSKRHFWFAKLQMSIRVKSENDDYDYERRKPKPRRNRTTFNSHQLNA 166
Q Q G GE+ + ++S + QM +++K K +RNRT+F Q+ A
Sbjct: 197 QQQDGAGENTNSISSNGED-SEETQMRLQLKR------------KLQRNRTSFTQEQIEA 243
Query: 167 LEKVFERTHYPDAFVREELAKKVCLSEARVQV 198
LEK FERTHYPD F RE LA K+ L EAR+QV
Sbjct: 244 LEKEFERTHYPDVFARERLAAKIDLPEARIQV 275
>sp|Q9PVY0|RX1_CHICK Retinal homeobox protein Rx1 OS=Gallus gallus GN=RX1 PE=2 SV=1
Length = 228
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/53 (62%), Positives = 41/53 (77%)
Query: 146 ERRKPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQV 198
E+ K K RRNRTTF ++QL+ LE+ FE++HYPD + REELA KV L E RVQV
Sbjct: 30 EQPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQV 82
>sp|Q9Y2V3|RX_HUMAN Retinal homeobox protein Rx OS=Homo sapiens GN=RAX PE=1 SV=2
Length = 346
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/55 (60%), Positives = 42/55 (76%)
Query: 144 DYERRKPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQV 198
+ E+ K K RRNRTTF ++QL+ LE+ FE++HYPD + REELA KV L E RVQV
Sbjct: 128 EEEQPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQV 182
>sp|O35602|RX_MOUSE Retinal homeobox protein Rx OS=Mus musculus GN=Rax PE=2 SV=2
Length = 342
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/55 (60%), Positives = 41/55 (74%)
Query: 144 DYERRKPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQV 198
+ E K K RRNRTTF ++QL+ LE+ FE++HYPD + REELA KV L E RVQV
Sbjct: 128 EEEPPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQV 182
>sp|Q9JLT7|RX_RAT Retinal homeobox protein Rx OS=Rattus norvegicus GN=Rax PE=2 SV=1
Length = 342
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/55 (60%), Positives = 41/55 (74%)
Query: 144 DYERRKPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQV 198
+ E K K RRNRTTF ++QL+ LE+ FE++HYPD + REELA KV L E RVQV
Sbjct: 129 EEEPPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQV 183
>sp|O42358|RX3_DANRE Retinal homeobox protein Rx3 OS=Danio rerio GN=rx3 PE=2 SV=1
Length = 292
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/55 (61%), Positives = 40/55 (72%)
Query: 144 DYERRKPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQV 198
D E K K RRNRTTF + QL+ LE+ FE++HYPD + REELA KV L E RVQV
Sbjct: 98 DDENPKKKHRRNRTTFTTFQLHELERAFEKSHYPDVYSREELALKVNLPEVRVQV 152
>sp|P47237|PAX6_CHICK Paired box protein Pax-6 (Fragment) OS=Gallus gallus GN=PAX6 PE=1
SV=1
Length = 216
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/46 (65%), Positives = 35/46 (76%)
Query: 153 RRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQV 198
+RNRT+F Q+ ALEK FERTHYPD F RE LA K+ L EAR+QV
Sbjct: 11 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQV 56
>sp|O35750|SHOX2_RAT Short stature homeobox protein 2 (Fragment) OS=Rattus norvegicus
GN=Shox2 PE=2 SV=2
Length = 237
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 50/72 (69%), Gaps = 4/72 (5%)
Query: 131 QMSIRVKSENDDY----DYERRKPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELA 186
++S +K +D D + K K RR+RT F QLN LE++F+ THYPDAF+REEL+
Sbjct: 21 EVSPELKDRKEDAKGMEDEGQTKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELS 80
Query: 187 KKVCLSEARVQV 198
+++ LSEARVQV
Sbjct: 81 QRLGLSEARVQV 92
>sp|P63015|PAX6_MOUSE Paired box protein Pax-6 OS=Mus musculus GN=Pax6 PE=1 SV=1
Length = 422
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 53/92 (57%), Gaps = 13/92 (14%)
Query: 107 QSQGGRGEDESKLTSKRHFWFAKLQMSIRVKSENDDYDYERRKPKPRRNRTTFNSHQLNA 166
Q Q G GE+ + ++S + QM +++K K +RNRT+F Q+ A
Sbjct: 178 QQQEGGGENTNSISSNGED-SDEAQMRLQLKR------------KLQRNRTSFTQEQIEA 224
Query: 167 LEKVFERTHYPDAFVREELAKKVCLSEARVQV 198
LEK FERTHYPD F RE LA K+ L EAR+QV
Sbjct: 225 LEKEFERTHYPDVFARERLAAKIDLPEARIQV 256
>sp|P26367|PAX6_HUMAN Paired box protein Pax-6 OS=Homo sapiens GN=PAX6 PE=1 SV=2
Length = 422
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 53/92 (57%), Gaps = 13/92 (14%)
Query: 107 QSQGGRGEDESKLTSKRHFWFAKLQMSIRVKSENDDYDYERRKPKPRRNRTTFNSHQLNA 166
Q Q G GE+ + ++S + QM +++K K +RNRT+F Q+ A
Sbjct: 178 QQQEGGGENTNSISSNGED-SDEAQMRLQLKR------------KLQRNRTSFTQEQIEA 224
Query: 167 LEKVFERTHYPDAFVREELAKKVCLSEARVQV 198
LEK FERTHYPD F RE LA K+ L EAR+QV
Sbjct: 225 LEKEFERTHYPDVFARERLAAKIDLPEARIQV 256
>sp|Q1LZF1|PAX6_BOVIN Paired box protein Pax-6 OS=Bos taurus GN=PAX6 PE=2 SV=1
Length = 422
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 53/92 (57%), Gaps = 13/92 (14%)
Query: 107 QSQGGRGEDESKLTSKRHFWFAKLQMSIRVKSENDDYDYERRKPKPRRNRTTFNSHQLNA 166
Q Q G GE+ + ++S + QM +++K K +RNRT+F Q+ A
Sbjct: 178 QQQEGGGENTNSISSNGED-SDEAQMRLQLKR------------KLQRNRTSFTQEQIEA 224
Query: 167 LEKVFERTHYPDAFVREELAKKVCLSEARVQV 198
LEK FERTHYPD F RE LA K+ L EAR+QV
Sbjct: 225 LEKEFERTHYPDVFARERLAAKIDLPEARIQV 256
>sp|O60902|SHOX2_HUMAN Short stature homeobox protein 2 OS=Homo sapiens GN=SHOX2 PE=2 SV=4
Length = 331
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 50/72 (69%), Gaps = 4/72 (5%)
Query: 131 QMSIRVKSENDDY----DYERRKPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELA 186
++S +K +D D + K K RR+RT F QLN LE++F+ THYPDAF+REEL+
Sbjct: 115 EVSPELKDRKEDAKGMEDEGQTKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELS 174
Query: 187 KKVCLSEARVQV 198
+++ LSEARVQV
Sbjct: 175 QRLGLSEARVQV 186
>sp|P55864|PAX6_XENLA Paired box protein Pax-6 OS=Xenopus laevis GN=pax6 PE=2 SV=1
Length = 422
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/46 (65%), Positives = 35/46 (76%)
Query: 153 RRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQV 198
+RNRT+F Q+ ALEK FERTHYPD F RE LA K+ L EAR+QV
Sbjct: 211 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQV 256
>sp|P47238|PAX6_COTJA Paired box protein Pax-6 OS=Coturnix coturnix japonica GN=PAX6 PE=2
SV=1
Length = 416
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/46 (65%), Positives = 35/46 (76%)
Query: 153 RRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQV 198
+RNRT+F Q+ ALEK FERTHYPD F RE LA K+ L EAR+QV
Sbjct: 211 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQV 256
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.134 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,868,889
Number of Sequences: 539616
Number of extensions: 3532938
Number of successful extensions: 9501
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 8917
Number of HSP's gapped (non-prelim): 630
length of query: 262
length of database: 191,569,459
effective HSP length: 115
effective length of query: 147
effective length of database: 129,513,619
effective search space: 19038501993
effective search space used: 19038501993
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)