RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9181
(262 letters)
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 77
Score = 66.0 bits (161), Expect = 7e-15
Identities = 16/59 (27%), Positives = 26/59 (44%)
Query: 140 NDDYDYERRKPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQV 198
N+ R+ R + HQ LEK F Y R E+A+ + L+E +V++
Sbjct: 1 NNPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKI 59
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 68
Score = 64.8 bits (158), Expect = 1e-14
Identities = 30/46 (65%), Positives = 35/46 (76%)
Query: 153 RRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQV 198
+RNRT+F Q+ ALEK FERTHYPD F RE LA K+ L EAR+QV
Sbjct: 2 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQV 47
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 65
Score = 60.3 bits (146), Expect = 5e-13
Identities = 29/48 (60%), Positives = 39/48 (81%)
Query: 151 KPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQV 198
K RR+RTTF++ QL+ LE+ FERT YPD + REELA++ L+EAR+QV
Sbjct: 1 KQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQV 48
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 56
Score = 60.2 bits (146), Expect = 5e-13
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 156 RTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQV 198
R T+ +Q LEK F Y R E+A + L+E ++++
Sbjct: 1 RQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKI 43
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo sapiens)
[TaxId: 9606]}
Length = 57
Score = 59.8 bits (145), Expect = 6e-13
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 153 RRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQV 198
+ + F++ Q LEK FE Y R+ LAK + LSE +V+
Sbjct: 1 KGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKT 46
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 66
Score = 59.1 bits (143), Expect = 2e-12
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 151 KPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQV 198
K R RT N QL+ L + PDA ++E+L + LS ++V
Sbjct: 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRV 49
>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1
(Flj21616) {Human (Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 58.9 bits (142), Expect = 3e-12
Identities = 13/49 (26%), Positives = 19/49 (38%)
Query: 153 RRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVSMM 201
R +R T+ L +E F YPD REE+A + +
Sbjct: 1 RGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLS 49
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 58
Score = 57.6 bits (139), Expect = 5e-12
Identities = 10/46 (21%), Positives = 22/46 (47%)
Query: 153 RRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQV 198
R+ R ++ QL LE+ + + R +++ LSE ++ +
Sbjct: 2 RKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITI 47
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 58
Score = 56.5 bits (136), Expect = 1e-11
Identities = 12/45 (26%), Positives = 23/45 (51%)
Query: 154 RNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQV 198
+ RTT + +ALE+ F P + +A+++ L + V+V
Sbjct: 1 KRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRV 45
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 67
Score = 56.9 bits (137), Expect = 1e-11
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 152 PRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQV 198
PRR RTTF S Q+ LE+ F + Y A +L+ K+ L A+V++
Sbjct: 1 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKI 47
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila melanogaster
[TaxId: 7227]}
Length = 53
Score = 56.0 bits (135), Expect = 1e-11
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 154 RNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQV 198
R RT F+S QL L++ F Y R++L+ ++ L+EA++++
Sbjct: 1 RPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKI 45
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 88
Score = 57.3 bits (138), Expect = 1e-11
Identities = 19/67 (28%), Positives = 28/67 (41%)
Query: 132 MSIRVKSENDDYDYERRKPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCL 191
M ++ E P RT F + QL LEK F Y R E+A + L
Sbjct: 7 MKVKRNPPKTAKVSEPGLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLEL 66
Query: 192 SEARVQV 198
+E +V++
Sbjct: 67 NETQVKI 73
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 67
Score = 55.8 bits (134), Expect = 2e-11
Identities = 12/53 (22%), Positives = 23/53 (43%)
Query: 146 ERRKPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQV 198
E +R RT+ + +LE +F + P +A ++ L + V+V
Sbjct: 2 ETLVQARKRKRTSIENRVRWSLETMFLKCPKPSLQQITHIANQLGLEKDVVRV 54
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 60
Score = 55.7 bits (134), Expect = 2e-11
Identities = 25/46 (54%), Positives = 29/46 (63%)
Query: 153 RRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQV 198
RR RT F S QL LE F+R YPD REE+A L+EARV+V
Sbjct: 2 RRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRV 47
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 50
Score = 54.9 bits (132), Expect = 3e-11
Identities = 8/43 (18%), Positives = 18/43 (41%)
Query: 156 RTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQV 198
R F Q L +F+ P ++ +++++ L + V
Sbjct: 2 RLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSN 44
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 57
Score = 54.1 bits (130), Expect = 8e-11
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 154 RNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQV 198
R RT F QL LEK F + +Y R ELA ++ L E+ ++V
Sbjct: 1 RYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKV 45
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 58
Score = 53.4 bits (128), Expect = 1e-10
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 153 RRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQV 198
R+ RT F + QL ALE+ F + Y R E + + L+E +V++
Sbjct: 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKI 46
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 53.4 bits (128), Expect = 1e-10
Identities = 10/46 (21%), Positives = 22/46 (47%)
Query: 156 RTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVSMM 201
RT+ ++ ALEK F P + +A+++ + + ++V
Sbjct: 2 RTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFS 47
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 53
Score = 53.0 bits (127), Expect = 2e-10
Identities = 12/43 (27%), Positives = 25/43 (58%)
Query: 156 RTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQV 198
+++ + LE+VF R ++ +EE+AKK ++ +V+V
Sbjct: 1 KSSISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRV 43
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 77
Score = 53.5 bits (128), Expect = 2e-10
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 150 PKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQV 198
K R+ R F Q LE+ F + Y A RE LA + L+ +V++
Sbjct: 7 NKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKI 55
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 68
Score = 52.2 bits (125), Expect = 5e-10
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 153 RRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQV 198
R+ R F+ Q+ LE+ F++ Y A RE LA + L+ +V++
Sbjct: 3 RKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKI 48
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 72
Score = 51.9 bits (124), Expect = 7e-10
Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 153 RRNRTTFNSHQLNALEKVFERT-HYPDAFVREELAKKVCLSEARVQV 198
T Q+ LE F + +PD +A + L+E + Q
Sbjct: 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQK 48
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5, LASS5
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 59
Score = 50.5 bits (121), Expect = 2e-09
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 154 RNRTTFNSHQLNALEKVFER-THYPDAFVREELAKKVCLSEARVQV 198
++ + LEKVF T YPD + L+K++ S ++Q
Sbjct: 3 KDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQC 48
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 62
Score = 49.3 bits (118), Expect = 4e-09
Identities = 8/49 (16%), Positives = 18/49 (36%), Gaps = 3/49 (6%)
Query: 153 RRNRTTFNSHQLNALEKVFERTH---YPDAFVREELAKKVCLSEARVQV 198
+ R H N + + YP ++++A + L+ +V
Sbjct: 3 KNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNN 51
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 49.6 bits (118), Expect = 6e-09
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 153 RRNRTTFNSHQLNALEKVFE---RTHYPDAFVREELAKKVCLSEARVQV 198
RR R FN L + F YP +EELAKK ++ ++V
Sbjct: 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSN 50
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 80
Score = 49.2 bits (117), Expect = 9e-09
Identities = 9/54 (16%), Positives = 18/54 (33%), Gaps = 4/54 (7%)
Query: 149 KPKPRRNRTTFNSHQLNALEKVFER----THYPDAFVREELAKKVCLSEARVQV 198
+R RT F + Q + ER D E+ + + +++
Sbjct: 14 GGTTKRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKI 67
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 71
Score = 48.9 bits (116), Expect = 1e-08
Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Query: 151 KPRRNRTTFNSHQLNALEKVFERT-HYPDAFVREELAKKVCLSEARVQV 198
R+RT + L L+ YPD L+ ++ L + +
Sbjct: 6 SGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIK 54
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6, LASS6
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 52
Score = 47.4 bits (113), Expect = 2e-08
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 161 SHQLNALEKVF-ERTHYPDAFVREELAKKVCLSEARVQV 198
+ LEKVF T +PD E L+K++ +Q
Sbjct: 2 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQR 40
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat
(Rattus rattus) [TaxId: 10117]}
Length = 78
Score = 47.5 bits (112), Expect = 3e-08
Identities = 9/44 (20%), Positives = 16/44 (36%)
Query: 156 RTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVS 199
R + L + +ER P RE L ++ +E +
Sbjct: 1 RFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGV 44
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 60
Score = 45.9 bits (109), Expect = 7e-08
Identities = 13/49 (26%), Positives = 18/49 (36%), Gaps = 5/49 (10%)
Query: 153 RRNRTTFNSHQLNALEKVFE---RTHYPDAFVREELAKKVCLSEARVQV 198
R +R F + LE F Y D E L K LS +++
Sbjct: 1 RGHR--FTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKN 47
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1,
ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 40.5 bits (94), Expect = 1e-05
Identities = 8/50 (16%), Positives = 17/50 (34%), Gaps = 3/50 (6%)
Query: 149 KPKPRRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQV 198
P+ + +T + QL L+ F + L + L+ +
Sbjct: 4 TPQKFKEKT---AEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDA 50
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez
{Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 35.5 bits (81), Expect = 6e-04
Identities = 6/49 (12%), Positives = 14/49 (28%)
Query: 153 RRNRTTFNSHQLNALEKVFERTHYPDAFVREELAKKVCLSEARVQVSMM 201
+ QL L+ F + + ++L + L +
Sbjct: 4 GSSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFG 52
>d2lefa_ a.21.1.1 (A:) Lymphoid enhancer-binding factor, LEF1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 86
Score = 24.8 bits (54), Expect = 4.6
Identities = 5/55 (9%), Positives = 16/55 (29%), Gaps = 12/55 (21%)
Query: 102 WGNLSQSQGGRGEDESKLTSKRHFWFAKLQMSIRVKSENDDYDYERRKPKPRRNR 156
W LS+ + + + ++ + H + K ++ +
Sbjct: 41 WHALSREEQAKYYELARKERQLH------------MQLYPGWSARDNYGKKKKRK 83
>d2dm9a1 d.81.4.1 (A:81-198) V-type ATP synthase subunit E
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 118
Score = 24.8 bits (54), Expect = 6.0
Identities = 9/28 (32%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 30 GEARDSIS-VVLNSSQGTVRLDNSVESL 56
GE D++ V++ + G +R+DN+ E+
Sbjct: 73 GETVDTMGGVIVETEDGRIRIDNTFEAR 100
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.134 0.425
Gapped
Lambda K H
0.267 0.0654 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 980,958
Number of extensions: 42243
Number of successful extensions: 129
Number of sequences better than 10.0: 1
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 34
Length of query: 262
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 178
Effective length of database: 1,254,276
Effective search space: 223261128
Effective search space used: 223261128
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.0 bits)