Query psy9181
Match_columns 262
No_of_seqs 230 out of 1777
Neff 6.0
Searched_HMMs 29240
Date Fri Aug 16 21:01:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9181.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9181hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dmt_A Homeobox protein BARH-l 99.8 5.9E-21 2E-25 143.0 3.9 62 146-207 11-72 (80)
2 1wh5_A ZF-HD homeobox family p 99.8 1.5E-20 5E-25 141.4 5.5 61 148-208 13-77 (80)
3 2kt0_A Nanog, homeobox protein 99.8 1.7E-20 5.7E-25 141.4 4.8 62 147-208 17-78 (84)
4 1wh7_A ZF-HD homeobox family p 99.8 2.4E-20 8.1E-25 140.4 5.2 61 147-208 12-77 (80)
5 2cra_A Homeobox protein HOX-B1 99.8 1.2E-20 4.1E-25 137.8 3.4 61 149-209 4-64 (70)
6 2cue_A Paired box protein PAX6 99.8 3.6E-20 1.2E-24 138.7 5.0 65 149-213 4-68 (80)
7 2djn_A Homeobox protein DLX-5; 99.8 2.6E-20 8.8E-25 136.1 3.2 60 149-208 4-63 (70)
8 2vi6_A Homeobox protein nanog; 99.8 3E-20 1E-24 132.5 2.6 59 151-209 2-60 (62)
9 2dms_A Homeobox protein OTX2; 99.8 1.1E-19 3.9E-24 135.9 5.9 65 149-218 4-68 (80)
10 2hdd_A Protein (engrailed home 99.8 3.1E-20 1E-24 132.1 1.8 56 152-207 3-58 (61)
11 1puf_A HOX-1.7, homeobox prote 99.8 9.2E-20 3.2E-24 135.5 4.1 61 149-209 10-70 (77)
12 2dmu_A Homeobox protein goosec 99.8 1.2E-19 4E-24 132.4 4.6 59 149-207 4-62 (70)
13 2da3_A Alpha-fetoprotein enhan 99.8 9.1E-20 3.1E-24 136.0 4.0 60 148-207 13-72 (80)
14 1ig7_A Homeotic protein MSX-1; 99.8 6.1E-20 2.1E-24 129.1 2.7 56 153-208 1-56 (58)
15 2dmq_A LIM/homeobox protein LH 99.8 2.7E-19 9.3E-24 133.6 6.1 59 149-207 4-62 (80)
16 1jgg_A Segmentation protein EV 99.8 6.2E-20 2.1E-24 130.1 2.1 56 153-208 2-57 (60)
17 2da2_A Alpha-fetoprotein enhan 99.8 1.1E-19 3.7E-24 132.5 3.2 60 148-207 3-62 (70)
18 1nk2_P Homeobox protein VND; h 99.8 2.6E-19 9E-24 133.1 5.3 61 148-208 5-65 (77)
19 2da1_A Alpha-fetoprotein enhan 99.8 9.8E-20 3.4E-24 132.7 2.7 59 149-207 4-62 (70)
20 1zq3_P PRD-4, homeotic bicoid 99.8 2.2E-19 7.5E-24 130.5 4.4 56 152-207 2-57 (68)
21 1bw5_A ISL-1HD, insulin gene e 99.8 8.8E-20 3E-24 131.7 2.2 58 151-208 2-59 (66)
22 2h1k_A IPF-1, pancreatic and d 99.8 1.6E-19 5.5E-24 129.2 3.4 57 151-207 2-58 (63)
23 2e1o_A Homeobox protein PRH; D 99.8 4.4E-19 1.5E-23 129.5 5.2 59 149-207 4-62 (70)
24 1ftt_A TTF-1 HD, thyroid trans 99.8 3.9E-19 1.3E-23 129.2 4.4 63 152-219 2-64 (68)
25 1fjl_A Paired protein; DNA-bin 99.8 3.5E-19 1.2E-23 133.5 4.0 60 148-207 14-73 (81)
26 1ahd_P Antennapedia protein mu 99.8 2.9E-19 9.7E-24 130.0 3.4 62 152-218 2-63 (68)
27 2l7z_A Homeobox protein HOX-A1 99.7 4.4E-19 1.5E-23 130.7 4.1 59 149-207 4-62 (73)
28 3rkq_A Homeobox protein NKX-2. 99.7 2.4E-19 8E-24 125.5 2.3 56 152-207 2-57 (58)
29 1akh_A Protein (mating-type pr 99.7 1.8E-19 6E-24 127.9 1.7 59 149-207 2-60 (61)
30 2m0c_A Homeobox protein arista 99.7 4.1E-19 1.4E-23 130.7 3.6 65 149-218 6-70 (75)
31 1yz8_P Pituitary homeobox 2; D 99.7 2.2E-19 7.7E-24 130.3 2.0 63 151-218 2-64 (68)
32 3a01_A Homeodomain-containing 99.7 1E-18 3.4E-23 134.7 5.6 60 148-207 13-72 (93)
33 3nar_A ZHX1, zinc fingers and 99.7 2.8E-19 9.6E-24 138.4 1.9 63 148-210 21-83 (96)
34 2r5y_A Homeotic protein sex co 99.7 5.3E-19 1.8E-23 134.6 3.0 59 149-207 25-83 (88)
35 2da4_A Hypothetical protein DK 99.7 7.8E-19 2.7E-23 131.3 3.3 59 149-207 5-67 (80)
36 1uhs_A HOP, homeodomain only p 99.7 1.9E-18 6.6E-23 126.7 5.1 62 153-219 2-64 (72)
37 1b8i_A Ultrabithorax, protein 99.7 6.5E-19 2.2E-23 132.3 2.6 59 149-207 17-75 (81)
38 2hi3_A Homeodomain-only protei 99.7 2.3E-18 8E-23 126.7 5.4 62 152-218 2-64 (73)
39 2k40_A Homeobox expressed in E 99.7 1.2E-18 4.2E-23 126.0 2.9 56 152-207 1-56 (67)
40 2da5_A Zinc fingers and homeob 99.7 3.3E-18 1.1E-22 126.7 5.2 54 154-207 9-62 (75)
41 2ecc_A Homeobox and leucine zi 99.7 3E-18 1E-22 127.8 4.9 60 154-218 5-64 (76)
42 2cuf_A FLJ21616 protein; homeo 99.7 3.4E-18 1.2E-22 131.9 5.2 66 148-218 3-83 (95)
43 3a02_A Homeobox protein arista 99.7 1.1E-18 3.9E-23 123.5 1.9 53 155-207 2-54 (60)
44 1b72_A Protein (homeobox prote 99.7 2.3E-18 7.9E-23 133.4 3.8 58 150-207 32-89 (97)
45 1wi3_A DNA-binding protein SAT 99.7 2.6E-18 8.7E-23 125.1 3.7 59 148-206 3-62 (71)
46 1du6_A PBX1, homeobox protein 99.7 2.3E-18 7.8E-23 123.4 2.9 59 151-209 2-63 (64)
47 2ly9_A Zinc fingers and homeob 99.7 3.4E-18 1.2E-22 125.8 3.6 57 151-207 5-61 (74)
48 1au7_A Protein PIT-1, GHF-1; c 99.7 1.6E-18 5.4E-23 143.9 1.9 63 148-210 83-145 (146)
49 2dn0_A Zinc fingers and homeob 99.7 2.4E-18 8.2E-23 127.6 2.3 56 152-207 8-63 (76)
50 1e3o_C Octamer-binding transcr 99.7 2.3E-18 7.9E-23 144.8 1.6 60 150-209 99-158 (160)
51 3a03_A T-cell leukemia homeobo 99.7 5E-18 1.7E-22 118.8 3.0 51 157-207 2-52 (56)
52 1x2n_A Homeobox protein pknox1 99.7 1.1E-17 3.7E-22 122.9 4.8 59 149-207 4-65 (73)
53 2xsd_C POU domain, class 3, tr 99.7 2.5E-18 8.4E-23 145.4 1.4 63 147-209 94-156 (164)
54 2dmp_A Zinc fingers and homeob 99.7 6.7E-18 2.3E-22 129.1 2.9 50 158-207 19-68 (89)
55 2cqx_A LAG1 longevity assuranc 99.7 2.9E-18 1E-22 126.4 0.3 56 152-207 8-64 (72)
56 2ecb_A Zinc fingers and homeob 99.7 2.3E-17 8E-22 126.5 5.3 56 158-218 17-72 (89)
57 1lfb_A Liver transcription fac 99.7 5.6E-18 1.9E-22 132.3 1.7 60 149-208 6-86 (99)
58 1k61_A Mating-type protein alp 99.7 8.8E-18 3E-22 118.8 2.0 53 155-207 1-56 (60)
59 1puf_B PRE-B-cell leukemia tra 99.7 1.9E-17 6.6E-22 121.6 3.8 56 152-207 1-59 (73)
60 3d1n_I POU domain, class 6, tr 99.7 1.2E-17 4.2E-22 139.0 3.1 62 148-209 89-150 (151)
61 2dmn_A Homeobox protein TGIF2L 99.7 4.9E-17 1.7E-21 122.7 6.0 59 149-207 4-65 (83)
62 2da6_A Hepatocyte nuclear fact 99.7 2.3E-17 7.8E-22 129.3 4.0 59 149-207 3-82 (102)
63 2e19_A Transcription factor 8; 99.7 1.6E-17 5.4E-22 119.8 2.0 52 157-208 8-59 (64)
64 1mnm_C Protein (MAT alpha-2 tr 99.7 2.3E-17 7.8E-22 125.3 2.6 57 151-207 26-85 (87)
65 1le8_B Mating-type protein alp 99.7 2E-17 6.8E-22 124.7 2.1 56 153-208 3-61 (83)
66 1b72_B Protein (PBX1); homeodo 99.6 3.7E-17 1.3E-21 123.8 3.2 56 153-208 2-60 (87)
67 2l9r_A Homeobox protein NKX-3. 99.6 2E-17 7E-22 121.1 1.5 52 157-208 9-60 (69)
68 2d5v_A Hepatocyte nuclear fact 99.6 4.5E-17 1.5E-21 137.0 2.1 60 149-208 94-153 (164)
69 3l1p_A POU domain, class 5, tr 99.6 4.6E-17 1.6E-21 136.3 1.5 59 150-208 94-152 (155)
70 1x2m_A LAG1 longevity assuranc 99.6 3.4E-17 1.2E-21 118.3 0.4 48 161-208 9-57 (64)
71 3nau_A Zinc fingers and homeob 99.6 1.3E-16 4.3E-21 115.7 2.7 47 160-206 12-58 (66)
72 3k2a_A Homeobox protein MEIS2; 99.5 1.5E-15 5.3E-20 110.1 1.0 52 158-209 4-58 (67)
73 1ic8_A Hepatocyte nuclear fact 99.5 9E-16 3.1E-20 133.0 -0.6 60 148-207 111-191 (194)
74 2h8r_A Hepatocyte nuclear fact 99.4 2.1E-14 7.2E-19 126.4 2.5 62 146-207 136-218 (221)
75 2da7_A Zinc finger homeobox pr 99.3 1.4E-13 4.8E-18 100.6 1.1 46 161-206 14-59 (71)
76 2lk2_A Homeobox protein TGIF1; 99.3 8.5E-13 2.9E-17 101.0 4.4 58 157-214 10-70 (89)
77 1mh3_A Maltose binding-A1 home 99.3 3.4E-13 1.2E-17 125.2 2.1 55 153-207 366-420 (421)
78 2nzz_A Penetratin conjugated G 98.7 4.4E-09 1.5E-13 67.7 1.3 20 194-213 1-20 (37)
79 2ys9_A Homeobox and leucine zi 91.9 0.05 1.7E-06 39.3 1.3 40 164-203 18-57 (70)
80 2rgt_A Fusion of LIM/homeobox 69.2 0.096 3.3E-06 43.0 -6.2 30 150-179 134-163 (169)
81 2glo_A Brinker CG9653-PA; prot 53.6 5.8 0.0002 26.3 1.7 45 156-201 3-47 (59)
82 2elh_A CG11849-PA, LD40883P; s 51.6 10 0.00035 27.2 2.9 45 152-201 16-60 (87)
83 1hlv_A CENP-B, major centromer 49.3 9.8 0.00033 28.8 2.6 47 155-204 4-50 (131)
84 2jpk_A Bacteriocin lactococcin 39.8 7.4 0.00025 23.8 0.4 9 16-24 1-9 (35)
85 3i5g_B Myosin regulatory light 38.4 55 0.0019 25.3 5.5 40 155-194 6-50 (153)
86 2qko_A Possible transcriptiona 36.2 11 0.00037 30.1 1.0 40 164-204 34-73 (215)
87 1tc3_C Protein (TC3 transposas 30.5 25 0.00087 20.9 1.9 40 158-202 5-44 (51)
88 1jko_C HIN recombinase, DNA-in 27.2 21 0.00072 21.7 1.0 40 159-203 6-45 (52)
89 2hxi_A Putative transcriptiona 26.0 20 0.00067 30.1 0.9 49 155-204 25-74 (241)
90 1iuf_A Centromere ABP1 protein 25.7 56 0.0019 25.5 3.5 48 153-203 6-60 (144)
91 3hug_A RNA polymerase sigma fa 23.0 29 0.00099 24.7 1.2 39 159-202 38-76 (92)
92 1p4w_A RCSB; solution structur 22.6 38 0.0013 25.0 1.9 42 156-203 32-73 (99)
93 2jn6_A Protein CGL2762, transp 21.6 51 0.0017 23.5 2.3 42 156-201 3-45 (97)
94 2lhi_A Calmodulin, serine/thre 20.1 58 0.002 25.7 2.6 39 156-194 2-45 (176)
No 1
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=5.9e-21 Score=143.02 Aligned_cols=62 Identities=32% Similarity=0.370 Sum_probs=57.3
Q ss_pred ccCCCCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCCcceeccccccccc
Q psy9181 146 ERRKPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVSMMILFVRR 207 (262)
Q Consensus 146 ~~~~~k~RR~Rt~fT~~Ql~~LE~~F~~~~yps~~~R~~LA~~lgLserqVqVWFQNRRaK~ 207 (262)
+....+.||.||.||.+|+.+||..|+.++||+..+|++||..|+|+++||+|||||||+|.
T Consensus 11 ~~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~ 72 (80)
T 2dmt_A 11 GTKAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKW 72 (80)
T ss_dssp CCCCCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHh
Confidence 34466788999999999999999999999999999999999999999999999999999654
No 2
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.81 E-value=1.5e-20 Score=141.41 Aligned_cols=61 Identities=18% Similarity=0.179 Sum_probs=57.1
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhh----cCCCCHHHHHHHHHHcCCCCCcceeccccccccch
Q psy9181 148 RKPKPRRNRTTFNSHQLNALEKVFER----THYPDAFVREELAKKVCLSEARVQVSMMILFVRRP 208 (262)
Q Consensus 148 ~~~k~RR~Rt~fT~~Ql~~LE~~F~~----~~yps~~~R~~LA~~lgLserqVqVWFQNRRaK~k 208 (262)
...++||.||.||.+|+.+||..|+. ++||+..+|++||..|||+++||||||||||+|.|
T Consensus 13 ~~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~ 77 (80)
T 1wh5_A 13 GGGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGP 77 (80)
T ss_dssp CCCCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSS
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCC
Confidence 34567899999999999999999999 99999999999999999999999999999998863
No 3
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.80 E-value=1.7e-20 Score=141.44 Aligned_cols=62 Identities=26% Similarity=0.301 Sum_probs=57.6
Q ss_pred cCCCCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCCcceeccccccccch
Q psy9181 147 RRKPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVSMMILFVRRP 208 (262)
Q Consensus 147 ~~~~k~RR~Rt~fT~~Ql~~LE~~F~~~~yps~~~R~~LA~~lgLserqVqVWFQNRRaK~k 208 (262)
....+.||.||.||..|+.+||..|..++||+..+|++||..|||+++||+|||||||+|.|
T Consensus 17 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~k 78 (84)
T 2kt0_A 17 KVPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSK 78 (84)
T ss_dssp CCCSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999997764
No 4
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.80 E-value=2.4e-20 Score=140.40 Aligned_cols=61 Identities=16% Similarity=0.187 Sum_probs=56.3
Q ss_pred cCCCCCCCCCCcCCHHHHHHHHHHHhh-----cCCCCHHHHHHHHHHcCCCCCcceeccccccccch
Q psy9181 147 RRKPKPRRNRTTFNSHQLNALEKVFER-----THYPDAFVREELAKKVCLSEARVQVSMMILFVRRP 208 (262)
Q Consensus 147 ~~~~k~RR~Rt~fT~~Ql~~LE~~F~~-----~~yps~~~R~~LA~~lgLserqVqVWFQNRRaK~k 208 (262)
....++||.||.||.+|+.+|| .|.. ++||+..+|++||..|+|+++||||||||||+|.|
T Consensus 12 ~~~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~ 77 (80)
T 1wh7_A 12 SSGGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGP 77 (80)
T ss_dssp CCCCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSC
T ss_pred CCCCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCC
Confidence 3456678999999999999999 8999 99999999999999999999999999999998863
No 5
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.80 E-value=1.2e-20 Score=137.84 Aligned_cols=61 Identities=18% Similarity=0.281 Sum_probs=56.8
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCCcceeccccccccchh
Q psy9181 149 KPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVSMMILFVRRPL 209 (262)
Q Consensus 149 ~~k~RR~Rt~fT~~Ql~~LE~~F~~~~yps~~~R~~LA~~lgLserqVqVWFQNRRaK~kr 209 (262)
..+.||+||.||..|+.+||..|+.++||+..++++||..+||+++||+|||||||+|.||
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk 64 (70)
T 2cra_A 4 GSSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKK 64 (70)
T ss_dssp SCCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcc
Confidence 4567889999999999999999999999999999999999999999999999999977643
No 6
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.79 E-value=3.6e-20 Score=138.74 Aligned_cols=65 Identities=46% Similarity=0.605 Sum_probs=58.4
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCCcceeccccccccchhhhHH
Q psy9181 149 KPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVSMMILFVRRPLALWV 213 (262)
Q Consensus 149 ~~k~RR~Rt~fT~~Ql~~LE~~F~~~~yps~~~R~~LA~~lgLserqVqVWFQNRRaK~kr~Kwr 213 (262)
..+.||.||.||..|+.+||..|..++||+..++++||..|+|+++||+|||||||+|.||.+..
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~ 68 (80)
T 2cue_A 4 GSSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKL 68 (80)
T ss_dssp CCSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhh
Confidence 35678899999999999999999999999999999999999999999999999999776544433
No 7
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=2.6e-20 Score=136.06 Aligned_cols=60 Identities=28% Similarity=0.373 Sum_probs=56.5
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCCcceeccccccccch
Q psy9181 149 KPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVSMMILFVRRP 208 (262)
Q Consensus 149 ~~k~RR~Rt~fT~~Ql~~LE~~F~~~~yps~~~R~~LA~~lgLserqVqVWFQNRRaK~k 208 (262)
..+.||+||.||.+|+.+||..|+.++||+..++++||..+||+++||+|||||||+|.|
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 63 (70)
T 2djn_A 4 GSSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIK 63 (70)
T ss_dssp CCCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhc
Confidence 456788999999999999999999999999999999999999999999999999997764
No 8
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.78 E-value=3e-20 Score=132.53 Aligned_cols=59 Identities=24% Similarity=0.255 Sum_probs=51.1
Q ss_pred CCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCCcceeccccccccchh
Q psy9181 151 KPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVSMMILFVRRPL 209 (262)
Q Consensus 151 k~RR~Rt~fT~~Ql~~LE~~F~~~~yps~~~R~~LA~~lgLserqVqVWFQNRRaK~kr 209 (262)
+++|+||.||..|+.+||..|..++||+..++.+||..+||++++|+|||||||+|.||
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr 60 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKR 60 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGG
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhh
Confidence 46789999999999999999999999999999999999999999999999999987644
No 9
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.78 E-value=1.1e-19 Score=135.87 Aligned_cols=65 Identities=43% Similarity=0.579 Sum_probs=58.6
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCCcceeccccccccchhhhHHHHhcC
Q psy9181 149 KPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVSMMILFVRRPLALWVAEYKN 218 (262)
Q Consensus 149 ~~k~RR~Rt~fT~~Ql~~LE~~F~~~~yps~~~R~~LA~~lgLserqVqVWFQNRRaK~kr~Kwrr~~k~ 218 (262)
..+.||.||.||.+|+.+||..|+.++||+..+|++||..++|++++|+||||||| +|+|++.+.
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR-----~k~rk~~~~ 68 (80)
T 2dms_A 4 GSSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRR-----AKCRQQQQQ 68 (80)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHH-----THHHHTTCS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHh-----HHhhHHHHc
Confidence 45678999999999999999999999999999999999999999999999999999 445555544
No 10
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.78 E-value=3.1e-20 Score=132.09 Aligned_cols=56 Identities=27% Similarity=0.414 Sum_probs=50.6
Q ss_pred CCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCCcceeccccccccc
Q psy9181 152 PRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVSMMILFVRR 207 (262)
Q Consensus 152 ~RR~Rt~fT~~Ql~~LE~~F~~~~yps~~~R~~LA~~lgLserqVqVWFQNRRaK~ 207 (262)
.||+||.||..|+..||..|+.++||+..++++||..+||+++||+|||||||+|.
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~ 58 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKI 58 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccc
Confidence 57899999999999999999999999999999999999999999999999999665
No 11
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.77 E-value=9.2e-20 Score=135.54 Aligned_cols=61 Identities=25% Similarity=0.255 Sum_probs=56.5
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCCcceeccccccccchh
Q psy9181 149 KPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVSMMILFVRRPL 209 (262)
Q Consensus 149 ~~k~RR~Rt~fT~~Ql~~LE~~F~~~~yps~~~R~~LA~~lgLserqVqVWFQNRRaK~kr 209 (262)
.++.+|.||.||..|+.+||..|..++||+..+|++||..+||+++||+|||||||+|.|+
T Consensus 10 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk 70 (77)
T 1puf_A 10 ARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 70 (77)
T ss_dssp CCTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 4567889999999999999999999999999999999999999999999999999966543
No 12
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.2e-19 Score=132.43 Aligned_cols=59 Identities=42% Similarity=0.586 Sum_probs=54.9
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCCcceeccccccccc
Q psy9181 149 KPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVSMMILFVRR 207 (262)
Q Consensus 149 ~~k~RR~Rt~fT~~Ql~~LE~~F~~~~yps~~~R~~LA~~lgLserqVqVWFQNRRaK~ 207 (262)
..+.||.||.||.+|+.+||..|+.++||+..++++||..+||+++||+|||||||+|.
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~ 62 (70)
T 2dmu_A 4 GSSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKW 62 (70)
T ss_dssp TTSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccc
Confidence 34578899999999999999999999999999999999999999999999999999443
No 13
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.77 E-value=9.1e-20 Score=135.97 Aligned_cols=60 Identities=25% Similarity=0.259 Sum_probs=56.0
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCCcceeccccccccc
Q psy9181 148 RKPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVSMMILFVRR 207 (262)
Q Consensus 148 ~~~k~RR~Rt~fT~~Ql~~LE~~F~~~~yps~~~R~~LA~~lgLserqVqVWFQNRRaK~ 207 (262)
...+.||.||.||.+|+.+||..|..++||+..++++||..|||+++||+|||||||+|.
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~ 72 (80)
T 2da3_A 13 EPQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARE 72 (80)
T ss_dssp CCCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhH
Confidence 456778899999999999999999999999999999999999999999999999999554
No 14
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.77 E-value=6.1e-20 Score=129.05 Aligned_cols=56 Identities=29% Similarity=0.425 Sum_probs=53.1
Q ss_pred CCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCCcceeccccccccch
Q psy9181 153 RRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVSMMILFVRRP 208 (262)
Q Consensus 153 RR~Rt~fT~~Ql~~LE~~F~~~~yps~~~R~~LA~~lgLserqVqVWFQNRRaK~k 208 (262)
||+||.||.+|+..||..|..++||+..++.+||..+||+++||+|||||||+|.|
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 56 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAK 56 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhc
Confidence 57899999999999999999999999999999999999999999999999996653
No 15
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=2.7e-19 Score=133.59 Aligned_cols=59 Identities=31% Similarity=0.372 Sum_probs=55.3
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCCcceeccccccccc
Q psy9181 149 KPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVSMMILFVRR 207 (262)
Q Consensus 149 ~~k~RR~Rt~fT~~Ql~~LE~~F~~~~yps~~~R~~LA~~lgLserqVqVWFQNRRaK~ 207 (262)
..+.||.||.||.+|+..||..|+.++||+..++++||..+||+++||+|||||||+|.
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~ 62 (80)
T 2dmq_A 4 GSSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKF 62 (80)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999554
No 16
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.77 E-value=6.2e-20 Score=130.10 Aligned_cols=56 Identities=34% Similarity=0.414 Sum_probs=52.6
Q ss_pred CCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCCcceeccccccccch
Q psy9181 153 RRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVSMMILFVRRP 208 (262)
Q Consensus 153 RR~Rt~fT~~Ql~~LE~~F~~~~yps~~~R~~LA~~lgLserqVqVWFQNRRaK~k 208 (262)
||.||.||..|+..||..|..++||+..++.+||..+||++.||+|||||||+|.|
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 57 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDK 57 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhh
Confidence 57899999999999999999999999999999999999999999999999996653
No 17
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.77 E-value=1.1e-19 Score=132.54 Aligned_cols=60 Identities=23% Similarity=0.282 Sum_probs=56.0
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCCcceeccccccccc
Q psy9181 148 RKPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVSMMILFVRR 207 (262)
Q Consensus 148 ~~~k~RR~Rt~fT~~Ql~~LE~~F~~~~yps~~~R~~LA~~lgLserqVqVWFQNRRaK~ 207 (262)
...+.||.||.||.+|+.+||..|..++||+..++++||..+||+++||+|||||||+|.
T Consensus 3 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~ 62 (70)
T 2da2_A 3 SGSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKA 62 (70)
T ss_dssp CSCCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHH
Confidence 345678899999999999999999999999999999999999999999999999999654
No 18
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.77 E-value=2.6e-19 Score=133.07 Aligned_cols=61 Identities=26% Similarity=0.311 Sum_probs=56.5
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCCcceeccccccccch
Q psy9181 148 RKPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVSMMILFVRRP 208 (262)
Q Consensus 148 ~~~k~RR~Rt~fT~~Ql~~LE~~F~~~~yps~~~R~~LA~~lgLserqVqVWFQNRRaK~k 208 (262)
...++||.||.||..|+..||..|..++||+..+|++||..+||+++||+|||||||+|.|
T Consensus 5 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~k 65 (77)
T 1nk2_P 5 LPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTK 65 (77)
T ss_dssp CSCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchh
Confidence 3456788999999999999999999999999999999999999999999999999996653
No 19
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.76 E-value=9.8e-20 Score=132.75 Aligned_cols=59 Identities=20% Similarity=0.271 Sum_probs=55.3
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCCcceeccccccccc
Q psy9181 149 KPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVSMMILFVRR 207 (262)
Q Consensus 149 ~~k~RR~Rt~fT~~Ql~~LE~~F~~~~yps~~~R~~LA~~lgLserqVqVWFQNRRaK~ 207 (262)
..+.+|+||.||.+|+.+||..|+.++||+..++++||..+||+++||+|||||||+|.
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~ 62 (70)
T 2da1_A 4 GSSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKE 62 (70)
T ss_dssp SCCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHH
Confidence 45678899999999999999999999999999999999999999999999999999553
No 20
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.76 E-value=2.2e-19 Score=130.50 Aligned_cols=56 Identities=36% Similarity=0.449 Sum_probs=53.4
Q ss_pred CCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCCcceeccccccccc
Q psy9181 152 PRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVSMMILFVRR 207 (262)
Q Consensus 152 ~RR~Rt~fT~~Ql~~LE~~F~~~~yps~~~R~~LA~~lgLserqVqVWFQNRRaK~ 207 (262)
+||.||.||..|+..||..|..++||+..++.+||..+||++++|+|||||||+|.
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~ 57 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRH 57 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999554
No 21
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.76 E-value=8.8e-20 Score=131.66 Aligned_cols=58 Identities=28% Similarity=0.374 Sum_probs=54.9
Q ss_pred CCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCCcceeccccccccch
Q psy9181 151 KPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVSMMILFVRRP 208 (262)
Q Consensus 151 k~RR~Rt~fT~~Ql~~LE~~F~~~~yps~~~R~~LA~~lgLserqVqVWFQNRRaK~k 208 (262)
+++|.||.||.+|+..||..|+.++||+..++++||..+||+++||+|||||||+|.|
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 59 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDK 59 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHh
Confidence 4688999999999999999999999999999999999999999999999999997653
No 22
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.76 E-value=1.6e-19 Score=129.25 Aligned_cols=57 Identities=28% Similarity=0.304 Sum_probs=51.9
Q ss_pred CCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCCcceeccccccccc
Q psy9181 151 KPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVSMMILFVRR 207 (262)
Q Consensus 151 k~RR~Rt~fT~~Ql~~LE~~F~~~~yps~~~R~~LA~~lgLserqVqVWFQNRRaK~ 207 (262)
+.||.||.||..|+.+||..|..++||+..++.+||..+||+++||+|||||||+|.
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~ 58 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKW 58 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhh
Confidence 367899999999999999999999999999999999999999999999999999443
No 23
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.76 E-value=4.4e-19 Score=129.47 Aligned_cols=59 Identities=27% Similarity=0.281 Sum_probs=54.5
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCCcceeccccccccc
Q psy9181 149 KPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVSMMILFVRR 207 (262)
Q Consensus 149 ~~k~RR~Rt~fT~~Ql~~LE~~F~~~~yps~~~R~~LA~~lgLserqVqVWFQNRRaK~ 207 (262)
..+.++.|+.||.+|+.+||..|..++||+..++++||..+||+++||+|||||||+|.
T Consensus 4 ~~~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~ 62 (70)
T 2e1o_A 4 GSSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKW 62 (70)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhc
Confidence 34567889999999999999999999999999999999999999999999999999443
No 24
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.75 E-value=3.9e-19 Score=129.17 Aligned_cols=63 Identities=25% Similarity=0.312 Sum_probs=57.3
Q ss_pred CCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCCcceeccccccccchhhhHHHHhcCC
Q psy9181 152 PRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVSMMILFVRRPLALWVAEYKNP 219 (262)
Q Consensus 152 ~RR~Rt~fT~~Ql~~LE~~F~~~~yps~~~R~~LA~~lgLserqVqVWFQNRRaK~kr~Kwrr~~k~~ 219 (262)
+||.||.||..|+..||..|..++||+..++.+||..+||++++|+||||||| +|+++..+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR-----~k~kr~~~~~ 64 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHR-----YKMKRQAKDK 64 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHH-----HHHHHTTSCC
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHh-----hhhhhhhhHh
Confidence 57889999999999999999999999999999999999999999999999999 5556655543
No 25
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.75 E-value=3.5e-19 Score=133.54 Aligned_cols=60 Identities=52% Similarity=0.736 Sum_probs=54.5
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCCcceeccccccccc
Q psy9181 148 RKPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVSMMILFVRR 207 (262)
Q Consensus 148 ~~~k~RR~Rt~fT~~Ql~~LE~~F~~~~yps~~~R~~LA~~lgLserqVqVWFQNRRaK~ 207 (262)
..+++||.||.||..|+..||..|..++||+..+|.+||..+||+++||+|||||||+|.
T Consensus 14 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~ 73 (81)
T 1fjl_A 14 LKRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARL 73 (81)
T ss_dssp ---CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhh
Confidence 356778899999999999999999999999999999999999999999999999999554
No 26
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.75 E-value=2.9e-19 Score=129.98 Aligned_cols=62 Identities=27% Similarity=0.348 Sum_probs=56.8
Q ss_pred CCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCCcceeccccccccchhhhHHHHhcC
Q psy9181 152 PRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVSMMILFVRRPLALWVAEYKN 218 (262)
Q Consensus 152 ~RR~Rt~fT~~Ql~~LE~~F~~~~yps~~~R~~LA~~lgLserqVqVWFQNRRaK~kr~Kwrr~~k~ 218 (262)
+||.||.||..|+..||..|..++||+..++.+||..+||+++||+||||||| +|+++..+.
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR-----~k~kk~~~~ 63 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRR-----MKWKKENKT 63 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHH-----HHHHHHSCC
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHH-----hHHhHhccc
Confidence 57889999999999999999999999999999999999999999999999999 556665544
No 27
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.75 E-value=4.4e-19 Score=130.70 Aligned_cols=59 Identities=20% Similarity=0.287 Sum_probs=55.2
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCCcceeccccccccc
Q psy9181 149 KPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVSMMILFVRR 207 (262)
Q Consensus 149 ~~k~RR~Rt~fT~~Ql~~LE~~F~~~~yps~~~R~~LA~~lgLserqVqVWFQNRRaK~ 207 (262)
..+.||.|+.||..|+..||..|..++||+..+|.+||..+||+++||+|||||||+|.
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~ 62 (73)
T 2l7z_A 4 MLEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKE 62 (73)
T ss_dssp SSCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHH
Confidence 34578899999999999999999999999999999999999999999999999999554
No 28
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.75 E-value=2.4e-19 Score=125.54 Aligned_cols=56 Identities=25% Similarity=0.358 Sum_probs=53.3
Q ss_pred CCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCCcceeccccccccc
Q psy9181 152 PRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVSMMILFVRR 207 (262)
Q Consensus 152 ~RR~Rt~fT~~Ql~~LE~~F~~~~yps~~~R~~LA~~lgLserqVqVWFQNRRaK~ 207 (262)
+||.|+.||..|+..||..|..++||+..++++||..+||++.||+|||||||+|.
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~ 57 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKS 57 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccC
Confidence 56789999999999999999999999999999999999999999999999999664
No 29
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.75 E-value=1.8e-19 Score=127.93 Aligned_cols=59 Identities=25% Similarity=0.351 Sum_probs=47.6
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCCcceeccccccccc
Q psy9181 149 KPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVSMMILFVRR 207 (262)
Q Consensus 149 ~~k~RR~Rt~fT~~Ql~~LE~~F~~~~yps~~~R~~LA~~lgLserqVqVWFQNRRaK~ 207 (262)
..+.+|.|+.||..|+..||..|..++||+..++.+||..+||++.||+|||||||+|.
T Consensus 2 k~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~ 60 (61)
T 1akh_A 2 KEKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRS 60 (61)
T ss_dssp ----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhcc
Confidence 35678899999999999999999999999999999999999999999999999999664
No 30
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.75 E-value=4.1e-19 Score=130.72 Aligned_cols=65 Identities=54% Similarity=0.720 Sum_probs=58.2
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCCcceeccccccccchhhhHHHHhcC
Q psy9181 149 KPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVSMMILFVRRPLALWVAEYKN 218 (262)
Q Consensus 149 ~~k~RR~Rt~fT~~Ql~~LE~~F~~~~yps~~~R~~LA~~lgLserqVqVWFQNRRaK~kr~Kwrr~~k~ 218 (262)
.++++|.||.||..|+..||..|..++||+..++++||..+||++.+|+||||||| +|+++.++.
T Consensus 6 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR-----~k~kk~~r~ 70 (75)
T 2m0c_A 6 KGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRR-----AKWRKRERF 70 (75)
T ss_dssp CSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHH-----HHHTCCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHH-----HHHHHHHhh
Confidence 45678899999999999999999999999999999999999999999999999999 445554444
No 31
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.75 E-value=2.2e-19 Score=130.34 Aligned_cols=63 Identities=43% Similarity=0.554 Sum_probs=57.8
Q ss_pred CCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCCcceeccccccccchhhhHHHHhcC
Q psy9181 151 KPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVSMMILFVRRPLALWVAEYKN 218 (262)
Q Consensus 151 k~RR~Rt~fT~~Ql~~LE~~F~~~~yps~~~R~~LA~~lgLserqVqVWFQNRRaK~kr~Kwrr~~k~ 218 (262)
++||.||.||..|+..||..|..++||+..++.+||..+||+++||+||||||| +|+++..+.
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR-----~k~rk~~~~ 64 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRR-----AKWRKREEF 64 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHH-----HHHHHHTTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHh-----HHHHHHhhc
Confidence 568899999999999999999999999999999999999999999999999999 556665554
No 32
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.74 E-value=1e-18 Score=134.69 Aligned_cols=60 Identities=27% Similarity=0.395 Sum_probs=55.8
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCCcceeccccccccc
Q psy9181 148 RKPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVSMMILFVRR 207 (262)
Q Consensus 148 ~~~k~RR~Rt~fT~~Ql~~LE~~F~~~~yps~~~R~~LA~~lgLserqVqVWFQNRRaK~ 207 (262)
...++||.||.||..|+.+||..|..++||+..+|.+||..+||+++||+|||||||+|.
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~ 72 (93)
T 3a01_A 13 TPPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKW 72 (93)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhh
Confidence 345678899999999999999999999999999999999999999999999999999554
No 33
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.74 E-value=2.8e-19 Score=138.38 Aligned_cols=63 Identities=19% Similarity=0.140 Sum_probs=54.3
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCCcceeccccccccchhh
Q psy9181 148 RKPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVSMMILFVRRPLA 210 (262)
Q Consensus 148 ~~~k~RR~Rt~fT~~Ql~~LE~~F~~~~yps~~~R~~LA~~lgLserqVqVWFQNRRaK~kr~ 210 (262)
.....+|+|+.||..|+.+||..|+.++||+..+|++||..|||+++||+|||||||+|.||.
T Consensus 21 ~~~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~ 83 (96)
T 3nar_A 21 PKSGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNG 83 (96)
T ss_dssp ------CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhh
Confidence 345567889999999999999999999999999999999999999999999999999876643
No 34
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.74 E-value=5.3e-19 Score=134.62 Aligned_cols=59 Identities=24% Similarity=0.313 Sum_probs=51.2
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCCcceeccccccccc
Q psy9181 149 KPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVSMMILFVRR 207 (262)
Q Consensus 149 ~~k~RR~Rt~fT~~Ql~~LE~~F~~~~yps~~~R~~LA~~lgLserqVqVWFQNRRaK~ 207 (262)
..+.||.||.||..|+.+||..|+.++||+..+|++||..+||+++||+|||||||+|.
T Consensus 25 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~ 83 (88)
T 2r5y_A 25 NGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKW 83 (88)
T ss_dssp ------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHh
Confidence 34578899999999999999999999999999999999999999999999999999554
No 35
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=7.8e-19 Score=131.32 Aligned_cols=59 Identities=15% Similarity=0.091 Sum_probs=55.2
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHHhhc----CCCCHHHHHHHHHHcCCCCCcceeccccccccc
Q psy9181 149 KPKPRRNRTTFNSHQLNALEKVFERT----HYPDAFVREELAKKVCLSEARVQVSMMILFVRR 207 (262)
Q Consensus 149 ~~k~RR~Rt~fT~~Ql~~LE~~F~~~----~yps~~~R~~LA~~lgLserqVqVWFQNRRaK~ 207 (262)
..+.||.||.||.+|+.+||..|+.+ +||+..+|++||..+||+++||+|||||||+|.
T Consensus 5 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~ 67 (80)
T 2da4_A 5 SSGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKY 67 (80)
T ss_dssp CCCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHH
Confidence 45678899999999999999999999 999999999999999999999999999999443
No 36
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.73 E-value=1.9e-18 Score=126.71 Aligned_cols=62 Identities=23% Similarity=0.261 Sum_probs=55.8
Q ss_pred CCCCCcCCHHHHHHHHHHHhh-cCCCCHHHHHHHHHHcCCCCCcceeccccccccchhhhHHHHhcCC
Q psy9181 153 RRNRTTFNSHQLNALEKVFER-THYPDAFVREELAKKVCLSEARVQVSMMILFVRRPLALWVAEYKNP 219 (262)
Q Consensus 153 RR~Rt~fT~~Ql~~LE~~F~~-~~yps~~~R~~LA~~lgLserqVqVWFQNRRaK~kr~Kwrr~~k~~ 219 (262)
.++|+.||..|+.+||..|.. ++||+..+|++||..+||+++||+||||||| +|+|+..+..
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR-----~k~rk~~~~~ 64 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRL-----AEWRRSEGLP 64 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHH-----HHHHHHHCCC
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHH-----HHHhhhccCC
Confidence 467899999999999999996 9999999999999999999999999999999 5566665543
No 37
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.73 E-value=6.5e-19 Score=132.31 Aligned_cols=59 Identities=27% Similarity=0.334 Sum_probs=50.4
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCCcceeccccccccc
Q psy9181 149 KPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVSMMILFVRR 207 (262)
Q Consensus 149 ~~k~RR~Rt~fT~~Ql~~LE~~F~~~~yps~~~R~~LA~~lgLserqVqVWFQNRRaK~ 207 (262)
..+.||.||.||..|+.+||..|..++||+..+|++||..+||+++||+|||||||+|.
T Consensus 17 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~ 75 (81)
T 1b8i_A 17 NGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKL 75 (81)
T ss_dssp -------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhh
Confidence 34568899999999999999999999999999999999999999999999999999554
No 38
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.73 E-value=2.3e-18 Score=126.69 Aligned_cols=62 Identities=19% Similarity=0.176 Sum_probs=55.8
Q ss_pred CCCCCCcCCHHHHHHHHHHHhh-cCCCCHHHHHHHHHHcCCCCCcceeccccccccchhhhHHHHhcC
Q psy9181 152 PRRNRTTFNSHQLNALEKVFER-THYPDAFVREELAKKVCLSEARVQVSMMILFVRRPLALWVAEYKN 218 (262)
Q Consensus 152 ~RR~Rt~fT~~Ql~~LE~~F~~-~~yps~~~R~~LA~~lgLserqVqVWFQNRRaK~kr~Kwrr~~k~ 218 (262)
.+++||.||.+|+.+||..|+. ++||+..+|.+||..+||+++||+||||||| +|+|+..+.
T Consensus 2 ~~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR-----~k~rk~~~~ 64 (73)
T 2hi3_A 2 SAQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRL-----AEWRRSEGL 64 (73)
T ss_dssp CCSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHH-----HHHHHHHTC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHH-----HHHHHhccC
Confidence 3567899999999999999995 9999999999999999999999999999999 555666554
No 39
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.72 E-value=1.2e-18 Score=125.97 Aligned_cols=56 Identities=34% Similarity=0.473 Sum_probs=53.0
Q ss_pred CCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCCcceeccccccccc
Q psy9181 152 PRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVSMMILFVRR 207 (262)
Q Consensus 152 ~RR~Rt~fT~~Ql~~LE~~F~~~~yps~~~R~~LA~~lgLserqVqVWFQNRRaK~ 207 (262)
.||+||.||..|+..||..|..++||+..++++||..+||+++||+|||||||+|.
T Consensus 1 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~ 56 (67)
T 2k40_A 1 GRRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKL 56 (67)
T ss_dssp CCCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CcCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHH
Confidence 37889999999999999999999999999999999999999999999999999553
No 40
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=3.3e-18 Score=126.70 Aligned_cols=54 Identities=15% Similarity=0.099 Sum_probs=50.5
Q ss_pred CCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCCcceeccccccccc
Q psy9181 154 RNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVSMMILFVRR 207 (262)
Q Consensus 154 R~Rt~fT~~Ql~~LE~~F~~~~yps~~~R~~LA~~lgLserqVqVWFQNRRaK~ 207 (262)
++|+.||.+|+.+||..|..++||+..+|.+||..+||+++||+|||||||+|.
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~ 62 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKV 62 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHH
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHH
Confidence 456779999999999999999999999999999999999999999999999554
No 41
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.72 E-value=3e-18 Score=127.81 Aligned_cols=60 Identities=10% Similarity=-0.024 Sum_probs=53.4
Q ss_pred CCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCCcceeccccccccchhhhHHHHhcC
Q psy9181 154 RNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVSMMILFVRRPLALWVAEYKN 218 (262)
Q Consensus 154 R~Rt~fT~~Ql~~LE~~F~~~~yps~~~R~~LA~~lgLserqVqVWFQNRRaK~kr~Kwrr~~k~ 218 (262)
.+|+.||.+|+.+||..|..++||+..+|++||..+||+++||+||||||| +|||+....
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR-----~k~Kk~~l~ 64 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTR-----YALKHGQLK 64 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHH-----HHHHHTCCS
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhH-----HHHHHHHHH
Confidence 356679999999999999999999999999999999999999999999999 555655443
No 42
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.72 E-value=3.4e-18 Score=131.92 Aligned_cols=66 Identities=21% Similarity=0.212 Sum_probs=59.0
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcC---------------CCCCcceeccccccccchhhhH
Q psy9181 148 RKPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVC---------------LSEARVQVSMMILFVRRPLALW 212 (262)
Q Consensus 148 ~~~k~RR~Rt~fT~~Ql~~LE~~F~~~~yps~~~R~~LA~~lg---------------LserqVqVWFQNRRaK~kr~Kw 212 (262)
...++||.|+.||..|+.+||..|+.++||+..+|++||..++ |++.+|+|||||||+ |+
T Consensus 3 ~~~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~-----k~ 77 (95)
T 2cuf_A 3 SGSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRK-----EI 77 (95)
T ss_dssp SSSCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHH-----HH
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHH-----HH
Confidence 3456789999999999999999999999999999999999999 999999999999994 45
Q ss_pred HHHhcC
Q psy9181 213 VAEYKN 218 (262)
Q Consensus 213 rr~~k~ 218 (262)
+++.+.
T Consensus 78 kr~~~~ 83 (95)
T 2cuf_A 78 KRRANI 83 (95)
T ss_dssp HHHHHC
T ss_pred HHHhhc
Confidence 555544
No 43
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.71 E-value=1.1e-18 Score=123.53 Aligned_cols=53 Identities=53% Similarity=0.730 Sum_probs=48.4
Q ss_pred CCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCCcceeccccccccc
Q psy9181 155 NRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVSMMILFVRR 207 (262)
Q Consensus 155 ~Rt~fT~~Ql~~LE~~F~~~~yps~~~R~~LA~~lgLserqVqVWFQNRRaK~ 207 (262)
+||.||.+|+..||..|..++||+..++.+||..+||+++||+|||||||+|.
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~ 54 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKW 54 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhh
Confidence 58999999999999999999999999999999999999999999999999554
No 44
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.71 E-value=2.3e-18 Score=133.39 Aligned_cols=58 Identities=29% Similarity=0.376 Sum_probs=51.1
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCCcceeccccccccc
Q psy9181 150 PKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVSMMILFVRR 207 (262)
Q Consensus 150 ~k~RR~Rt~fT~~Ql~~LE~~F~~~~yps~~~R~~LA~~lgLserqVqVWFQNRRaK~ 207 (262)
.+.+|+||.||..|+.+||..|..++||+..+|++||..|||+++||+|||||||+|.
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~ 89 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQ 89 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHH
Confidence 4678899999999999999999999999999999999999999999999999999553
No 45
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.71 E-value=2.6e-18 Score=125.07 Aligned_cols=59 Identities=17% Similarity=0.170 Sum_probs=55.3
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhh-cCCCCHHHHHHHHHHcCCCCCcceecccccccc
Q psy9181 148 RKPKPRRNRTTFNSHQLNALEKVFER-THYPDAFVREELAKKVCLSEARVQVSMMILFVR 206 (262)
Q Consensus 148 ~~~k~RR~Rt~fT~~Ql~~LE~~F~~-~~yps~~~R~~LA~~lgLserqVqVWFQNRRaK 206 (262)
..++++|.||.|+.+||..|+..|+. ++||+...|+.||.++||++++|||||||||.-
T Consensus 3 ~~~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~ 62 (71)
T 1wi3_A 3 SGSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYH 62 (71)
T ss_dssp CCCCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceee
Confidence 34568899999999999999999999 999999999999999999999999999999943
No 46
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.71 E-value=2.3e-18 Score=123.36 Aligned_cols=59 Identities=22% Similarity=0.222 Sum_probs=55.1
Q ss_pred CCCCCCCcCCHHHHHHHHHHH---hhcCCCCHHHHHHHHHHcCCCCCcceeccccccccchh
Q psy9181 151 KPRRNRTTFNSHQLNALEKVF---ERTHYPDAFVREELAKKVCLSEARVQVSMMILFVRRPL 209 (262)
Q Consensus 151 k~RR~Rt~fT~~Ql~~LE~~F---~~~~yps~~~R~~LA~~lgLserqVqVWFQNRRaK~kr 209 (262)
..++.|+.|+..|+.+||..| ..++||+..++++||..+||++.||++||||||+|.||
T Consensus 2 ~~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 2 SGHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 357889999999999999999 89999999999999999999999999999999988643
No 47
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.71 E-value=3.4e-18 Score=125.80 Aligned_cols=57 Identities=14% Similarity=0.109 Sum_probs=53.8
Q ss_pred CCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCCcceeccccccccc
Q psy9181 151 KPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVSMMILFVRR 207 (262)
Q Consensus 151 k~RR~Rt~fT~~Ql~~LE~~F~~~~yps~~~R~~LA~~lgLserqVqVWFQNRRaK~ 207 (262)
..++.||.||.+|+.+||..|+.++||+..++++||..+||+++||+|||||||+|.
T Consensus 5 ~~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~ 61 (74)
T 2ly9_A 5 DSFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQ 61 (74)
T ss_dssp CCCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHH
Confidence 457789999999999999999999999999999999999999999999999999664
No 48
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.71 E-value=1.6e-18 Score=143.91 Aligned_cols=63 Identities=22% Similarity=0.230 Sum_probs=54.3
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCCcceeccccccccchhh
Q psy9181 148 RKPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVSMMILFVRRPLA 210 (262)
Q Consensus 148 ~~~k~RR~Rt~fT~~Ql~~LE~~F~~~~yps~~~R~~LA~~lgLserqVqVWFQNRRaK~kr~ 210 (262)
...++||+||.||..|+..||..|..++||+..+|.+||..+||+++||+|||||||+|.||.
T Consensus 83 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 83 ANERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp ------CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 456678899999999999999999999999999999999999999999999999999776544
No 49
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=2.4e-18 Score=127.56 Aligned_cols=56 Identities=23% Similarity=0.175 Sum_probs=52.4
Q ss_pred CCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCCcceeccccccccc
Q psy9181 152 PRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVSMMILFVRR 207 (262)
Q Consensus 152 ~RR~Rt~fT~~Ql~~LE~~F~~~~yps~~~R~~LA~~lgLserqVqVWFQNRRaK~ 207 (262)
+.+.|+.||.+|+.+||..|..++||+..+|++||..+||+++||+|||||||+|.
T Consensus 8 ~~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~ 63 (76)
T 2dn0_A 8 ASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHC 63 (76)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHS
T ss_pred CCCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHH
Confidence 34568999999999999999999999999999999999999999999999999665
No 50
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.70 E-value=2.3e-18 Score=144.80 Aligned_cols=60 Identities=18% Similarity=0.206 Sum_probs=52.6
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCCcceeccccccccchh
Q psy9181 150 PKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVSMMILFVRRPL 209 (262)
Q Consensus 150 ~k~RR~Rt~fT~~Ql~~LE~~F~~~~yps~~~R~~LA~~lgLserqVqVWFQNRRaK~kr 209 (262)
.++||+||.||..|+..||..|..++||+..+|++||..+||+++||+|||||||+|.||
T Consensus 99 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr 158 (160)
T 1e3o_C 99 SRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKR 158 (160)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTS
T ss_pred CCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhc
Confidence 467889999999999999999999999999999999999999999999999999976543
No 51
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.69 E-value=5e-18 Score=118.79 Aligned_cols=51 Identities=27% Similarity=0.344 Sum_probs=47.4
Q ss_pred CcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCCcceeccccccccc
Q psy9181 157 TTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVSMMILFVRR 207 (262)
Q Consensus 157 t~fT~~Ql~~LE~~F~~~~yps~~~R~~LA~~lgLserqVqVWFQNRRaK~ 207 (262)
|.||..|+..||..|..++||+..+|.+||..+||+++||+|||||||+|.
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~ 52 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKW 52 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhh
Confidence 679999999999999999999999999999999999999999999999554
No 52
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.69 E-value=1.1e-17 Score=122.91 Aligned_cols=59 Identities=15% Similarity=0.180 Sum_probs=54.5
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHcCCCCCcceeccccccccc
Q psy9181 149 KPKPRRNRTTFNSHQLNALEKVFER---THYPDAFVREELAKKVCLSEARVQVSMMILFVRR 207 (262)
Q Consensus 149 ~~k~RR~Rt~fT~~Ql~~LE~~F~~---~~yps~~~R~~LA~~lgLserqVqVWFQNRRaK~ 207 (262)
..+.++.|+.|+..|+.+||..|.. ++||+..+|++||..+||+++||+|||||||+|.
T Consensus 4 ~~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~ 65 (73)
T 1x2n_A 4 GSSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRI 65 (73)
T ss_dssp CSSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhc
Confidence 4567889999999999999999987 9999999999999999999999999999999543
No 53
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.69 E-value=2.5e-18 Score=145.40 Aligned_cols=63 Identities=22% Similarity=0.195 Sum_probs=48.5
Q ss_pred cCCCCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCCcceeccccccccchh
Q psy9181 147 RRKPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVSMMILFVRRPL 209 (262)
Q Consensus 147 ~~~~k~RR~Rt~fT~~Ql~~LE~~F~~~~yps~~~R~~LA~~lgLserqVqVWFQNRRaK~kr 209 (262)
....++||+||.||..|+.+||..|..++||+..+|++||..+||+++||+|||||||+|.||
T Consensus 94 ~~~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr 156 (164)
T 2xsd_C 94 AAQGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKR 156 (164)
T ss_dssp ------------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTB
T ss_pred cccccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhh
Confidence 345677889999999999999999999999999999999999999999999999999966543
No 54
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=6.7e-18 Score=129.12 Aligned_cols=50 Identities=18% Similarity=0.162 Sum_probs=47.5
Q ss_pred cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCCcceeccccccccc
Q psy9181 158 TFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVSMMILFVRR 207 (262)
Q Consensus 158 ~fT~~Ql~~LE~~F~~~~yps~~~R~~LA~~lgLserqVqVWFQNRRaK~ 207 (262)
.||.+|+.+||..|..++||+..+|++||..+||+++||+|||||||+|.
T Consensus 19 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~ 68 (89)
T 2dmp_A 19 EKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLR 68 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHH
Confidence 48999999999999999999999999999999999999999999999543
No 55
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.68 E-value=2.9e-18 Score=126.35 Aligned_cols=56 Identities=23% Similarity=0.221 Sum_probs=51.2
Q ss_pred CCCCCCcCCHHHHHHHHHHH-hhcCCCCHHHHHHHHHHcCCCCCcceeccccccccc
Q psy9181 152 PRRNRTTFNSHQLNALEKVF-ERTHYPDAFVREELAKKVCLSEARVQVSMMILFVRR 207 (262)
Q Consensus 152 ~RR~Rt~fT~~Ql~~LE~~F-~~~~yps~~~R~~LA~~lgLserqVqVWFQNRRaK~ 207 (262)
..+.|++++.+|+.+||..| ..++||+..+|++||..+||+++||+|||||||+|.
T Consensus 8 g~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~ 64 (72)
T 2cqx_A 8 GIKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQD 64 (72)
T ss_dssp CCCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCC
Confidence 34566778999999999999 999999999999999999999999999999999654
No 56
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.68 E-value=2.3e-17 Score=126.48 Aligned_cols=56 Identities=11% Similarity=0.002 Sum_probs=51.1
Q ss_pred cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCCcceeccccccccchhhhHHHHhcC
Q psy9181 158 TFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVSMMILFVRRPLALWVAEYKN 218 (262)
Q Consensus 158 ~fT~~Ql~~LE~~F~~~~yps~~~R~~LA~~lgLserqVqVWFQNRRaK~kr~Kwrr~~k~ 218 (262)
.||.+|+.+||..|..++||+..+|++||..|||+++||+||||||| +||++.++.
T Consensus 17 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR-----~k~rk~~~~ 72 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKK-----KSKALKEEK 72 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHH-----HHHHSCCSC
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccc-----hHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999 556654443
No 57
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.68 E-value=5.6e-18 Score=132.30 Aligned_cols=60 Identities=25% Similarity=0.278 Sum_probs=51.0
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHH------------------cC---CCCCcceeccccccccc
Q psy9181 149 KPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKK------------------VC---LSEARVQVSMMILFVRR 207 (262)
Q Consensus 149 ~~k~RR~Rt~fT~~Ql~~LE~~F~~~~yps~~~R~~LA~~------------------lg---LserqVqVWFQNRRaK~ 207 (262)
.++.||.|+.||..|+.+||..|+.++||+..+|++||.. || |++.+|+|||||||+|.
T Consensus 6 ~~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~ 85 (99)
T 1lfb_A 6 TKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE 85 (99)
T ss_dssp -------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHH
Confidence 4567899999999999999999999999999999999999 88 99999999999999876
Q ss_pred h
Q psy9181 208 P 208 (262)
Q Consensus 208 k 208 (262)
|
T Consensus 86 k 86 (99)
T 1lfb_A 86 A 86 (99)
T ss_dssp S
T ss_pred H
Confidence 3
No 58
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.67 E-value=8.8e-18 Score=118.83 Aligned_cols=53 Identities=21% Similarity=0.231 Sum_probs=50.3
Q ss_pred CCCcCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHcCCCCCcceeccccccccc
Q psy9181 155 NRTTFNSHQLNALEKVFER---THYPDAFVREELAKKVCLSEARVQVSMMILFVRR 207 (262)
Q Consensus 155 ~Rt~fT~~Ql~~LE~~F~~---~~yps~~~R~~LA~~lgLserqVqVWFQNRRaK~ 207 (262)
+|+.||.+|+.+||..|.. ++||+..++++||..+||+++||++||||||+|.
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~ 56 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKE 56 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHccc
Confidence 3688999999999999999 9999999999999999999999999999999664
No 59
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.67 E-value=1.9e-17 Score=121.58 Aligned_cols=56 Identities=30% Similarity=0.397 Sum_probs=52.7
Q ss_pred CCCCCCcCCHHHHHHHHHHH---hhcCCCCHHHHHHHHHHcCCCCCcceeccccccccc
Q psy9181 152 PRRNRTTFNSHQLNALEKVF---ERTHYPDAFVREELAKKVCLSEARVQVSMMILFVRR 207 (262)
Q Consensus 152 ~RR~Rt~fT~~Ql~~LE~~F---~~~~yps~~~R~~LA~~lgLserqVqVWFQNRRaK~ 207 (262)
.||+|+.||..|+..||..| ..++||+..++.+||..+||++.||+|||||||+|.
T Consensus 1 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~ 59 (73)
T 1puf_B 1 ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRY 59 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhc
Confidence 36889999999999999999 899999999999999999999999999999999553
No 60
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.67 E-value=1.2e-17 Score=138.97 Aligned_cols=62 Identities=24% Similarity=0.286 Sum_probs=57.3
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCCcceeccccccccchh
Q psy9181 148 RKPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVSMMILFVRRPL 209 (262)
Q Consensus 148 ~~~k~RR~Rt~fT~~Ql~~LE~~F~~~~yps~~~R~~LA~~lgLserqVqVWFQNRRaK~kr 209 (262)
...++||+||.||..|+..||..|..++||+..+|.+||..+||+++||+|||||||+|.||
T Consensus 89 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 89 EPSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp SCCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 34677889999999999999999999999999999999999999999999999999976543
No 61
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.67 E-value=4.9e-17 Score=122.72 Aligned_cols=59 Identities=14% Similarity=0.184 Sum_probs=54.3
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHcCCCCCcceeccccccccc
Q psy9181 149 KPKPRRNRTTFNSHQLNALEKVFER---THYPDAFVREELAKKVCLSEARVQVSMMILFVRR 207 (262)
Q Consensus 149 ~~k~RR~Rt~fT~~Ql~~LE~~F~~---~~yps~~~R~~LA~~lgLserqVqVWFQNRRaK~ 207 (262)
..+++++|+.|+.+|+.+||..|.. ++||+..+|++||..+||+++||+|||||||+|.
T Consensus 4 ~~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~ 65 (83)
T 2dmn_A 4 GSSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRI 65 (83)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhh
Confidence 4567888999999999999999987 5999999999999999999999999999999654
No 62
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=2.3e-17 Score=129.34 Aligned_cols=59 Identities=20% Similarity=0.232 Sum_probs=55.4
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHc---------------------CCCCCcceeccccccccc
Q psy9181 149 KPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKV---------------------CLSEARVQVSMMILFVRR 207 (262)
Q Consensus 149 ~~k~RR~Rt~fT~~Ql~~LE~~F~~~~yps~~~R~~LA~~l---------------------gLserqVqVWFQNRRaK~ 207 (262)
.++.||.||.|++.|+.+||+.|+.++||+..+|++||..+ .|++.+|+|||||||+|.
T Consensus 3 ~~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~ 82 (102)
T 2da6_A 3 SGSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 82 (102)
T ss_dssp TCCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHH
Confidence 45678999999999999999999999999999999999999 799999999999999665
No 63
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=1.6e-17 Score=119.80 Aligned_cols=52 Identities=15% Similarity=0.050 Sum_probs=48.8
Q ss_pred CcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCCcceeccccccccch
Q psy9181 157 TTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVSMMILFVRRP 208 (262)
Q Consensus 157 t~fT~~Ql~~LE~~F~~~~yps~~~R~~LA~~lgLserqVqVWFQNRRaK~k 208 (262)
..++.+|+..||..|..++||+..+|++||..+||+++||+|||||||+|++
T Consensus 8 ~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~ 59 (64)
T 2e19_A 8 QPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQI 59 (64)
T ss_dssp CCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCS
T ss_pred CCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCC
Confidence 4457999999999999999999999999999999999999999999998863
No 64
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.65 E-value=2.3e-17 Score=125.27 Aligned_cols=57 Identities=19% Similarity=0.196 Sum_probs=53.3
Q ss_pred CCCCCCCcCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHcCCCCCcceeccccccccc
Q psy9181 151 KPRRNRTTFNSHQLNALEKVFER---THYPDAFVREELAKKVCLSEARVQVSMMILFVRR 207 (262)
Q Consensus 151 k~RR~Rt~fT~~Ql~~LE~~F~~---~~yps~~~R~~LA~~lgLserqVqVWFQNRRaK~ 207 (262)
+++++|+.|+.+|+.+||..|.. ++||+..+|++||..+||+++||++||||||+|.
T Consensus 26 ~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~ 85 (87)
T 1mnm_C 26 TKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKE 85 (87)
T ss_dssp SSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhc
Confidence 45667999999999999999999 9999999999999999999999999999999664
No 65
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.65 E-value=2e-17 Score=124.72 Aligned_cols=56 Identities=20% Similarity=0.227 Sum_probs=50.5
Q ss_pred CCCCCcCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHcCCCCCcceeccccccccch
Q psy9181 153 RRNRTTFNSHQLNALEKVFER---THYPDAFVREELAKKVCLSEARVQVSMMILFVRRP 208 (262)
Q Consensus 153 RR~Rt~fT~~Ql~~LE~~F~~---~~yps~~~R~~LA~~lgLserqVqVWFQNRRaK~k 208 (262)
++.|++||..|+..||..|.. ++||+..+|.+||..+||+++||+|||||||+|.|
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~k 61 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEK 61 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHcccc
Confidence 345667999999999999999 99999999999999999999999999999996653
No 66
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.65 E-value=3.7e-17 Score=123.80 Aligned_cols=56 Identities=30% Similarity=0.392 Sum_probs=52.3
Q ss_pred CCCCCcCCHHHHHHHHHHH---hhcCCCCHHHHHHHHHHcCCCCCcceeccccccccch
Q psy9181 153 RRNRTTFNSHQLNALEKVF---ERTHYPDAFVREELAKKVCLSEARVQVSMMILFVRRP 208 (262)
Q Consensus 153 RR~Rt~fT~~Ql~~LE~~F---~~~~yps~~~R~~LA~~lgLserqVqVWFQNRRaK~k 208 (262)
||+|+.|+..|+.+||..| ..++||+..+|++||..+||++.||+|||||||+|.|
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~k 60 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYK 60 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhh
Confidence 6889999999999999999 8999999999999999999999999999999996653
No 67
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.65 E-value=2e-17 Score=121.09 Aligned_cols=52 Identities=25% Similarity=0.310 Sum_probs=48.9
Q ss_pred CcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCCcceeccccccccch
Q psy9181 157 TTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVSMMILFVRRP 208 (262)
Q Consensus 157 t~fT~~Ql~~LE~~F~~~~yps~~~R~~LA~~lgLserqVqVWFQNRRaK~k 208 (262)
..+|..|+.+||..|..++||+..+|.+||..+||+++||+|||||||+|.|
T Consensus 9 ~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~k 60 (69)
T 2l9r_A 9 SHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTK 60 (69)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSC
T ss_pred CcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhh
Confidence 4679999999999999999999999999999999999999999999996653
No 68
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.63 E-value=4.5e-17 Score=137.00 Aligned_cols=60 Identities=18% Similarity=0.262 Sum_probs=52.4
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCCcceeccccccccch
Q psy9181 149 KPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVSMMILFVRRP 208 (262)
Q Consensus 149 ~~k~RR~Rt~fT~~Ql~~LE~~F~~~~yps~~~R~~LA~~lgLserqVqVWFQNRRaK~k 208 (262)
..+.||+||.||..|+..||..|+.++||+..+|++||..+||+++||+|||||||+|.|
T Consensus 94 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k 153 (164)
T 2d5v_A 94 GNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSL 153 (164)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSS
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhcccc
Confidence 456788999999999999999999999999999999999999999999999999998764
No 69
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.62 E-value=4.6e-17 Score=136.26 Aligned_cols=59 Identities=19% Similarity=0.199 Sum_probs=55.2
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCCcceeccccccccch
Q psy9181 150 PKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVSMMILFVRRP 208 (262)
Q Consensus 150 ~k~RR~Rt~fT~~Ql~~LE~~F~~~~yps~~~R~~LA~~lgLserqVqVWFQNRRaK~k 208 (262)
.++||+||.||..|+..||..|..++||+..+|.+||..+||+++||+|||||||+|.|
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~K 152 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGK 152 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeecccccccccc
Confidence 46778999999999999999999999999999999999999999999999999996653
No 70
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.62 E-value=3.4e-17 Score=118.25 Aligned_cols=48 Identities=25% Similarity=0.162 Sum_probs=44.2
Q ss_pred HHHHHHHHHHH-hhcCCCCHHHHHHHHHHcCCCCCcceeccccccccch
Q psy9181 161 SHQLNALEKVF-ERTHYPDAFVREELAKKVCLSEARVQVSMMILFVRRP 208 (262)
Q Consensus 161 ~~Ql~~LE~~F-~~~~yps~~~R~~LA~~lgLserqVqVWFQNRRaK~k 208 (262)
..|+.+||+.| ..++||+..+|.+||.+|||+++||||||||||+|.|
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k 57 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEK 57 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSC
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccC
Confidence 45899999999 5799999999999999999999999999999997753
No 71
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.61 E-value=1.3e-16 Score=115.71 Aligned_cols=47 Identities=17% Similarity=0.203 Sum_probs=45.4
Q ss_pred CHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCCcceecccccccc
Q psy9181 160 NSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVSMMILFVR 206 (262)
Q Consensus 160 T~~Ql~~LE~~F~~~~yps~~~R~~LA~~lgLserqVqVWFQNRRaK 206 (262)
|.+|+.+||..|..++||+..+|++||..+||+++||++||||||+|
T Consensus 12 ~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k 58 (66)
T 3nau_A 12 TKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYR 58 (66)
T ss_dssp CHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhh
Confidence 78999999999999999999999999999999999999999999944
No 72
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.52 E-value=1.5e-15 Score=110.11 Aligned_cols=52 Identities=17% Similarity=0.129 Sum_probs=47.3
Q ss_pred cCCHHHHHHHHHHHh---hcCCCCHHHHHHHHHHcCCCCCcceeccccccccchh
Q psy9181 158 TFNSHQLNALEKVFE---RTHYPDAFVREELAKKVCLSEARVQVSMMILFVRRPL 209 (262)
Q Consensus 158 ~fT~~Ql~~LE~~F~---~~~yps~~~R~~LA~~lgLserqVqVWFQNRRaK~kr 209 (262)
.|+.+|+..|+..|. .++||+..+|++||..+||+++||++||||||+|.|+
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk 58 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQ 58 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHS
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhH
Confidence 689999999999999 9999999999999999999999999999999966543
No 73
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.51 E-value=9e-16 Score=133.03 Aligned_cols=60 Identities=25% Similarity=0.262 Sum_probs=52.6
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcC---------------------CCCCcceecccccccc
Q psy9181 148 RKPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVC---------------------LSEARVQVSMMILFVR 206 (262)
Q Consensus 148 ~~~k~RR~Rt~fT~~Ql~~LE~~F~~~~yps~~~R~~LA~~lg---------------------LserqVqVWFQNRRaK 206 (262)
..++.||.|+.|+..|+.+||+.|+.++||+..+|++||..++ |++.+|+|||||||+|
T Consensus 111 ~~~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~ 190 (194)
T 1ic8_A 111 PTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 190 (194)
T ss_dssp ------CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHH
T ss_pred ccccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhh
Confidence 3467789999999999999999999999999999999999999 9999999999999977
Q ss_pred c
Q psy9181 207 R 207 (262)
Q Consensus 207 ~ 207 (262)
.
T Consensus 191 ~ 191 (194)
T 1ic8_A 191 E 191 (194)
T ss_dssp C
T ss_pred h
Confidence 5
No 74
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.44 E-value=2.1e-14 Score=126.38 Aligned_cols=62 Identities=24% Similarity=0.274 Sum_probs=53.4
Q ss_pred ccCCCCCCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcC---------------------CCCCcceecccccc
Q psy9181 146 ERRKPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVC---------------------LSEARVQVSMMILF 204 (262)
Q Consensus 146 ~~~~~k~RR~Rt~fT~~Ql~~LE~~F~~~~yps~~~R~~LA~~lg---------------------LserqVqVWFQNRR 204 (262)
.+..++.||.|+.|++.|+.+||+.|+.++||+..+|++||..+| |++.+|++||||||
T Consensus 136 ~~~~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR 215 (221)
T 2h8r_A 136 EPTNKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRR 215 (221)
T ss_dssp ------CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHH
T ss_pred ccccCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhh
Confidence 345677899999999999999999999999999999999999988 89999999999999
Q ss_pred ccc
Q psy9181 205 VRR 207 (262)
Q Consensus 205 aK~ 207 (262)
++.
T Consensus 216 ~~~ 218 (221)
T 2h8r_A 216 KEE 218 (221)
T ss_dssp TTC
T ss_pred hhh
Confidence 664
No 75
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=1.4e-13 Score=100.56 Aligned_cols=46 Identities=13% Similarity=0.067 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCCcceecccccccc
Q psy9181 161 SHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVSMMILFVR 206 (262)
Q Consensus 161 ~~Ql~~LE~~F~~~~yps~~~R~~LA~~lgLserqVqVWFQNRRaK 206 (262)
++|+..||.+|..+++|+.+++..||..+||+.++|||||||||++
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 5789999999999999999999999999999999999999999954
No 76
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.32 E-value=8.5e-13 Score=100.97 Aligned_cols=58 Identities=14% Similarity=0.097 Sum_probs=51.4
Q ss_pred CcCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHcCCCCCcceeccccccccchhhhHHH
Q psy9181 157 TTFNSHQLNALEKVFER---THYPDAFVREELAKKVCLSEARVQVSMMILFVRRPLALWVA 214 (262)
Q Consensus 157 t~fT~~Ql~~LE~~F~~---~~yps~~~R~~LA~~lgLserqVqVWFQNRRaK~kr~Kwrr 214 (262)
..|+.+++..|+..|.. ++||+..+|++||..+||+++||++||||||+|.++...++
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~~~ 70 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRK 70 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHHHh
Confidence 56899999999999987 99999999999999999999999999999997764443333
No 77
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.31 E-value=3.4e-13 Score=125.18 Aligned_cols=55 Identities=24% Similarity=0.289 Sum_probs=52.2
Q ss_pred CCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCCcceeccccccccc
Q psy9181 153 RRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVSMMILFVRR 207 (262)
Q Consensus 153 RR~Rt~fT~~Ql~~LE~~F~~~~yps~~~R~~LA~~lgLserqVqVWFQNRRaK~ 207 (262)
++.|+.|+..|+.+||+.|+.++||+..+|++||+++||+++||||||||||+|.
T Consensus 366 ~~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~ 420 (421)
T 1mh3_A 366 TAAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRS 420 (421)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCC
T ss_pred hhhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhccccc
Confidence 4567889999999999999999999999999999999999999999999999775
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.67 E-value=4.4e-09 Score=67.69 Aligned_cols=20 Identities=0% Similarity=0.007 Sum_probs=15.3
Q ss_pred CcceeccccccccchhhhHH
Q psy9181 194 ARVQVSMMILFVRRPLALWV 213 (262)
Q Consensus 194 rqVqVWFQNRRaK~kr~Kwr 213 (262)
+||+|||||||+|.||....
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~ 20 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFN 20 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHH
T ss_pred CCceeccHHHHHHHHHHhHH
Confidence 69999999999776544443
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.94 E-value=0.05 Score=39.31 Aligned_cols=40 Identities=15% Similarity=0.060 Sum_probs=36.8
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHcCCCCCcceeccccc
Q psy9181 164 LNALEKVFERTHYPDAFVREELAKKVCLSEARVQVSMMIL 203 (262)
Q Consensus 164 l~~LE~~F~~~~yps~~~R~~LA~~lgLserqVqVWFQNR 203 (262)
.+.|+++|...+.+....-..|..+..|+..||+-||--|
T Consensus 18 ~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa~k 57 (70)
T 2ys9_A 18 IQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDSR 57 (70)
T ss_dssp CHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred chHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHHhc
Confidence 4679999999999999999999999999999999999543
No 80
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=69.22 E-value=0.096 Score=42.98 Aligned_cols=30 Identities=3% Similarity=-0.101 Sum_probs=21.6
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHhhcCCCCH
Q psy9181 150 PKPRRNRTTFNSHQLNALEKVFERTHYPDA 179 (262)
Q Consensus 150 ~k~RR~Rt~fT~~Ql~~LE~~F~~~~yps~ 179 (262)
.+.+|+||.|+..|++.|+..|+.++||..
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~~~~~~~~ 163 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQANPVEVQ 163 (169)
T ss_dssp -------EEEECCCCEECCSSCCCCCCCCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHhCCCCccc
Confidence 456789999999999999999999999864
No 81
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=53.57 E-value=5.8 Score=26.33 Aligned_cols=45 Identities=13% Similarity=0.108 Sum_probs=30.7
Q ss_pred CCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCCcceeccc
Q psy9181 156 RTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVSMM 201 (262)
Q Consensus 156 Rt~fT~~Ql~~LE~~F~~~~yps~~~R~~LA~~lgLserqVqVWFQ 201 (262)
|..||.+....+...+... ........++|+++|++..+|..|..
T Consensus 3 r~~ys~efK~~~~~~~~~g-~s~~~~~~~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRND-NDCKGNQRATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHC-TTTTTCHHHHHHHTTSCHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHHHcC-CCcchHHHHHHHHHCcCHHHHHHHHH
Confidence 3468988877775444433 22111245899999999999999974
No 82
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=51.58 E-value=10 Score=27.16 Aligned_cols=45 Identities=7% Similarity=0.055 Sum_probs=31.8
Q ss_pred CCCCCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCCcceeccc
Q psy9181 152 PRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVSMM 201 (262)
Q Consensus 152 ~RR~Rt~fT~~Ql~~LE~~F~~~~yps~~~R~~LA~~lgLserqVqVWFQ 201 (262)
+++.+..|+.++....-..+... . ...++|+.+|++...|.-|..
T Consensus 16 ~~~~~~~ys~e~k~~~v~~~~~g-~----s~~~iA~~~gIs~sTl~rW~k 60 (87)
T 2elh_A 16 GKRPLRSLTPRDKIHAIQRIHDG-E----SKASVARDIGVPESTLRGWCK 60 (87)
T ss_dssp CSSCCSSCCHHHHHHHHHHHHHT-C----CHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHCC-C----CHHHHHHHHCcCHHHHHHHHH
Confidence 34556778998866555555432 2 245789999999999999973
No 83
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=49.30 E-value=9.8 Score=28.81 Aligned_cols=47 Identities=9% Similarity=0.085 Sum_probs=36.6
Q ss_pred CCCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCCcceecccccc
Q psy9181 155 NRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVSMMILF 204 (262)
Q Consensus 155 ~Rt~fT~~Ql~~LE~~F~~~~yps~~~R~~LA~~lgLserqVqVWFQNRR 204 (262)
+|..||.++...+-..+..+..... .++|+.+|++...|.-|..+++
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~~---~~~A~~~gvs~stl~~~~~~~~ 50 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLRK---GEIARRFNIPPSTLSTILKNKR 50 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSCH---HHHHHHHTCCHHHHHHHHHTHH
T ss_pred cceeCCHHHHHHHHHHHHHCCCCcH---HHHHHHhCCCHHHHHHHHhchh
Confidence 5678999998888777755555443 3689999999999999987654
No 84
>2jpk_A Bacteriocin lactococcin-G subunit beta; peptide, antimicrobial, membrane bound, antimicrobial protein; NMR {Lactococcus lactis} PDB: 2jpm_A
Probab=39.85 E-value=7.4 Score=23.77 Aligned_cols=9 Identities=56% Similarity=1.989 Sum_probs=7.2
Q ss_pred chhhhHHHH
Q psy9181 16 GRWGWAAWL 24 (262)
Q Consensus 16 ~~~~~~~~~ 24 (262)
+.|+|.+|+
T Consensus 1 ~~~~wl~w~ 9 (35)
T 2jpk_A 1 KKWGWLAWV 9 (35)
T ss_dssp CCCCHHHHH
T ss_pred CCccccccc
Confidence 358899997
No 85
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=38.45 E-value=55 Score=25.26 Aligned_cols=40 Identities=10% Similarity=0.162 Sum_probs=31.8
Q ss_pred CCCcCCHHHHHHHHHHHhh-----cCCCCHHHHHHHHHHcCCCCC
Q psy9181 155 NRTTFNSHQLNALEKVFER-----THYPDAFVREELAKKVCLSEA 194 (262)
Q Consensus 155 ~Rt~fT~~Ql~~LE~~F~~-----~~yps~~~R~~LA~~lgLser 194 (262)
+|..+|.+|+.+|...|.. +-+.+..+-..+.+.+|..+.
T Consensus 6 ~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~ 50 (153)
T 3i5g_B 6 RRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPP 50 (153)
T ss_dssp -CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCCC
T ss_pred cccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCcc
Confidence 3566999999999999975 457888888888888886654
No 86
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=36.18 E-value=11 Score=30.11 Aligned_cols=40 Identities=10% Similarity=-0.042 Sum_probs=30.1
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHcCCCCCcceecccccc
Q psy9181 164 LNALEKVFERTHYPDAFVREELAKKVCLSEARVQVSMMILF 204 (262)
Q Consensus 164 l~~LE~~F~~~~yps~~~R~~LA~~lgLserqVqVWFQNRR 204 (262)
+....+.|...-|-... -.+||+..|++...+-..|.|+-
T Consensus 34 l~aa~~lf~~~G~~~~t-v~~IA~~agvs~~t~Y~~F~sK~ 73 (215)
T 2qko_A 34 VNAAIEVLAREGARGLT-FRAVDVEANVPKGTASNYFPSRD 73 (215)
T ss_dssp HHHHHHHHHHTCTTTCC-HHHHHHHSSSTTTCHHHHCSCHH
T ss_pred HHHHHHHHHHhChhhcc-HHHHHHHcCCCcchHHHhCCCHH
Confidence 34455667777765443 45789999999999999998864
No 87
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=30.51 E-value=25 Score=20.88 Aligned_cols=40 Identities=13% Similarity=0.130 Sum_probs=27.8
Q ss_pred cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCCcceecccc
Q psy9181 158 TFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVSMMI 202 (262)
Q Consensus 158 ~fT~~Ql~~LE~~F~~~~yps~~~R~~LA~~lgLserqVqVWFQN 202 (262)
.++.++...+...+... + ...++|+.+|++...|..|...
T Consensus 5 ~l~~~~~~~i~~~~~~g-~----s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHhh
Confidence 46777765555555433 2 2457899999999999988743
No 88
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=27.20 E-value=21 Score=21.72 Aligned_cols=40 Identities=15% Similarity=0.223 Sum_probs=28.0
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCCcceeccccc
Q psy9181 159 FNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVSMMIL 203 (262)
Q Consensus 159 fT~~Ql~~LE~~F~~~~yps~~~R~~LA~~lgLserqVqVWFQNR 203 (262)
++.++...+...+... . ...++|+.+|++...|.-|+...
T Consensus 6 ~~~~~~~~i~~l~~~g--~---s~~~ia~~lgvs~~Tv~r~l~~~ 45 (52)
T 1jko_C 6 INKHEQEQISRLLEKG--H---PRQQLAIIFGIGVSTLYRYFPAS 45 (52)
T ss_dssp SCTTHHHHHHHHHHTT--C---CHHHHHHTTSCCHHHHHHHSCTT
T ss_pred CCHHHHHHHHHHHHcC--C---CHHHHHHHHCCCHHHHHHHHHHc
Confidence 5666666555555433 2 24578999999999999998643
No 89
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TET streptomyces coelicolor A3(2), PSI-2; 1.70A {Streptomyces coelicolor}
Probab=25.97 E-value=20 Score=30.14 Aligned_cols=49 Identities=10% Similarity=0.032 Sum_probs=32.3
Q ss_pred CCCcCCHHHHH-HHHHHHhhcCCCCHHHHHHHHHHcCCCCCcceecccccc
Q psy9181 155 NRTTFNSHQLN-ALEKVFERTHYPDAFVREELAKKVCLSEARVQVSMMILF 204 (262)
Q Consensus 155 ~Rt~fT~~Ql~-~LE~~F~~~~yps~~~R~~LA~~lgLserqVqVWFQNRR 204 (262)
.|...+.+++. .-.+.|...-|-... -.+||+++|++...+-..|.||-
T Consensus 25 ~~~~~tr~~Il~aA~~l~~~~G~~~~s-~~~IA~~aGvs~~tlY~hF~~K~ 74 (241)
T 2hxi_A 25 GRRRWSTEQILDAAAELLLAGDAETFS-VRKLAASLGTDSSSLYRHFRNKT 74 (241)
T ss_dssp ---CCCHHHHHHHHHHHHSSSSCCCCC-HHHHHHHTTSCHHHHHHHTSSHH
T ss_pred cchhhHHHHHHHHHHHHHHhcCcccCC-HHHHHHHhCcCHHHHHHHcCCHH
Confidence 34455665543 445556666654444 44789999999999999999864
No 90
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=25.67 E-value=56 Score=25.46 Aligned_cols=48 Identities=19% Similarity=0.248 Sum_probs=35.9
Q ss_pred CCCCCcCCHHHHHHHHHHH-hhcCCCCHHHHHHHHH----Hc--CCCCCcceeccccc
Q psy9181 153 RRNRTTFNSHQLNALEKVF-ERTHYPDAFVREELAK----KV--CLSEARVQVSMMIL 203 (262)
Q Consensus 153 RR~Rt~fT~~Ql~~LE~~F-~~~~yps~~~R~~LA~----~l--gLserqVqVWFQNR 203 (262)
+++|..+|.+|...+-..+ +.++..... +||. .+ +++...|.-|..|+
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~q~---~la~wa~~~f~~~is~stis~ilk~k 60 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSGQQ---DLIEWFREKFGKDISQPSVSQILSSK 60 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCCHH---HHHHHHHHHHSSCCSSSSTTHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCCHH---HHHHHHHHHHCCCCcHHHHHHHHhhH
Confidence 5678899999999998888 566665443 4566 77 77888888887553
No 91
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=22.98 E-value=29 Score=24.68 Aligned_cols=39 Identities=10% Similarity=0.284 Sum_probs=28.2
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCCcceecccc
Q psy9181 159 FNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVSMMI 202 (262)
Q Consensus 159 fT~~Ql~~LE~~F~~~~yps~~~R~~LA~~lgLserqVqVWFQN 202 (262)
++..|...|.-.|.... .-.++|..+|+++..|+.....
T Consensus 38 L~~~~r~vl~l~~~~g~-----s~~eIA~~lgis~~tV~~~l~r 76 (92)
T 3hug_A 38 LSAEHRAVIQRSYYRGW-----STAQIATDLGIAEGTVKSRLHY 76 (92)
T ss_dssp SCHHHHHHHHHHHTSCC-----CHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHH
Confidence 56777777766553332 3468999999999999988753
No 92
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=22.62 E-value=38 Score=25.00 Aligned_cols=42 Identities=17% Similarity=0.105 Sum_probs=31.8
Q ss_pred CCcCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCCCcceeccccc
Q psy9181 156 RTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVSMMIL 203 (262)
Q Consensus 156 Rt~fT~~Ql~~LE~~F~~~~yps~~~R~~LA~~lgLserqVqVWFQNR 203 (262)
...+|+.|...|.-.++-- .-.++|..+++++..|+...++=
T Consensus 32 ~~~Lt~re~~Vl~l~~~G~------s~~EIA~~L~iS~~TV~~~l~ri 73 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEGF------LVTEIAKKLNRSIKTISSQKKSA 73 (99)
T ss_dssp SSSCCHHHHHHHHHHHHTC------CHHHHHHHHTSCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHH
Confidence 3458999999997755322 23689999999999999887643
No 93
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=21.58 E-value=51 Score=23.47 Aligned_cols=42 Identities=7% Similarity=0.183 Sum_probs=28.8
Q ss_pred CCcCCHHHHHHHHHHHhhc-CCCCHHHHHHHHHHcCCCCCcceeccc
Q psy9181 156 RTTFNSHQLNALEKVFERT-HYPDAFVREELAKKVCLSEARVQVSMM 201 (262)
Q Consensus 156 Rt~fT~~Ql~~LE~~F~~~-~yps~~~R~~LA~~lgLserqVqVWFQ 201 (262)
|..||.++....-..+... .. ...++|+.+|++...|..|..
T Consensus 3 r~~ys~e~k~~~v~~~~~~~g~----s~~~ia~~~gIs~~tl~rW~~ 45 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENSDGA----SLQQIANDLGINRVTLKNWII 45 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTGGGS----CHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCC----hHHHHHHHHCcCHHHHHHHHH
Confidence 3568888776555555332 22 245789999999999888863
No 94
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=20.09 E-value=58 Score=25.71 Aligned_cols=39 Identities=10% Similarity=0.165 Sum_probs=30.2
Q ss_pred CCcCCHHHHHHHHHHHhh-----cCCCCHHHHHHHHHHcCCCCC
Q psy9181 156 RTTFNSHQLNALEKVFER-----THYPDAFVREELAKKVCLSEA 194 (262)
Q Consensus 156 Rt~fT~~Ql~~LE~~F~~-----~~yps~~~R~~LA~~lgLser 194 (262)
++.||.+|+.+|+..|.. +-+.+..+-..+.+.+|+.+.
T Consensus 2 a~~Lt~eqi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~ 45 (176)
T 2lhi_A 2 SSNLTEEQIAEFKEAFALFDKDNNGSISSSELATVMRSLGLSPS 45 (176)
T ss_dssp CCCCCTTGGGHHHHHHHTTCSSCSSCBCHHHHHHHHHHHTCCCC
T ss_pred CCcCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHcCCChh
Confidence 467899999999999975 447888887777777776543
Done!