RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9181
(262 letters)
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription
regulation; HET: DNA; 2.00A {Drosophila melanogaster}
SCOP: a.4.1.1 PDB: 3a01_B
Length = 81
Score = 100 bits (251), Expect = 1e-27
Identities = 31/62 (50%), Positives = 43/62 (69%)
Query: 137 KSENDDYDYERRKPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARV 196
S+ + K K RR+RTTF++ QL+ LE+ FERT YPD + REELA++ L+EAR+
Sbjct: 3 ISDCESEPGIALKRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARI 62
Query: 197 QV 198
QV
Sbjct: 63 QV 64
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
a.4.1.1
Length = 80
Score = 94.8 bits (236), Expect = 2e-25
Identities = 30/50 (60%), Positives = 35/50 (70%)
Query: 149 KPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQV 198
+RNRT+F Q+ ALEK FERTHYPD F RE LA K+ L EAR+QV
Sbjct: 4 GSSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQV 53
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA
binding helix- turn-helix motif, structural genomics,
NPPSFA; NMR {Mus musculus}
Length = 80
Score = 93.3 bits (232), Expect = 7e-25
Identities = 27/50 (54%), Positives = 34/50 (68%)
Query: 149 KPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQV 198
RR RTTF QL+ LE +F +T YPD F+REE+A K+ L E+RVQV
Sbjct: 4 GSSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQV 53
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the
DNA binding helix- turn-helix motif, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 92.0 bits (229), Expect = 2e-24
Identities = 25/50 (50%), Positives = 32/50 (64%)
Query: 149 KPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQV 198
RR+RT F QL ALE +F+ T YPD RE+LA+KV L E +V+V
Sbjct: 4 GSSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEV 53
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the
DNA binding helix- turn-helix motif, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 91.7 bits (228), Expect = 3e-24
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 149 KPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQV 198
+R RT+F HQL ++ F H PDA ++LA+K L++ +QV
Sbjct: 4 GSSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQV 53
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA
complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P
2lkx_A* 2l7m_P
Length = 68
Score = 90.4 bits (225), Expect = 6e-24
Identities = 25/48 (52%), Positives = 29/48 (60%)
Query: 151 KPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQV 198
RR RT F S QL LE F+R YPD REE+A L+EARV+V
Sbjct: 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRV 49
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant,
DNA binding protein, developmental protein, disease
mutation, DNA-binding; NMR {Homo sapiens}
Length = 67
Score = 88.9 bits (221), Expect = 3e-23
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 153 RRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQV 198
RR RT F +Q+ LE VF YP + E+LA+K+ L R+Q+
Sbjct: 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQI 47
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein,
homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP:
a.4.1.1
Length = 66
Score = 87.0 bits (216), Expect = 1e-22
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 151 KPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQV 198
K R RT N QL+ L + PDA ++E+L + LS ++V
Sbjct: 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRV 49
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three
helices with the DNA binding helix- turn-helix motif,
structural genomics; NMR {Homo sapiens}
Length = 70
Score = 86.6 bits (215), Expect = 2e-22
Identities = 14/50 (28%), Positives = 22/50 (44%)
Query: 149 KPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQV 198
R +RT F +QL L+ F+ YP E+L+ + L + V
Sbjct: 4 GSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVV 53
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three
helices with the DNA binding helix- turn-helix motif,
structural genomics; NMR {Homo sapiens}
Length = 80
Score = 85.2 bits (211), Expect = 1e-21
Identities = 15/61 (24%), Positives = 25/61 (40%)
Query: 138 SENDDYDYERRKPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQ 197
S + + +R RTT QL L + + P + + +A +V L + VQ
Sbjct: 3 SGSSGGTGGEEPQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQ 62
Query: 198 V 198
V
Sbjct: 63 V 63
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein,
DNA-binding, N gene regulation; 1.00A {Drosophila
melanogaster} PDB: 3lnq_A 3cmy_A
Length = 60
Score = 84.2 bits (209), Expect = 1e-21
Identities = 28/44 (63%), Positives = 32/44 (72%)
Query: 155 NRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQV 198
+ TF S QL LEK F RTHYPD F REELA K+ L+EAR+QV
Sbjct: 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQV 45
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three
helices with the DNA binding helix- turn-helix motif,
structural genomics; NMR {Homo sapiens}
Length = 70
Score = 75.8 bits (187), Expect = 3e-18
Identities = 12/50 (24%), Positives = 21/50 (42%)
Query: 149 KPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQV 198
+R RT QL L + F+ + P +E+A K L + ++
Sbjct: 4 GSSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKH 53
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac
development, riken structural genomics/proteomics
initiative, RSGI, transcription; NMR {Mus musculus}
SCOP: a.4.1.1
Length = 72
Score = 73.2 bits (180), Expect = 3e-17
Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 153 RRNRTTFNSHQLNALEKVFERTH-YPDAFVREELAKKVCLSEARVQV 198
T Q+ LE F + + +PD +A + L+E + Q
Sbjct: 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQK 48
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex,
helix-turn-helix (HTH), DNA-binding, homeobox, nucleus,
transcription regulation; 2.51A {Homo sapiens}
Length = 151
Score = 73.9 bits (181), Expect = 1e-16
Identities = 24/100 (24%), Positives = 37/100 (37%), Gaps = 7/100 (7%)
Query: 106 SQSQGGRGE-------DESKLTSKRHFWFAKLQMSIRVKSENDDYDYERRKPKPRRNRTT 158
SQS R E KL W + ++ + +N K R+ RT+
Sbjct: 40 SQSAISRFEKLDITPKSAQKLKPVLEKWLNEAELRNQEGQQNLMEFVGGEPSKKRKRRTS 99
Query: 159 FNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQV 198
F + AL FE+ P E+AK++ V+V
Sbjct: 100 FTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRV 139
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor,
structural genomics, loop insertion, NPPSFA; NMR {Homo
sapiens} SCOP: a.4.1.1
Length = 95
Score = 69.7 bits (170), Expect = 1e-15
Identities = 14/65 (21%), Positives = 21/65 (32%), Gaps = 15/65 (23%)
Query: 149 KPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVC---------------LSE 193
R +R T+ L +E F YPD REE+A ++
Sbjct: 4 GSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTS 63
Query: 194 ARVQV 198
+V
Sbjct: 64 LKVYN 68
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP:
a.4.1.1
Length = 73
Score = 68.2 bits (167), Expect = 2e-15
Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 153 RRNRTTFNSHQLNALEKVFERTH-YPDAFVREELAKKVCLSEARVQV 198
+ + Q+ LE F + + +PD +A + L+E + Q
Sbjct: 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQK 49
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein,
KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 76
Score = 67.8 bits (166), Expect = 3e-15
Identities = 13/53 (24%), Positives = 19/53 (35%)
Query: 146 ERRKPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQV 198
+ + QL+AL+ F R +P E L K LS V+
Sbjct: 2 SSGSSGASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRK 54
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation,
DNA-binding, POU domain, diabetes, disease mutation,
MODY3, transcription/DNA comple; 2.60A {Homo sapiens}
SCOP: a.4.1.1 a.35.1.1
Length = 194
Score = 71.1 bits (173), Expect = 4e-15
Identities = 17/100 (17%), Positives = 31/100 (31%)
Query: 98 SHLVWGNLSQSQGGRGEDESKLTSKRHFWFAKLQMSIRVKSENDDYDYERRKPKPRRNRT 157
S + R + K+ + + + + E K RRNR
Sbjct: 61 SQHLNKGTPMKTQKRAALYTWYVRKQREVAQQFTHAGQGGLIEEPTGDELPTKKGRRNRF 120
Query: 158 TFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQ 197
+ L + +ER P RE L ++ +E +
Sbjct: 121 KWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQR 160
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription
factor DNA complex, pore, stem cells; HET: DNA; 2.80A
{Mus musculus} PDB: 1ocp_A
Length = 155
Score = 69.4 bits (169), Expect = 7e-15
Identities = 12/70 (17%), Positives = 30/70 (42%)
Query: 129 KLQMSIRVKSENDDYDYERRKPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKK 188
++ + ++ + E +R RT+ + +LE +F ++ P +A +
Sbjct: 73 WVEEADNNENLQEISKSETLVQARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQ 132
Query: 189 VCLSEARVQV 198
+ L + V+V
Sbjct: 133 LGLEKDVVRV 142
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary,
CPHD, POU domain, transcription factor,
transcription/DNA complex; HET: DNA; 2.30A {Rattus
norvegicus} SCOP: a.4.1.1 a.35.1.1
Length = 146
Score = 68.1 bits (166), Expect = 2e-14
Identities = 21/117 (17%), Positives = 44/117 (37%), Gaps = 4/117 (3%)
Query: 86 VWVDFTISAGNSSHLVWGNLSQSQGGRGEDESKLTSKRHFWFAKLQMSIRVKSENDDYDY 145
+ + +T + + SQ E+ S ++ K +S ++
Sbjct: 17 IKLGYTQTNVGEALAAVHGSEFSQTTICRFENLQLSFKNACKLKAILSKWLEEAEQVGAL 76
Query: 146 ERRK----PKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQV 198
K + R+ RTT + +ALE+ F P + +A+++ L + V+V
Sbjct: 77 YNEKVGANERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRV 133
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA
complex, SOX; 2.05A {Mus musculus}
Length = 164
Score = 63.9 bits (155), Expect = 7e-13
Identities = 14/50 (28%), Positives = 22/50 (44%)
Query: 149 KPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQV 198
+ + R+ RT+ ALE F + P A LA + L + V+V
Sbjct: 96 QGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRV 145
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo,
protein-DNA, human disease; 3.20A {Homo sapiens}
Length = 221
Score = 65.0 bits (157), Expect = 8e-13
Identities = 17/83 (20%), Positives = 27/83 (32%), Gaps = 21/83 (25%)
Query: 137 KSENDDYDYERRKPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVC------ 190
++DD E K RRNR + L + ++R P RE L ++
Sbjct: 127 PGQSDDACSEPTNKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQ 186
Query: 191 ---------------LSEARVQV 198
++E RV
Sbjct: 187 RGVSPSKAHGLGSNLVTEVRVYN 209
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU
domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP:
a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A
1oct_C* 1pou_A 1pog_A 1hdp_A
Length = 160
Score = 61.9 bits (150), Expect = 4e-12
Identities = 11/62 (17%), Positives = 26/62 (41%)
Query: 137 KSENDDYDYERRKPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARV 196
+ + R+ RT+ ++ ALEK F P + +A+++ + + +
Sbjct: 86 SPSALNSPGIEGLSRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVI 145
Query: 197 QV 198
+V
Sbjct: 146 RV 147
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor,
homeodomain, domain swapping, structural oxford protein
production facility, OPPF; 2.70A {Homo sapiens}
Length = 66
Score = 57.9 bits (140), Expect = 1e-11
Identities = 7/48 (14%), Positives = 18/48 (37%)
Query: 151 KPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQV 198
+ Q+ L+ F ++ +PD L + L+ + ++
Sbjct: 3 HHHHHHRKKTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKK 50
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding
proteins/DNA), complex, DNA- binding protein, DNA; HET:
DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB:
1f43_A 1yrn_A*
Length = 61
Score = 57.2 bits (139), Expect = 2e-11
Identities = 14/51 (27%), Positives = 29/51 (56%)
Query: 148 RKPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQV 198
+K K + +++ + LE+VF R ++ +EE+AKK ++ +V+V
Sbjct: 1 KKEKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRV 51
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A
{Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Length = 99
Score = 58.3 bits (140), Expect = 2e-11
Identities = 13/46 (28%), Positives = 19/46 (41%)
Query: 149 KPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEA 194
K RRNR + L + +ER P RE L ++ +E
Sbjct: 6 TKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAEC 51
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Length = 71
Score = 54.4 bits (131), Expect = 2e-10
Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Query: 151 KPRRNRTTFNSHQLNALEKVFERT-HYPDAFVREELAKKVCLSEARVQV 198
R+RT + L L+ YPD L+ ++ L + +
Sbjct: 6 SGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIK 54
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with
the DNA binding helix- turn-helix motif, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 52.5 bits (126), Expect = 2e-09
Identities = 21/61 (34%), Positives = 32/61 (52%)
Query: 138 SENDDYDYERRKPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQ 197
S + + + K RR+RT F QL LEK FE+ Y R +LA+ + LS+ +V+
Sbjct: 3 SGSSGGEPGTKAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVK 62
Query: 198 V 198
Sbjct: 63 T 63
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex,
DNA-binding, homeobox, NUC developmental protein; 2.70A
{Drosophila melanogaster}
Length = 93
Score = 52.2 bits (125), Expect = 3e-09
Identities = 17/52 (32%), Positives = 30/52 (57%)
Query: 147 RRKPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQV 198
R PK ++ RT+F Q+ LEK F + Y + R LA+ + +++A+V+
Sbjct: 12 RTPPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKT 63
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three
helices with the DNA binding helix- turn-helix motif,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 89
Score = 51.1 bits (122), Expect = 6e-09
Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 3/61 (4%)
Query: 138 SENDDYDYERRKPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQ 197
S Y P+ + +T Q+ LE F ++ +P + L + LS +
Sbjct: 2 SSGSSGAYPDFAPQKFKEKT---QGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREID 58
Query: 198 V 198
Sbjct: 59 S 59
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics,
protein structure initiative, PSI, center for eukaryotic
structural genomics; NMR {Homo sapiens}
Length = 84
Score = 49.8 bits (119), Expect = 2e-08
Identities = 16/61 (26%), Positives = 28/61 (45%)
Query: 138 SENDDYDYERRKPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQ 197
+ ++ K ++ RT F+S QL L F+R Y +EL+ + LS +V+
Sbjct: 8 ENSVAKKEDKVPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVK 67
Query: 198 V 198
Sbjct: 68 T 68
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic
development, complex (homeodomain/DNA); HET: DNA; NMR
{Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P*
1vnd_A 1qry_A
Length = 77
Score = 49.4 bits (118), Expect = 2e-08
Identities = 16/50 (32%), Positives = 22/50 (44%)
Query: 147 RRKPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARV 196
K R+ R F Q LE+ F + Y A RE LA + L+ +V
Sbjct: 4 GLPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQV 53
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Length = 70
Score = 48.6 bits (116), Expect = 3e-08
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 150 PKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQV 198
+ + F++ Q LEK FE Y R+ LAK + LSE +V+
Sbjct: 5 SSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKT 53
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 70
Score = 48.6 bits (116), Expect = 3e-08
Identities = 17/49 (34%), Positives = 30/49 (61%)
Query: 150 PKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQV 198
R+ RT ++S QL AL++ F++T Y R ELA + L++ +V++
Sbjct: 5 SSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKI 53
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural
genomics consortiu PSI-biology, protein structure
initiative; NMR {Homo sapiens}
Length = 69
Score = 47.7 bits (114), Expect = 6e-08
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 151 KPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQV 198
+ + + Q+ LE+ F Y A R LAK + L+E +V++
Sbjct: 3 HHHHHHSHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKI 50
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain,
transcription factor, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: a.4.1.1
Length = 89
Score = 48.1 bits (114), Expect = 7e-08
Identities = 8/50 (16%), Positives = 17/50 (34%), Gaps = 3/50 (6%)
Query: 149 KPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQV 198
P+ + +T + QL L+ F + L + L+ +
Sbjct: 11 TPQKFKEKT---AEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDA 57
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three
helices with the DNA binding helix- turn-helix motif,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 75
Score = 47.6 bits (113), Expect = 7e-08
Identities = 10/51 (19%), Positives = 17/51 (33%), Gaps = 3/51 (5%)
Query: 148 RKPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQV 198
P + R QL ALE F + P + L + ++ +
Sbjct: 6 SGPTKYKERA---PEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDS 53
>2d5v_A Hepatocyte nuclear factor 6; transcription factor,
transcription-DNA complex; 2.00A {Rattus norvegicus}
PDB: 1s7e_A
Length = 164
Score = 49.9 bits (118), Expect = 8e-08
Identities = 10/67 (14%), Positives = 26/67 (38%)
Query: 132 MSIRVKSENDDYDYERRKPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCL 191
+ + + + R P++ R F Q L +F+ P ++ +++++ L
Sbjct: 77 LRLAACKRKEQEHGKDRGNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGL 136
Query: 192 SEARVQV 198
+ V
Sbjct: 137 ELSTVSN 143
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA
complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Length = 58
Score = 46.5 bits (111), Expect = 2e-07
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 153 RRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARV 196
R+ RT F + QL ALE+ F + Y R E + + L+E +V
Sbjct: 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQV 44
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus,
transcription-DNA CO; 1.70A {Homo sapiens}
Length = 58
Score = 46.1 bits (110), Expect = 2e-07
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 153 RRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARV 196
R+ R F+ Q+ LE+ F++ Y A R++LA + L+ +V
Sbjct: 3 RKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQV 46
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription,
transcription facto developmental protein, transcription
regulation, NUC homeobox; 2.6A {Mus musculus}
Length = 62
Score = 46.1 bits (110), Expect = 2e-07
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 151 KPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARV 196
++ RT F+ QL AL+ F++ Y +EL+ + LS +V
Sbjct: 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQV 47
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding
protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Length = 68
Score = 46.2 bits (110), Expect = 2e-07
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 153 RRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARV 196
R+ R F+ Q+ LE+ F++ Y A RE LA + L+ +V
Sbjct: 3 RKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQV 46
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix,
helix-turn-helix; NMR {Drosophila melanogaster} SCOP:
a.4.1.1
Length = 68
Score = 45.9 bits (109), Expect = 2e-07
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 152 PRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQV 198
PRR RTTF S Q+ LE+ F + Y A +L+ K+ L A+V++
Sbjct: 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKI 48
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA
complex, transcription/DNA complex; 2.00A {Drosophila
melanogaster} SCOP: a.4.1.1
Length = 60
Score = 43.5 bits (103), Expect = 2e-06
Identities = 19/46 (41%), Positives = 26/46 (56%)
Query: 153 RRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQV 198
RR RT F QL LEK F + +Y R ELA ++ L E+ ++V
Sbjct: 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKV 47
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor,
homeodomain, structural genomics, oxford production
facility, OPPF, transcription; 2.60A {Homo sapiens}
Length = 96
Score = 43.6 bits (102), Expect = 3e-06
Identities = 12/56 (21%), Positives = 21/56 (37%)
Query: 143 YDYERRKPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQV 198
+ K QL+ L+ F RT +P ++LAK+ L+ +
Sbjct: 16 FQGPAPKSGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVS 71
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA
binding protein/DNA), transcription/DNA complex; HET:
DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB:
1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A
1du0_A* 1ztr_A 1enh_A 2p81_A
Length = 61
Score = 41.9 bits (99), Expect = 6e-06
Identities = 15/46 (32%), Positives = 29/46 (63%)
Query: 153 RRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQV 198
+R RT F+S QL L++ F Y R++L+ ++ L+EA++++
Sbjct: 4 KRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKI 49
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex,
DNA-binding protein, protein/DNA complex; HET: DNA;
2.35A {Homo sapiens} SCOP: a.4.1.1
Length = 97
Score = 42.6 bits (100), Expect = 8e-06
Identities = 19/67 (28%), Positives = 28/67 (41%)
Query: 132 MSIRVKSENDDYDYERRKPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCL 191
M ++ E P RT F + QL LEK F Y R E+A + L
Sbjct: 14 MKVKRNPPKTAKVSEPGLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLEL 73
Query: 192 SEARVQV 198
+E +V++
Sbjct: 74 NETQVKI 80
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA
complex, transcription/DNA complex; 2.42A {Mesocricetus
auratus}
Length = 63
Score = 41.2 bits (97), Expect = 1e-05
Identities = 16/48 (33%), Positives = 23/48 (47%)
Query: 151 KPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQV 198
+R RT + QL LEK F Y R ELA + L+E +++
Sbjct: 2 SNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKI 49
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental
protein, DNA-binding, N gene regulation; 1.54A {Homo
sapiens}
Length = 56
Score = 40.4 bits (95), Expect = 2e-05
Identities = 14/42 (33%), Positives = 25/42 (59%)
Query: 157 TTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQV 198
T+F+ Q+ LE+ F R Y + R LAK + +++A+V+
Sbjct: 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKT 43
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A
{Drosophila melanogaster} PDB: 2r5z_A*
Length = 88
Score = 39.8 bits (93), Expect = 7e-05
Identities = 14/49 (28%), Positives = 26/49 (53%)
Query: 150 PKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQV 198
+ +R RT++ +Q LEK F Y R E+A + L+E ++++
Sbjct: 26 GETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKI 74
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR
{Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A
1hom_A 1ftz_A
Length = 68
Score = 38.9 bits (91), Expect = 7e-05
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 152 PRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQV 198
+R R T+ +Q LEK F Y R E+A + L+E ++++
Sbjct: 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKI 48
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation,
helix-turn-helix, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: a.4.1.1
Length = 70
Score = 39.0 bits (91), Expect = 9e-05
Identities = 10/49 (20%), Positives = 22/49 (44%)
Query: 150 PKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQV 198
R+ R ++ QL LE+ + + R +++ LSE ++ +
Sbjct: 5 SSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITI 53
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA
binding, homeodomain, homeotic proteins, development,
specificity; HET: DNA; 2.40A {Drosophila melanogaster}
SCOP: a.4.1.1 PDB: 9ant_A*
Length = 81
Score = 39.0 bits (91), Expect = 1e-04
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 150 PKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQV 198
RR R T+ +Q LEK F HY R E+A + L+E ++++
Sbjct: 18 GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKI 66
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex,
HOX hexapeptide, TALE homeodomain, homeodomain
interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB:
1san_A
Length = 77
Score = 37.9 bits (88), Expect = 2e-04
Identities = 15/51 (29%), Positives = 24/51 (47%)
Query: 148 RKPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQV 198
R+ R + HQ LEK F Y R E+A+ + L+E +V++
Sbjct: 9 HARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKI 59
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB:
2ld5_A*
Length = 73
Score = 37.1 bits (86), Expect = 4e-04
Identities = 11/49 (22%), Positives = 21/49 (42%)
Query: 150 PKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQV 198
+ R+ R + QL LE+ + + R ++ LSE +V +
Sbjct: 5 LEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTI 53
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices
with the DNA binding helix- turn-helix motif, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 102
Score = 36.0 bits (82), Expect = 0.002
Identities = 10/45 (22%), Positives = 17/45 (37%)
Query: 150 PKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEA 194
RNR + L + ++R P RE L ++ +E
Sbjct: 4 GSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAEC 48
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding
domain, transcription, structural genomics, NPPSFA; NMR
{Mus musculus} SCOP: a.4.1.1
Length = 72
Score = 35.2 bits (81), Expect = 0.002
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 154 RNRTTFNSHQLNALEKVFER-THYPDAFVREELAKKVCLSEARVQV 198
++ + LEKVF T YPD + L+K++ S ++Q
Sbjct: 10 KDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQC 55
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain,
transcription factor, leucine zipper- containing factor,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
a.4.1.1
Length = 76
Score = 34.6 bits (79), Expect = 0.004
Identities = 7/49 (14%), Positives = 16/49 (32%), Gaps = 3/49 (6%)
Query: 150 PKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQV 198
+ +T QL L+ F + + ++L + L +
Sbjct: 4 GSSGKRKT---KEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQ 49
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.3 bits (86), Expect = 0.004
Identities = 40/269 (14%), Positives = 75/269 (27%), Gaps = 84/269 (31%)
Query: 21 AAWLVGHGSGEARDSISVVLNSSQGTVRLDNSVESLYLVSITGLLLALLVTSDW-----V 75
A L+G GE R + SQG V T + +A T W
Sbjct: 252 TAKLLGFTPGELRSYLKGATGHSQGLV--------------TAVAIAE--TDSWESFFVS 295
Query: 76 GNTVLEFVFWVWVDFTISAGNSSHLVWGNLS------QSQGGRGEDE-SKLTSKRHFWFA 128
+ +F++ G + + N S + E S + S +
Sbjct: 296 VRKAITVLFFI--------GVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQE 347
Query: 129 KLQMSIRVKSENDDYDYERRKPKPRRNRTT---FNSHQ----------LNALEKVFERTH 175
++Q + + P + N + L L +
Sbjct: 348 QVQDYVN----------KTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAK 397
Query: 176 YPDAFVREELAKKVCLSEARVQVSMMILFVRRPLALWVAEYKNPQFQSENRYFIKPQQHE 235
P + ++ SE +++ S L V P F S + P
Sbjct: 398 APSGLDQ----SRIPFSERKLKFSNRFLPVASP------------FHSH---LLVPASDL 438
Query: 236 II----NMKILFHRQTYVLSLAIFETFSA 260
I + F+ + + + +++TF
Sbjct: 439 INKDLVKNNVSFNAKD--IQIPVYDTFDG 465
Score = 32.7 bits (74), Expect = 0.13
Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 19/79 (24%)
Query: 7 WSVVLVGGWGRWG---WAAWLVGHGS-GE--ARDSISVVLNSSQGTVRLDNSVES-LYLV 59
G A GH S GE A S++ V+ S+ES + +V
Sbjct: 1739 MEKAAFEDLKSKGLIPADATFAGH-SLGEYAALASLADVM-----------SIESLVEVV 1786
Query: 60 SITGLLLALLVTSDWVGNT 78
G+ + + V D +G +
Sbjct: 1787 FYRGMTMQVAVPRDELGRS 1805
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.8 bits (84), Expect = 0.007
Identities = 53/330 (16%), Positives = 87/330 (26%), Gaps = 126/330 (38%)
Query: 9 VVLVG--GWGRWGWAA-----------------WL-VGHGSGEARDSISVVLN-----SS 43
V++ G G G+ A WL + + + ++
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN-CNSPETVLEMLQKLLYQIDP 211
Query: 44 QGTVRLDNS------VESLY-----LVSITGLLLALLVTSDWVGNTVLEFVFWVWVDFTI 92
T R D+S + S+ L+ LLV + V N W F +
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN-VQNA------KAWNAFNL 264
Query: 93 -----------------SAGNSSHLVWGNLSQSQGGRGEDESK-LTSKRHFWFAK----- 129
SA ++H+ L DE K L K
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHIS---LDHHSMTLTPDEVKSL-------LLKYLDCR 314
Query: 130 -------------LQMSI---RVKSENDDYDYERRKPKPRRNRTTFNSHQLNALEKVFER 173
++SI ++ +D + + +S LN LE R
Sbjct: 315 PQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS--LNVLEPAEYR 372
Query: 174 THYPDAFVREELAK---KVCLS----EARVQVSMMIL--FVRRPLALWVAEYKNPQFQSE 224
+ V A + LS + M+++ + L K P+ E
Sbjct: 373 KMFDRLSVFPPSAHIPTIL-LSLIWFDVIKSDVMVVVNKLHKYSLVE-----KQPK---E 423
Query: 225 NRYFIKPQQHEII--------NMKILFHRQ 246
+ I I N L HR
Sbjct: 424 STISI----PSIYLELKVKLENEYAL-HRS 448
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
a.4.1.1
Length = 64
Score = 32.1 bits (73), Expect = 0.019
Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 5/49 (10%)
Query: 151 KPRRNRTTFNSHQLNALEKVF-ERTHYPDAFVREELAKKVCLSEARVQV 198
N+ LEKVF T +PD E L+K++ +Q
Sbjct: 3 SGSSGTAQPNA----ILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQR 47
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1;
LMO2(LIM2)-LDB1(LID), chimera, fusion protein,
oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Length = 123
Score = 28.9 bits (64), Expect = 0.91
Identities = 4/20 (20%), Positives = 7/20 (35%)
Query: 147 RRKPKPRRNRTTFNSHQLNA 166
+ R T + Q +A
Sbjct: 97 EFGDEDERLITRLENTQFDA 116
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices
with the DNA binding helix- turn-helix motif, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 26.8 bits (58), Expect = 2.1
Identities = 9/54 (16%), Positives = 20/54 (37%), Gaps = 4/54 (7%)
Query: 149 KPKPRRNRTTFNSHQLNALEKVFER----THYPDAFVREELAKKVCLSEARVQV 198
++RT F+ L L+K ++ E +A ++ + V+
Sbjct: 5 SSGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRT 58
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit,
structural genomi protein structure initiative; 2.30A
{Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Length = 193
Score = 27.2 bits (61), Expect = 4.1
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 4/40 (10%)
Query: 163 QLNALE---KVFERTHYPDAFVREELA-KKVCLSEARVQV 198
Q L KV P+ V E+A KV E + ++
Sbjct: 90 QAYKLVEVVKVTPIDPLPENRVEREMALIKVRFDEDKQEI 129
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural
genomics, protein structure initiativ midwest center for
structural genomics; 2.15A {Escherichia coli}
Length = 120
Score = 26.4 bits (59), Expect = 4.8
Identities = 6/37 (16%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 160 NSHQLNALEKVFE--RTHYPDAFVREELAKKVCLSEA 194
N+ Q N +V + + +A ++ +S +
Sbjct: 2 NALQPNMRTRVCTVINNNIAHEWTLARIASELLMSPS 38
>4avm_A Bridging integrator 2; protein binding, plasma membrane, BAR
adaptor; 1.91A {Homo sapiens}
Length = 237
Score = 27.1 bits (59), Expect = 6.1
Identities = 9/44 (20%), Positives = 19/44 (43%)
Query: 219 PQFQSENRYFIKPQQHEIINMKILFHRQTYVLSLAIFETFSAVE 262
P + I N++ +F+R+ L+ ++E S +E
Sbjct: 188 PILYNSRIGCYVTIFQNISNLRDVFYREMSKLNHNLYEVMSKLE 231
>4f54_A Uncharacterized protein; PF13590 family protein, DUF4136,
structural genomics, joint for structural genomics,
JCSG; HET: MLY; 1.60A {Bacteroides thetaiotaomicron}
Length = 197
Score = 26.5 bits (57), Expect = 8.2
Identities = 8/49 (16%), Positives = 14/49 (28%), Gaps = 6/49 (12%)
Query: 2 WGNNFWSVVLVGGWGRWGWAAWLVGHGSGEARDSISVVLNSSQGTVRLD 50
+ W G WG W W + +V + S + +
Sbjct: 101 YTQPEWWWGYPGYWGPSYWGNWGGWYYPY------AVTYSYSTNSFITE 143
>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6,
pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A
{Pseudomonas fluorescens} SCOP: c.67.1.3
Length = 416
Score = 26.6 bits (59), Expect = 9.1
Identities = 13/48 (27%), Positives = 17/48 (35%), Gaps = 12/48 (25%)
Query: 7 WSVVLVGGWGRWGWA----------AWLVGHGSGE--ARDSISVVLNS 42
W L+ W GW A L+G GE D+ S+ L
Sbjct: 56 WGNGLIRSWNSAGWRDLSERLGNRLATLIGARDGEVVVTDTTSINLFK 103
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.134 0.425
Gapped
Lambda K H
0.267 0.0433 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,945,521
Number of extensions: 216136
Number of successful extensions: 408
Number of sequences better than 10.0: 1
Number of HSP's gapped: 389
Number of HSP's successfully gapped: 72
Length of query: 262
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 170
Effective length of database: 4,133,061
Effective search space: 702620370
Effective search space used: 702620370
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.1 bits)