BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9182
(486 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 509 bits (1310), Expect = e-144, Method: Compositional matrix adjust.
Identities = 243/271 (89%), Positives = 259/271 (95%)
Query: 213 IENNWRMGKFLLQRINCRSENSKGVYCLQYDDHKIVSGLRDNTIKVWDRVSLQCIKVLTG 272
IE+NWR G+ LQRI+CRSE SKGVYCLQYDD KIVSGLRDNTIK+WD+ +L+C ++LTG
Sbjct: 112 IESNWRCGRHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTG 171
Query: 273 HTGSVLCLQYDERVIISGSSDSTVRVWDVNTGEMVNTLIHHCEAVLHLRFSNGMMVTCSK 332
HTGSVLCLQYDERVII+GSSDSTVRVWDVNTGEM+NTLIHHCEAVLHLRF+NGMMVTCSK
Sbjct: 172 HTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSK 231
Query: 333 DRSIAVWDMVSPNEITLRRVLVGHRAAVNVVDFDEKYIVSASGDRTIKVWNTSSCEFVRT 392
DRSIAVWDM SP +ITLRRVLVGHRAAVNVVDFD+KYIVSASGDRTIKVWNTS+CEFVRT
Sbjct: 232 DRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRT 291
Query: 393 LNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDAKRIVS 452
LNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD KRIVS
Sbjct: 292 LNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVS 351
Query: 453 GAYDGKIKVWNLVAALDPRAPTTTLCLRTLV 483
GAYDGKIKVW+LVAALDPRAP TLCLRTLV
Sbjct: 352 GAYDGKIKVWDLVAALDPRAPAGTLCLRTLV 382
Score = 149 bits (377), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 93/300 (31%), Positives = 145/300 (48%), Gaps = 57/300 (19%)
Query: 113 NFDEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRYRD 172
+D++ IVS D TIK+W+ ++ E R L GH + CLQY +R++++GSSD+T+R D
Sbjct: 140 QYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWD 199
Query: 173 -----------------------EFQIVSSSHDDTILIWDFLNYSETPIQXXXXXXXXXX 209
+V+ S D +I +WD + ++ ++
Sbjct: 200 VNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVG----- 254
Query: 210 XXXIENNWRMGKFLLQRINCRSENSKGVYCLQYDDHKIVSGLRDNTIKVWDRVSLQCIKV 269
+ V + +DD IVS D TIKVW+ + + ++
Sbjct: 255 -----------------------HRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRT 291
Query: 270 LTGHTGSVLCLQYDERVIISGSSDSTVRVWDVNTGEMVNTLIHHCEAVLHLRFSNGMMVT 329
L GH + CLQY +R+++SGSSD+T+R+WD+ G + L H E V +RF N +V+
Sbjct: 292 LNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVS 351
Query: 330 CSKDRSIAVWDMVS------PNEITLRRVLVGHRAAVNVVDFDEKYIVSASGDRTIKVWN 383
+ D I VWD+V+ P R LV H V + FDE IVS+S D TI +W+
Sbjct: 352 GAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWD 411
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 183 bits (464), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 120/390 (30%), Positives = 194/390 (49%), Gaps = 40/390 (10%)
Query: 94 HINTYLKPMLQRDFISLLPNFDEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQ 153
H+ ++P QRDFISLLP Y++S + + + +C + R L L
Sbjct: 5 HMMQVIEPQFQRDFISLLPKELALYVLSFLEPKDL-LQAAQTCRYWRILAEDN-----LL 58
Query: 154 YRDRLVVSGSSDNT-IRYRDEFQIVSSSHDDTILIWDFLNYSETPIQXXXXXXXXXXXXX 212
+R++ G + I+ R + + +P +
Sbjct: 59 WREKCKEEGIDEPLHIKRRKVIKP---------------GFIHSPWKSAYIRQHR----- 98
Query: 213 IENNWRMGKFLLQRINCRSENSKGVYCLQYDDHKIVSGLRDNTIKVWDRVSLQCIKVLTG 272
I+ NWR G+ ++ + + + CLQ+ ++IVSG DNT+KVW V+ +C++ L G
Sbjct: 99 IDTNWRRGELKSPKV-LKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVG 157
Query: 273 HTGSVLCLQYDERVIISGSSDSTVRVWDVNTGEMVNTLIHHCEAVLHLRFSNGMMVTCSK 332
HTG V Q + +IISGS+D T++VW+ TGE ++TL H V + +V+ S+
Sbjct: 158 HTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSR 217
Query: 333 DRSIAVWDMVSPNEITLRRVLVGHRAAVNVVDFDEKYIVSASGDRTIKVWNTSSCEFVRT 392
D ++ VWD+ + + VL+GH AAV V +D + +VS + D +KVW+ + + T
Sbjct: 218 DATLRVWDIETGQCL---HVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHT 274
Query: 393 LNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDAKRIVS 452
L GH + LQ+ VVSGS D +IR+WD+E G C+ L GH+ L + +VS
Sbjct: 275 LQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVS 334
Query: 453 GAYDGKIKVWNLVAALDPRAPTTTLCLRTL 482
G D +K+W++ T CL+TL
Sbjct: 335 GNADSTVKIWDI---------KTGQCLQTL 355
Score = 173 bits (438), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 102/338 (30%), Positives = 174/338 (51%), Gaps = 55/338 (16%)
Query: 131 WNTSSCEFVRTLNGHK-RGIACLQYRDRLVVSGSSDNTIRYRDEFQIVSSSHDDTILIWD 189
W + + L GH I CLQ+ +VSGS DNT++ +W
Sbjct: 103 WRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLK-----------------VWS 145
Query: 190 FLNYSETPIQXXXXXXXXXXXXXIENNWRMGKFLLQRINCRSENSKGVYCLQYDDHKIVS 249
+ GK L + ++ GV+ Q D+ I+S
Sbjct: 146 AVT---------------------------GKCLRTLVG----HTGGVWSSQMRDNIIIS 174
Query: 250 GLRDNTIKVWDRVSLQCIKVLTGHTGSVLCLQYDERVIISGSSDSTVRVWDVNTGEMVNT 309
G D T+KVW+ + +CI L GHT +V C+ E+ ++SGS D+T+RVWD+ TG+ ++
Sbjct: 175 GSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHV 234
Query: 310 LIHHCEAVLHLRFSNGMMVTCSKDRSIAVWDMVSPNEITLRRVLVGHRAAVNVVDFDEKY 369
L+ H AV +++ +V+ + D + VWD P T L GH V + FD +
Sbjct: 235 LMGHVAAVRCVQYDGRRVVSGAYDFMVKVWD---PETETCLHTLQGHTNRVYSLQFDGIH 291
Query: 370 IVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGAC 429
+VS S D +I+VW+ + + TL GH+ + ++ +D ++VSG++D+T+++WDI+ G C
Sbjct: 292 VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQC 351
Query: 430 LRVLEG---HEELVRCIRFDAKRIVSGAYDGKIKVWNL 464
L+ L+G H+ V C++F+ +++ + DG +K+W+L
Sbjct: 352 LQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDL 389
Score = 167 bits (422), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 102/331 (30%), Positives = 168/331 (50%), Gaps = 54/331 (16%)
Query: 106 DFISLLPNFDEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYRDRLVVSGSSD 165
D + F IVS S D T+KVW+ + + +RTL GH G+ Q RD +++SGS+D
Sbjct: 119 DHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTD 178
Query: 166 NTIRYRDEFQIVSSSHDDTILIWDFLNYSETPIQXXXXXXXXXXXXXIENNWRMGKFLLQ 225
T++ +W+ +ET +
Sbjct: 179 RTLK-----------------VWN----AETG---------------------------E 190
Query: 226 RINCRSENSKGVYCLQYDDHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVLCLQYDER 285
I+ ++ V C+ + ++VSG RD T++VWD + QC+ VL GH +V C+QYD R
Sbjct: 191 CIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGR 250
Query: 286 VIISGSSDSTVRVWDVNTGEMVNTLIHHCEAVLHLRFSNGMMVTCSKDRSIAVWDMVSPN 345
++SG+ D V+VWD T ++TL H V L+F +V+ S D SI VWD+ + N
Sbjct: 251 RVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGN 310
Query: 346 EITLRRVLVGHRAAVNVVDFDEKYIVSASGDRTIKVWNTSSCEFVRTLNG---HKRGIAC 402
I L GH++ + ++ + +VS + D T+K+W+ + + ++TL G H+ + C
Sbjct: 311 CI---HTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTC 367
Query: 403 LQYRDRLVVSGSSDNTIRLWDIECGACLRVL 433
LQ+ V++ S D T++LWD++ G +R L
Sbjct: 368 LQFNKNFVITSSDDGTVKLWDLKTGEFIRNL 398
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 108/233 (46%), Gaps = 39/233 (16%)
Query: 116 EKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRY----- 170
+ I+S S DRT+KVWN + E + TL GH + C+ ++ VVSGS D T+R
Sbjct: 169 DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIET 228
Query: 171 ------------------RDEFQIVSSSHDDTILIWDFLNYSETPIQXXXXXXXXXXXXX 212
D ++VS ++D + +WD +ET +
Sbjct: 229 GQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWD--PETETCLHTLQGHTNRVYSLQ 286
Query: 213 IENNWRMGKFLLQRI--------NC---RSENSKGVYCLQYDDHKIVSGLRDNTIKVWDR 261
+ + L I NC + + ++ D+ +VSG D+T+K+WD
Sbjct: 287 FDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDI 346
Query: 262 VSLQCIKVLTG---HTGSVLCLQYDERVIISGSSDSTVRVWDVNTGEMVNTLI 311
+ QC++ L G H +V CLQ+++ +I+ S D TV++WD+ TGE + L+
Sbjct: 347 KTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLV 399
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 89/206 (43%), Gaps = 41/206 (19%)
Query: 113 NFDEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRYRD 172
+ EK +VS S D T++VW+ + + + L GH + C+QY R VVSG+ D ++ D
Sbjct: 206 HLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWD 265
Query: 173 E-----------------------FQIVSSSHDDTILIWDFLN----YSETPIQXXXXXX 205
+VS S D +I +WD ++ T Q
Sbjct: 266 PETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGM 325
Query: 206 XXXXXXXIENN-------W--RMGKFLLQRINCRSENSKGVYCLQYDDHKIVSGLRDNTI 256
+ N W + G+ LQ + +++ V CLQ++ + +++ D T+
Sbjct: 326 ELKDNILVSGNADSTVKIWDIKTGQ-CLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTV 384
Query: 257 KVWDRVSLQCIKVL----TGHTGSVL 278
K+WD + + I+ L +G +G V+
Sbjct: 385 KLWDLKTGEFIRNLVTLESGGSGGVV 410
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 147 bits (370), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 112/361 (31%), Positives = 182/361 (50%), Gaps = 68/361 (18%)
Query: 115 DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRYRDEF 174
D + I SAS D+T+K+WN + + ++TL GH SS N + +R +
Sbjct: 232 DGQTIASASDDKTVKLWN-RNGQLLQTLTGHS----------------SSVNGVAFRPDG 274
Query: 175 QIVSSSHDD-TILIWDFLNYSETPIQXXXXXXXXXXXXXIENNWRMGKFLLQRINCRSEN 233
Q ++S+ DD T+ +W+ R G+ LLQ + S +
Sbjct: 275 QTIASASDDKTVKLWN----------------------------RNGQ-LLQTLTGHSSS 305
Query: 234 SKGVYCLQYDDHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVLCLQY--DERVIISGS 291
GV D I S D T+K+W+R + Q ++ LTGH+ SV + + D + I S S
Sbjct: 306 VWGV-AFSPDGQTIASASDDKTVKLWNR-NGQHLQTLTGHSSSVWGVAFSPDGQTIASAS 363
Query: 292 SDSTVRVWDVNTGEMVNTLIHHCEAVLHLRFS-NGMMV-TCSKDRSIAVWDMVSPNEITL 349
D TV++W+ N G+++ TL H +V + FS +G + + S D+++ +W+ L
Sbjct: 364 DDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR----NGQL 418
Query: 350 RRVLVGHRAAVNVVDF--DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHK---RGIACLQ 404
+ L GH ++V V F D++ I SAS D+T+K+WN + + ++TL GH RG+A
Sbjct: 419 LQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVA-FS 476
Query: 405 YRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DAKRIVSGAYDGKIKVW 462
+ + S S D T++LW+ G L+ L GH VR + F D + I S + D +K+W
Sbjct: 477 PDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 535
Query: 463 N 463
N
Sbjct: 536 N 536
Score = 144 bits (364), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 106/359 (29%), Positives = 176/359 (49%), Gaps = 64/359 (17%)
Query: 115 DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRYRDEF 174
D + I SAS D+T+K+WN + + ++TL GH + + + D
Sbjct: 27 DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFS---------------PDGQ 70
Query: 175 QIVSSSHDDTILIWDFLNYSETPIQXXXXXXXXXXXXXIENNWRMGKFLLQRINCRSENS 234
I S+S D T+ +W+ R G+ LLQ + S +
Sbjct: 71 TIASASDDKTVKLWN----------------------------RNGQ-LLQTLTGHSSSV 101
Query: 235 KGVYCLQYDDHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVLCLQY--DERVIISGSS 292
+GV D I S D T+K+W+R + Q ++ LTGH+ SV + + D + I S S
Sbjct: 102 RGV-AFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASD 159
Query: 293 DSTVRVWDVNTGEMVNTLIHHCEAVLHLRFS-NGMMV-TCSKDRSIAVWDMVSPNEITLR 350
D TV++W+ N G+++ TL H +V + FS +G + + S D+++ +W+ L
Sbjct: 160 DKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR----NGQLL 214
Query: 351 RVLVGHRAAVNVVDF--DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYR-- 406
+ L GH ++V V F D + I SAS D+T+K+WN + + ++TL GH + + +R
Sbjct: 215 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVNGVAFRPD 273
Query: 407 DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DAKRIVSGAYDGKIKVWN 463
+ + S S D T++LW+ G L+ L GH V + F D + I S + D +K+WN
Sbjct: 274 GQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 331
Score = 142 bits (357), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 106/359 (29%), Positives = 175/359 (48%), Gaps = 64/359 (17%)
Query: 115 DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRYRDEF 174
D + I SAS D+T+K+WN + + ++TL GH + + + D
Sbjct: 68 DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFS---------------PDGQ 111
Query: 175 QIVSSSHDDTILIWDFLNYSETPIQXXXXXXXXXXXXXIENNWRMGKFLLQRINCRSENS 234
I S+S D T+ +W+ R G+ LLQ + S +
Sbjct: 112 TIASASDDKTVKLWN----------------------------RNGQ-LLQTLTGHSSSV 142
Query: 235 KGVYCLQYDDHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVLCLQY--DERVIISGSS 292
GV D I S D T+K+W+R + Q ++ LTGH+ SV + + D + I S S
Sbjct: 143 WGV-AFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASD 200
Query: 293 DSTVRVWDVNTGEMVNTLIHHCEAVLHLRFS-NGMMV-TCSKDRSIAVWDMVSPNEITLR 350
D TV++W+ N G+++ TL H +V + FS +G + + S D+++ +W+ L
Sbjct: 201 DKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR----NGQLL 255
Query: 351 RVLVGHRAAVNVVDF--DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYR-- 406
+ L GH ++VN V F D + I SAS D+T+K+WN + + ++TL GH + + +
Sbjct: 256 QTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPD 314
Query: 407 DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DAKRIVSGAYDGKIKVWN 463
+ + S S D T++LW+ G L+ L GH V + F D + I S + D +K+WN
Sbjct: 315 GQTIASASDDKTVKLWN-RNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 372
Score = 126 bits (316), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 83/255 (32%), Positives = 137/255 (53%), Gaps = 19/255 (7%)
Query: 219 MGKFLLQRINCRSENSKGVYCLQYDDHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVL 278
MG R+ S + +GV D I S D T+K+W+R + Q ++ LTGH+ SV
Sbjct: 4 MGVKERNRLEAHSSSVRGV-AFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVW 61
Query: 279 CLQY--DERVIISGSSDSTVRVWDVNTGEMVNTLIHHCEAVLHLRFS-NGMMV-TCSKDR 334
+ + D + I S S D TV++W+ N G+++ TL H +V + FS +G + + S D+
Sbjct: 62 GVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDK 120
Query: 335 SIAVWDMVSPNEITLRRVLVGHRAAVNVVDF--DEKYIVSASGDRTIKVWNTSSCEFVRT 392
++ +W+ L + L GH ++V V F D + I SAS D+T+K+WN + + ++T
Sbjct: 121 TVKLWNR----NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQT 175
Query: 393 LNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DAK 448
L GH + + + + + S S D T++LW+ G L+ L GH VR + F D +
Sbjct: 176 LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQ 234
Query: 449 RIVSGAYDGKIKVWN 463
I S + D +K+WN
Sbjct: 235 TIASASDDKTVKLWN 249
Score = 105 bits (261), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 82/275 (29%), Positives = 133/275 (48%), Gaps = 58/275 (21%)
Query: 115 DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRYRDEF 174
D + I SAS D+T+K+WN + + ++TL GH + + + D
Sbjct: 355 DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSP---------------DGQ 398
Query: 175 QIVSSSHDDTILIWDFLNYSETPIQXXXXXXXXXXXXXIENNWRMGKFLLQRINCRSENS 234
I S+S D T+ +W+ R G+ LLQ + S +
Sbjct: 399 TIASASDDKTVKLWN----------------------------RNGQ-LLQTLTGHSSSV 429
Query: 235 KGVYCLQYDDHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVLCLQY--DERVIISGSS 292
GV DD I S D T+K+W+R + Q ++ LTGH+ SV + + D + I S S
Sbjct: 430 WGV-AFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASD 487
Query: 293 DSTVRVWDVNTGEMVNTLIHHCEAVLHLRFS-NGMMV-TCSKDRSIAVWDMVSPNEITLR 350
D TV++W+ N G+++ TL H +V + FS +G + + S D+++ +W+ L
Sbjct: 488 DKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR----NGQLL 542
Query: 351 RVLVGHRAAVNVVDF--DEKYIVSASGDRTIKVWN 383
+ L GH ++V V F D + I SAS D+T+K+WN
Sbjct: 543 QTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 137 bits (345), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 88/278 (31%), Positives = 137/278 (49%), Gaps = 27/278 (9%)
Query: 213 IENNWRMGKFLLQRINCRSENSKGVYCLQYDDHKIVSGLRDNTIKVWDRVSLQCIKVLTG 272
I NW KF+ QR R + + CLQ++D+ +++G D I+V+D ++ + + L+G
Sbjct: 101 ILKNWYNPKFVPQRTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSG 160
Query: 273 HTGSVLCLQYDE-RVIISGSSDSTVRVWDVNTGEMVNTLIHHCEAVLHL---RFSN-GMM 327
H G V L+Y +++SGS+D TVRVWD+ G + H V L + N +
Sbjct: 161 HDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYI 220
Query: 328 VTCSKDRSIAVWDMVSPNEIT--------------------LRRVLVGHRAAVNVVDFDE 367
VT S+D ++ VW + + + VL GH A+V V
Sbjct: 221 VTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHG 280
Query: 368 KYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIE 425
+VS S D T+ VW+ + + + L+GH I Y + +S S D TIR+WD+E
Sbjct: 281 NIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLE 340
Query: 426 CGACLRVLEGHEELVRCIRFDAKRIVSGAYDGKIKVWN 463
G + L+GH LV +R K +VS A DG I+ W+
Sbjct: 341 NGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWD 378
Score = 112 bits (280), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 82/307 (26%), Positives = 145/307 (47%), Gaps = 44/307 (14%)
Query: 68 FDKWSEQDQI--DFVENLLSRMCHYQHGHINTYLKPMLQRDFISLLP--NFDEKYIVSAS 123
+ K S+QD++ F+EN+ Y + + L+ S++ F++ Y+++ +
Sbjct: 82 YPKLSQQDRLRLSFLENIFILKNWYNPKFVPQ--RTTLRGHMTSVITCLQFEDNYVITGA 139
Query: 124 GDRTIKVWNTSSCEFVRTLNGHKRGIACLQY-RDRLVVSGSSDNTIR------------- 169
D+ I+V+++ + +F+ L+GH G+ L+Y ++VSGS+D T+R
Sbjct: 140 DDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVF 199
Query: 170 --------------YRDEFQIVSSSHDDTILIWDFLNYSETPIQXXXXXXXXXXXXXIEN 215
Y++ IV+ S D+T+ +W S P EN
Sbjct: 200 EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEEN 259
Query: 216 NWRMGKFLLQRINCRSENSKGVYCLQYDDHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTG 275
+ +G + R+ + G + +VSG DNT+ VWD ++C+ +L+GHT
Sbjct: 260 PYFVGVLRGHMASVRTVSGHG--------NIVVSGSYDNTLIVWDVAQMKCLYILSGHTD 311
Query: 276 SVLCLQYDE--RVIISGSSDSTVRVWDVNTGEMVNTLIHHCEAVLHLRFSNGMMVTCSKD 333
+ YD + IS S D+T+R+WD+ GE++ TL H V LR S+ +V+ + D
Sbjct: 312 RIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAAD 371
Query: 334 RSIAVWD 340
SI WD
Sbjct: 372 GSIRGWD 378
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 77/128 (60%), Gaps = 6/128 (4%)
Query: 343 SPNEITLRRVLVGHRAAV-NVVDFDEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIA 401
+P + R L GH +V + F++ Y+++ + D+ I+V+++ + +F+ L+GH G+
Sbjct: 107 NPKFVPQRTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVW 166
Query: 402 CLQY-RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF----DAKRIVSGAYD 456
L+Y ++VSGS+D T+R+WDI+ G C V EGH VRC+ + K IV+G+ D
Sbjct: 167 ALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRD 226
Query: 457 GKIKVWNL 464
+ VW L
Sbjct: 227 NTLHVWKL 234
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 137 bits (344), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 88/278 (31%), Positives = 136/278 (48%), Gaps = 27/278 (9%)
Query: 213 IENNWRMGKFLLQRINCRSENSKGVYCLQYDDHKIVSGLRDNTIKVWDRVSLQCIKVLTG 272
I NW KF+ QR R + + CLQ++D+ +++G D I+V+D ++ + + L+G
Sbjct: 101 ILKNWYNPKFVPQRTTLRGHXTSVITCLQFEDNYVITGADDKXIRVYDSINKKFLLQLSG 160
Query: 273 HTGSVLCLQYDE-RVIISGSSDSTVRVWDVNTGEMVNTLIHHCEAVLHL---RFSN-GMM 327
H G V L+Y +++SGS+D TVRVWD+ G + H V L + N +
Sbjct: 161 HDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYI 220
Query: 328 VTCSKDRSIAVWDMVSPNEIT--------------------LRRVLVGHRAAVNVVDFDE 367
VT S+D ++ VW + + + VL GH A+V V
Sbjct: 221 VTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHG 280
Query: 368 KYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIE 425
+VS S D T+ VW+ + + + L+GH I Y + +S S D TIR+WD+E
Sbjct: 281 NIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLE 340
Query: 426 CGACLRVLEGHEELVRCIRFDAKRIVSGAYDGKIKVWN 463
G L+GH LV +R K +VS A DG I+ W+
Sbjct: 341 NGELXYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWD 378
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/307 (26%), Positives = 143/307 (46%), Gaps = 44/307 (14%)
Query: 68 FDKWSEQDQI--DFVENLLSRMCHYQHGHINTYLKPMLQRDFISLLP--NFDEKYIVSAS 123
+ K S+QD++ F+EN+ Y + + L+ S++ F++ Y+++ +
Sbjct: 82 YPKLSQQDRLRLSFLENIFILKNWYNPKFVPQ--RTTLRGHXTSVITCLQFEDNYVITGA 139
Query: 124 GDRTIKVWNTSSCEFVRTLNGHKRGIACLQY-RDRLVVSGSSDNTIR------------- 169
D+ I+V+++ + +F+ L+GH G+ L+Y ++VSGS+D T+R
Sbjct: 140 DDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVF 199
Query: 170 --------------YRDEFQIVSSSHDDTILIWDFLNYSETPIQXXXXXXXXXXXXXIEN 215
Y++ IV+ S D+T+ +W S P EN
Sbjct: 200 EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEEN 259
Query: 216 NWRMGKFLLQRINCRSENSKGVYCLQYDDHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTG 275
+ +G + R+ + G + +VSG DNT+ VWD +C+ +L+GHT
Sbjct: 260 PYFVGVLRGHXASVRTVSGHG--------NIVVSGSYDNTLIVWDVAQXKCLYILSGHTD 311
Query: 276 SVLCLQYDE--RVIISGSSDSTVRVWDVNTGEMVNTLIHHCEAVLHLRFSNGMMVTCSKD 333
+ YD + IS S D+T+R+WD+ GE+ TL H V LR S+ +V+ + D
Sbjct: 312 RIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLLRLSDKFLVSAAAD 371
Query: 334 RSIAVWD 340
SI WD
Sbjct: 372 GSIRGWD 378
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 77/128 (60%), Gaps = 6/128 (4%)
Query: 343 SPNEITLRRVLVGHRAAV-NVVDFDEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIA 401
+P + R L GH +V + F++ Y+++ + D+ I+V+++ + +F+ L+GH G+
Sbjct: 107 NPKFVPQRTTLRGHXTSVITCLQFEDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVW 166
Query: 402 CLQY-RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF----DAKRIVSGAYD 456
L+Y ++VSGS+D T+R+WDI+ G C V EGH VRC+ + K IV+G+ D
Sbjct: 167 ALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRD 226
Query: 457 GKIKVWNL 464
+ VW L
Sbjct: 227 NTLHVWKL 234
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 120 bits (300), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 127/235 (54%), Gaps = 17/235 (7%)
Query: 243 DDHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVLCLQYDER--VIISGSSDSTVRVWD 300
D + +VS D T+K+WD S +C+K L GH+ V C ++ + +I+SGS D +VR+WD
Sbjct: 98 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 157
Query: 301 VNTGEMVNTLIHHCEAV--LHLRFSNGMMVTCSKDRSIAVWDMVSPNEITLRRVLVGHRA 358
V TG+ + TL H + V +H ++V+ S D +WD S L+ ++
Sbjct: 158 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ--CLKTLIDDDNP 215
Query: 359 AVNVVDF--DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYR-----DRLVV 411
V+ V F + KYI++A+ D T+K+W+ S + ++T GHK C+ + +V
Sbjct: 216 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 275
Query: 412 SGSSDNTIRLWDIECGACLRVLEGHEELVRCIR-FDAKRIVSGAY---DGKIKVW 462
SGS DN + +W+++ ++ L+GH ++V + I++ A D IK+W
Sbjct: 276 SGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 330
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 101/183 (55%), Gaps = 20/183 (10%)
Query: 309 TLIHHCEAVLHLRFS-NG-MMVTCSKDRSIAVWDMVSPNEITLRRVLVGHRAAVNVVDF- 365
TL H +AV ++FS NG + + S D+ I +W + + + GH+ ++ V +
Sbjct: 40 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEKTISGHKLGISDVAWS 96
Query: 366 -DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLW 422
D +VSAS D+T+K+W+ SS + ++TL GH + C + + L+VSGS D ++R+W
Sbjct: 97 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 156
Query: 423 DIECGACLRVLEGHEELVRCIRF--DAKRIVSGAYDGKIKVWNLVAALDPRAPTTTLCLR 480
D++ G CL+ L H + V + F D IVS +YDG ++W+ + CL+
Sbjct: 157 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG---------QCLK 207
Query: 481 TLV 483
TL+
Sbjct: 208 TLI 210
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 122/232 (52%), Gaps = 17/232 (7%)
Query: 247 IVSGLRDNTIKVWDRVSLQCIKVLTGHTGSV--LCLQYDERVIISGSSDSTVRVWDVNTG 304
+ S D IK+W + K ++GH + + D +++S S D T+++WDV++G
Sbjct: 60 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 119
Query: 305 EMVNTLIHHCEAVLHLRFS--NGMMVTCSKDRSIAVWDMVSPNEITLRRVLVGHRAAVNV 362
+ + TL H V F+ + ++V+ S D S+ +WD+ + + + L H V+
Sbjct: 120 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL---KTLPAHSDPVSA 176
Query: 363 VDF--DEKYIVSASGDRTIKVWNTSSCEFVRTL-NGHKRGIACLQY--RDRLVVSGSSDN 417
V F D IVS+S D ++W+T+S + ++TL + ++ +++ + +++ + DN
Sbjct: 177 VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 236
Query: 418 TIRLWDIECGACLRVLEGHEELVRCIRFD-----AKRIVSGAYDGKIKVWNL 464
T++LWD G CL+ GH+ CI + K IVSG+ D + +WNL
Sbjct: 237 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 288
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 85/147 (57%), Gaps = 16/147 (10%)
Query: 342 VSPNEITLRRVLVGHRAAVNVVDF--DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRG 399
V PN L+ L GH AV+ V F + +++ S+S D+ IK+W +F +T++GHK G
Sbjct: 31 VKPN-YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG 89
Query: 400 IACLQYRD--RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDAKR--IVSGAY 455
I+ + + L+VS S D T+++WD+ G CL+ L+GH V C F+ + IVSG++
Sbjct: 90 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 149
Query: 456 DGKIKVWNLVAALDPRAPTTTLCLRTL 482
D +++W++ T CL+TL
Sbjct: 150 DESVRIWDV---------KTGKCLKTL 167
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 106/238 (44%), Gaps = 64/238 (26%)
Query: 115 DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRY-- 170
D +VSAS D+T+K+W+ SS + ++TL GH + C + + L+VSGS D ++R
Sbjct: 98 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 157
Query: 171 -----------------------RDEFQIVSSSHDDTILIWDFLNYSETPIQXXXXXXXX 207
RD IVSSS+D IWD +
Sbjct: 158 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS--------------- 202
Query: 208 XXXXXIENNWRMGKFLLQRINCRSENSKGVYCLQYDDHK--IVSGLRDNTIKVWDRVSLQ 265
G+ L I+ +++ V +++ + I++ DNT+K+WD +
Sbjct: 203 ------------GQCLKTLID---DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK 247
Query: 266 CIKVLTGHTGSVLCLQYDERV-----IISGSSDSTVRVWDVNTGEMVNTLIHHCEAVL 318
C+K TGH C+ + V I+SGS D+ V +W++ T E+V L H + V+
Sbjct: 248 CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVI 305
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 12/80 (15%)
Query: 99 LKPMLQRD-----FISLLPNFDEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQ 153
LK ++ D F+ PN KYI++A+ D T+K+W+ S + ++T GHK C+
Sbjct: 206 LKTLIDDDNPPVSFVKFSPN--GKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 263
Query: 154 YR-----DRLVVSGSSDNTI 168
+ +VSGS DN +
Sbjct: 264 ANFSVTGGKWIVSGSEDNLV 283
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 42/197 (21%), Positives = 83/197 (42%), Gaps = 56/197 (28%)
Query: 113 NFDEKYIVSASGDRTIKVWNTSSCEFVRTL-NGHKRGIACLQYRDRLVVSGSSDNTIRYR 171
N D IVS+S D ++W+T+S + ++TL + ++ +++ +Y
Sbjct: 180 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG----------KY- 228
Query: 172 DEFQIVSSSHDDTILIWDFLNYSETPIQXXXXXXXXXXXXXIENNWRMGKFLLQRINCRS 231
I++++ D+T+ +WD+ GK L ++
Sbjct: 229 ----ILAATLDNTLKLWDY---------------------------SKGKCLKTYTGHKN 257
Query: 232 ENSKGVYCLQYD-----DHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVL--CLQYDE 284
E YC+ + IVSG DN + +W+ + + ++ L GHT V+ E
Sbjct: 258 EK----YCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 313
Query: 285 RVIISGS--SDSTVRVW 299
+I S + +D T+++W
Sbjct: 314 NIIASAALENDKTIKLW 330
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 120 bits (300), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 127/235 (54%), Gaps = 17/235 (7%)
Query: 243 DDHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVLCLQYDER--VIISGSSDSTVRVWD 300
D + +VS D T+K+WD S +C+K L GH+ V C ++ + +I+SGS D +VR+WD
Sbjct: 100 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 159
Query: 301 VNTGEMVNTLIHHCEAV--LHLRFSNGMMVTCSKDRSIAVWDMVSPNEITLRRVLVGHRA 358
V TG+ + TL H + V +H ++V+ S D +WD S L+ ++
Sbjct: 160 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ--CLKTLIDDDNP 217
Query: 359 AVNVVDF--DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYR-----DRLVV 411
V+ V F + KYI++A+ D T+K+W+ S + ++T GHK C+ + +V
Sbjct: 218 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 277
Query: 412 SGSSDNTIRLWDIECGACLRVLEGHEELVRCIR-FDAKRIVSGAY---DGKIKVW 462
SGS DN + +W+++ ++ L+GH ++V + I++ A D IK+W
Sbjct: 278 SGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 332
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 101/183 (55%), Gaps = 20/183 (10%)
Query: 309 TLIHHCEAVLHLRFS-NG-MMVTCSKDRSIAVWDMVSPNEITLRRVLVGHRAAVNVVDF- 365
TL H +AV ++FS NG + + S D+ I +W + + + GH+ ++ V +
Sbjct: 42 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEKTISGHKLGISDVAWS 98
Query: 366 -DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLW 422
D +VSAS D+T+K+W+ SS + ++TL GH + C + + L+VSGS D ++R+W
Sbjct: 99 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 158
Query: 423 DIECGACLRVLEGHEELVRCIRF--DAKRIVSGAYDGKIKVWNLVAALDPRAPTTTLCLR 480
D++ G CL+ L H + V + F D IVS +YDG ++W+ + CL+
Sbjct: 159 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG---------QCLK 209
Query: 481 TLV 483
TL+
Sbjct: 210 TLI 212
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 122/232 (52%), Gaps = 17/232 (7%)
Query: 247 IVSGLRDNTIKVWDRVSLQCIKVLTGHTGSV--LCLQYDERVIISGSSDSTVRVWDVNTG 304
+ S D IK+W + K ++GH + + D +++S S D T+++WDV++G
Sbjct: 62 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 121
Query: 305 EMVNTLIHHCEAVLHLRFS--NGMMVTCSKDRSIAVWDMVSPNEITLRRVLVGHRAAVNV 362
+ + TL H V F+ + ++V+ S D S+ +WD+ + + + L H V+
Sbjct: 122 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL---KTLPAHSDPVSA 178
Query: 363 VDF--DEKYIVSASGDRTIKVWNTSSCEFVRTL-NGHKRGIACLQY--RDRLVVSGSSDN 417
V F D IVS+S D ++W+T+S + ++TL + ++ +++ + +++ + DN
Sbjct: 179 VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 238
Query: 418 TIRLWDIECGACLRVLEGHEELVRCIRFD-----AKRIVSGAYDGKIKVWNL 464
T++LWD G CL+ GH+ CI + K IVSG+ D + +WNL
Sbjct: 239 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 290
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 85/147 (57%), Gaps = 16/147 (10%)
Query: 342 VSPNEITLRRVLVGHRAAVNVVDF--DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRG 399
V PN L+ L GH AV+ V F + +++ S+S D+ IK+W +F +T++GHK G
Sbjct: 33 VKPN-YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG 91
Query: 400 IACLQYRD--RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDAKR--IVSGAY 455
I+ + + L+VS S D T+++WD+ G CL+ L+GH V C F+ + IVSG++
Sbjct: 92 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 151
Query: 456 DGKIKVWNLVAALDPRAPTTTLCLRTL 482
D +++W++ T CL+TL
Sbjct: 152 DESVRIWDV---------KTGKCLKTL 169
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 106/238 (44%), Gaps = 64/238 (26%)
Query: 115 DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRY-- 170
D +VSAS D+T+K+W+ SS + ++TL GH + C + + L+VSGS D ++R
Sbjct: 100 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 159
Query: 171 -----------------------RDEFQIVSSSHDDTILIWDFLNYSETPIQXXXXXXXX 207
RD IVSSS+D IWD +
Sbjct: 160 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS--------------- 204
Query: 208 XXXXXIENNWRMGKFLLQRINCRSENSKGVYCLQYDDHK--IVSGLRDNTIKVWDRVSLQ 265
G+ L I+ +++ V +++ + I++ DNT+K+WD +
Sbjct: 205 ------------GQCLKTLID---DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK 249
Query: 266 CIKVLTGHTGSVLCLQYDERV-----IISGSSDSTVRVWDVNTGEMVNTLIHHCEAVL 318
C+K TGH C+ + V I+SGS D+ V +W++ T E+V L H + V+
Sbjct: 250 CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVI 307
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 12/80 (15%)
Query: 99 LKPMLQRD-----FISLLPNFDEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQ 153
LK ++ D F+ PN KYI++A+ D T+K+W+ S + ++T GHK C+
Sbjct: 208 LKTLIDDDNPPVSFVKFSPN--GKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 265
Query: 154 YR-----DRLVVSGSSDNTI 168
+ +VSGS DN +
Sbjct: 266 ANFSVTGGKWIVSGSEDNLV 285
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 42/197 (21%), Positives = 83/197 (42%), Gaps = 56/197 (28%)
Query: 113 NFDEKYIVSASGDRTIKVWNTSSCEFVRTL-NGHKRGIACLQYRDRLVVSGSSDNTIRYR 171
N D IVS+S D ++W+T+S + ++TL + ++ +++ +Y
Sbjct: 182 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG----------KY- 230
Query: 172 DEFQIVSSSHDDTILIWDFLNYSETPIQXXXXXXXXXXXXXIENNWRMGKFLLQRINCRS 231
I++++ D+T+ +WD+ GK L ++
Sbjct: 231 ----ILAATLDNTLKLWDY---------------------------SKGKCLKTYTGHKN 259
Query: 232 ENSKGVYCLQYD-----DHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVL--CLQYDE 284
E YC+ + IVSG DN + +W+ + + ++ L GHT V+ E
Sbjct: 260 EK----YCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 315
Query: 285 RVIISGS--SDSTVRVW 299
+I S + +D T+++W
Sbjct: 316 NIIASAALENDKTIKLW 332
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 119 bits (298), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 127/235 (54%), Gaps = 17/235 (7%)
Query: 243 DDHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVLCLQYDER--VIISGSSDSTVRVWD 300
D + +VS D T+K+WD S +C+K L GH+ V C ++ + +I+SGS D +VR+WD
Sbjct: 82 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 141
Query: 301 VNTGEMVNTLIHHCEAV--LHLRFSNGMMVTCSKDRSIAVWDMVSPNEITLRRVLVGHRA 358
V TG+ + TL H + V +H ++V+ S D +WD S L+ ++
Sbjct: 142 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ--CLKTLIDDDNP 199
Query: 359 AVNVVDF--DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYR-----DRLVV 411
V+ V F + KYI++A+ D T+K+W+ S + ++T GHK C+ + +V
Sbjct: 200 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 259
Query: 412 SGSSDNTIRLWDIECGACLRVLEGHEELVRCIR-FDAKRIVSGAY---DGKIKVW 462
SGS DN + +W+++ ++ L+GH ++V + I++ A D IK+W
Sbjct: 260 SGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 101/183 (55%), Gaps = 20/183 (10%)
Query: 309 TLIHHCEAVLHLRFS-NG-MMVTCSKDRSIAVWDMVSPNEITLRRVLVGHRAAVNVVDF- 365
TL H +AV ++FS NG + + S D+ I +W + + + GH+ ++ V +
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEKTISGHKLGISDVAWS 80
Query: 366 -DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLW 422
D +VSAS D+T+K+W+ SS + ++TL GH + C + + L+VSGS D ++R+W
Sbjct: 81 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 140
Query: 423 DIECGACLRVLEGHEELVRCIRF--DAKRIVSGAYDGKIKVWNLVAALDPRAPTTTLCLR 480
D++ G CL+ L H + V + F D IVS +YDG ++W+ + CL+
Sbjct: 141 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG---------QCLK 191
Query: 481 TLV 483
TL+
Sbjct: 192 TLI 194
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 122/232 (52%), Gaps = 17/232 (7%)
Query: 247 IVSGLRDNTIKVWDRVSLQCIKVLTGHTGSV--LCLQYDERVIISGSSDSTVRVWDVNTG 304
+ S D IK+W + K ++GH + + D +++S S D T+++WDV++G
Sbjct: 44 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 103
Query: 305 EMVNTLIHHCEAVLHLRFS--NGMMVTCSKDRSIAVWDMVSPNEITLRRVLVGHRAAVNV 362
+ + TL H V F+ + ++V+ S D S+ +WD+ + + + L H V+
Sbjct: 104 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL---KTLPAHSDPVSA 160
Query: 363 VDF--DEKYIVSASGDRTIKVWNTSSCEFVRTL-NGHKRGIACLQY--RDRLVVSGSSDN 417
V F D IVS+S D ++W+T+S + ++TL + ++ +++ + +++ + DN
Sbjct: 161 VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 220
Query: 418 TIRLWDIECGACLRVLEGHEELVRCIRFD-----AKRIVSGAYDGKIKVWNL 464
T++LWD G CL+ GH+ CI + K IVSG+ D + +WNL
Sbjct: 221 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 272
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 85/147 (57%), Gaps = 16/147 (10%)
Query: 342 VSPNEITLRRVLVGHRAAVNVVDF--DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRG 399
V PN L+ L GH AV+ V F + +++ S+S D+ IK+W +F +T++GHK G
Sbjct: 15 VKPN-YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG 73
Query: 400 IACLQYRD--RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDAKR--IVSGAY 455
I+ + + L+VS S D T+++WD+ G CL+ L+GH V C F+ + IVSG++
Sbjct: 74 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 133
Query: 456 DGKIKVWNLVAALDPRAPTTTLCLRTL 482
D +++W++ T CL+TL
Sbjct: 134 DESVRIWDV---------KTGKCLKTL 151
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 106/238 (44%), Gaps = 64/238 (26%)
Query: 115 DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRY-- 170
D +VSAS D+T+K+W+ SS + ++TL GH + C + + L+VSGS D ++R
Sbjct: 82 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 141
Query: 171 -----------------------RDEFQIVSSSHDDTILIWDFLNYSETPIQXXXXXXXX 207
RD IVSSS+D IWD +
Sbjct: 142 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS--------------- 186
Query: 208 XXXXXIENNWRMGKFLLQRINCRSENSKGVYCLQYDDHK--IVSGLRDNTIKVWDRVSLQ 265
G+ L I+ +++ V +++ + I++ DNT+K+WD +
Sbjct: 187 ------------GQCLKTLID---DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK 231
Query: 266 CIKVLTGHTGSVLCLQYDERV-----IISGSSDSTVRVWDVNTGEMVNTLIHHCEAVL 318
C+K TGH C+ + V I+SGS D+ V +W++ T E+V L H + V+
Sbjct: 232 CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVI 289
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 12/80 (15%)
Query: 99 LKPMLQRD-----FISLLPNFDEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQ 153
LK ++ D F+ PN KYI++A+ D T+K+W+ S + ++T GHK C+
Sbjct: 190 LKTLIDDDNPPVSFVKFSPN--GKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 247
Query: 154 YR-----DRLVVSGSSDNTI 168
+ +VSGS DN +
Sbjct: 248 ANFSVTGGKWIVSGSEDNLV 267
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 42/197 (21%), Positives = 83/197 (42%), Gaps = 56/197 (28%)
Query: 113 NFDEKYIVSASGDRTIKVWNTSSCEFVRTL-NGHKRGIACLQYRDRLVVSGSSDNTIRYR 171
N D IVS+S D ++W+T+S + ++TL + ++ +++ +Y
Sbjct: 164 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG----------KY- 212
Query: 172 DEFQIVSSSHDDTILIWDFLNYSETPIQXXXXXXXXXXXXXIENNWRMGKFLLQRINCRS 231
I++++ D+T+ +WD+ GK L ++
Sbjct: 213 ----ILAATLDNTLKLWDY---------------------------SKGKCLKTYTGHKN 241
Query: 232 ENSKGVYCLQYD-----DHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVL--CLQYDE 284
E YC+ + IVSG DN + +W+ + + ++ L GHT V+ E
Sbjct: 242 EK----YCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 297
Query: 285 RVIISGS--SDSTVRVW 299
+I S + +D T+++W
Sbjct: 298 NIIASAALENDKTIKLW 314
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 119 bits (298), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 127/235 (54%), Gaps = 17/235 (7%)
Query: 243 DDHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVLCLQYDER--VIISGSSDSTVRVWD 300
D + +VS D T+K+WD S +C+K L GH+ V C ++ + +I+SGS D +VR+WD
Sbjct: 93 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 152
Query: 301 VNTGEMVNTLIHHCEAV--LHLRFSNGMMVTCSKDRSIAVWDMVSPNEITLRRVLVGHRA 358
V TG+ + TL H + V +H ++V+ S D +WD S L+ ++
Sbjct: 153 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ--CLKTLIDDDNP 210
Query: 359 AVNVVDF--DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYR-----DRLVV 411
V+ V F + KYI++A+ D T+K+W+ S + ++T GHK C+ + +V
Sbjct: 211 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 270
Query: 412 SGSSDNTIRLWDIECGACLRVLEGHEELVRCIR-FDAKRIVSGAY---DGKIKVW 462
SGS DN + +W+++ ++ L+GH ++V + I++ A D IK+W
Sbjct: 271 SGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 325
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 101/183 (55%), Gaps = 20/183 (10%)
Query: 309 TLIHHCEAVLHLRFS-NG-MMVTCSKDRSIAVWDMVSPNEITLRRVLVGHRAAVNVVDF- 365
TL H +AV ++FS NG + + S D+ I +W + + + GH+ ++ V +
Sbjct: 35 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEKTISGHKLGISDVAWS 91
Query: 366 -DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLW 422
D +VSAS D+T+K+W+ SS + ++TL GH + C + + L+VSGS D ++R+W
Sbjct: 92 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 151
Query: 423 DIECGACLRVLEGHEELVRCIRF--DAKRIVSGAYDGKIKVWNLVAALDPRAPTTTLCLR 480
D++ G CL+ L H + V + F D IVS +YDG ++W+ + CL+
Sbjct: 152 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG---------QCLK 202
Query: 481 TLV 483
TL+
Sbjct: 203 TLI 205
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 122/232 (52%), Gaps = 17/232 (7%)
Query: 247 IVSGLRDNTIKVWDRVSLQCIKVLTGHTGSV--LCLQYDERVIISGSSDSTVRVWDVNTG 304
+ S D IK+W + K ++GH + + D +++S S D T+++WDV++G
Sbjct: 55 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 114
Query: 305 EMVNTLIHHCEAVLHLRFS--NGMMVTCSKDRSIAVWDMVSPNEITLRRVLVGHRAAVNV 362
+ + TL H V F+ + ++V+ S D S+ +WD+ + + + L H V+
Sbjct: 115 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL---KTLPAHSDPVSA 171
Query: 363 VDF--DEKYIVSASGDRTIKVWNTSSCEFVRTL-NGHKRGIACLQY--RDRLVVSGSSDN 417
V F D IVS+S D ++W+T+S + ++TL + ++ +++ + +++ + DN
Sbjct: 172 VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 231
Query: 418 TIRLWDIECGACLRVLEGHEELVRCIRFD-----AKRIVSGAYDGKIKVWNL 464
T++LWD G CL+ GH+ CI + K IVSG+ D + +WNL
Sbjct: 232 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 283
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 85/147 (57%), Gaps = 16/147 (10%)
Query: 342 VSPNEITLRRVLVGHRAAVNVVDF--DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRG 399
V PN L+ L GH AV+ V F + +++ S+S D+ IK+W +F +T++GHK G
Sbjct: 26 VKPN-YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG 84
Query: 400 IACLQYRD--RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDAKR--IVSGAY 455
I+ + + L+VS S D T+++WD+ G CL+ L+GH V C F+ + IVSG++
Sbjct: 85 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 144
Query: 456 DGKIKVWNLVAALDPRAPTTTLCLRTL 482
D +++W++ T CL+TL
Sbjct: 145 DESVRIWDV---------KTGKCLKTL 162
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 106/238 (44%), Gaps = 64/238 (26%)
Query: 115 DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRY-- 170
D +VSAS D+T+K+W+ SS + ++TL GH + C + + L+VSGS D ++R
Sbjct: 93 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 152
Query: 171 -----------------------RDEFQIVSSSHDDTILIWDFLNYSETPIQXXXXXXXX 207
RD IVSSS+D IWD +
Sbjct: 153 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS--------------- 197
Query: 208 XXXXXIENNWRMGKFLLQRINCRSENSKGVYCLQY--DDHKIVSGLRDNTIKVWDRVSLQ 265
G+ L I+ +++ V +++ + I++ DNT+K+WD +
Sbjct: 198 ------------GQCLKTLID---DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK 242
Query: 266 CIKVLTGHTGSVLCLQYDERV-----IISGSSDSTVRVWDVNTGEMVNTLIHHCEAVL 318
C+K TGH C+ + V I+SGS D+ V +W++ T E+V L H + V+
Sbjct: 243 CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVI 300
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 12/80 (15%)
Query: 99 LKPMLQRD-----FISLLPNFDEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQ 153
LK ++ D F+ PN KYI++A+ D T+K+W+ S + ++T GHK C+
Sbjct: 201 LKTLIDDDNPPVSFVKFSPN--GKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 258
Query: 154 YR-----DRLVVSGSSDNTI 168
+ +VSGS DN +
Sbjct: 259 ANFSVTGGKWIVSGSEDNLV 278
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 42/197 (21%), Positives = 83/197 (42%), Gaps = 56/197 (28%)
Query: 113 NFDEKYIVSASGDRTIKVWNTSSCEFVRTL-NGHKRGIACLQYRDRLVVSGSSDNTIRYR 171
N D IVS+S D ++W+T+S + ++TL + ++ +++ +Y
Sbjct: 175 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG----------KY- 223
Query: 172 DEFQIVSSSHDDTILIWDFLNYSETPIQXXXXXXXXXXXXXIENNWRMGKFLLQRINCRS 231
I++++ D+T+ +WD+ GK L ++
Sbjct: 224 ----ILAATLDNTLKLWDY---------------------------SKGKCLKTYTGHKN 252
Query: 232 ENSKGVYCLQYD-----DHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVL--CLQYDE 284
E YC+ + IVSG DN + +W+ + + ++ L GHT V+ E
Sbjct: 253 EK----YCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 308
Query: 285 RVIISGS--SDSTVRVW 299
+I S + +D T+++W
Sbjct: 309 NIIASAALENDKTIKLW 325
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 119 bits (298), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 127/235 (54%), Gaps = 17/235 (7%)
Query: 243 DDHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVLCLQYDER--VIISGSSDSTVRVWD 300
D + +VS D T+K+WD S +C+K L GH+ V C ++ + +I+SGS D +VR+WD
Sbjct: 76 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 135
Query: 301 VNTGEMVNTLIHHCEAV--LHLRFSNGMMVTCSKDRSIAVWDMVSPNEITLRRVLVGHRA 358
V TG+ + TL H + V +H ++V+ S D +WD S L+ ++
Sbjct: 136 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ--CLKTLIDDDNP 193
Query: 359 AVNVVDF--DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYR-----DRLVV 411
V+ V F + KYI++A+ D T+K+W+ S + ++T GHK C+ + +V
Sbjct: 194 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 253
Query: 412 SGSSDNTIRLWDIECGACLRVLEGHEELVRCIR-FDAKRIVSGAY---DGKIKVW 462
SGS DN + +W+++ ++ L+GH ++V + I++ A D IK+W
Sbjct: 254 SGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 308
Score = 106 bits (265), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 101/183 (55%), Gaps = 20/183 (10%)
Query: 309 TLIHHCEAVLHLRFS-NG-MMVTCSKDRSIAVWDMVSPNEITLRRVLVGHRAAVNVVDF- 365
TL H +AV ++FS NG + + S D+ I +W + + + GH+ ++ V +
Sbjct: 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEKTISGHKLGISDVAWS 74
Query: 366 -DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLW 422
D +VSAS D+T+K+W+ SS + ++TL GH + C + + L+VSGS D ++R+W
Sbjct: 75 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 134
Query: 423 DIECGACLRVLEGHEELVRCIRF--DAKRIVSGAYDGKIKVWNLVAALDPRAPTTTLCLR 480
D++ G CL+ L H + V + F D IVS +YDG ++W+ + CL+
Sbjct: 135 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG---------QCLK 185
Query: 481 TLV 483
TL+
Sbjct: 186 TLI 188
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 122/232 (52%), Gaps = 17/232 (7%)
Query: 247 IVSGLRDNTIKVWDRVSLQCIKVLTGHTGSV--LCLQYDERVIISGSSDSTVRVWDVNTG 304
+ S D IK+W + K ++GH + + D +++S S D T+++WDV++G
Sbjct: 38 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 97
Query: 305 EMVNTLIHHCEAVLHLRFS--NGMMVTCSKDRSIAVWDMVSPNEITLRRVLVGHRAAVNV 362
+ + TL H V F+ + ++V+ S D S+ +WD+ + + + L H V+
Sbjct: 98 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL---KTLPAHSDPVSA 154
Query: 363 VDF--DEKYIVSASGDRTIKVWNTSSCEFVRTL-NGHKRGIACLQY--RDRLVVSGSSDN 417
V F D IVS+S D ++W+T+S + ++TL + ++ +++ + +++ + DN
Sbjct: 155 VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 214
Query: 418 TIRLWDIECGACLRVLEGHEELVRCIRFD-----AKRIVSGAYDGKIKVWNL 464
T++LWD G CL+ GH+ CI + K IVSG+ D + +WNL
Sbjct: 215 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 266
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 85/147 (57%), Gaps = 16/147 (10%)
Query: 342 VSPNEITLRRVLVGHRAAVNVVDF--DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRG 399
V PN L+ L GH AV+ V F + +++ S+S D+ IK+W +F +T++GHK G
Sbjct: 9 VKPN-YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG 67
Query: 400 IACLQYRD--RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDAKR--IVSGAY 455
I+ + + L+VS S D T+++WD+ G CL+ L+GH V C F+ + IVSG++
Sbjct: 68 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 127
Query: 456 DGKIKVWNLVAALDPRAPTTTLCLRTL 482
D +++W++ T CL+TL
Sbjct: 128 DESVRIWDV---------KTGKCLKTL 145
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 106/238 (44%), Gaps = 64/238 (26%)
Query: 115 DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRY-- 170
D +VSAS D+T+K+W+ SS + ++TL GH + C + + L+VSGS D ++R
Sbjct: 76 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 135
Query: 171 -----------------------RDEFQIVSSSHDDTILIWDFLNYSETPIQXXXXXXXX 207
RD IVSSS+D IWD +
Sbjct: 136 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS--------------- 180
Query: 208 XXXXXIENNWRMGKFLLQRINCRSENSKGVYCLQYDDHK--IVSGLRDNTIKVWDRVSLQ 265
G+ L I+ +++ V +++ + I++ DNT+K+WD +
Sbjct: 181 ------------GQCLKTLID---DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK 225
Query: 266 CIKVLTGHTGSVLCLQYDERV-----IISGSSDSTVRVWDVNTGEMVNTLIHHCEAVL 318
C+K TGH C+ + V I+SGS D+ V +W++ T E+V L H + V+
Sbjct: 226 CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVI 283
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 12/80 (15%)
Query: 99 LKPMLQRD-----FISLLPNFDEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQ 153
LK ++ D F+ PN KYI++A+ D T+K+W+ S + ++T GHK C+
Sbjct: 184 LKTLIDDDNPPVSFVKFSPN--GKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 241
Query: 154 YR-----DRLVVSGSSDNTI 168
+ +VSGS DN +
Sbjct: 242 ANFSVTGGKWIVSGSEDNLV 261
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 42/197 (21%), Positives = 83/197 (42%), Gaps = 56/197 (28%)
Query: 113 NFDEKYIVSASGDRTIKVWNTSSCEFVRTL-NGHKRGIACLQYRDRLVVSGSSDNTIRYR 171
N D IVS+S D ++W+T+S + ++TL + ++ +++ +Y
Sbjct: 158 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG----------KY- 206
Query: 172 DEFQIVSSSHDDTILIWDFLNYSETPIQXXXXXXXXXXXXXIENNWRMGKFLLQRINCRS 231
I++++ D+T+ +WD+ GK L ++
Sbjct: 207 ----ILAATLDNTLKLWDY---------------------------SKGKCLKTYTGHKN 235
Query: 232 ENSKGVYCLQYD-----DHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVL--CLQYDE 284
E YC+ + IVSG DN + +W+ + + ++ L GHT V+ E
Sbjct: 236 EK----YCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 291
Query: 285 RVIISGS--SDSTVRVW 299
+I S + +D T+++W
Sbjct: 292 NIIASAALENDKTIKLW 308
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 119 bits (297), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 127/235 (54%), Gaps = 17/235 (7%)
Query: 243 DDHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVLCLQYDER--VIISGSSDSTVRVWD 300
D + +VS D T+K+WD S +C+K L GH+ V C ++ + +I+SGS D +VR+WD
Sbjct: 82 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 141
Query: 301 VNTGEMVNTLIHHCEAV--LHLRFSNGMMVTCSKDRSIAVWDMVSPNEITLRRVLVGHRA 358
V TG+ + TL H + V +H ++V+ S D +WD S L+ ++
Sbjct: 142 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ--CLKTLIDDDNP 199
Query: 359 AVNVVDF--DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYR-----DRLVV 411
V+ V F + KYI++A+ D T+K+W+ S + ++T GHK C+ + +V
Sbjct: 200 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 259
Query: 412 SGSSDNTIRLWDIECGACLRVLEGHEELVRCIR-FDAKRIVSGAY---DGKIKVW 462
SGS DN + +W+++ ++ L+GH ++V + I++ A D IK+W
Sbjct: 260 SGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 101/183 (55%), Gaps = 20/183 (10%)
Query: 309 TLIHHCEAVLHLRFS-NG-MMVTCSKDRSIAVWDMVSPNEITLRRVLVGHRAAVNVVDF- 365
TL H +AV ++FS NG + + S D+ I +W + + + GH+ ++ V +
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEKTISGHKLGISDVAWS 80
Query: 366 -DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLW 422
D +VSAS D+T+K+W+ SS + ++TL GH + C + + L+VSGS D ++R+W
Sbjct: 81 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 140
Query: 423 DIECGACLRVLEGHEELVRCIRF--DAKRIVSGAYDGKIKVWNLVAALDPRAPTTTLCLR 480
D++ G CL+ L H + V + F D IVS +YDG ++W+ + CL+
Sbjct: 141 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG---------QCLK 191
Query: 481 TLV 483
TL+
Sbjct: 192 TLI 194
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 122/232 (52%), Gaps = 17/232 (7%)
Query: 247 IVSGLRDNTIKVWDRVSLQCIKVLTGHTGSV--LCLQYDERVIISGSSDSTVRVWDVNTG 304
+ S D IK+W + K ++GH + + D +++S S D T+++WDV++G
Sbjct: 44 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 103
Query: 305 EMVNTLIHHCEAVLHLRFS--NGMMVTCSKDRSIAVWDMVSPNEITLRRVLVGHRAAVNV 362
+ + TL H V F+ + ++V+ S D S+ +WD+ + + + L H V+
Sbjct: 104 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL---KTLPAHSDPVSA 160
Query: 363 VDF--DEKYIVSASGDRTIKVWNTSSCEFVRTL-NGHKRGIACLQY--RDRLVVSGSSDN 417
V F D IVS+S D ++W+T+S + ++TL + ++ +++ + +++ + DN
Sbjct: 161 VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 220
Query: 418 TIRLWDIECGACLRVLEGHEELVRCIRFD-----AKRIVSGAYDGKIKVWNL 464
T++LWD G CL+ GH+ CI + K IVSG+ D + +WNL
Sbjct: 221 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 272
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 85/147 (57%), Gaps = 16/147 (10%)
Query: 342 VSPNEITLRRVLVGHRAAVNVVDF--DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRG 399
V PN L+ L GH AV+ V F + +++ S+S D+ IK+W +F +T++GHK G
Sbjct: 15 VKPN-YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG 73
Query: 400 IACLQYRD--RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDAKR--IVSGAY 455
I+ + + L+VS S D T+++WD+ G CL+ L+GH V C F+ + IVSG++
Sbjct: 74 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 133
Query: 456 DGKIKVWNLVAALDPRAPTTTLCLRTL 482
D +++W++ T CL+TL
Sbjct: 134 DESVRIWDV---------KTGKCLKTL 151
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 106/238 (44%), Gaps = 64/238 (26%)
Query: 115 DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRY-- 170
D +VSAS D+T+K+W+ SS + ++TL GH + C + + L+VSGS D ++R
Sbjct: 82 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 141
Query: 171 -----------------------RDEFQIVSSSHDDTILIWDFLNYSETPIQXXXXXXXX 207
RD IVSSS+D IWD +
Sbjct: 142 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS--------------- 186
Query: 208 XXXXXIENNWRMGKFLLQRINCRSENSKGVYCLQYDDHK--IVSGLRDNTIKVWDRVSLQ 265
G+ L I+ +++ V +++ + I++ DNT+K+WD +
Sbjct: 187 ------------GQCLKTLID---DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK 231
Query: 266 CIKVLTGHTGSVLCLQYDERV-----IISGSSDSTVRVWDVNTGEMVNTLIHHCEAVL 318
C+K TGH C+ + V I+SGS D+ V +W++ T E+V L H + V+
Sbjct: 232 CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVI 289
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 12/80 (15%)
Query: 99 LKPMLQRD-----FISLLPNFDEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQ 153
LK ++ D F+ PN KYI++A+ D T+K+W+ S + ++T GHK C+
Sbjct: 190 LKTLIDDDNPPVSFVKFSPN--GKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 247
Query: 154 YR-----DRLVVSGSSDNTI 168
+ +VSGS DN +
Sbjct: 248 ANFSVTGGKWIVSGSEDNLV 267
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 42/197 (21%), Positives = 83/197 (42%), Gaps = 56/197 (28%)
Query: 113 NFDEKYIVSASGDRTIKVWNTSSCEFVRTL-NGHKRGIACLQYRDRLVVSGSSDNTIRYR 171
N D IVS+S D ++W+T+S + ++TL + ++ +++ +Y
Sbjct: 164 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG----------KY- 212
Query: 172 DEFQIVSSSHDDTILIWDFLNYSETPIQXXXXXXXXXXXXXIENNWRMGKFLLQRINCRS 231
I++++ D+T+ +WD+ GK L ++
Sbjct: 213 ----ILAATLDNTLKLWDY---------------------------SKGKCLKTYTGHKN 241
Query: 232 ENSKGVYCLQYD-----DHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVL--CLQYDE 284
E YC+ + IVSG DN + +W+ + + ++ L GHT V+ E
Sbjct: 242 EK----YCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 297
Query: 285 RVIISGS--SDSTVRVW 299
+I S + +D T+++W
Sbjct: 298 NIIASAALENDKTIKLW 314
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 119 bits (297), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 117/209 (55%), Gaps = 13/209 (6%)
Query: 243 DDHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVLCLQYDER--VIISGSSDSTVRVWD 300
D + +VS D T+K+WD S +C+K L GH+ V C ++ + +I+SGS D +VR+WD
Sbjct: 76 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 135
Query: 301 VNTGEMVNTLIHHCEAV--LHLRFSNGMMVTCSKDRSIAVWDMVSPNEITLRRVLVGHRA 358
V TG+ + TL H + V +H ++V+ S D +WD S L+ ++
Sbjct: 136 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ--CLKTLIDDDNP 193
Query: 359 AVNVVDF--DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYR-----DRLVV 411
V+ V F + KYI++A+ D T+K+W+ S + ++T GHK C+ + +V
Sbjct: 194 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 253
Query: 412 SGSSDNTIRLWDIECGACLRVLEGHEELV 440
SGS DN + +W+++ ++ L+GH ++V
Sbjct: 254 SGSEDNLVYIWNLQTKEIVQKLQGHTDVV 282
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 101/183 (55%), Gaps = 20/183 (10%)
Query: 309 TLIHHCEAVLHLRFS-NG-MMVTCSKDRSIAVWDMVSPNEITLRRVLVGHRAAVNVVDF- 365
TL H +AV ++FS NG + + S D+ I +W + + + GH+ ++ V +
Sbjct: 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEKTISGHKLGISDVAWS 74
Query: 366 -DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLW 422
D +VSAS D+T+K+W+ SS + ++TL GH + C + + L+VSGS D ++R+W
Sbjct: 75 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 134
Query: 423 DIECGACLRVLEGHEELVRCIRF--DAKRIVSGAYDGKIKVWNLVAALDPRAPTTTLCLR 480
D++ G CL+ L H + V + F D IVS +YDG ++W+ + CL+
Sbjct: 135 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG---------QCLK 185
Query: 481 TLV 483
TL+
Sbjct: 186 TLI 188
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 122/232 (52%), Gaps = 17/232 (7%)
Query: 247 IVSGLRDNTIKVWDRVSLQCIKVLTGHTGSV--LCLQYDERVIISGSSDSTVRVWDVNTG 304
+ S D IK+W + K ++GH + + D +++S S D T+++WDV++G
Sbjct: 38 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 97
Query: 305 EMVNTLIHHCEAVLHLRFS--NGMMVTCSKDRSIAVWDMVSPNEITLRRVLVGHRAAVNV 362
+ + TL H V F+ + ++V+ S D S+ +WD+ + + + L H V+
Sbjct: 98 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL---KTLPAHSDPVSA 154
Query: 363 VDF--DEKYIVSASGDRTIKVWNTSSCEFVRTL-NGHKRGIACLQY--RDRLVVSGSSDN 417
V F D IVS+S D ++W+T+S + ++TL + ++ +++ + +++ + DN
Sbjct: 155 VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 214
Query: 418 TIRLWDIECGACLRVLEGHEELVRCIRFD-----AKRIVSGAYDGKIKVWNL 464
T++LWD G CL+ GH+ CI + K IVSG+ D + +WNL
Sbjct: 215 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 266
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 85/147 (57%), Gaps = 16/147 (10%)
Query: 342 VSPNEITLRRVLVGHRAAVNVVDF--DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRG 399
V PN L+ L GH AV+ V F + +++ S+S D+ IK+W +F +T++GHK G
Sbjct: 9 VKPN-YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG 67
Query: 400 IACLQYRD--RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDAKR--IVSGAY 455
I+ + + L+VS S D T+++WD+ G CL+ L+GH V C F+ + IVSG++
Sbjct: 68 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 127
Query: 456 DGKIKVWNLVAALDPRAPTTTLCLRTL 482
D +++W++ T CL+TL
Sbjct: 128 DESVRIWDV---------KTGKCLKTL 145
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 106/238 (44%), Gaps = 64/238 (26%)
Query: 115 DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRY-- 170
D +VSAS D+T+K+W+ SS + ++TL GH + C + + L+VSGS D ++R
Sbjct: 76 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 135
Query: 171 -----------------------RDEFQIVSSSHDDTILIWDFLNYSETPIQXXXXXXXX 207
RD IVSSS+D IWD +
Sbjct: 136 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS--------------- 180
Query: 208 XXXXXIENNWRMGKFLLQRINCRSENSKGVYCLQYDDHK--IVSGLRDNTIKVWDRVSLQ 265
G+ L I+ +++ V +++ + I++ DNT+K+WD +
Sbjct: 181 ------------GQCLKTLID---DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK 225
Query: 266 CIKVLTGHTGSVLCLQYDERV-----IISGSSDSTVRVWDVNTGEMVNTLIHHCEAVL 318
C+K TGH C+ + V I+SGS D+ V +W++ T E+V L H + V+
Sbjct: 226 CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVI 283
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 12/80 (15%)
Query: 99 LKPMLQRD-----FISLLPNFDEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQ 153
LK ++ D F+ PN KYI++A+ D T+K+W+ S + ++T GHK C+
Sbjct: 184 LKTLIDDDNPPVSFVKFSPN--GKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 241
Query: 154 YR-----DRLVVSGSSDNTI 168
+ +VSGS DN +
Sbjct: 242 ANFSVTGGKWIVSGSEDNLV 261
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 42/197 (21%), Positives = 83/197 (42%), Gaps = 56/197 (28%)
Query: 113 NFDEKYIVSASGDRTIKVWNTSSCEFVRTL-NGHKRGIACLQYRDRLVVSGSSDNTIRYR 171
N D IVS+S D ++W+T+S + ++TL + ++ +++ +Y
Sbjct: 158 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG----------KY- 206
Query: 172 DEFQIVSSSHDDTILIWDFLNYSETPIQXXXXXXXXXXXXXIENNWRMGKFLLQRINCRS 231
I++++ D+T+ +WD+ GK L ++
Sbjct: 207 ----ILAATLDNTLKLWDY---------------------------SKGKCLKTYTGHKN 235
Query: 232 ENSKGVYCLQYD-----DHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVL--CLQYDE 284
E YC+ + IVSG DN + +W+ + + ++ L GHT V+ E
Sbjct: 236 EK----YCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 291
Query: 285 RVIISGS--SDSTVRVW 299
+I S + +D T+++W
Sbjct: 292 NIIASAALENDKTIKLW 308
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 119 bits (297), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 117/209 (55%), Gaps = 13/209 (6%)
Query: 243 DDHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVLCLQYDER--VIISGSSDSTVRVWD 300
D + +VS D T+K+WD S +C+K L GH+ V C ++ + +I+SGS D +VR+WD
Sbjct: 77 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 136
Query: 301 VNTGEMVNTLIHHCEAV--LHLRFSNGMMVTCSKDRSIAVWDMVSPNEITLRRVLVGHRA 358
V TG+ + TL H + V +H ++V+ S D +WD S L+ ++
Sbjct: 137 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ--CLKTLIDDDNP 194
Query: 359 AVNVVDF--DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYR-----DRLVV 411
V+ V F + KYI++A+ D T+K+W+ S + ++T GHK C+ + +V
Sbjct: 195 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 254
Query: 412 SGSSDNTIRLWDIECGACLRVLEGHEELV 440
SGS DN + +W+++ ++ L+GH ++V
Sbjct: 255 SGSEDNLVYIWNLQTKEIVQKLQGHTDVV 283
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 101/183 (55%), Gaps = 20/183 (10%)
Query: 309 TLIHHCEAVLHLRFS-NG-MMVTCSKDRSIAVWDMVSPNEITLRRVLVGHRAAVNVVDF- 365
TL H +AV ++FS NG + + S D+ I +W + + + GH+ ++ V +
Sbjct: 19 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEKTISGHKLGISDVAWS 75
Query: 366 -DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLW 422
D +VSAS D+T+K+W+ SS + ++TL GH + C + + L+VSGS D ++R+W
Sbjct: 76 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 135
Query: 423 DIECGACLRVLEGHEELVRCIRF--DAKRIVSGAYDGKIKVWNLVAALDPRAPTTTLCLR 480
D++ G CL+ L H + V + F D IVS +YDG ++W+ + CL+
Sbjct: 136 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG---------QCLK 186
Query: 481 TLV 483
TL+
Sbjct: 187 TLI 189
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 122/232 (52%), Gaps = 17/232 (7%)
Query: 247 IVSGLRDNTIKVWDRVSLQCIKVLTGHTGSV--LCLQYDERVIISGSSDSTVRVWDVNTG 304
+ S D IK+W + K ++GH + + D +++S S D T+++WDV++G
Sbjct: 39 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 98
Query: 305 EMVNTLIHHCEAVLHLRFS--NGMMVTCSKDRSIAVWDMVSPNEITLRRVLVGHRAAVNV 362
+ + TL H V F+ + ++V+ S D S+ +WD+ + + + L H V+
Sbjct: 99 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL---KTLPAHSDPVSA 155
Query: 363 VDF--DEKYIVSASGDRTIKVWNTSSCEFVRTL-NGHKRGIACLQY--RDRLVVSGSSDN 417
V F D IVS+S D ++W+T+S + ++TL + ++ +++ + +++ + DN
Sbjct: 156 VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 215
Query: 418 TIRLWDIECGACLRVLEGHEELVRCIRFD-----AKRIVSGAYDGKIKVWNL 464
T++LWD G CL+ GH+ CI + K IVSG+ D + +WNL
Sbjct: 216 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 267
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 85/147 (57%), Gaps = 16/147 (10%)
Query: 342 VSPNEITLRRVLVGHRAAVNVVDF--DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRG 399
V PN L+ L GH AV+ V F + +++ S+S D+ IK+W +F +T++GHK G
Sbjct: 10 VKPN-YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG 68
Query: 400 IACLQYRD--RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDAKR--IVSGAY 455
I+ + + L+VS S D T+++WD+ G CL+ L+GH V C F+ + IVSG++
Sbjct: 69 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 128
Query: 456 DGKIKVWNLVAALDPRAPTTTLCLRTL 482
D +++W++ T CL+TL
Sbjct: 129 DESVRIWDV---------KTGKCLKTL 146
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 106/238 (44%), Gaps = 64/238 (26%)
Query: 115 DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRY-- 170
D +VSAS D+T+K+W+ SS + ++TL GH + C + + L+VSGS D ++R
Sbjct: 77 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 136
Query: 171 -----------------------RDEFQIVSSSHDDTILIWDFLNYSETPIQXXXXXXXX 207
RD IVSSS+D IWD +
Sbjct: 137 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS--------------- 181
Query: 208 XXXXXIENNWRMGKFLLQRINCRSENSKGVYCLQYDDHK--IVSGLRDNTIKVWDRVSLQ 265
G+ L I+ +++ V +++ + I++ DNT+K+WD +
Sbjct: 182 ------------GQCLKTLID---DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK 226
Query: 266 CIKVLTGHTGSVLCLQYDERV-----IISGSSDSTVRVWDVNTGEMVNTLIHHCEAVL 318
C+K TGH C+ + V I+SGS D+ V +W++ T E+V L H + V+
Sbjct: 227 CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVI 284
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 12/80 (15%)
Query: 99 LKPMLQRD-----FISLLPNFDEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQ 153
LK ++ D F+ PN KYI++A+ D T+K+W+ S + ++T GHK C+
Sbjct: 185 LKTLIDDDNPPVSFVKFSPN--GKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 242
Query: 154 YR-----DRLVVSGSSDNTI 168
+ +VSGS DN +
Sbjct: 243 ANFSVTGGKWIVSGSEDNLV 262
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 42/197 (21%), Positives = 83/197 (42%), Gaps = 56/197 (28%)
Query: 113 NFDEKYIVSASGDRTIKVWNTSSCEFVRTL-NGHKRGIACLQYRDRLVVSGSSDNTIRYR 171
N D IVS+S D ++W+T+S + ++TL + ++ +++ +Y
Sbjct: 159 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG----------KY- 207
Query: 172 DEFQIVSSSHDDTILIWDFLNYSETPIQXXXXXXXXXXXXXIENNWRMGKFLLQRINCRS 231
I++++ D+T+ +WD+ GK L ++
Sbjct: 208 ----ILAATLDNTLKLWDY---------------------------SKGKCLKTYTGHKN 236
Query: 232 ENSKGVYCLQYD-----DHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVL--CLQYDE 284
E YC+ + IVSG DN + +W+ + + ++ L GHT V+ E
Sbjct: 237 EK----YCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 292
Query: 285 RVIISGS--SDSTVRVW 299
+I S + +D T+++W
Sbjct: 293 NIIASAALENDKTIKLW 309
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 119 bits (297), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 117/209 (55%), Gaps = 13/209 (6%)
Query: 243 DDHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVLCLQYDER--VIISGSSDSTVRVWD 300
D + +VS D T+K+WD S +C+K L GH+ V C ++ + +I+SGS D +VR+WD
Sbjct: 81 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 140
Query: 301 VNTGEMVNTLIHHCEAV--LHLRFSNGMMVTCSKDRSIAVWDMVSPNEITLRRVLVGHRA 358
V TG+ + TL H + V +H ++V+ S D +WD S L+ ++
Sbjct: 141 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ--CLKTLIDDDNP 198
Query: 359 AVNVVDF--DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYR-----DRLVV 411
V+ V F + KYI++A+ D T+K+W+ S + ++T GHK C+ + +V
Sbjct: 199 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 258
Query: 412 SGSSDNTIRLWDIECGACLRVLEGHEELV 440
SGS DN + +W+++ ++ L+GH ++V
Sbjct: 259 SGSEDNLVYIWNLQTKEIVQKLQGHTDVV 287
Score = 106 bits (265), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 101/183 (55%), Gaps = 20/183 (10%)
Query: 309 TLIHHCEAVLHLRFS-NG-MMVTCSKDRSIAVWDMVSPNEITLRRVLVGHRAAVNVVDF- 365
TL H +AV ++FS NG + + S D+ I +W + + + GH+ ++ V +
Sbjct: 23 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEKTISGHKLGISDVAWS 79
Query: 366 -DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLW 422
D +VSAS D+T+K+W+ SS + ++TL GH + C + + L+VSGS D ++R+W
Sbjct: 80 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 139
Query: 423 DIECGACLRVLEGHEELVRCIRF--DAKRIVSGAYDGKIKVWNLVAALDPRAPTTTLCLR 480
D++ G CL+ L H + V + F D IVS +YDG ++W+ + CL+
Sbjct: 140 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG---------QCLK 190
Query: 481 TLV 483
TL+
Sbjct: 191 TLI 193
Score = 103 bits (256), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 122/232 (52%), Gaps = 17/232 (7%)
Query: 247 IVSGLRDNTIKVWDRVSLQCIKVLTGHTGSV--LCLQYDERVIISGSSDSTVRVWDVNTG 304
+ S D IK+W + K ++GH + + D +++S S D T+++WDV++G
Sbjct: 43 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 102
Query: 305 EMVNTLIHHCEAVLHLRFS--NGMMVTCSKDRSIAVWDMVSPNEITLRRVLVGHRAAVNV 362
+ + TL H V F+ + ++V+ S D S+ +WD+ + + + L H V+
Sbjct: 103 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL---KTLPAHSDPVSA 159
Query: 363 VDF--DEKYIVSASGDRTIKVWNTSSCEFVRTL-NGHKRGIACLQY--RDRLVVSGSSDN 417
V F D IVS+S D ++W+T+S + ++TL + ++ +++ + +++ + DN
Sbjct: 160 VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 219
Query: 418 TIRLWDIECGACLRVLEGHEELVRCIRFD-----AKRIVSGAYDGKIKVWNL 464
T++LWD G CL+ GH+ CI + K IVSG+ D + +WNL
Sbjct: 220 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 271
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 85/147 (57%), Gaps = 16/147 (10%)
Query: 342 VSPNEITLRRVLVGHRAAVNVVDF--DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRG 399
V PN L+ L GH AV+ V F + +++ S+S D+ IK+W +F +T++GHK G
Sbjct: 14 VKPN-YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG 72
Query: 400 IACLQYRD--RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDAKR--IVSGAY 455
I+ + + L+VS S D T+++WD+ G CL+ L+GH V C F+ + IVSG++
Sbjct: 73 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 132
Query: 456 DGKIKVWNLVAALDPRAPTTTLCLRTL 482
D +++W++ T CL+TL
Sbjct: 133 DESVRIWDV---------KTGKCLKTL 150
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 106/238 (44%), Gaps = 64/238 (26%)
Query: 115 DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRY-- 170
D +VSAS D+T+K+W+ SS + ++TL GH + C + + L+VSGS D ++R
Sbjct: 81 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 140
Query: 171 -----------------------RDEFQIVSSSHDDTILIWDFLNYSETPIQXXXXXXXX 207
RD IVSSS+D IWD +
Sbjct: 141 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS--------------- 185
Query: 208 XXXXXIENNWRMGKFLLQRINCRSENSKGVYCLQYDDHK--IVSGLRDNTIKVWDRVSLQ 265
G+ L I+ +++ V +++ + I++ DNT+K+WD +
Sbjct: 186 ------------GQCLKTLID---DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK 230
Query: 266 CIKVLTGHTGSVLCLQYDERV-----IISGSSDSTVRVWDVNTGEMVNTLIHHCEAVL 318
C+K TGH C+ + V I+SGS D+ V +W++ T E+V L H + V+
Sbjct: 231 CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVI 288
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 12/80 (15%)
Query: 99 LKPMLQRD-----FISLLPNFDEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQ 153
LK ++ D F+ PN KYI++A+ D T+K+W+ S + ++T GHK C+
Sbjct: 189 LKTLIDDDNPPVSFVKFSPN--GKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 246
Query: 154 YR-----DRLVVSGSSDNTI 168
+ +VSGS DN +
Sbjct: 247 ANFSVTGGKWIVSGSEDNLV 266
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 42/197 (21%), Positives = 83/197 (42%), Gaps = 56/197 (28%)
Query: 113 NFDEKYIVSASGDRTIKVWNTSSCEFVRTL-NGHKRGIACLQYRDRLVVSGSSDNTIRYR 171
N D IVS+S D ++W+T+S + ++TL + ++ +++ +Y
Sbjct: 163 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG----------KY- 211
Query: 172 DEFQIVSSSHDDTILIWDFLNYSETPIQXXXXXXXXXXXXXIENNWRMGKFLLQRINCRS 231
I++++ D+T+ +WD+ GK L ++
Sbjct: 212 ----ILAATLDNTLKLWDY---------------------------SKGKCLKTYTGHKN 240
Query: 232 ENSKGVYCLQYD-----DHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVL--CLQYDE 284
E YC+ + IVSG DN + +W+ + + ++ L GHT V+ E
Sbjct: 241 EK----YCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 296
Query: 285 RVIISGS--SDSTVRVW 299
+I S + +D T+++W
Sbjct: 297 NIIASAALENDKTIKLW 313
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 119 bits (297), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 117/209 (55%), Gaps = 13/209 (6%)
Query: 243 DDHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVLCLQYDER--VIISGSSDSTVRVWD 300
D + +VS D T+K+WD S +C+K L GH+ V C ++ + +I+SGS D +VR+WD
Sbjct: 72 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 131
Query: 301 VNTGEMVNTLIHHCEAV--LHLRFSNGMMVTCSKDRSIAVWDMVSPNEITLRRVLVGHRA 358
V TG+ + TL H + V +H ++V+ S D +WD S L+ ++
Sbjct: 132 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ--CLKTLIDDDNP 189
Query: 359 AVNVVDF--DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYR-----DRLVV 411
V+ V F + KYI++A+ D T+K+W+ S + ++T GHK C+ + +V
Sbjct: 190 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 249
Query: 412 SGSSDNTIRLWDIECGACLRVLEGHEELV 440
SGS DN + +W+++ ++ L+GH ++V
Sbjct: 250 SGSEDNLVYIWNLQTKEIVQKLQGHTDVV 278
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 101/183 (55%), Gaps = 20/183 (10%)
Query: 309 TLIHHCEAVLHLRFS-NG-MMVTCSKDRSIAVWDMVSPNEITLRRVLVGHRAAVNVVDF- 365
TL H +AV ++FS NG + + S D+ I +W + + + GH+ ++ V +
Sbjct: 14 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEKTISGHKLGISDVAWS 70
Query: 366 -DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLW 422
D +VSAS D+T+K+W+ SS + ++TL GH + C + + L+VSGS D ++R+W
Sbjct: 71 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 130
Query: 423 DIECGACLRVLEGHEELVRCIRF--DAKRIVSGAYDGKIKVWNLVAALDPRAPTTTLCLR 480
D++ G CL+ L H + V + F D IVS +YDG ++W+ + CL+
Sbjct: 131 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG---------QCLK 181
Query: 481 TLV 483
TL+
Sbjct: 182 TLI 184
Score = 103 bits (256), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 122/232 (52%), Gaps = 17/232 (7%)
Query: 247 IVSGLRDNTIKVWDRVSLQCIKVLTGHTGSV--LCLQYDERVIISGSSDSTVRVWDVNTG 304
+ S D IK+W + K ++GH + + D +++S S D T+++WDV++G
Sbjct: 34 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 93
Query: 305 EMVNTLIHHCEAVLHLRFS--NGMMVTCSKDRSIAVWDMVSPNEITLRRVLVGHRAAVNV 362
+ + TL H V F+ + ++V+ S D S+ +WD+ + + + L H V+
Sbjct: 94 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL---KTLPAHSDPVSA 150
Query: 363 VDF--DEKYIVSASGDRTIKVWNTSSCEFVRTL-NGHKRGIACLQY--RDRLVVSGSSDN 417
V F D IVS+S D ++W+T+S + ++TL + ++ +++ + +++ + DN
Sbjct: 151 VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 210
Query: 418 TIRLWDIECGACLRVLEGHEELVRCIRFD-----AKRIVSGAYDGKIKVWNL 464
T++LWD G CL+ GH+ CI + K IVSG+ D + +WNL
Sbjct: 211 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 262
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 85/147 (57%), Gaps = 16/147 (10%)
Query: 342 VSPNEITLRRVLVGHRAAVNVVDF--DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRG 399
V PN L+ L GH AV+ V F + +++ S+S D+ IK+W +F +T++GHK G
Sbjct: 5 VKPN-YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG 63
Query: 400 IACLQYRD--RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDAKR--IVSGAY 455
I+ + + L+VS S D T+++WD+ G CL+ L+GH V C F+ + IVSG++
Sbjct: 64 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 123
Query: 456 DGKIKVWNLVAALDPRAPTTTLCLRTL 482
D +++W++ T CL+TL
Sbjct: 124 DESVRIWDV---------KTGKCLKTL 141
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 106/238 (44%), Gaps = 64/238 (26%)
Query: 115 DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRY-- 170
D +VSAS D+T+K+W+ SS + ++TL GH + C + + L+VSGS D ++R
Sbjct: 72 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 131
Query: 171 -----------------------RDEFQIVSSSHDDTILIWDFLNYSETPIQXXXXXXXX 207
RD IVSSS+D IWD +
Sbjct: 132 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS--------------- 176
Query: 208 XXXXXIENNWRMGKFLLQRINCRSENSKGVYCLQYDDHK--IVSGLRDNTIKVWDRVSLQ 265
G+ L I+ +++ V +++ + I++ DNT+K+WD +
Sbjct: 177 ------------GQCLKTLID---DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK 221
Query: 266 CIKVLTGHTGSVLCLQYDERV-----IISGSSDSTVRVWDVNTGEMVNTLIHHCEAVL 318
C+K TGH C+ + V I+SGS D+ V +W++ T E+V L H + V+
Sbjct: 222 CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVI 279
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 12/80 (15%)
Query: 99 LKPMLQRD-----FISLLPNFDEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQ 153
LK ++ D F+ PN KYI++A+ D T+K+W+ S + ++T GHK C+
Sbjct: 180 LKTLIDDDNPPVSFVKFSPN--GKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 237
Query: 154 YR-----DRLVVSGSSDNTI 168
+ +VSGS DN +
Sbjct: 238 ANFSVTGGKWIVSGSEDNLV 257
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 42/197 (21%), Positives = 83/197 (42%), Gaps = 56/197 (28%)
Query: 113 NFDEKYIVSASGDRTIKVWNTSSCEFVRTL-NGHKRGIACLQYRDRLVVSGSSDNTIRYR 171
N D IVS+S D ++W+T+S + ++TL + ++ +++ +Y
Sbjct: 154 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG----------KY- 202
Query: 172 DEFQIVSSSHDDTILIWDFLNYSETPIQXXXXXXXXXXXXXIENNWRMGKFLLQRINCRS 231
I++++ D+T+ +WD+ GK L ++
Sbjct: 203 ----ILAATLDNTLKLWDY---------------------------SKGKCLKTYTGHKN 231
Query: 232 ENSKGVYCLQYD-----DHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVL--CLQYDE 284
E YC+ + IVSG DN + +W+ + + ++ L GHT V+ E
Sbjct: 232 EK----YCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 287
Query: 285 RVIISGS--SDSTVRVW 299
+I S + +D T+++W
Sbjct: 288 NIIASAALENDKTIKLW 304
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 118 bits (296), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 117/209 (55%), Gaps = 13/209 (6%)
Query: 243 DDHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVLCLQYDER--VIISGSSDSTVRVWD 300
D + +VS D T+K+WD S +C+K L GH+ V C ++ + +I+SGS D +VR+WD
Sbjct: 75 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 134
Query: 301 VNTGEMVNTLIHHCEAV--LHLRFSNGMMVTCSKDRSIAVWDMVSPNEITLRRVLVGHRA 358
V TG+ + TL H + V +H ++V+ S D +WD S L+ ++
Sbjct: 135 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ--CLKTLIDDDNP 192
Query: 359 AVNVVDF--DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYR-----DRLVV 411
V+ V F + KYI++A+ D T+K+W+ S + ++T GHK C+ + +V
Sbjct: 193 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 252
Query: 412 SGSSDNTIRLWDIECGACLRVLEGHEELV 440
SGS DN + +W+++ ++ L+GH ++V
Sbjct: 253 SGSEDNLVYIWNLQTKEIVQKLQGHTDVV 281
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 101/183 (55%), Gaps = 20/183 (10%)
Query: 309 TLIHHCEAVLHLRFS-NG-MMVTCSKDRSIAVWDMVSPNEITLRRVLVGHRAAVNVVDF- 365
TL H +AV ++FS NG + + S D+ I +W + + + GH+ ++ V +
Sbjct: 17 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEKTISGHKLGISDVAWS 73
Query: 366 -DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLW 422
D +VSAS D+T+K+W+ SS + ++TL GH + C + + L+VSGS D ++R+W
Sbjct: 74 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 133
Query: 423 DIECGACLRVLEGHEELVRCIRF--DAKRIVSGAYDGKIKVWNLVAALDPRAPTTTLCLR 480
D++ G CL+ L H + V + F D IVS +YDG ++W+ + CL+
Sbjct: 134 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG---------QCLK 184
Query: 481 TLV 483
TL+
Sbjct: 185 TLI 187
Score = 103 bits (256), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 122/232 (52%), Gaps = 17/232 (7%)
Query: 247 IVSGLRDNTIKVWDRVSLQCIKVLTGHTGSV--LCLQYDERVIISGSSDSTVRVWDVNTG 304
+ S D IK+W + K ++GH + + D +++S S D T+++WDV++G
Sbjct: 37 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 96
Query: 305 EMVNTLIHHCEAVLHLRFS--NGMMVTCSKDRSIAVWDMVSPNEITLRRVLVGHRAAVNV 362
+ + TL H V F+ + ++V+ S D S+ +WD+ + + + L H V+
Sbjct: 97 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL---KTLPAHSDPVSA 153
Query: 363 VDF--DEKYIVSASGDRTIKVWNTSSCEFVRTL-NGHKRGIACLQY--RDRLVVSGSSDN 417
V F D IVS+S D ++W+T+S + ++TL + ++ +++ + +++ + DN
Sbjct: 154 VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 213
Query: 418 TIRLWDIECGACLRVLEGHEELVRCIRFD-----AKRIVSGAYDGKIKVWNL 464
T++LWD G CL+ GH+ CI + K IVSG+ D + +WNL
Sbjct: 214 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 265
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 85/147 (57%), Gaps = 16/147 (10%)
Query: 342 VSPNEITLRRVLVGHRAAVNVVDF--DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRG 399
V PN L+ L GH AV+ V F + +++ S+S D+ IK+W +F +T++GHK G
Sbjct: 8 VKPN-YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG 66
Query: 400 IACLQYRD--RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDAKR--IVSGAY 455
I+ + + L+VS S D T+++WD+ G CL+ L+GH V C F+ + IVSG++
Sbjct: 67 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 126
Query: 456 DGKIKVWNLVAALDPRAPTTTLCLRTL 482
D +++W++ T CL+TL
Sbjct: 127 DESVRIWDV---------KTGKCLKTL 144
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 106/238 (44%), Gaps = 64/238 (26%)
Query: 115 DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRY-- 170
D +VSAS D+T+K+W+ SS + ++TL GH + C + + L+VSGS D ++R
Sbjct: 75 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 134
Query: 171 -----------------------RDEFQIVSSSHDDTILIWDFLNYSETPIQXXXXXXXX 207
RD IVSSS+D IWD +
Sbjct: 135 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS--------------- 179
Query: 208 XXXXXIENNWRMGKFLLQRINCRSENSKGVYCLQYDDHK--IVSGLRDNTIKVWDRVSLQ 265
G+ L I+ +++ V +++ + I++ DNT+K+WD +
Sbjct: 180 ------------GQCLKTLID---DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK 224
Query: 266 CIKVLTGHTGSVLCLQYDERV-----IISGSSDSTVRVWDVNTGEMVNTLIHHCEAVL 318
C+K TGH C+ + V I+SGS D+ V +W++ T E+V L H + V+
Sbjct: 225 CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVI 282
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 12/80 (15%)
Query: 99 LKPMLQRD-----FISLLPNFDEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQ 153
LK ++ D F+ PN KYI++A+ D T+K+W+ S + ++T GHK C+
Sbjct: 183 LKTLIDDDNPPVSFVKFSPN--GKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 240
Query: 154 YR-----DRLVVSGSSDNTI 168
+ +VSGS DN +
Sbjct: 241 ANFSVTGGKWIVSGSEDNLV 260
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 42/197 (21%), Positives = 83/197 (42%), Gaps = 56/197 (28%)
Query: 113 NFDEKYIVSASGDRTIKVWNTSSCEFVRTL-NGHKRGIACLQYRDRLVVSGSSDNTIRYR 171
N D IVS+S D ++W+T+S + ++TL + ++ +++ +Y
Sbjct: 157 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG----------KY- 205
Query: 172 DEFQIVSSSHDDTILIWDFLNYSETPIQXXXXXXXXXXXXXIENNWRMGKFLLQRINCRS 231
I++++ D+T+ +WD+ GK L ++
Sbjct: 206 ----ILAATLDNTLKLWDY---------------------------SKGKCLKTYTGHKN 234
Query: 232 ENSKGVYCLQYD-----DHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVL--CLQYDE 284
E YC+ + IVSG DN + +W+ + + ++ L GHT V+ E
Sbjct: 235 EK----YCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 290
Query: 285 RVIISGS--SDSTVRVW 299
+I S + +D T+++W
Sbjct: 291 NIIASAALENDKTIKLW 307
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 118 bits (296), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 117/209 (55%), Gaps = 13/209 (6%)
Query: 243 DDHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVLCLQYDER--VIISGSSDSTVRVWD 300
D + +VS D T+K+WD S +C+K L GH+ V C ++ + +I+SGS D +VR+WD
Sbjct: 82 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 141
Query: 301 VNTGEMVNTLIHHCEAV--LHLRFSNGMMVTCSKDRSIAVWDMVSPNEITLRRVLVGHRA 358
V TG+ + TL H + V +H ++V+ S D +WD S L+ ++
Sbjct: 142 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ--CLKTLIDDDNP 199
Query: 359 AVNVVDF--DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYR-----DRLVV 411
V+ V F + KYI++A+ D T+K+W+ S + ++T GHK C+ + +V
Sbjct: 200 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 259
Query: 412 SGSSDNTIRLWDIECGACLRVLEGHEELV 440
SGS DN + +W+++ ++ L+GH ++V
Sbjct: 260 SGSEDNLVYIWNLQTKEIVQKLQGHTDVV 288
Score = 106 bits (265), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 101/183 (55%), Gaps = 20/183 (10%)
Query: 309 TLIHHCEAVLHLRFS-NG-MMVTCSKDRSIAVWDMVSPNEITLRRVLVGHRAAVNVVDF- 365
TL H +AV ++FS NG + + S D+ I +W + + + GH+ ++ V +
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEKTISGHKLGISDVAWS 80
Query: 366 -DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLW 422
D +VSAS D+T+K+W+ SS + ++TL GH + C + + L+VSGS D ++R+W
Sbjct: 81 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 140
Query: 423 DIECGACLRVLEGHEELVRCIRF--DAKRIVSGAYDGKIKVWNLVAALDPRAPTTTLCLR 480
D++ G CL+ L H + V + F D IVS +YDG ++W+ + CL+
Sbjct: 141 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG---------QCLK 191
Query: 481 TLV 483
TL+
Sbjct: 192 TLI 194
Score = 103 bits (256), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 122/232 (52%), Gaps = 17/232 (7%)
Query: 247 IVSGLRDNTIKVWDRVSLQCIKVLTGHTGSV--LCLQYDERVIISGSSDSTVRVWDVNTG 304
+ S D IK+W + K ++GH + + D +++S S D T+++WDV++G
Sbjct: 44 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 103
Query: 305 EMVNTLIHHCEAVLHLRFS--NGMMVTCSKDRSIAVWDMVSPNEITLRRVLVGHRAAVNV 362
+ + TL H V F+ + ++V+ S D S+ +WD+ + + + L H V+
Sbjct: 104 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL---KTLPAHSDPVSA 160
Query: 363 VDF--DEKYIVSASGDRTIKVWNTSSCEFVRTL-NGHKRGIACLQY--RDRLVVSGSSDN 417
V F D IVS+S D ++W+T+S + ++TL + ++ +++ + +++ + DN
Sbjct: 161 VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 220
Query: 418 TIRLWDIECGACLRVLEGHEELVRCIRFD-----AKRIVSGAYDGKIKVWNL 464
T++LWD G CL+ GH+ CI + K IVSG+ D + +WNL
Sbjct: 221 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 272
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 85/147 (57%), Gaps = 16/147 (10%)
Query: 342 VSPNEITLRRVLVGHRAAVNVVDF--DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRG 399
V PN L+ L GH AV+ V F + +++ S+S D+ IK+W +F +T++GHK G
Sbjct: 15 VKPN-YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG 73
Query: 400 IACLQYRD--RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDAKR--IVSGAY 455
I+ + + L+VS S D T+++WD+ G CL+ L+GH V C F+ + IVSG++
Sbjct: 74 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 133
Query: 456 DGKIKVWNLVAALDPRAPTTTLCLRTL 482
D +++W++ T CL+TL
Sbjct: 134 DESVRIWDV---------KTGKCLKTL 151
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 106/238 (44%), Gaps = 64/238 (26%)
Query: 115 DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRY-- 170
D +VSAS D+T+K+W+ SS + ++TL GH + C + + L+VSGS D ++R
Sbjct: 82 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 141
Query: 171 -----------------------RDEFQIVSSSHDDTILIWDFLNYSETPIQXXXXXXXX 207
RD IVSSS+D IWD +
Sbjct: 142 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS--------------- 186
Query: 208 XXXXXIENNWRMGKFLLQRINCRSENSKGVYCLQYDDHK--IVSGLRDNTIKVWDRVSLQ 265
G+ L I+ +++ V +++ + I++ DNT+K+WD +
Sbjct: 187 ------------GQCLKTLID---DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK 231
Query: 266 CIKVLTGHTGSVLCLQYDERV-----IISGSSDSTVRVWDVNTGEMVNTLIHHCEAVL 318
C+K TGH C+ + V I+SGS D+ V +W++ T E+V L H + V+
Sbjct: 232 CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVI 289
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 12/80 (15%)
Query: 99 LKPMLQRD-----FISLLPNFDEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQ 153
LK ++ D F+ PN KYI++A+ D T+K+W+ S + ++T GHK C+
Sbjct: 190 LKTLIDDDNPPVSFVKFSPN--GKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 247
Query: 154 YR-----DRLVVSGSSDNTI 168
+ +VSGS DN +
Sbjct: 248 ANFSVTGGKWIVSGSEDNLV 267
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 42/197 (21%), Positives = 83/197 (42%), Gaps = 56/197 (28%)
Query: 113 NFDEKYIVSASGDRTIKVWNTSSCEFVRTL-NGHKRGIACLQYRDRLVVSGSSDNTIRYR 171
N D IVS+S D ++W+T+S + ++TL + ++ +++ +Y
Sbjct: 164 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG----------KY- 212
Query: 172 DEFQIVSSSHDDTILIWDFLNYSETPIQXXXXXXXXXXXXXIENNWRMGKFLLQRINCRS 231
I++++ D+T+ +WD+ GK L ++
Sbjct: 213 ----ILAATLDNTLKLWDY---------------------------SKGKCLKTYTGHKN 241
Query: 232 ENSKGVYCLQYD-----DHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVL--CLQYDE 284
E YC+ + IVSG DN + +W+ + + ++ L GHT V+ E
Sbjct: 242 EK----YCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 297
Query: 285 RVIISGS--SDSTVRVW 299
+I S + +D T+++W
Sbjct: 298 NIIASAALENDKTIKLW 314
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 118 bits (296), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 117/209 (55%), Gaps = 13/209 (6%)
Query: 243 DDHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVLCLQYDER--VIISGSSDSTVRVWD 300
D + +VS D T+K+WD S +C+K L GH+ V C ++ + +I+SGS D +VR+WD
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 301 VNTGEMVNTLIHHCEAV--LHLRFSNGMMVTCSKDRSIAVWDMVSPNEITLRRVLVGHRA 358
V TG+ + TL H + V +H ++V+ S D +WD S L+ ++
Sbjct: 139 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ--CLKTLIDDDNP 196
Query: 359 AVNVVDF--DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYR-----DRLVV 411
V+ V F + KYI++A+ D T+K+W+ S + ++T GHK C+ + +V
Sbjct: 197 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 256
Query: 412 SGSSDNTIRLWDIECGACLRVLEGHEELV 440
SGS DN + +W+++ ++ L+GH ++V
Sbjct: 257 SGSEDNLVYIWNLQTKEIVQKLQGHTDVV 285
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 101/183 (55%), Gaps = 20/183 (10%)
Query: 309 TLIHHCEAVLHLRFS-NG-MMVTCSKDRSIAVWDMVSPNEITLRRVLVGHRAAVNVVDF- 365
TL H +AV ++FS NG + + S D+ I +W + + + GH+ ++ V +
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEKTISGHKLGISDVAWS 77
Query: 366 -DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLW 422
D +VSAS D+T+K+W+ SS + ++TL GH + C + + L+VSGS D ++R+W
Sbjct: 78 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Query: 423 DIECGACLRVLEGHEELVRCIRF--DAKRIVSGAYDGKIKVWNLVAALDPRAPTTTLCLR 480
D++ G CL+ L H + V + F D IVS +YDG ++W+ + CL+
Sbjct: 138 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG---------QCLK 188
Query: 481 TLV 483
TL+
Sbjct: 189 TLI 191
Score = 102 bits (255), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 122/232 (52%), Gaps = 17/232 (7%)
Query: 247 IVSGLRDNTIKVWDRVSLQCIKVLTGHTGSV--LCLQYDERVIISGSSDSTVRVWDVNTG 304
+ S D IK+W + K ++GH + + D +++S S D T+++WDV++G
Sbjct: 41 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 100
Query: 305 EMVNTLIHHCEAVLHLRFS--NGMMVTCSKDRSIAVWDMVSPNEITLRRVLVGHRAAVNV 362
+ + TL H V F+ + ++V+ S D S+ +WD+ + + + L H V+
Sbjct: 101 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL---KTLPAHSDPVSA 157
Query: 363 VDF--DEKYIVSASGDRTIKVWNTSSCEFVRTL-NGHKRGIACLQY--RDRLVVSGSSDN 417
V F D IVS+S D ++W+T+S + ++TL + ++ +++ + +++ + DN
Sbjct: 158 VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 217
Query: 418 TIRLWDIECGACLRVLEGHEELVRCIRFD-----AKRIVSGAYDGKIKVWNL 464
T++LWD G CL+ GH+ CI + K IVSG+ D + +WNL
Sbjct: 218 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 269
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 86/149 (57%), Gaps = 16/149 (10%)
Query: 340 DMVSPNEITLRRVLVGHRAAVNVVDF--DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHK 397
+ V PN L+ L GH AV+ V F + +++ S+S D+ IK+W +F +T++GHK
Sbjct: 10 EFVKPN-YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK 68
Query: 398 RGIACLQYRD--RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDAKR--IVSG 453
GI+ + + L+VS S D T+++WD+ G CL+ L+GH V C F+ + IVSG
Sbjct: 69 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 128
Query: 454 AYDGKIKVWNLVAALDPRAPTTTLCLRTL 482
++D +++W++ T CL+TL
Sbjct: 129 SFDESVRIWDV---------KTGKCLKTL 148
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 106/238 (44%), Gaps = 64/238 (26%)
Query: 115 DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRY-- 170
D +VSAS D+T+K+W+ SS + ++TL GH + C + + L+VSGS D ++R
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 171 -----------------------RDEFQIVSSSHDDTILIWDFLNYSETPIQXXXXXXXX 207
RD IVSSS+D IWD +
Sbjct: 139 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS--------------- 183
Query: 208 XXXXXIENNWRMGKFLLQRINCRSENSKGVYCLQY--DDHKIVSGLRDNTIKVWDRVSLQ 265
G+ L I+ +++ V +++ + I++ DNT+K+WD +
Sbjct: 184 ------------GQCLKTLID---DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK 228
Query: 266 CIKVLTGHTGSVLCLQYDERV-----IISGSSDSTVRVWDVNTGEMVNTLIHHCEAVL 318
C+K TGH C+ + V I+SGS D+ V +W++ T E+V L H + V+
Sbjct: 229 CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVI 286
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 12/80 (15%)
Query: 99 LKPMLQRD-----FISLLPNFDEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQ 153
LK ++ D F+ PN KYI++A+ D T+K+W+ S + ++T GHK C+
Sbjct: 187 LKTLIDDDNPPVSFVKFSPN--GKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 244
Query: 154 YR-----DRLVVSGSSDNTI 168
+ +VSGS DN +
Sbjct: 245 ANFSVTGGKWIVSGSEDNLV 264
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 41/197 (20%), Positives = 83/197 (42%), Gaps = 56/197 (28%)
Query: 113 NFDEKYIVSASGDRTIKVWNTSSCEFVRTL-NGHKRGIACLQYRDRLVVSGSSDNTIRYR 171
N D IVS+S D ++W+T+S + ++TL + ++ +++ +Y
Sbjct: 161 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG----------KY- 209
Query: 172 DEFQIVSSSHDDTILIWDFLNYSETPIQXXXXXXXXXXXXXIENNWRMGKFLLQRINCRS 231
I++++ D+T+ +WD+ GK L ++
Sbjct: 210 ----ILAATLDNTLKLWDY---------------------------SKGKCLKTYTGHKN 238
Query: 232 ENSKGVYCLQYD-----DHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVL--CLQYDE 284
E YC+ + IVSG DN + +W+ + + ++ L GHT V+ E
Sbjct: 239 EK----YCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 294
Query: 285 RVIISGS--SDSTVRVW 299
+I S + +D T++++
Sbjct: 295 NIIASAALENDKTIKLY 311
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 118 bits (296), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 117/209 (55%), Gaps = 13/209 (6%)
Query: 243 DDHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVLCLQYDER--VIISGSSDSTVRVWD 300
D + +VS D T+K+WD S +C+K L GH+ V C ++ + +I+SGS D +VR+WD
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 301 VNTGEMVNTLIHHCEAV--LHLRFSNGMMVTCSKDRSIAVWDMVSPNEITLRRVLVGHRA 358
V TG+ + TL H + V +H ++V+ S D +WD S L+ ++
Sbjct: 139 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ--CLKTLIDDDNP 196
Query: 359 AVNVVDF--DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYR-----DRLVV 411
V+ V F + KYI++A+ D T+K+W+ S + ++T GHK C+ + +V
Sbjct: 197 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 256
Query: 412 SGSSDNTIRLWDIECGACLRVLEGHEELV 440
SGS DN + +W+++ ++ L+GH ++V
Sbjct: 257 SGSEDNLVYIWNLQTKEIVQKLQGHTDVV 285
Score = 106 bits (264), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 101/183 (55%), Gaps = 20/183 (10%)
Query: 309 TLIHHCEAVLHLRFS-NG-MMVTCSKDRSIAVWDMVSPNEITLRRVLVGHRAAVNVVDF- 365
TL H +AV ++FS NG + + S D+ I +W + + + GH+ ++ V +
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEKTISGHKLGISDVAWS 77
Query: 366 -DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLW 422
D +VSAS D+T+K+W+ SS + ++TL GH + C + + L+VSGS D ++R+W
Sbjct: 78 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Query: 423 DIECGACLRVLEGHEELVRCIRF--DAKRIVSGAYDGKIKVWNLVAALDPRAPTTTLCLR 480
D++ G CL+ L H + V + F D IVS +YDG ++W+ + CL+
Sbjct: 138 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG---------QCLK 188
Query: 481 TLV 483
TL+
Sbjct: 189 TLI 191
Score = 102 bits (255), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 122/232 (52%), Gaps = 17/232 (7%)
Query: 247 IVSGLRDNTIKVWDRVSLQCIKVLTGHTGSV--LCLQYDERVIISGSSDSTVRVWDVNTG 304
+ S D IK+W + K ++GH + + D +++S S D T+++WDV++G
Sbjct: 41 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 100
Query: 305 EMVNTLIHHCEAVLHLRFS--NGMMVTCSKDRSIAVWDMVSPNEITLRRVLVGHRAAVNV 362
+ + TL H V F+ + ++V+ S D S+ +WD+ + + + L H V+
Sbjct: 101 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL---KTLPAHSDPVSA 157
Query: 363 VDF--DEKYIVSASGDRTIKVWNTSSCEFVRTL-NGHKRGIACLQY--RDRLVVSGSSDN 417
V F D IVS+S D ++W+T+S + ++TL + ++ +++ + +++ + DN
Sbjct: 158 VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 217
Query: 418 TIRLWDIECGACLRVLEGHEELVRCIRFD-----AKRIVSGAYDGKIKVWNL 464
T++LWD G CL+ GH+ CI + K IVSG+ D + +WNL
Sbjct: 218 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 269
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 86/149 (57%), Gaps = 16/149 (10%)
Query: 340 DMVSPNEITLRRVLVGHRAAVNVVDF--DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHK 397
+ V PN L+ L GH AV+ V F + +++ S+S D+ IK+W +F +T++GHK
Sbjct: 10 EFVKPN-YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK 68
Query: 398 RGIACLQYRD--RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDAKR--IVSG 453
GI+ + + L+VS S D T+++WD+ G CL+ L+GH V C F+ + IVSG
Sbjct: 69 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 128
Query: 454 AYDGKIKVWNLVAALDPRAPTTTLCLRTL 482
++D +++W++ T CL+TL
Sbjct: 129 SFDESVRIWDV---------KTGKCLKTL 148
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 106/238 (44%), Gaps = 64/238 (26%)
Query: 115 DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRY-- 170
D +VSAS D+T+K+W+ SS + ++TL GH + C + + L+VSGS D ++R
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 171 -----------------------RDEFQIVSSSHDDTILIWDFLNYSETPIQXXXXXXXX 207
RD IVSSS+D IWD +
Sbjct: 139 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS--------------- 183
Query: 208 XXXXXIENNWRMGKFLLQRINCRSENSKGVYCLQY--DDHKIVSGLRDNTIKVWDRVSLQ 265
G+ L I+ +++ V +++ + I++ DNT+K+WD +
Sbjct: 184 ------------GQCLKTLID---DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK 228
Query: 266 CIKVLTGHTGSVLCLQYDERV-----IISGSSDSTVRVWDVNTGEMVNTLIHHCEAVL 318
C+K TGH C+ + V I+SGS D+ V +W++ T E+V L H + V+
Sbjct: 229 CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVI 286
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 12/80 (15%)
Query: 99 LKPMLQRD-----FISLLPNFDEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQ 153
LK ++ D F+ PN KYI++A+ D T+K+W+ S + ++T GHK C+
Sbjct: 187 LKTLIDDDNPPVSFVKFSPN--GKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 244
Query: 154 YR-----DRLVVSGSSDNTI 168
+ +VSGS DN +
Sbjct: 245 ANFSVTGGKWIVSGSEDNLV 264
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 41/197 (20%), Positives = 83/197 (42%), Gaps = 56/197 (28%)
Query: 113 NFDEKYIVSASGDRTIKVWNTSSCEFVRTL-NGHKRGIACLQYRDRLVVSGSSDNTIRYR 171
N D IVS+S D ++W+T+S + ++TL + ++ +++ +Y
Sbjct: 161 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG----------KY- 209
Query: 172 DEFQIVSSSHDDTILIWDFLNYSETPIQXXXXXXXXXXXXXIENNWRMGKFLLQRINCRS 231
I++++ D+T+ +WD+ GK L ++
Sbjct: 210 ----ILAATLDNTLKLWDY---------------------------SKGKCLKTYTGHKN 238
Query: 232 ENSKGVYCLQYD-----DHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVL--CLQYDE 284
E YC+ + IVSG DN + +W+ + + ++ L GHT V+ E
Sbjct: 239 EK----YCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 294
Query: 285 RVIISGS--SDSTVRVW 299
+I S + +D T++++
Sbjct: 295 NIIASAALENDKTIKLF 311
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 118 bits (296), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 117/209 (55%), Gaps = 13/209 (6%)
Query: 243 DDHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVLCLQYDER--VIISGSSDSTVRVWD 300
D + +VS D T+K+WD S +C+K L GH+ V C ++ + +I+SGS D +VR+WD
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 301 VNTGEMVNTLIHHCEAV--LHLRFSNGMMVTCSKDRSIAVWDMVSPNEITLRRVLVGHRA 358
V TG+ + TL H + V +H ++V+ S D +WD S L+ ++
Sbjct: 139 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ--CLKTLIDDDNP 196
Query: 359 AVNVVDF--DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYR-----DRLVV 411
V+ V F + KYI++A+ D T+K+W+ S + ++T GHK C+ + +V
Sbjct: 197 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 256
Query: 412 SGSSDNTIRLWDIECGACLRVLEGHEELV 440
SGS DN + +W+++ ++ L+GH ++V
Sbjct: 257 SGSEDNLVYIWNLQTKEIVQKLQGHTDVV 285
Score = 105 bits (262), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 100/183 (54%), Gaps = 20/183 (10%)
Query: 309 TLIHHCEAVLHLRFS-NG-MMVTCSKDRSIAVWDMVSPNEITLRRVLVGHRAAVNVVDF- 365
TL H +AV ++FS NG + S D+ I +W + + + GH+ ++ V +
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAY---DGKFEKTISGHKLGISDVAWS 77
Query: 366 -DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLW 422
D +VSAS D+T+K+W+ SS + ++TL GH + C + + L+VSGS D ++R+W
Sbjct: 78 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Query: 423 DIECGACLRVLEGHEELVRCIRF--DAKRIVSGAYDGKIKVWNLVAALDPRAPTTTLCLR 480
D++ G CL+ L H + V + F D IVS +YDG ++W+ + CL+
Sbjct: 138 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG---------QCLK 188
Query: 481 TLV 483
TL+
Sbjct: 189 TLI 191
Score = 101 bits (252), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 120/226 (53%), Gaps = 17/226 (7%)
Query: 253 DNTIKVWDRVSLQCIKVLTGHTGSV--LCLQYDERVIISGSSDSTVRVWDVNTGEMVNTL 310
D IK+W + K ++GH + + D +++S S D T+++WDV++G+ + TL
Sbjct: 47 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 106
Query: 311 IHHCEAVLHLRFS--NGMMVTCSKDRSIAVWDMVSPNEITLRRVLVGHRAAVNVVDF--D 366
H V F+ + ++V+ S D S+ +WD+ + + + L H V+ V F D
Sbjct: 107 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL---KTLPAHSDPVSAVHFNRD 163
Query: 367 EKYIVSASGDRTIKVWNTSSCEFVRTL-NGHKRGIACLQY--RDRLVVSGSSDNTIRLWD 423
IVS+S D ++W+T+S + ++TL + ++ +++ + +++ + DNT++LWD
Sbjct: 164 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 223
Query: 424 IECGACLRVLEGHEELVRCIRFD-----AKRIVSGAYDGKIKVWNL 464
G CL+ GH+ CI + K IVSG+ D + +WNL
Sbjct: 224 YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 269
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 86/149 (57%), Gaps = 16/149 (10%)
Query: 340 DMVSPNEITLRRVLVGHRAAVNVVDF--DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHK 397
+ V PN L+ L GH AV+ V F + +++ ++S D+ IK+W +F +T++GHK
Sbjct: 10 EFVKPN-YALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHK 68
Query: 398 RGIACLQYRD--RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDAKR--IVSG 453
GI+ + + L+VS S D T+++WD+ G CL+ L+GH V C F+ + IVSG
Sbjct: 69 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 128
Query: 454 AYDGKIKVWNLVAALDPRAPTTTLCLRTL 482
++D +++W++ T CL+TL
Sbjct: 129 SFDESVRIWDV---------KTGKCLKTL 148
Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 108/206 (52%), Gaps = 14/206 (6%)
Query: 269 VLTGHTGSVLCLQY--DERVIISGSSDSTVRVWDVNTGEMVNTLIHHCEAVLHLRFS--N 324
L GHT +V +++ + + + S+D +++W G+ T+ H + + +S +
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 325 GMMVTCSKDRSIAVWDMVSPNEITLRRVLVGHRAAVNVVDFDEK--YIVSASGDRTIKVW 382
++V+ S D+++ +WD+ S + + L GH V +F+ + IVS S D ++++W
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCL---KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Query: 383 NTSSCEFVRTLNGHKRGIACLQY-RD-RLVVSGSSDNTIRLWDIECGACLRVL-EGHEEL 439
+ + + ++TL H ++ + + RD L+VS S D R+WD G CL+ L +
Sbjct: 138 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 197
Query: 440 VRCIRF--DAKRIVSGAYDGKIKVWN 463
V ++F + K I++ D +K+W+
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWD 223
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 106/238 (44%), Gaps = 64/238 (26%)
Query: 115 DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRY-- 170
D +VSAS D+T+K+W+ SS + ++TL GH + C + + L+VSGS D ++R
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 171 -----------------------RDEFQIVSSSHDDTILIWDFLNYSETPIQXXXXXXXX 207
RD IVSSS+D IWD +
Sbjct: 139 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS--------------- 183
Query: 208 XXXXXIENNWRMGKFLLQRINCRSENSKGVYCLQY--DDHKIVSGLRDNTIKVWDRVSLQ 265
G+ L I+ +++ V +++ + I++ DNT+K+WD +
Sbjct: 184 ------------GQCLKTLID---DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK 228
Query: 266 CIKVLTGHTGSVLCLQYDERV-----IISGSSDSTVRVWDVNTGEMVNTLIHHCEAVL 318
C+K TGH C+ + V I+SGS D+ V +W++ T E+V L H + V+
Sbjct: 229 CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVI 286
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 12/80 (15%)
Query: 99 LKPMLQRD-----FISLLPNFDEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQ 153
LK ++ D F+ PN KYI++A+ D T+K+W+ S + ++T GHK C+
Sbjct: 187 LKTLIDDDNPPVSFVKFSPN--GKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 244
Query: 154 YR-----DRLVVSGSSDNTI 168
+ +VSGS DN +
Sbjct: 245 ANFSVTGGKWIVSGSEDNLV 264
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 42/197 (21%), Positives = 83/197 (42%), Gaps = 56/197 (28%)
Query: 113 NFDEKYIVSASGDRTIKVWNTSSCEFVRTL-NGHKRGIACLQYRDRLVVSGSSDNTIRYR 171
N D IVS+S D ++W+T+S + ++TL + ++ +++ +Y
Sbjct: 161 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG----------KY- 209
Query: 172 DEFQIVSSSHDDTILIWDFLNYSETPIQXXXXXXXXXXXXXIENNWRMGKFLLQRINCRS 231
I++++ D+T+ +WD+ GK L ++
Sbjct: 210 ----ILAATLDNTLKLWDY---------------------------SKGKCLKTYTGHKN 238
Query: 232 ENSKGVYCLQYD-----DHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVL--CLQYDE 284
E YC+ + IVSG DN + +W+ + + ++ L GHT V+ E
Sbjct: 239 EK----YCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 294
Query: 285 RVIISGS--SDSTVRVW 299
+I S + +D T+++W
Sbjct: 295 NIIASAALENDKTIKLW 311
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 118 bits (295), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 126/235 (53%), Gaps = 17/235 (7%)
Query: 243 DDHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVLCLQYDER--VIISGSSDSTVRVWD 300
D + +VS D T+K+WD S +C+K L GH+ V C ++ + +I+SGS D +VR+WD
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 301 VNTGEMVNTLIHHCEAV--LHLRFSNGMMVTCSKDRSIAVWDMVSPNEITLRRVLVGHRA 358
V TG + TL H + V +H ++V+ S D +WD S L+ ++
Sbjct: 139 VKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ--CLKTLIDDDNP 196
Query: 359 AVNVVDF--DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYR-----DRLVV 411
V+ V F + KYI++A+ D T+K+W+ S + ++T GHK C+ + +V
Sbjct: 197 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 256
Query: 412 SGSSDNTIRLWDIECGACLRVLEGHEELVRCIR-FDAKRIVSGAY---DGKIKVW 462
SGS DN + +W+++ ++ L+GH ++V + I++ A D IK+W
Sbjct: 257 SGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 103/186 (55%), Gaps = 20/186 (10%)
Query: 306 MVNTLIHHCEAVLHLRFS-NG-MMVTCSKDRSIAVWDMVSPNEITLRRVLVGHRAAVNVV 363
++ TL H +AV ++FS NG + + S D+ I +W + + + GH+ ++ V
Sbjct: 18 LMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEKTISGHKLGISDV 74
Query: 364 DF--DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTI 419
+ D +VSAS D+T+K+W+ SS + ++TL GH + C + + L+VSGS D ++
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 134
Query: 420 RLWDIECGACLRVLEGHEELVRCIRF--DAKRIVSGAYDGKIKVWNLVAALDPRAPTTTL 477
R+WD++ G CL+ L H + V + F D IVS +YDG ++W+ +
Sbjct: 135 RIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG---------Q 185
Query: 478 CLRTLV 483
CL+TL+
Sbjct: 186 CLKTLI 191
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 121/232 (52%), Gaps = 17/232 (7%)
Query: 247 IVSGLRDNTIKVWDRVSLQCIKVLTGHTGSV--LCLQYDERVIISGSSDSTVRVWDVNTG 304
+ S D IK+W + K ++GH + + D +++S S D T+++WDV++G
Sbjct: 41 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 100
Query: 305 EMVNTLIHHCEAVLHLRFS--NGMMVTCSKDRSIAVWDMVSPNEITLRRVLVGHRAAVNV 362
+ + TL H V F+ + ++V+ S D S+ +WD+ + + L H V+
Sbjct: 101 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG---MCLKTLPAHSDPVSA 157
Query: 363 VDF--DEKYIVSASGDRTIKVWNTSSCEFVRTL-NGHKRGIACLQY--RDRLVVSGSSDN 417
V F D IVS+S D ++W+T+S + ++TL + ++ +++ + +++ + DN
Sbjct: 158 VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 217
Query: 418 TIRLWDIECGACLRVLEGHEELVRCIRFD-----AKRIVSGAYDGKIKVWNL 464
T++LWD G CL+ GH+ CI + K IVSG+ D + +WNL
Sbjct: 218 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNL 269
Score = 98.2 bits (243), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 85/147 (57%), Gaps = 16/147 (10%)
Query: 342 VSPNEITLRRVLVGHRAAVNVVDF--DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRG 399
V PN L L GH AV+ V F + +++ S+S D+ IK+W +F +T++GHK G
Sbjct: 12 VKPN-YALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG 70
Query: 400 IACLQYRD--RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDAKR--IVSGAY 455
I+ + + L+VS S D T+++WD+ G CL+ L+GH V C F+ + IVSG++
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 130
Query: 456 DGKIKVWNLVAALDPRAPTTTLCLRTL 482
D +++W++ T +CL+TL
Sbjct: 131 DESVRIWDV---------KTGMCLKTL 148
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 106/238 (44%), Gaps = 64/238 (26%)
Query: 115 DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRY-- 170
D +VSAS D+T+K+W+ SS + ++TL GH + C + + L+VSGS D ++R
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 171 -----------------------RDEFQIVSSSHDDTILIWDFLNYSETPIQXXXXXXXX 207
RD IVSSS+D IWD +
Sbjct: 139 VKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS--------------- 183
Query: 208 XXXXXIENNWRMGKFLLQRINCRSENSKGVYCLQYDDHK--IVSGLRDNTIKVWDRVSLQ 265
G+ L I+ +++ V +++ + I++ DNT+K+WD +
Sbjct: 184 ------------GQCLKTLID---DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK 228
Query: 266 CIKVLTGHTGSVLCLQYDERV-----IISGSSDSTVRVWDVNTGEMVNTLIHHCEAVL 318
C+K TGH C+ + V I+SGS D+ V +W++ T E+V L H + V+
Sbjct: 229 CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVI 286
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 12/80 (15%)
Query: 99 LKPMLQRD-----FISLLPNFDEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQ 153
LK ++ D F+ PN KYI++A+ D T+K+W+ S + ++T GHK C+
Sbjct: 187 LKTLIDDDNPPVSFVKFSPN--GKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 244
Query: 154 YR-----DRLVVSGSSDNTI 168
+ +VSGS DN +
Sbjct: 245 ANFSVTGGKWIVSGSEDNMV 264
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 42/197 (21%), Positives = 83/197 (42%), Gaps = 56/197 (28%)
Query: 113 NFDEKYIVSASGDRTIKVWNTSSCEFVRTL-NGHKRGIACLQYRDRLVVSGSSDNTIRYR 171
N D IVS+S D ++W+T+S + ++TL + ++ +++ +Y
Sbjct: 161 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG----------KY- 209
Query: 172 DEFQIVSSSHDDTILIWDFLNYSETPIQXXXXXXXXXXXXXIENNWRMGKFLLQRINCRS 231
I++++ D+T+ +WD+ GK L ++
Sbjct: 210 ----ILAATLDNTLKLWDY---------------------------SKGKCLKTYTGHKN 238
Query: 232 ENSKGVYCLQYD-----DHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVL--CLQYDE 284
E YC+ + IVSG DN + +W+ + + ++ L GHT V+ E
Sbjct: 239 EK----YCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 294
Query: 285 RVIISGS--SDSTVRVW 299
+I S + +D T+++W
Sbjct: 295 NIIASAALENDKTIKLW 311
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 115 bits (289), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 125/235 (53%), Gaps = 17/235 (7%)
Query: 243 DDHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVLCLQYDER--VIISGSSDSTVRVWD 300
D + +VS D T+K+WD S +C+K L GH+ V C ++ + +I+SGS D +VR+WD
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 301 VNTGEMVNTLIHHCEAV--LHLRFSNGMMVTCSKDRSIAVWDMVSPNEITLRRVLVGHRA 358
V TG + TL H + V +H ++V+ S D +WD S L+ ++
Sbjct: 139 VKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ--CLKTLIDDDNP 196
Query: 359 AVNVVDF--DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYR-----DRLVV 411
V+ V F + KYI++A+ D +K+W+ S + ++T GHK C+ + +V
Sbjct: 197 PVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 256
Query: 412 SGSSDNTIRLWDIECGACLRVLEGHEELVRCIR-FDAKRIVSGAY---DGKIKVW 462
SGS DN + +W+++ ++ L+GH ++V + I++ A D IK+W
Sbjct: 257 SGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 103/186 (55%), Gaps = 20/186 (10%)
Query: 306 MVNTLIHHCEAVLHLRFS-NG-MMVTCSKDRSIAVWDMVSPNEITLRRVLVGHRAAVNVV 363
++ TL H +AV ++FS NG + + S D+ I +W + + + GH+ ++ V
Sbjct: 18 LMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEKTISGHKLGISDV 74
Query: 364 DF--DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTI 419
+ D +VSAS D+T+K+W+ SS + ++TL GH + C + + L+VSGS D ++
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESV 134
Query: 420 RLWDIECGACLRVLEGHEELVRCIRF--DAKRIVSGAYDGKIKVWNLVAALDPRAPTTTL 477
R+WD++ G CL+ L H + V + F D IVS +YDG ++W+ +
Sbjct: 135 RIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG---------Q 185
Query: 478 CLRTLV 483
CL+TL+
Sbjct: 186 CLKTLI 191
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 120/232 (51%), Gaps = 17/232 (7%)
Query: 247 IVSGLRDNTIKVWDRVSLQCIKVLTGHTGSV--LCLQYDERVIISGSSDSTVRVWDVNTG 304
+ S D IK+W + K ++GH + + D +++S S D T+++WDV++G
Sbjct: 41 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 100
Query: 305 EMVNTLIHHCEAVLHLRFS--NGMMVTCSKDRSIAVWDMVSPNEITLRRVLVGHRAAVNV 362
+ + TL H V F+ + ++V+ S D S+ +WD+ + + L H V+
Sbjct: 101 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG---MCLKTLPAHSDPVSA 157
Query: 363 VDF--DEKYIVSASGDRTIKVWNTSSCEFVRTL-NGHKRGIACLQY--RDRLVVSGSSDN 417
V F D IVS+S D ++W+T+S + ++TL + ++ +++ + +++ + DN
Sbjct: 158 VHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 217
Query: 418 TIRLWDIECGACLRVLEGHEELVRCIRFD-----AKRIVSGAYDGKIKVWNL 464
++LWD G CL+ GH+ CI + K IVSG+ D + +WNL
Sbjct: 218 DLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNL 269
Score = 99.4 bits (246), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 89/336 (26%), Positives = 151/336 (44%), Gaps = 69/336 (20%)
Query: 108 ISLLPNFDEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNT 167
+ PN +++ S+S D+ IK+W +F +T++GHK GI+ + + SSD+
Sbjct: 32 VKFSPN--GEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW--------SSDSN 81
Query: 168 IRYRDEFQIVSSSHDDTILIWDFLNYSETPIQXXXXXXXXXXXXXIENNWRMGKFLLQRI 227
+ +VS+S D T+ IWD GK L
Sbjct: 82 L-------LVSASDDKTLKIWDV---------------------------SSGKCL---- 103
Query: 228 NCRSENSKGVYCLQYDDHK--IVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVLCLQY--D 283
+S V+C ++ IVSG D ++++WD + C+K L H+ V + + D
Sbjct: 104 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRD 163
Query: 284 ERVIISGSSDSTVRVWDVNTGEMVNTLI-HHCEAVLHLRFS-NG-MMVTCSKDRSIAVWD 340
+I+S S D R+WD +G+ + TLI V ++FS NG ++ + D + +WD
Sbjct: 164 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWD 223
Query: 341 MVSPNEITLRRVLVGHRAA-----VNVVDFDEKYIVSASGDRTIKVWNTSSCEFVRTLNG 395
++ + GH+ N K+IVS S D + +WN + E V+ L G
Sbjct: 224 Y---SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQG 280
Query: 396 HKRGI---ACLQYRDRLVVSGS--SDNTIRLWDIEC 426
H + AC + ++ S + +D TI+LW +C
Sbjct: 281 HTDVVISTAC-HPTENIIASAALENDKTIKLWKSDC 315
Score = 98.2 bits (243), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 85/147 (57%), Gaps = 16/147 (10%)
Query: 342 VSPNEITLRRVLVGHRAAVNVVDF--DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRG 399
V PN L L GH AV+ V F + +++ S+S D+ IK+W +F +T++GHK G
Sbjct: 12 VKPN-YALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG 70
Query: 400 IACLQYRD--RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDAKR--IVSGAY 455
I+ + + L+VS S D T+++WD+ G CL+ L+GH V C F+ + IVSG++
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 130
Query: 456 DGKIKVWNLVAALDPRAPTTTLCLRTL 482
D +++W++ T +CL+TL
Sbjct: 131 DESVRIWDV---------KTGMCLKTL 148
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 12/80 (15%)
Query: 99 LKPMLQRD-----FISLLPNFDEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQ 153
LK ++ D F+ PN KYI++A+ D +K+W+ S + ++T GHK C+
Sbjct: 187 LKTLIDDDNPPVSFVKFSPN--GKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIF 244
Query: 154 YR-----DRLVVSGSSDNTI 168
+ +VSGS DN +
Sbjct: 245 ANFSVTGGKWIVSGSEDNMV 264
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 109 bits (272), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 77/234 (32%), Positives = 119/234 (50%), Gaps = 17/234 (7%)
Query: 247 IVSGLRDNTIKVW-----DRVSLQCIKVLTGHTGSV--LCLQYDERVIISGSSDSTVRVW 299
IVS RD +I +W D+ + LTGH+ V + L D + +SGS D +R+W
Sbjct: 398 IVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLW 457
Query: 300 DVNTGEMVNTLIHHCEAVLHLRFS--NGMMVTCSKDRSIAVWDMVSPNEITLRRVLVGHR 357
D+ G + H + VL + FS N +V+ S+DR+I +W+ + + T+ GHR
Sbjct: 458 DLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHR 517
Query: 358 AAVNVVDFD----EKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYR--DRLVV 411
V+ V F + IVSAS D+T+KVWN S+C+ TL GH ++ + L
Sbjct: 518 DWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCA 577
Query: 412 SGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDAKRI-VSGAYDGKIKVWNL 464
SG D + LWD+ G L LE + ++ + F R + A + IK+W+L
Sbjct: 578 SGGKDGVVLLWDLAEGKKLYSLEAN-SVIHALCFSPNRYWLCAATEHGIKIWDL 630
Score = 75.1 bits (183), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 81/153 (52%), Gaps = 15/153 (9%)
Query: 326 MMVTCSKDRSIAVWDMVSPNEI--TLRRVLVGHRAAVN--VVDFDEKYIVSASGDRTIKV 381
++V+ S+D+SI +W + ++ +R L GH V V+ D ++ +S S D +++
Sbjct: 397 IIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRL 456
Query: 382 WNTSSCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVL----EG 435
W+ ++ R GH + + + + +R +VS S D TI+LW+ G C + EG
Sbjct: 457 WDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNT-LGECKYTISEGGEG 515
Query: 436 HEELVRCIRFDAK----RIVSGAYDGKIKVWNL 464
H + V C+RF IVS ++D +KVWNL
Sbjct: 516 HRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNL 548
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 62/259 (23%), Positives = 113/259 (43%), Gaps = 37/259 (14%)
Query: 239 CLQYDDHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVLCLQY--DERVIISGSSDSTV 296
L D +SG D +++WD + + GHT VL + + D R I+S S D T+
Sbjct: 437 VLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTI 496
Query: 297 RVWDVNTGEMVNTLIHHCEA----VLHLRFSNGMM----VTCSKDRSIAVWDMVSPNEIT 348
++W+ GE T+ E V +RFS + V+ S D+++ VW++ +
Sbjct: 497 KLWNT-LGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNL---SNCK 552
Query: 349 LRRVLVGHRAAVNVVDFDEKYIVSASG--DRTIKVWNTSSCEFVRTLNGHKRGIACLQYR 406
LR L GH V+ V + ASG D + +W+ + + + +L + A
Sbjct: 553 LRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSP 612
Query: 407 DRLVVSGSSDNTIRLWDIECGACLRVLE-----------------GHEELVRCIRF---- 445
+R + ++++ I++WD+E + + L+ +++ C
Sbjct: 613 NRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSA 672
Query: 446 DAKRIVSGAYDGKIKVWNL 464
D + SG DG I+VW +
Sbjct: 673 DGSTLFSGYTDGVIRVWGI 691
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 102/241 (42%), Gaps = 61/241 (25%)
Query: 115 DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRYRDEF 174
D ++ +S S D +++W+ ++ R GH +D L V+ S DN
Sbjct: 441 DGQFALSGSWDGELRLWDLAAGVSTRRFVGHT--------KDVLSVAFSLDNR------- 485
Query: 175 QIVSSSHDDTILIWDFLNYSETPIQXXXXXXXXXXXXXIENNWRMGKFLLQRINCRSENS 234
QIVS+S D TI +W+ L + I SE
Sbjct: 486 QIVSASRDRTIKLWNTLGECKYTI--------------------------------SEGG 513
Query: 235 KG----VYCLQYDDH----KIVSGLRDNTIKVWDRVSLQCIKVLTGHTG--SVLCLQYDE 284
+G V C+++ + IVS D T+KVW+ + + L GHTG S + + D
Sbjct: 514 EGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDG 573
Query: 285 RVIISGSSDSTVRVWDVNTGEMVNTLIHHCEAVLH-LRFS-NGMMVTCSKDRSIAVWDMV 342
+ SG D V +WD+ G+ + +L +V+H L FS N + + + I +WD+
Sbjct: 574 SLCASGGKDGVVLLWDLAEGKKLYSL--EANSVIHALCFSPNRYWLCAATEHGIKIWDLE 631
Query: 343 S 343
S
Sbjct: 632 S 632
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 16/91 (17%)
Query: 105 RDFISLLPNFDEKYIVSASGDRTIKVWNT-SSCEFV--RTLNGHKRGIACLQYRDRLVVS 161
+D +S+ + D + IVSAS DRTIK+WNT C++ GH+ ++C+++
Sbjct: 473 KDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRF------- 525
Query: 162 GSSDNTIRYRDEFQIVSSSHDDTILIWDFLN 192
S NT+ + IVS+S D T+ +W+ N
Sbjct: 526 --SPNTL----QPTIVSASWDKTVKVWNLSN 550
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 18/90 (20%)
Query: 104 QRDFISLL---PNFDEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYRDRLVV 160
RD++S + PN + IVSAS D+T+KVWN S+C+ TL GH ++ V
Sbjct: 516 HRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVST--------V 567
Query: 161 SGSSDNTIRYRDEFQIVSSSHDDTILIWDF 190
+ S D ++ S D +L+WD
Sbjct: 568 AVSPDGSL-------CASGGKDGVVLLWDL 590
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 409 LVVSGSSDNTIRLW-----DIECGACLRVLEGHEELVR--CIRFDAKRIVSGAYDGKIKV 461
++VS S D +I LW D G R L GH V + D + +SG++DG++++
Sbjct: 397 IIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRL 456
Query: 462 WNLVAALDPR 471
W+L A + R
Sbjct: 457 WDLAAGVSTR 466
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 105 bits (261), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 74/247 (29%), Positives = 122/247 (49%), Gaps = 33/247 (13%)
Query: 247 IVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVLCLQYDE--RVIISGSSDSTVRVWDVNTG 304
+VS D TIKVWD + + L GHT SV + +D +++ S S+D T+++WD
Sbjct: 123 MVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF 182
Query: 305 EMVNTLIHHCEAVLHLR-FSNG-MMVTCSKDRSIAVWDMVSPNEITLRRVLVGHRAAVNV 362
E + T+ H V + NG +V+ S+D++I +W++ + + + GHR V +
Sbjct: 183 ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCV---KTFTGHREWVRM 239
Query: 363 V--DFDEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYRDR------------ 408
V + D I S S D+T++VW ++ E L H+ + C+ +
Sbjct: 240 VRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGS 299
Query: 409 ----------LVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DAKRIVSGAYD 456
++SGS D TI++WD+ G CL L GH+ VR + F K I+S A D
Sbjct: 300 ETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADD 359
Query: 457 GKIKVWN 463
++VW+
Sbjct: 360 KTLRVWD 366
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 93/335 (27%), Positives = 147/335 (43%), Gaps = 79/335 (23%)
Query: 119 IVSASGDRTIKVWNTSSCEFVRTLNGHKRGIA--CLQYRDRLVVSGSSDNTIRYRDEFQI 176
+VSAS D TIKVW+ + +F RTL GH + + +L+ S S+D TI+
Sbjct: 123 MVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIK------- 175
Query: 177 VSSSHDDTILIWDFLNYSETPIQXXXXXXXXXXXXXIENNWRMGKFLLQRINCRSENSKG 236
+WDF + ++ ++ N
Sbjct: 176 ----------LWDFQGFE----------------------------CIRTMHGHDHNVSS 197
Query: 237 VYCLQYDDHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVLCLQ--YDERVIISGSSDS 294
V + DH IVS RD TIK+W+ + C+K TGH V ++ D +I S S+D
Sbjct: 198 VSIMPNGDH-IVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQ 256
Query: 295 TVRVWDVNTGEMVNTLIHHCEAVLHLRFS----------------------NGMMVTCSK 332
TVRVW V T E L H V + ++ +++ S+
Sbjct: 257 TVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR 316
Query: 333 DRSIAVWDMVSPNEITLRRVLVGHRAAVNVVDFDE--KYIVSASGDRTIKVWNTSSCEFV 390
D++I +WD VS + LVGH V V F K+I+S + D+T++VW+ + +
Sbjct: 317 DKTIKMWD-VSTGMCLM--TLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCM 373
Query: 391 RTLNGHKRGIACLQYRDR--LVVSGSSDNTIRLWD 423
+TLN H+ + L + VV+GS D T+++W+
Sbjct: 374 KTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
Score = 101 bits (251), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 70/242 (28%), Positives = 120/242 (49%), Gaps = 35/242 (14%)
Query: 253 DNTIKVWDRVSLQCIKVLTGHTGSV--LCLQYDERVIISGSSDSTVRVWDVNTGEMVNTL 310
D TIK+WD +CI+ + GH +V + + + I+S S D T+++W+V TG V T
Sbjct: 171 DMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF 230
Query: 311 IHHCEAVLHLRFSNG--MMVTCSKDRSIAVWDMVSPNEITLRRVLVGHRAAVNVVDFDEK 368
H E V +R + ++ +CS D+++ VW +V+ E + L HR V + + +
Sbjct: 231 TGHREWVRMVRPNQDGTLIASCSNDQTVRVW-VVATKEC--KAELREHRHVVECISWAPE 287
Query: 369 ----------------------YIVSASGDRTIKVWNTSSCEFVRTLNGHK---RGIACL 403
+++S S D+TIK+W+ S+ + TL GH RG+
Sbjct: 288 SSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGV-LF 346
Query: 404 QYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--AKRIVSGAYDGKIKV 461
+ ++S + D T+R+WD + C++ L HE V + F A +V+G+ D +KV
Sbjct: 347 HSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKV 406
Query: 462 WN 463
W
Sbjct: 407 WE 408
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 116/245 (47%), Gaps = 42/245 (17%)
Query: 269 VLTGHTGSVLCLQYDE--RVIISGSSDSTVRVWDVNTGEMVNTLIHHCEAVLHLRF--SN 324
L+GH V + + V++S S D+T++VWD TG+ TL H ++V + F S
Sbjct: 103 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 162
Query: 325 GMMVTCSKDRSIAVWDMVSPNEITLRRVLVGHRAAVNVVDF--DEKYIVSASGDRTIKVW 382
++ +CS D +I +WD I R + GH V+ V + +IVSAS D+TIK+W
Sbjct: 163 KLLASCSADMTIKLWDFQGFECI---RTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMW 219
Query: 383 NTSSCEFVRTLNGHKRGIACLQYRD--RLVVSGSSDNTIRLWDIECGACLRVLEGHEELV 440
+ V+T GH+ + ++ L+ S S+D T+R+W + C L H +V
Sbjct: 220 EVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVV 279
Query: 441 RCIRFDAKR----------------------IVSGAYDGKIKVWNLVAALDPRAPTTTLC 478
CI + + ++SG+ D IK+W++ +T +C
Sbjct: 280 ECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDV---------STGMC 330
Query: 479 LRTLV 483
L TLV
Sbjct: 331 LMTLV 335
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/301 (24%), Positives = 125/301 (41%), Gaps = 79/301 (26%)
Query: 113 NFDE--KYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRY 170
+FD K + S S D TIK+W+ E +RT++GH ++ + ++ +G
Sbjct: 157 SFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVS----IMPNGD------- 205
Query: 171 RDEFQIVSSSHDDTILIWDFLNYSETPIQXXXXXXXXXXXXXIENNWRMGKFLLQR--IN 228
IVS+S D TI +W+ ++ + + F R +
Sbjct: 206 ----HIVSASRDKTIKMWE-----------------------VQTGYCVKTFTGHREWVR 238
Query: 229 CRSENSKGVYCLQYDDHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVLCLQYDER--- 285
N G I S D T++VW + +C L H V C+ +
Sbjct: 239 MVRPNQDGTL--------IASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSY 290
Query: 286 -------------------VIISGSSDSTVRVWDVNTGEMVNTLIHHCEAVLHLRFSNG- 325
++SGS D T+++WDV+TG + TL+ H V + F +G
Sbjct: 291 SSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGG 350
Query: 326 -MMVTCSKDRSIAVWDMVSPNEITLRRVLVGHRAAVNVVDFDEK--YIVSASGDRTIKVW 382
+++C+ D+++ VWD + + L H V +DF + Y+V+ S D+T+KVW
Sbjct: 351 KFILSCADDKTLRVWDYKNKR---CMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407
Query: 383 N 383
Sbjct: 408 E 408
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 84/205 (40%), Gaps = 37/205 (18%)
Query: 104 QRDFISLL-PNFDEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYRDRLVVSG 162
R+++ ++ PN D I S S D+T++VW ++ E L H+ + C+ + S
Sbjct: 233 HREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSS 292
Query: 163 SSDNTIRYRDEFQ-----IVSSSHDDTILIWDFLNYSETPIQXXXXXXXXXXXXXIENNW 217
S+ T + ++S S D TI +WD +NW
Sbjct: 293 ISEATGSETKKSGKPGPFLLSGSRDKTIKMWDV------------STGMCLMTLVGHDNW 340
Query: 218 RMGKFLLQRINCRSENSKGVYCLQYDDHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSV 277
G +S G + L D D T++VWD + +C+K L H V
Sbjct: 341 VRGVLF---------HSGGKFILSCAD--------DKTLRVWDYKNKRCMKTLNAHEHFV 383
Query: 278 LCLQYDERV--IISGSSDSTVRVWD 300
L + + +++GS D TV+VW+
Sbjct: 384 TSLDFHKTAPYVVTGSVDQTVKVWE 408
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 91.7 bits (226), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 78/279 (27%), Positives = 125/279 (44%), Gaps = 46/279 (16%)
Query: 225 QRINCRSENSKGVY----CLQYDDHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVLCL 280
+ +N S S +Y C D + +G D I++WD + + + +L GH + L
Sbjct: 112 ENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSL 171
Query: 281 QY--DERVIISGSSDSTVRVWDVNTGEMVNTL-IHHCEAVLHLRFSNGMMVTC-SKDRSI 336
Y ++SGS D TVR+WD+ TG+ TL I + + +G + S DR++
Sbjct: 172 DYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAV 231
Query: 337 AVWDMVSPNEITLRRV------LVGHRAAVNVVDF--DEKYIVSASGDRTIKVW------ 382
VWD S + R+ GH+ +V V F D + +VS S DR++K+W
Sbjct: 232 RVWD--SETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNAN 289
Query: 383 --------NTSSCEFVRTLNGHKR---GIACLQYRDRLVVSGSSDNTIRLWDIECGACLR 431
N+ +CE T GHK +A Q D ++SGS D + WD + G L
Sbjct: 290 NKSDSKTPNSGTCEV--TYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKSGNPLL 346
Query: 432 VLEGHEELVRCIRF--------DAKRIVSGAYDGKIKVW 462
+L+GH V + + +G+ D K ++W
Sbjct: 347 MLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIW 385
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/249 (26%), Positives = 115/249 (46%), Gaps = 42/249 (16%)
Query: 273 HTGSVLCLQY--DERVIISGSSDSTVRVWDVNTGEMVNTLIHHCEAV------------- 317
HT V C+++ D + +G + T +V+ V+ G +V L A
Sbjct: 63 HTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPS 121
Query: 318 --LHLR---FS--NGMMVTCSKDRSIAVWDMVSPNEITLRRVLVGHRAAVNVVDF--DEK 368
L++R FS + T ++DR I +WD + +I + +L GH + +D+
Sbjct: 122 SDLYIRSVCFSPDGKFLATGAEDRLIRIWD-IENRKIVM--ILQGHEQDIYSLDYFPSGD 178
Query: 369 YIVSASGDRTIKVWN--TSSCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIEC 426
+VS SGDRT+++W+ T C ++ +A + + +GS D +R+WD E
Sbjct: 179 KLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET 238
Query: 427 GACLRVLE-------GHEELVRCIRF--DAKRIVSGAYDGKIKVWNLVAA---LDPRAPT 474
G + L+ GH++ V + F D + +VSG+ D +K+WNL A D + P
Sbjct: 239 GFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPN 298
Query: 475 TTLCLRTLV 483
+ C T +
Sbjct: 299 SGTCEVTYI 307
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 81/324 (25%), Positives = 131/324 (40%), Gaps = 86/324 (26%)
Query: 94 HINTYLKPMLQRDFISLLPNFDEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQ 153
++NT P S+ + D K++ + + DR I++W+ + + V L GH++ I L
Sbjct: 113 NLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLD 172
Query: 154 Y---RDRLVVSGSSDNTIRYRDEFQIVSSSHDDTILIWDFLNYSETPIQXXXXXXXXXXX 210
Y D+L VSGS D T+R IWD
Sbjct: 173 YFPSGDKL-VSGSGDRTVR-----------------IWDL-------------------- 194
Query: 211 XXIENNWRMGKFLLQRINCRSENSKGVYCLQYDDHK-IVSGLRDNTIKVWDRVSLQCIKV 269
R G+ L E+ + D K I +G D ++VWD + ++
Sbjct: 195 -------RTGQCSL---TLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVER 244
Query: 270 L-------TGHTGSVLCLQY--DERVIISGSSDSTVRVWDV------------NTGEMVN 308
L TGH SV + + D + ++SGS D +V++W++ N+G
Sbjct: 245 LDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEV 304
Query: 309 TLIHHCEAVLHLRFSNG--MMVTCSKDRSIAVWDMVSPNEITLRRVLVGHR------AAV 360
T I H + VL + + +++ SKDR + WD S N + + L GHR A
Sbjct: 305 TYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLM---LQGHRNSVISVAVA 361
Query: 361 NVVDFDEKYIV--SASGDRTIKVW 382
N +Y V + SGD ++W
Sbjct: 362 NGSSLGPEYNVFATGSGDCKARIW 385
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 111/223 (49%), Gaps = 22/223 (9%)
Query: 264 LQCIKVLTGHTGSVLCLQY--DERVIISGSSDSTVRVWDVNTGEMVNTLIHHCEAVLHLR 321
L C + L GH+G V L + ++ I+S S D + VW+ T + + + HC V+
Sbjct: 56 LVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECA 115
Query: 322 FS-NGMMVTCSK-DRSIAVWDMVSP----NEITLRRVLVGHRAAVNVVDF---DEKYIVS 372
F+ NG V C D + +++++ S + + RVL GH+ + + E +++
Sbjct: 116 FAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLIT 175
Query: 373 ASGDRTIKVWNTSSCEFVRTL-----NGHKRGIACLQYRD---RLVVSGSSDNTIRLWDI 424
SGD+T +W+ ++ + + +GH + L + +SGS D T+RLWD+
Sbjct: 176 GSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDL 235
Query: 425 ECGA-CLRVLEGHEELVRCIRF--DAKRIVSGAYDGKIKVWNL 464
+ +R GHE + ++F D +R +G+ DG +++++
Sbjct: 236 RITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDM 278
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 93/390 (23%), Positives = 150/390 (38%), Gaps = 85/390 (21%)
Query: 109 SLLPNFDEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTI 168
+LL EKY S + RT +N + RTL GH + L +
Sbjct: 31 TLLDTDVEKY--SKAQGRTAVSFNPTDLVCCRTLQGHSGKVYSLDWTP------------ 76
Query: 169 RYRDEFQIVSSSHDDTILIWDFLNYSETPIQXXXXXXXXXXXXXIENNWRMGKFLLQRIN 228
++ IVS+S D +++W+ L +T + W M
Sbjct: 77 ---EKNWIVSASQDGRLIVWNALTSQKT------------HAIKLHCPWVM--------E 113
Query: 229 CR-SENSKGVYCLQYDDHKIVSGL-----RDNTIKVWDRVSLQCIKVLTGHTGSVLCLQY 282
C + N + V C D + L RD + V +VLTGH G QY
Sbjct: 114 CAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPV--------SRVLTGHKGYASSCQY 165
Query: 283 ---DERVIISGSSDSTVRVWDVNTGEMVNTL-----IHHCEAVLHLRFSN---GMMVTCS 331
E +I+GS D T +WDV TG+ ++ H VL L ++ M ++ S
Sbjct: 166 VPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGS 225
Query: 332 KDRSIAVWDMVSPNEITLR--RVLVGHRAAVNVVDF--DEKYIVSASGDRTIKVWNTSSC 387
D ++ +WD+ IT R R GH +N V F D + + S D T ++++ +
Sbjct: 226 CDTTVRLWDL----RITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTG 281
Query: 388 EFVRTLNGHKR---------GIACLQYRDRLVVSGSSDNTIRLWDI---ECGACLRVLE- 434
++ N RL+ +G S+ +WD E L L+
Sbjct: 282 HQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQN 341
Query: 435 GHEELVRCIRF--DAKRIVSGAYDGKIKVW 462
HE + C+ D + +G++D +K+W
Sbjct: 342 SHEGRISCLGLSSDGSALCTGSWDKNLKIW 371
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 429 CLRVLEGHEELVRCIRFDAKR--IVSGAYDGKIKVWNLVAALDPRA 472
C R L+GH V + + ++ IVS + DG++ VWN + + A
Sbjct: 58 CCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHA 103
>pdb|2P64|A Chain A, D Domain Of B-Trcp
pdb|2P64|B Chain B, D Domain Of B-Trcp
Length = 52
Score = 86.3 bits (212), Expect = 4e-17, Method: Composition-based stats.
Identities = 33/51 (64%), Positives = 43/51 (84%)
Query: 54 APQFASEKEMCFKYFDKWSEQDQIDFVENLLSRMCHYQHGHINTYLKPMLQ 104
A + EKE+C KYF++WSE DQ++FVE+L+S+ CHYQHGHIN+YLKP LQ
Sbjct: 2 AASYEKEKELCVKYFEQWSESDQVEFVEHLISQXCHYQHGHINSYLKPXLQ 52
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 70/240 (29%), Positives = 113/240 (47%), Gaps = 20/240 (8%)
Query: 241 QYDDHKIVSGLRDNTIKVWDRVSLQC-----IKVLTGHTGSV--LCLQYDERVIISGSSD 293
Q+ D I+S RD TI +W + + L GH+ V + + D + +SGS D
Sbjct: 49 QFPD-MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWD 107
Query: 294 STVRVWDVNTGEMVNTLIHHCEAVLHLRFS--NGMMVTCSKDRSIAVWDMVSPNEITLRR 351
T+R+WD+ TG + H + VL + FS N +V+ S+D++I +W+ + + T++
Sbjct: 108 GTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD 167
Query: 352 VLVGHRAAVNVVDF----DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYR- 406
H V+ V F IVS D+ +KVWN ++C+ GH + +
Sbjct: 168 --ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSP 225
Query: 407 -DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDAKRIVSGAYDG-KIKVWNL 464
L SG D LWD+ G L L+G +++ + F R A G IK+W+L
Sbjct: 226 DGSLCASGGKDGQAMLWDLNEGKHLYTLDG-GDIINALCFSPNRYWLCAATGPSIKIWDL 284
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 62/248 (25%), Positives = 113/248 (45%), Gaps = 27/248 (10%)
Query: 240 LQYDDHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVLCLQY--DERVIISGSSDSTVR 297
+ D +SG D T+++WD + + GHT VL + + D R I+SGS D T++
Sbjct: 94 ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK 153
Query: 298 VWDVNTGEMVNTLIH---HCEAVLHLRF----SNGMMVTCSKDRSIAVWDMVSPNEITLR 350
+W NT + + H E V +RF SN ++V+C D+ + VW++ + L+
Sbjct: 154 LW--NTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN---CKLK 208
Query: 351 RVLVGHRAAVNVVDFDEKYIVSASG--DRTIKVWNTSSCEFVRTLNGHKRGIACLQYRDR 408
+GH +N V + ASG D +W+ + + + TL+G A +R
Sbjct: 209 TNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNR 268
Query: 409 LVVSGSSDNTIRLWDIECGACLRVLE-------GHEELVRCIRF----DAKRIVSGAYDG 457
+ ++ +I++WD+E + L+ E +C D + + +G D
Sbjct: 269 YWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDN 328
Query: 458 KIKVWNLV 465
++VW +
Sbjct: 329 LVRVWQVT 336
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 76/344 (22%), Positives = 131/344 (38%), Gaps = 73/344 (21%)
Query: 108 ISLLPNFDEKYIVSASGDRTIKVWNTSSCEF-----VRTLNGHKRGIACLQYRDRLVVSG 162
I+ P F + I+SAS D+TI +W + E R L GH +
Sbjct: 44 IATTPQFPD-MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFV------------- 89
Query: 163 SSDNTIRYRDEFQIVSSSHDDTILIWDFLNYSETPIQXXXXXXXXXXXXXIENNWRMGKF 222
SD I +F + S S D T+ +WD + T
Sbjct: 90 -SDVVISSDGQFAL-SGSWDGTLRLWDLTTGTTT-------------------------- 121
Query: 223 LLQRINCRSENSKGVYCLQYDDHKIVSGLRDNTIKVWDRVSLQCIKVL-TGHTGSVLCLQ 281
+R +++ V D+ +IVSG RD TIK+W+ + + V H+ V C++
Sbjct: 122 --RRFVGHTKDVLSV-AFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVR 178
Query: 282 YDER----VIISGSSDSTVRVWDVNTGEMVNTLIHHCEAVLHLRFS--NGMMVTCSKDRS 335
+ +I+S D V+VW++ ++ I H + + S + + KD
Sbjct: 179 FSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQ 238
Query: 336 IAVWDMVSPNEITLRRVLVGHRAAVNVVDFD-EKYIVSASGDRTIKVWNTSSCEFVRTLN 394
+WD+ NE L G +N + F +Y + A+ +IK+W+ V L
Sbjct: 239 AMLWDL---NEGKHLYTLDGGD-IINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELK 294
Query: 395 GHKRGIA-----------CLQYRDRLVVSGSSDNTIRLWDIECG 427
+ + + +G +DN +R+W + G
Sbjct: 295 QEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 338
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 12/91 (13%)
Query: 392 TLNGHKRGIACL----QYRDRLVVSGSSDNTIRLWDI-----ECGACLRVLEGHEELVR- 441
TL GH + + Q+ D +++S S D TI +W + G R L GH V
Sbjct: 33 TLKGHNGWVTQIATTPQFPD-MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSD 91
Query: 442 -CIRFDAKRIVSGAYDGKIKVWNLVAALDPR 471
I D + +SG++DG +++W+L R
Sbjct: 92 VVISSDGQFALSGSWDGTLRLWDLTTGTTTR 122
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 14/89 (15%)
Query: 105 RDFISLLPNFDEKYIVSASGDRTIKVWNT-SSCEFVRTLNGHKRGIACLQYRDRLVVSGS 163
+D +S+ + D + IVS S D+TIK+WNT C++ H ++C+++ S +
Sbjct: 129 KDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRF------SPN 182
Query: 164 SDNTIRYRDEFQIVSSSHDDTILIWDFLN 192
S N I IVS D + +W+ N
Sbjct: 183 SSNPI-------IVSCGWDKLVKVWNLAN 204
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 70/240 (29%), Positives = 113/240 (47%), Gaps = 20/240 (8%)
Query: 241 QYDDHKIVSGLRDNTIKVWDRVSLQC-----IKVLTGHTGSV--LCLQYDERVIISGSSD 293
Q+ D I+S RD TI +W + + L GH+ V + + D + +SGS D
Sbjct: 26 QFPD-MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWD 84
Query: 294 STVRVWDVNTGEMVNTLIHHCEAVLHLRFS--NGMMVTCSKDRSIAVWDMVSPNEITLRR 351
T+R+WD+ TG + H + VL + FS N +V+ S+D++I +W+ + + T++
Sbjct: 85 GTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD 144
Query: 352 VLVGHRAAVNVVDF----DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYR- 406
H V+ V F IVS D+ +KVWN ++C+ GH + +
Sbjct: 145 --ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSP 202
Query: 407 -DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDAKRIVSGAYDG-KIKVWNL 464
L SG D LWD+ G L L+G +++ + F R A G IK+W+L
Sbjct: 203 DGSLCASGGKDGQAMLWDLNEGKHLYTLDG-GDIINALCFSPNRYWLCAATGPSIKIWDL 261
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 62/248 (25%), Positives = 113/248 (45%), Gaps = 27/248 (10%)
Query: 240 LQYDDHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVLCLQY--DERVIISGSSDSTVR 297
+ D +SG D T+++WD + + GHT VL + + D R I+SGS D T++
Sbjct: 71 ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK 130
Query: 298 VWDVNTGEMVNTLIH---HCEAVLHLRF----SNGMMVTCSKDRSIAVWDMVSPNEITLR 350
+W NT + + H E V +RF SN ++V+C D+ + VW++ + L+
Sbjct: 131 LW--NTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN---CKLK 185
Query: 351 RVLVGHRAAVNVVDFDEKYIVSASG--DRTIKVWNTSSCEFVRTLNGHKRGIACLQYRDR 408
+GH +N V + ASG D +W+ + + + TL+G A +R
Sbjct: 186 TNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNR 245
Query: 409 LVVSGSSDNTIRLWDIECGACLRVLE-------GHEELVRCIRF----DAKRIVSGAYDG 457
+ ++ +I++WD+E + L+ E +C D + + +G D
Sbjct: 246 YWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDN 305
Query: 458 KIKVWNLV 465
++VW +
Sbjct: 306 LVRVWQVT 313
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 76/344 (22%), Positives = 131/344 (38%), Gaps = 73/344 (21%)
Query: 108 ISLLPNFDEKYIVSASGDRTIKVWNTSSCEF-----VRTLNGHKRGIACLQYRDRLVVSG 162
I+ P F + I+SAS D+TI +W + E R L GH +
Sbjct: 21 IATTPQFPD-MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFV------------- 66
Query: 163 SSDNTIRYRDEFQIVSSSHDDTILIWDFLNYSETPIQXXXXXXXXXXXXXIENNWRMGKF 222
SD I +F + S S D T+ +WD + T
Sbjct: 67 -SDVVISSDGQFAL-SGSWDGTLRLWDLTTGTTT-------------------------- 98
Query: 223 LLQRINCRSENSKGVYCLQYDDHKIVSGLRDNTIKVWDRVSLQCIKVL-TGHTGSVLCLQ 281
+R +++ V D+ +IVSG RD TIK+W+ + + V H+ V C++
Sbjct: 99 --RRFVGHTKDVLSV-AFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVR 155
Query: 282 YDER----VIISGSSDSTVRVWDVNTGEMVNTLIHHCEAVLHLRFS--NGMMVTCSKDRS 335
+ +I+S D V+VW++ ++ I H + + S + + KD
Sbjct: 156 FSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQ 215
Query: 336 IAVWDMVSPNEITLRRVLVGHRAAVNVVDFD-EKYIVSASGDRTIKVWNTSSCEFVRTLN 394
+WD+ NE L G +N + F +Y + A+ +IK+W+ V L
Sbjct: 216 AMLWDL---NEGKHLYTLDGGD-IINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELK 271
Query: 395 GHKRGIA-----------CLQYRDRLVVSGSSDNTIRLWDIECG 427
+ + + +G +DN +R+W + G
Sbjct: 272 QEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 315
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 12/91 (13%)
Query: 392 TLNGHKRGIACL----QYRDRLVVSGSSDNTIRLWDI-----ECGACLRVLEGHEELVR- 441
TL GH + + Q+ D +++S S D TI +W + G R L GH V
Sbjct: 10 TLKGHNGWVTQIATTPQFPD-MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSD 68
Query: 442 -CIRFDAKRIVSGAYDGKIKVWNLVAALDPR 471
I D + +SG++DG +++W+L R
Sbjct: 69 VVISSDGQFALSGSWDGTLRLWDLTTGTTTR 99
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 14/89 (15%)
Query: 105 RDFISLLPNFDEKYIVSASGDRTIKVWNT-SSCEFVRTLNGHKRGIACLQYRDRLVVSGS 163
+D +S+ + D + IVS S D+TIK+WNT C++ H ++C+++ S +
Sbjct: 106 KDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRF------SPN 159
Query: 164 SDNTIRYRDEFQIVSSSHDDTILIWDFLN 192
S N I IVS D + +W+ N
Sbjct: 160 SSNPI-------IVSCGWDKLVKVWNLAN 181
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 94/190 (49%), Gaps = 16/190 (8%)
Query: 287 IISGSSDSTVRVWDVNTGEMVNTLIHHCEAV--LHLRFSNGMMVTCSKDRSIAVWDMVSP 344
II GS D +RV++ NTGE V H + + + + + +++ S D ++ +W+
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW--E 127
Query: 345 NEITLRRVLVGHRAAVNVVDFDEK---YIVSASGDRTIKVWN--TSSCEFVRTLNGHKRG 399
N L + GH V V F+ K S DRT+KVW+ S+ F T G +RG
Sbjct: 128 NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT-TGQERG 186
Query: 400 IACLQYR----DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDAKR--IVSG 453
+ + Y +++ S D TI++WD + +C+ LEGH V F I+SG
Sbjct: 187 VNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISG 246
Query: 454 AYDGKIKVWN 463
+ DG +K+WN
Sbjct: 247 SEDGTLKIWN 256
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 77/159 (48%), Gaps = 14/159 (8%)
Query: 247 IVSGLRDNTIKVWDRVSLQCI-KVLTGHTGSVLCLQY---DERVIISGSSDSTVRVWDVN 302
++SG D T+K+W+ + + + GH V+C+ + D SG D TV+VW +
Sbjct: 112 VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG 171
Query: 303 TGEMVNTLIHHCE-AVLHLRF----SNGMMVTCSKDRSIAVWDMVSPNEITLRRVLVGHR 357
TL E V ++ + M+T S D +I +WD + + + L GH
Sbjct: 172 QSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVA---TLEGHM 228
Query: 358 AAVNVVDFDEKY--IVSASGDRTIKVWNTSSCEFVRTLN 394
+ V+ F I+S S D T+K+WN+S+ + +TLN
Sbjct: 229 SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLN 267
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 54/105 (51%), Gaps = 8/105 (7%)
Query: 367 EKYIVSASGDRTIKVWNTSSCEFVRTLNGHK---RGIACLQYRDRLVVSGSSDNTIRLWD 423
+ +I+ S D I+V+N ++ E V H R IA + V+SGS D T++LW+
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWN 125
Query: 424 IECGACL-RVLEGHEELVRCIRFDAK---RIVSGAYDGKIKVWNL 464
E L + EGHE V C+ F+ K SG D +KVW+L
Sbjct: 126 WENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 79/198 (39%), Gaps = 43/198 (21%)
Query: 116 EKYIVSASGDRTIKVWN-TSSCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRYRDEF 174
+ Y++S S D T+K+WN ++ +T GH+ + C+ + + D
Sbjct: 109 KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPK--------------DPS 154
Query: 175 QIVSSSHDDTILIWDFLNYSETPIQXXXXXXXXXXXXXIENNWRMGKFLLQRINCRSENS 234
S D T+ +W TP F L R N
Sbjct: 155 TFASGCLDRTVKVWSLGQ--STP-----------------------NFTLTTGQERGVNY 189
Query: 235 KGVYCLQYDDHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVLCLQYDER--VIISGSS 292
Y L D +++ D TIK+WD + C+ L GH +V + +IISGS
Sbjct: 190 VDYYPLP-DKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSE 248
Query: 293 DSTVRVWDVNTGEMVNTL 310
D T+++W+ +T ++ TL
Sbjct: 249 DGTLKIWNSSTYKVEKTL 266
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 106 DFISLLPNFDEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYRDRL--VVSGS 163
+++ P D+ Y+++AS D TIK+W+ + V TL GH ++ + L ++SGS
Sbjct: 188 NYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGS 247
Query: 164 SDNTIR 169
D T++
Sbjct: 248 EDGTLK 253
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 119 IVSASGDRTIKVWNTSSCEFVRTLN 143
I+S S D T+K+WN+S+ + +TLN
Sbjct: 243 IISGSEDGTLKIWNSSTYKVEKTLN 267
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 94/190 (49%), Gaps = 16/190 (8%)
Query: 287 IISGSSDSTVRVWDVNTGEMVNTLIHHCEAV--LHLRFSNGMMVTCSKDRSIAVWDMVSP 344
II GS D +RV++ NTGE V H + + + + + +++ S D ++ +W+
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW--E 127
Query: 345 NEITLRRVLVGHRAAVNVVDFDEK---YIVSASGDRTIKVWN--TSSCEFVRTLNGHKRG 399
N L + GH V V F+ K S DRT+KVW+ S+ F T G +RG
Sbjct: 128 NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT-TGQERG 186
Query: 400 IACLQYR----DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDAKR--IVSG 453
+ + Y +++ S D TI++WD + +C+ LEGH V F I+SG
Sbjct: 187 VNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISG 246
Query: 454 AYDGKIKVWN 463
+ DG +K+WN
Sbjct: 247 SEDGTLKIWN 256
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 77/159 (48%), Gaps = 14/159 (8%)
Query: 247 IVSGLRDNTIKVWDRVSLQCI-KVLTGHTGSVLCLQY---DERVIISGSSDSTVRVWDVN 302
++SG D T+K+W+ + + + GH V+C+ + D SG D TV+VW +
Sbjct: 112 VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG 171
Query: 303 TGEMVNTLIHHCE-AVLHLRF----SNGMMVTCSKDRSIAVWDMVSPNEITLRRVLVGHR 357
TL E V ++ + M+T S D +I +WD + + + L GH
Sbjct: 172 QSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVA---TLEGHM 228
Query: 358 AAVNVVDFDEKY--IVSASGDRTIKVWNTSSCEFVRTLN 394
+ V+ F I+S S D T+K+WN+S+ + +TLN
Sbjct: 229 SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLN 267
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 54/105 (51%), Gaps = 8/105 (7%)
Query: 367 EKYIVSASGDRTIKVWNTSSCEFVRTLNGHK---RGIACLQYRDRLVVSGSSDNTIRLWD 423
+ +I+ S D I+V+N ++ E V H R IA + V+SGS D T++LW+
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWN 125
Query: 424 IECGACL-RVLEGHEELVRCIRFDAK---RIVSGAYDGKIKVWNL 464
E L + EGHE V C+ F+ K SG D +KVW+L
Sbjct: 126 WENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 79/198 (39%), Gaps = 43/198 (21%)
Query: 116 EKYIVSASGDRTIKVWN-TSSCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRYRDEF 174
+ Y++S S D T+K+WN ++ +T GH+ + C+ + + D
Sbjct: 109 KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPK--------------DPS 154
Query: 175 QIVSSSHDDTILIWDFLNYSETPIQXXXXXXXXXXXXXIENNWRMGKFLLQRINCRSENS 234
S D T+ +W TP F L R N
Sbjct: 155 TFASGCLDRTVKVWSLGQ--STP-----------------------NFTLTTGQERGVNY 189
Query: 235 KGVYCLQYDDHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVLCLQYDER--VIISGSS 292
Y L D +++ D TIK+WD + C+ L GH +V + +IISGS
Sbjct: 190 VDYYPLP-DKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSE 248
Query: 293 DSTVRVWDVNTGEMVNTL 310
D T+++W+ +T ++ TL
Sbjct: 249 DGTLKIWNSSTYKVEKTL 266
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 106 DFISLLPNFDEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYRDRL--VVSGS 163
+++ P D+ Y+++AS D TIK+W+ + V TL GH ++ + L ++SGS
Sbjct: 188 NYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGS 247
Query: 164 SDNTIR 169
D T++
Sbjct: 248 EDGTLK 253
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 119 IVSASGDRTIKVWNTSSCEFVRTLN 143
I+S S D T+K+WN+S+ + +TLN
Sbjct: 243 IISGSEDGTLKIWNSSTYKVEKTLN 267
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 81.6 bits (200), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 97/190 (51%), Gaps = 16/190 (8%)
Query: 287 IISGSSDSTVRVWDVNTGEMVNTLIHHCEAV--LHLRFSNGMMVTCSKDRSIAVWDMVSP 344
II GS D +RV++ NTGE V H + + + + + +++ S D ++ +W+
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW--E 127
Query: 345 NEITLRRVLVGHRAAVNVVDFDEKYIVS-ASG--DRTIKVWN--TSSCEFVRTLNGHKRG 399
N L + GH V V F+ K + ASG DRT+KVW+ S+ F T G +RG
Sbjct: 128 NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT-TGQERG 186
Query: 400 IACLQYR----DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDAKR--IVSG 453
+ + Y +++ S D TI++WD + +C+ LEGH V F I+SG
Sbjct: 187 VNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISG 246
Query: 454 AYDGKIKVWN 463
+ DG +K+WN
Sbjct: 247 SEDGTLKIWN 256
Score = 68.2 bits (165), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 112/246 (45%), Gaps = 26/246 (10%)
Query: 247 IVSGLRDNTIKVWDRVSLQCIKVLTGHTGSV--LCLQYDERVIISGSSDSTVRVWD-VNT 303
I+ G D I+V++ + + + H + + + + ++SGS D TV++W+ N
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 304 GEMVNTLIHHCEAVLHLRFSNGMMVTCSK---DRSIAVWDM--VSPNEITLRRVLVGHRA 358
+ T H V+ + F+ T + DR++ VW + +PN TL G
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN-FTLT---TGQER 185
Query: 359 AVNVVDF----DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYRDRL--VVS 412
VN VD+ D+ Y+++AS D TIK+W+ + V TL GH ++ + L ++S
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIIS 245
Query: 413 GSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDA---KRIVSGAYDGKIKVWNL----- 464
GS D T+++W+ + L E CI K ++ +D V +L
Sbjct: 246 GSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEP 305
Query: 465 VAALDP 470
+LDP
Sbjct: 306 TLSLDP 311
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 78/196 (39%), Gaps = 43/196 (21%)
Query: 118 YIVSASGDRTIKVWN-TSSCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRYRDEFQI 176
Y++S S D T+K+WN ++ +T GH+ + C+ + + D
Sbjct: 111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPK--------------DPSTF 156
Query: 177 VSSSHDDTILIWDFLNYSETPIQXXXXXXXXXXXXXIENNWRMGKFLLQRINCRSENSKG 236
S D T+ +W TP F L R N
Sbjct: 157 ASGCLDRTVKVWSLG--QSTP-----------------------NFTLTTGQERGVNYVD 191
Query: 237 VYCLQYDDHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVLCLQYDER--VIISGSSDS 294
Y L D +++ D TIK+WD + C+ L GH +V + +IISGS D
Sbjct: 192 YYPLP-DKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDG 250
Query: 295 TVRVWDVNTGEMVNTL 310
T+++W+ +T ++ TL
Sbjct: 251 TLKIWNSSTYKVEKTL 266
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 93/240 (38%), Gaps = 65/240 (27%)
Query: 116 EKYIVSASGDRTIKVWNTSSCEFVRTLNGHK---RGIACLQYRDRLVVSGSSDNTIRYRD 172
+ +I+ S D I+V+N ++ E V H R IA + V+SGS D T++
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTK-PYVLSGSDDLTVK--- 122
Query: 173 EFQIVSSSHDDTILIWDFLNYSETPIQXXXXXXXXXXXXXIENNWRMGKFLLQR---INC 229
+W++ ENNW + + + C
Sbjct: 123 --------------LWNW-----------------------ENNWALEQTFEGHEHFVMC 145
Query: 230 RSENSKGVYCLQYDDHKIVSGLRDNTIKVWD-RVSLQCIKVLTGHTGSVLCLQY----DE 284
+ N K D SG D T+KVW S + TG V + Y D+
Sbjct: 146 VAFNPK-------DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDK 198
Query: 285 RVIISGSSDSTVRVWDVNTGEMVNTLIHHCE----AVLHLRFSNGMMVTCSKDRSIAVWD 340
+I+ S D T+++WD T V TL H AV H ++++ S+D ++ +W+
Sbjct: 199 PYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP--IIISGSEDGTLKIWN 256
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 106 DFISLLPNFDEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYRDRL--VVSGS 163
+++ P D+ Y+++AS D TIK+W+ + V TL GH ++ + L ++SGS
Sbjct: 188 NYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGS 247
Query: 164 SDNTIR 169
D T++
Sbjct: 248 EDGTLK 253
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 11/75 (14%)
Query: 119 IVSASGDRTIKVWNTSSCEFVRTLN-GHKRGIACLQY---RDRLVVSGSSDNTIRYRDEF 174
I+S S D T+K+WN+S+ + +TLN G +R + R + SG + + F
Sbjct: 243 IISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASG-------FDNGF 295
Query: 175 QIVSSSHDDTILIWD 189
++S +D+ L D
Sbjct: 296 TVLSLGNDEPTLSLD 310
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 99/190 (52%), Gaps = 16/190 (8%)
Query: 287 IISGSSDSTVRVWDVNTGEMVNTLIHHCEAV--LHLRFSNGMMVTCSKDRSIAVWDMVSP 344
II GS D +RV++ NTGE V H + + + + + +++ S D ++ +W+
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW--E 127
Query: 345 NEITLRRVLVGHRAAVNVVDFDEKYIVS-ASG--DRTIKVWN--TSSCEFVRTLNGHKRG 399
N L + GH V V F+ K + ASG DRT+KVW+ S+ F T G +RG
Sbjct: 128 NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT-TGQERG 186
Query: 400 IACLQYR---DR-LVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDAKR--IVSG 453
+ + Y D+ +++ S D TI++WD + +C+ LEGH V F I+SG
Sbjct: 187 VNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISG 246
Query: 454 AYDGKIKVWN 463
+ DG +K+WN
Sbjct: 247 SEDGTLKIWN 256
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 112/246 (45%), Gaps = 26/246 (10%)
Query: 247 IVSGLRDNTIKVWDRVSLQCIKVLTGHTGSV--LCLQYDERVIISGSSDSTVRVWD-VNT 303
I+ G D I+V++ + + + H + + + + ++SGS D TV++W+ N
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 304 GEMVNTLIHHCEAVLHLRFSNGMMVTCSK---DRSIAVWDM--VSPNEITLRRVLVGHRA 358
+ T H V+ + F+ T + DR++ VW + +PN TL G
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN-FTLT---TGQER 185
Query: 359 AVNVVDF----DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYRDRL--VVS 412
VN VD+ D+ Y+++AS D TIK+W+ + V TL GH ++ + L ++S
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIIS 245
Query: 413 GSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDA---KRIVSGAYDGKIKVWNL----- 464
GS D T+++W+ + L E CI K ++ +D V +L
Sbjct: 246 GSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEP 305
Query: 465 VAALDP 470
+LDP
Sbjct: 306 TLSLDP 311
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 78/196 (39%), Gaps = 43/196 (21%)
Query: 118 YIVSASGDRTIKVWN-TSSCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRYRDEFQI 176
Y++S S D T+K+WN ++ +T GH+ + C+ + + D
Sbjct: 111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPK--------------DPSTF 156
Query: 177 VSSSHDDTILIWDFLNYSETPIQXXXXXXXXXXXXXIENNWRMGKFLLQRINCRSENSKG 236
S D T+ +W TP F L R N
Sbjct: 157 ASGCLDRTVKVWSL--GQSTP-----------------------NFTLTTGQERGVNYVD 191
Query: 237 VYCLQYDDHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVLCLQYDER--VIISGSSDS 294
Y L D +++ D TIK+WD + C+ L GH +V + +IISGS D
Sbjct: 192 YYPLP-DKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDG 250
Query: 295 TVRVWDVNTGEMVNTL 310
T+++W+ +T ++ TL
Sbjct: 251 TLKIWNSSTYKVEKTL 266
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 68/290 (23%), Positives = 103/290 (35%), Gaps = 100/290 (34%)
Query: 116 EKYIVSASGDRTIKVWNTSSCEFVRTLNGHK---RGIACLQYRDRLVVSGSSDNTIRYRD 172
+ +I+ S D I+V+N ++ E V H R IA + V+SGS D T++
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTK-PYVLSGSDDLTVK--- 122
Query: 173 EFQIVSSSHDDTILIWDFLNYSETPIQXXXXXXXXXXXXXIENNWRMGKFLLQR---INC 229
+W++ ENNW + + + C
Sbjct: 123 --------------LWNW-----------------------ENNWALEQTFEGHEHFVMC 145
Query: 230 RSENSKGVYCLQYDDHKIVSGLRDNTIKVWD-RVSLQCIKVLTGHTGSVLCLQY----DE 284
+ N K D SG D T+KVW S + TG V + Y D+
Sbjct: 146 VAFNPK-------DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDK 198
Query: 285 RVIISGSSDSTVRVWDVNTGEMVNTLIHHCEAVLHLRFSNGMMVTCSKDRSIAVWDMVSP 344
+I+ S D T+++WD T V TL H V S AV+ P
Sbjct: 199 PYMITASDDLTIKIWDYQTKSCVATLEGHMSNV-----------------SFAVFHPTLP 241
Query: 345 NEITLRRVLVGHRAAVNVVDFDEKYIVSASGDRTIKVWNTSSCEFVRTLN 394
I+S S D T+K+WN+S+ + +TLN
Sbjct: 242 ------------------------IIISGSEDGTLKIWNSSTYKVEKTLN 267
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 106 DFISLLPNFDEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYRDRL--VVSGS 163
+++ P D+ Y+++AS D TIK+W+ + V TL GH ++ + L ++SGS
Sbjct: 188 NYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGS 247
Query: 164 SDNTIR 169
D T++
Sbjct: 248 EDGTLK 253
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 11/75 (14%)
Query: 119 IVSASGDRTIKVWNTSSCEFVRTLN-GHKRGIACLQY---RDRLVVSGSSDNTIRYRDEF 174
I+S S D T+K+WN+S+ + +TLN G +R + R + SG + + F
Sbjct: 243 IISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASG-------FDNGF 295
Query: 175 QIVSSSHDDTILIWD 189
++S +D+ L D
Sbjct: 296 TVLSLGNDEPTLSLD 310
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 114/231 (49%), Gaps = 22/231 (9%)
Query: 246 KIVSGLRDNTIKVWDRVSLQCIKVLTGHTG--SVLCLQYDERVIISGSSDSTVR---VWD 300
K+ S RD T+++W + V+ G + +C ++ +++ G D+ + ++
Sbjct: 31 KVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTXINGVPLFA 90
Query: 301 VNTGEMVNTLIHHCEAVLHLRFSNGMMVTCSKDRSIAVWDMVSPNEITLRRVLVGHRAAV 360
+ + + TLI H V L F +G++++ S D++ VW E +L L H A+V
Sbjct: 91 TSGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVW-----KEGSLVYNLQAHNASV 145
Query: 361 ---NVVDFDEKYIVSASGDRTIKVWNTSSCEFVRTLNG-HK---RGIACLQYRDRLVVSG 413
VV F E ++AS D+TIK+W + ++T +G H R +A + D +S
Sbjct: 146 WDAKVVSFSENKFLTASADKTIKLWQND--KVIKTFSGIHNDVVRHLAVVD--DGHFISC 201
Query: 414 SSDNTIRLWDIECGACLRVLEGHEELVRCIR-FDAKRIVSGAYDGKIKVWN 463
S+D I+L D G LR EGHE V CI+ IVS D +++W+
Sbjct: 202 SNDGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWS 252
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 86/170 (50%), Gaps = 13/170 (7%)
Query: 270 LTGHTGSVLCLQYDERVIISGSSDSTVRVWDVNTGEMVNTLIHHCEAVLHLR---FSNGM 326
L GH G+V L + + V+ISGS D T +VW G +V L H +V + FS
Sbjct: 100 LIGHQGNVCSLSFQDGVVISGSWDKTAKVW--KEGSLVYNLQAHNASVWDAKVVSFSENK 157
Query: 327 MVTCSKDRSIAVW--DMVSPNEITLRRVLVGHRAAVNVVDFDEKYIVSASGDRTIKVWNT 384
+T S D++I +W D V + +V H A V D+ + +S S D IK+ +
Sbjct: 158 FLTASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVV-----DDGHFISCSNDGLIKLVDX 212
Query: 385 SSCEFVRTLNGHKRGIACLQYR-DRLVVSGSSDNTIRLWDIECGACLRVL 433
+ + +RT GH+ + C++ + +VS D T+R+W E G+ +V+
Sbjct: 213 HTGDVLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQVI 262
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 91/197 (46%), Gaps = 16/197 (8%)
Query: 237 VYCLQYDDHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVL---CLQYDERVIISGSSD 293
V L + D ++SG D T KVW SL + L H SV + + E ++ S+D
Sbjct: 107 VCSLSFQDGVVISGSWDKTAKVWKEGSL--VYNLQAHNASVWDAKVVSFSENKFLTASAD 164
Query: 294 STVRVWDVNTGEMVNTLIHHCEAVLHLR-FSNGMMVTCSKDRSIAVWDMVSPNEITLRRV 352
T+++W + + IH+ + V HL +G ++CS D I +V + + R
Sbjct: 165 KTIKLWQNDKVIKTFSGIHN-DVVRHLAVVDDGHFISCSNDGLIK---LVDXHTGDVLRT 220
Query: 353 LVGHRAAVNVVD-FDEKYIVSASGDRTIKVWN--TSSCEFVRTLNGHK-RGIACLQYRDR 408
GH + V + IVS DRT+++W+ S + V TL + C D
Sbjct: 221 YEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCXSNGD- 279
Query: 409 LVVSGSSDNTIRLWDIE 425
++ GSSDN +R++ E
Sbjct: 280 -IIVGSSDNLVRIFSQE 295
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/231 (22%), Positives = 98/231 (42%), Gaps = 59/231 (25%)
Query: 128 IKVWNTSSCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRYRDEFQIVSSSHDDTILI 187
+ ++ TS + + TL GH+ + L ++D +V+SGS D T + E +V + +
Sbjct: 86 VPLFATSGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWKEGSLVYNLQAHNASV 145
Query: 188 WDFLNYSETPIQXXXXXXXXXXXXXIENNWRMGKFLLQRINCRSENSKGVYCLQYDDHKI 247
WD + + ++K
Sbjct: 146 WD-----------------------------------------------AKVVSFSENKF 158
Query: 248 VSGLRDNTIKVW--DRVSLQCIKVLTG-HTGSVLCLQ-YDERVIISGSSDSTVRVWDVNT 303
++ D TIK+W D+V IK +G H V L D+ IS S+D +++ D +T
Sbjct: 159 LTASADKTIKLWQNDKV----IKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDXHT 214
Query: 304 GEMVNTLIHHCEAVLHLR-FSNGMMVTCSKDRSIAVWDMVSPNEITLRRVL 353
G+++ T H V ++ NG +V+C +DR++ +W S +L++V+
Sbjct: 215 GDVLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIW---SKENGSLKQVI 262
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 103 LQRDFISLLPNFDEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYR-DRLVVS 161
+ D + L D+ + +S S D IK+ + + + +RT GH+ + C++ + +VS
Sbjct: 182 IHNDVVRHLAVVDDGHFISCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGDIVS 241
Query: 162 GSSDNTIR 169
D T+R
Sbjct: 242 CGEDRTVR 249
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 50/228 (21%), Positives = 83/228 (36%), Gaps = 49/228 (21%)
Query: 113 NFDEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRYRD 172
+F + ++S S D+T KVW S V L H + D VVS S
Sbjct: 111 SFQDGVVISGSWDKTAKVWKEGS--LVYNLQAHNASV-----WDAKVVSFS--------- 154
Query: 173 EFQIVSSSHDDTILIWDFLNYSETPIQXXXXXXXXXXXXXIENNWRMGKFLLQRINCRSE 232
E + +++S D TI +W +N+ + F
Sbjct: 155 ENKFLTASADKTIKLW-------------------------QNDKVIKTF------SGIH 183
Query: 233 NSKGVYCLQYDDHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVLCLQ-YDERVIISGS 291
N + DD +S D IK+ D + ++ GH V C++ I+S
Sbjct: 184 NDVVRHLAVVDDGHFISCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGDIVSCG 243
Query: 292 SDSTVRVWDVNTGEMVNTLIHHCEAVLHLR-FSNGMMVTCSKDRSIAV 338
D TVR+W G + + ++ + SNG ++ S D + +
Sbjct: 244 EDRTVRIWSKENGSLKQVITLPAISIWSVDCXSNGDIIVGSSDNLVRI 291
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 84/164 (51%), Gaps = 11/164 (6%)
Query: 239 CLQYDDHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVLCLQY--DERVIISGSSDSTV 296
C D +I S D T++V+ + + + + H VLC + D+R I + S D V
Sbjct: 628 CFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKV 687
Query: 297 RVWDVNTGEMVNTLIHHCEAVLHLRFSNG----MMVTCSKDRSIAVWDMVSPNEITLRRV 352
++W+ TGE+V+T H E V F+N ++ T S D + +WD+ N+ R
Sbjct: 688 KIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDL---NQKECRNT 744
Query: 353 LVGHRAAVNVVDF--DEKYIVSASGDRTIKVWNTSSCEFVRTLN 394
+ GH +VN F D+K + S S D T+K+W+ +S +++N
Sbjct: 745 MFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSIN 788
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 82/165 (49%), Gaps = 13/165 (7%)
Query: 313 HCEAVLHLRFSNG--MMVTCSKDRSIAVWDMVSPNEITLRRVLVGHRAAVNVVDF--DEK 368
H +AV H FS + +C D+++ V+ + ++ + H V F D++
Sbjct: 620 HTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLL---EIKAHEDEVLCCAFSTDDR 676
Query: 369 YIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYRDR----LVVSGSSDNTIRLWDI 424
+I + S D+ +K+WN+ + E V T + H + C + + L+ +GSSD ++LWD+
Sbjct: 677 FIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDL 736
Query: 425 ECGACLRVLEGHEELVRCIRF--DAKRIVSGAYDGKIKVWNLVAA 467
C + GH V RF D K + S + DG +K+W+ +A
Sbjct: 737 NQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSA 781
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 60/245 (24%), Positives = 108/245 (44%), Gaps = 28/245 (11%)
Query: 243 DDHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVLCLQYDER----VIISGSSDSTVRV 298
DD I + D +K+W+ ++ + + H+ V C + ++ +GSSD +++
Sbjct: 674 DDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKL 733
Query: 299 WDVNTGEMVNTLIHHCEAVLHLRFS--NGMMVTCSKDRSIAVWDMVSPNEITLRRVLVGH 356
WD+N E NT+ H +V H RFS + ++ +CS D ++ +WD S NE R+ +
Sbjct: 734 WDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANE---RKSINVK 790
Query: 357 RAAVNVVDFDEKYIV-------SASGDRTIKVWNTSSCEFVRTLNG-----HKRGIACLQ 404
+ +N+ D E V SA G R + F +G H + +Q
Sbjct: 791 QFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNKIFLFDIHTSGLLGEIHTGHHSTIQ 850
Query: 405 Y-----RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DAKRIVSGAYDG 457
Y ++ L V S + LW+ + + + GH V + F D ++ + D
Sbjct: 851 YCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQ 910
Query: 458 KIKVW 462
I++W
Sbjct: 911 TIRLW 915
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/268 (26%), Positives = 117/268 (43%), Gaps = 30/268 (11%)
Query: 224 LQRINCRS-------ENSKGVYCLQYDDHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGS 276
LQ IN R+ E CL I G + I++ + V+ + + H +
Sbjct: 952 LQLINGRTGQIDYLTEAQVSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKT 1011
Query: 277 VLCLQY--DERVIISGSSDSTVRVWDVNTGEMVNTLIHHCEAVLHLRF-SNGMMVTCSKD 333
V +Q+ DE+ +IS S D+ ++VW+ + + L H E V R N +++ S D
Sbjct: 1012 VWHIQFTADEKTLISSSDDAEIQVWNWQLDKCI-FLRGHQETVKDFRLLKNSRLLSWSFD 1070
Query: 334 RSIAVWDMVSPNEITLRRVLVGHRAAVNVVDF--DEKYIVSASGDRTIKVWNTSSCEFVR 391
++ VW++++ N+ + V H+ V D D S S D+T K+W+ +
Sbjct: 1071 GTVKVWNIITGNK---EKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLH 1127
Query: 392 TLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVL-----EG---HEELVR 441
L GH + C + L+ +G + IR+W++ G L + EG H V
Sbjct: 1128 ELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVT 1187
Query: 442 --CIRFDAKRIVSGAYDGKIKVWNLVAA 467
C D K ++S G IK WN+V
Sbjct: 1188 DLCFSPDGKMLISAG--GYIKWWNVVTG 1213
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 84/428 (19%), Positives = 174/428 (40%), Gaps = 95/428 (22%)
Query: 115 DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYRDR----LVVSGSSD----- 165
D+++I + S D+ +K+WN+ + E V T + H + C + + L+ +GSSD
Sbjct: 674 DDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKL 733
Query: 166 -------------------NTIRYR-DEFQIVSSSHDDTILIWDFLNYSETPIQXXXXXX 205
N R+ D+ + S S D T+ +WD + +E
Sbjct: 734 WDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANE---------- 783
Query: 206 XXXXXXXIENNWRMGKFLLQRINCRSENSKGVYCLQY--DDHKIVSGLRDNTIKVWD-RV 262
+ + +F L + + + V C + D +I+ + N I ++D
Sbjct: 784 --------RKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAK-NKIFLFDIHT 834
Query: 263 SLQCIKVLTGHTGSVLCLQYDER--VIISGSSDSTVRVWDVNTGEMVNTLIHHCEAVLHL 320
S ++ TGH ++ + + + + S V +W+ ++ V H V +
Sbjct: 835 SGLLGEIHTGHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGV 894
Query: 321 RFS--NGMMVTCSKDRSIAVWD------------------MVSPNEIT------LRRVLV 354
FS +T S D++I +W+ + NE+ +RR+ +
Sbjct: 895 MFSPDGSSFLTSSDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENEVMVLAVDHIRRLQL 954
Query: 355 --GHRAAVNVVDFDE----------KYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIAC 402
G ++ + + +YI + I++ + ++ HK+ +
Sbjct: 955 INGRTGQIDYLTEAQVSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWH 1014
Query: 403 LQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIR-FDAKRIVSGAYDGKI 459
+Q+ ++ ++S S D I++W+ + C+ L GH+E V+ R R++S ++DG +
Sbjct: 1015 IQFTADEKTLISSSDDAEIQVWNWQLDKCI-FLRGHQETVKDFRLLKNSRLLSWSFDGTV 1073
Query: 460 KVWNLVAA 467
KVWN++
Sbjct: 1074 KVWNIITG 1081
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 79/165 (47%), Gaps = 13/165 (7%)
Query: 269 VLTGHTGSVL--CLQYDERVIISGSSDSTVRVWDVNTGEMVNTLIHHCEAVLHLRFS--N 324
V+ HT +V C D + I S +D T++V+ TGE + + H + VL FS +
Sbjct: 616 VVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDD 675
Query: 325 GMMVTCSKDRSIAVWDMVSPNEITLRRVLVGHRAAVNVVDFDEK----YIVSASGDRTIK 380
+ TCS D+ + +W+ ++ L H VN F + + S D +K
Sbjct: 676 RFIATCSVDKKVKIWNSMTGE---LVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLK 732
Query: 381 VWNTSSCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWD 423
+W+ + E T+ GH + ++ D+L+ S S+D T++LWD
Sbjct: 733 LWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWD 777
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 95/233 (40%), Gaps = 44/233 (18%)
Query: 172 DEFQIVSSSHDDTILIWDFLNYSETPIQXXXXXXXXXXXXXIENNWRMGKFLLQRINCRS 231
DE ++SSS D I +W NW++ K + R
Sbjct: 1020 DEKTLISSSDDAEIQVW---------------------------NWQLDKCIFLR--GHQ 1050
Query: 232 ENSKGVYCLQYDDHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVLC--LQYDERVIIS 289
E K L+ + +++S D T+KVW+ ++ K H G+VL + +D S
Sbjct: 1051 ETVKDFRLLK--NSRLLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSS 1108
Query: 290 GSSDSTVRVWDVNTGEMVNTLIHHCEAVLHLRFS--NGMMVTCSKDRSIAVWDMVSPNEI 347
S+D T ++W + ++ L H V FS + ++ T + I +W++ + +
Sbjct: 1109 TSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELL 1168
Query: 348 TLRRVLVGHRAAVN---VVDF----DEKYIVSASGDRTIKVWNTSSCEFVRTL 393
L L AA + V D D K ++SA G IK WN + E +T
Sbjct: 1169 HLCAPLSEEGAATHGGWVTDLCFSPDGKMLISAGG--YIKWWNVVTGESSQTF 1219
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 7/85 (8%)
Query: 401 ACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DAKRIVSGAYDGK 458
AC + + S +D T++++ E G L ++ HE+ V C F D + I + + D K
Sbjct: 627 ACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKK 686
Query: 459 IKVWN-----LVAALDPRAPTTTLC 478
+K+WN LV D + C
Sbjct: 687 VKIWNSMTGELVHTYDEHSEQVNCC 711
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 106/242 (43%), Gaps = 22/242 (9%)
Query: 243 DDHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVLCLQYDER----VIISGSSDSTVRV 298
DD I + D +K+WD + + + H+ V C + + ++ +GS+D +++
Sbjct: 675 DDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKL 734
Query: 299 WDVNTGEMVNTLIHHCEAVLHLRFS--NGMMVTCSKDRSIAVWDMVSPNE---ITLRRVL 353
WD+N E NT+ H +V H RFS + ++ +CS D ++ +WD+ S NE I ++R
Sbjct: 735 WDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFF 794
Query: 354 VGHRAAVNVVDF---------DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQ 404
+ V+ D I+ A+ ++ + +S GH I
Sbjct: 795 LSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCD 854
Query: 405 YR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DAKRIVSGAYDGKIK 460
+ D L V S + LW+I+ + GH V + F D ++ + D I+
Sbjct: 855 FSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIR 914
Query: 461 VW 462
VW
Sbjct: 915 VW 916
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 83/164 (50%), Gaps = 11/164 (6%)
Query: 239 CLQYDDHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVLCLQY--DERVIISGSSDSTV 296
C D +I S D T++V+ + + + + H VLC + D+ I + S+D V
Sbjct: 629 CFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKV 688
Query: 297 RVWDVNTGEMVNTLIHHCEAVLHLRFSNG----MMVTCSKDRSIAVWDMVSPNEITLRRV 352
++WD TG++V+T H E V F+N ++ T S D + +WD+ N+ R
Sbjct: 689 KIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL---NQKECRNT 745
Query: 353 LVGHRAAVNVVDF--DEKYIVSASGDRTIKVWNTSSCEFVRTLN 394
+ GH +VN F D++ + S S D T+++W+ S +++N
Sbjct: 746 MFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSIN 789
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 109/247 (44%), Gaps = 24/247 (9%)
Query: 239 CLQYDDHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVLCLQY--DERVIISGSSDSTV 296
CL + G D IK+ + + + GH +V +Q+ D + +IS S DS +
Sbjct: 975 CLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVI 1034
Query: 297 RVWDVNTGEMVNTLIHHCEAVLHLRF-SNGMMVTCSKDRSIAVWDMVSPNEITLRRVLVG 355
+VW+ TG+ V L H E V R + +++ S D ++ VW++++ + R
Sbjct: 1035 QVWNWQTGDYV-FLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGR---IERDFTC 1090
Query: 356 HRAAV--NVVDFDEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYR--DRLVV 411
H+ V + D S S D+T K+W+ + L GH + C + L+
Sbjct: 1091 HQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLA 1150
Query: 412 SGSSDNTIRLWDIECG------ACLRVLEG---HEELVR--CIRFDAKRIVSGAYDGKIK 460
+G + IR+W++ G A + V EG H V C D+K +VS G +K
Sbjct: 1151 TGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLK 1208
Query: 461 VWNLVAA 467
WN+
Sbjct: 1209 WWNVATG 1215
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 110/233 (47%), Gaps = 25/233 (10%)
Query: 251 LRDNTIKVWDRVSLQCIKVLTGHTG----------SVLCLQYDERVIISGSSDSTVRVWD 300
++N V +++ ++++ G TG S CL + G D +++ +
Sbjct: 937 FQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIE 996
Query: 301 VNTGEMVNTLIHHCEAVLHLRFS--NGMMVTCSKDRSIAVWDMVSPNEITLRRVLVGHRA 358
+ + ++ + H +AV H++F+ +++ S+D I VW+ + + + L+ H+
Sbjct: 997 LPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQ----AHQE 1052
Query: 359 AVNVVDF---DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGI-ACLQYRDRLVVSG- 413
V DF + ++S S D T+KVWN + R H+ + +C D S
Sbjct: 1053 TVK--DFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSST 1110
Query: 414 SSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DAKRIVSGAYDGKIKVWNL 464
S+D T ++W + + L L+GH VRC F D + +G +G+I++WN+
Sbjct: 1111 SADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNV 1163
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 82/428 (19%), Positives = 172/428 (40%), Gaps = 95/428 (22%)
Query: 115 DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYRDR----LVVSGSSD----- 165
D+ YI + S D+ +K+W++++ + V T + H + C + ++ L+ +GS+D
Sbjct: 675 DDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKL 734
Query: 166 -------------------NTIRYR-DEFQIVSSSHDDTILIWDFLNYSETPIQXXXXXX 205
N R+ D+ + S S D T+ +WD + +E
Sbjct: 735 WDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANE---------- 784
Query: 206 XXXXXXXIENNWRMGKFLLQRINCRSENSKGVYCLQY--DDHKIVSGLRDNTIKVWDRVS 263
+ + +F L + + V C + D KI+ ++ + S
Sbjct: 785 --------RKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTS 836
Query: 264 LQCIKVLTGHTGSVLCLQ---YDERVIISGSSDSTVRVWDVNTGEMVNTLIHHCEAVLHL 320
++ TGH ++ YD +I+ S V +W++++ V H V +
Sbjct: 837 GLLAEIHTGHHSTIQYCDFSPYDHLAVIA-LSQYCVELWNIDSRLKVADCRGHLSWVHGV 895
Query: 321 RFS--NGMMVTCSKDRSIAVWD--------------------------MVSPNEITLRRV 352
FS +T S D++I VW+ +++ + I ++
Sbjct: 896 MFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQL 955
Query: 353 LVGHRAAVNVVDFDE----------KYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIAC 402
+ G ++ + + +Y+ D IK+ + + GHK+ +
Sbjct: 956 IAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRH 1015
Query: 403 LQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIR-FDAKRIVSGAYDGKI 459
+Q+ + ++S S D+ I++W+ + G + L+ H+E V+ R R++S ++DG +
Sbjct: 1016 IQFTADGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQDSRLLSWSFDGTV 1074
Query: 460 KVWNLVAA 467
KVWN++
Sbjct: 1075 KVWNVITG 1082
Score = 68.2 bits (165), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 79/166 (47%), Gaps = 13/166 (7%)
Query: 269 VLTGHTGSVL--CLQYDERVIISGSSDSTVRVWDVNTGEMVNTLIHHCEAVLHLRFS--N 324
V+ HT +V C D + I S +D T++V+ TGE + + H + VL FS +
Sbjct: 617 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDD 676
Query: 325 GMMVTCSKDRSIAVWDMVSPNEITLRRVLVGHRAAVNVVDFDEK----YIVSASGDRTIK 380
+ TCS D+ + +WD + L H VN F K + + S D +K
Sbjct: 677 SYIATCSADKKVKIWDSATGK---LVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLK 733
Query: 381 VWNTSSCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDI 424
+W+ + E T+ GH + ++ D L+ S S+D T+RLWD+
Sbjct: 734 LWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDV 779
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 70/340 (20%), Positives = 132/340 (38%), Gaps = 82/340 (24%)
Query: 115 DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRYRDEF 174
D + I S D+T++V+ + E + + H+ + C + SSD++
Sbjct: 633 DGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAF--------SSDDSY------ 678
Query: 175 QIVSSSHDDTILIWDFLNYSETPIQXXXXXXXXXXXXXIENNWRMGKFLLQRINCRSENS 234
I + S D + IWD S T GK ++ E+S
Sbjct: 679 -IATCSADKKVKIWD----SAT-----------------------GKL----VHTYDEHS 706
Query: 235 KGVYCLQYDDHK----IVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVLCLQY--DERVII 288
+ V C + + + +G D +K+WD +C + GHT SV ++ D+ ++
Sbjct: 707 EQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLA 766
Query: 289 SGSSDSTVRVWDVNTG-------------------EMVNTLIHHCEAVLHLRFSNGMMVT 329
S S+D T+R+WDV + E V ++ C ++G +
Sbjct: 767 SCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWS-----ADGDKII 821
Query: 330 CSKDRSIAVWDMVSPNEITLRRVLVGHRAAVNVVDFD--EKYIVSASGDRTIKVWNTSSC 387
+ + ++D+ + L + GH + + DF + V A +++WN S
Sbjct: 822 VAAKNKVLLFDIHTSG--LLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSR 879
Query: 388 EFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIE 425
V GH + + + ++ S D TIR+W+ +
Sbjct: 880 LKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETK 919
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 69/305 (22%), Positives = 118/305 (38%), Gaps = 62/305 (20%)
Query: 101 PMLQRDFISLLPNFDEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYRDRLVV 160
P Q L P+ + Y+ D IK+ + + GHK+ + +Q+
Sbjct: 967 PEAQVSCCCLSPHLE--YVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFT----- 1019
Query: 161 SGSSDNTIRYRDEFQIVSSSHDDTILIWDFLNYSETPIQXXXXXXXXXXXXXIENNWRMG 220
D ++SSS D I +W NW+ G
Sbjct: 1020 ----------ADGKTLISSSEDSVIQVW---------------------------NWQTG 1042
Query: 221 KFLLQRINCRSENSKGVYCLQYDDHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVL-- 278
++ + E K LQ D +++S D T+KVW+ ++ + + T H G+VL
Sbjct: 1043 DYVF--LQAHQETVKDFRLLQ--DSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSC 1098
Query: 279 CLQYDERVIISGSSDSTVRVWDVNTGEMVNTLIHHCEAVLHLRFS-NGMMVTCSKDRS-I 336
+ D S S+D T ++W + ++ L H V FS +G+++ D I
Sbjct: 1099 AISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEI 1158
Query: 337 AVWD------MVSPNEITLRRVLVGHRAAVNVVDF--DEKYIVSASGDRTIKVWNTSSCE 388
+W+ + S I++ H V V F D K +VSA G +K WN ++ +
Sbjct: 1159 RIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAGG--YLKWWNVATGD 1216
Query: 389 FVRTL 393
+T
Sbjct: 1217 SSQTF 1221
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Query: 401 ACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DAKRIVSGAYDGK 458
AC + + S +D T++++ E G L ++ HE+ V C F D I + + D K
Sbjct: 628 ACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKK 687
Query: 459 IKVWN-----LVAALDPRAPTTTLC 478
+K+W+ LV D + C
Sbjct: 688 VKIWDSATGKLVHTYDEHSEQVNCC 712
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 106/242 (43%), Gaps = 22/242 (9%)
Query: 243 DDHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVLCLQYDER----VIISGSSDSTVRV 298
DD I + D +K+WD + + + H+ V C + + ++ +GS+D +++
Sbjct: 668 DDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKL 727
Query: 299 WDVNTGEMVNTLIHHCEAVLHLRFS--NGMMVTCSKDRSIAVWDMVSPNE---ITLRRVL 353
WD+N E NT+ H +V H RFS + ++ +CS D ++ +WD+ S NE I ++R
Sbjct: 728 WDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFF 787
Query: 354 VGHRAAVNVVDF---------DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQ 404
+ V+ D I+ A+ ++ + +S GH I
Sbjct: 788 LSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCD 847
Query: 405 YR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DAKRIVSGAYDGKIK 460
+ D L V S + LW+I+ + GH V + F D ++ + D I+
Sbjct: 848 FSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIR 907
Query: 461 VW 462
VW
Sbjct: 908 VW 909
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 83/164 (50%), Gaps = 11/164 (6%)
Query: 239 CLQYDDHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVLCLQY--DERVIISGSSDSTV 296
C D +I S D T++V+ + + + + H VLC + D+ I + S+D V
Sbjct: 622 CFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKV 681
Query: 297 RVWDVNTGEMVNTLIHHCEAVLHLRFSNG----MMVTCSKDRSIAVWDMVSPNEITLRRV 352
++WD TG++V+T H E V F+N ++ T S D + +WD+ N+ R
Sbjct: 682 KIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL---NQKECRNT 738
Query: 353 LVGHRAAVNVVDF--DEKYIVSASGDRTIKVWNTSSCEFVRTLN 394
+ GH +VN F D++ + S S D T+++W+ S +++N
Sbjct: 739 MFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSIN 782
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 109/247 (44%), Gaps = 24/247 (9%)
Query: 239 CLQYDDHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVLCLQY--DERVIISGSSDSTV 296
CL + G D IK+ + + + GH +V +Q+ D + +IS S DS +
Sbjct: 968 CLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVI 1027
Query: 297 RVWDVNTGEMVNTLIHHCEAVLHLRF-SNGMMVTCSKDRSIAVWDMVSPNEITLRRVLVG 355
+VW+ TG+ V L H E V R + +++ S D ++ VW++++ + R
Sbjct: 1028 QVWNWQTGDYV-FLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGR---IERDFTC 1083
Query: 356 HRAAV--NVVDFDEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYR--DRLVV 411
H+ V + D S S D+T K+W+ + L GH + C + L+
Sbjct: 1084 HQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLA 1143
Query: 412 SGSSDNTIRLWDIECG------ACLRVLEG---HEELVR--CIRFDAKRIVSGAYDGKIK 460
+G + IR+W++ G A + V EG H V C D+K +VS G +K
Sbjct: 1144 TGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLK 1201
Query: 461 VWNLVAA 467
WN+
Sbjct: 1202 WWNVATG 1208
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 110/233 (47%), Gaps = 25/233 (10%)
Query: 251 LRDNTIKVWDRVSLQCIKVLTGHTG----------SVLCLQYDERVIISGSSDSTVRVWD 300
++N V +++ ++++ G TG S CL + G D +++ +
Sbjct: 930 FQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIE 989
Query: 301 VNTGEMVNTLIHHCEAVLHLRFS--NGMMVTCSKDRSIAVWDMVSPNEITLRRVLVGHRA 358
+ + ++ + H +AV H++F+ +++ S+D I VW+ + + + L+ H+
Sbjct: 990 LPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQ----AHQE 1045
Query: 359 AVNVVDF---DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGI-ACLQYRDRLVVSG- 413
V DF + ++S S D T+KVWN + R H+ + +C D S
Sbjct: 1046 TVK--DFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSST 1103
Query: 414 SSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DAKRIVSGAYDGKIKVWNL 464
S+D T ++W + + L L+GH VRC F D + +G +G+I++WN+
Sbjct: 1104 SADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNV 1156
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 82/428 (19%), Positives = 172/428 (40%), Gaps = 95/428 (22%)
Query: 115 DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYRDR----LVVSGSSD----- 165
D+ YI + S D+ +K+W++++ + V T + H + C + ++ L+ +GS+D
Sbjct: 668 DDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKL 727
Query: 166 -------------------NTIRYR-DEFQIVSSSHDDTILIWDFLNYSETPIQXXXXXX 205
N R+ D+ + S S D T+ +WD + +E
Sbjct: 728 WDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANE---------- 777
Query: 206 XXXXXXXIENNWRMGKFLLQRINCRSENSKGVYCLQY--DDHKIVSGLRDNTIKVWDRVS 263
+ + +F L + + V C + D KI+ ++ + S
Sbjct: 778 --------RKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTS 829
Query: 264 LQCIKVLTGHTGSVLCLQ---YDERVIISGSSDSTVRVWDVNTGEMVNTLIHHCEAVLHL 320
++ TGH ++ YD +I+ S V +W++++ V H V +
Sbjct: 830 GLLAEIHTGHHSTIQYCDFSPYDHLAVIA-LSQYCVELWNIDSRLKVADCRGHLSWVHGV 888
Query: 321 RFS--NGMMVTCSKDRSIAVWD--------------------------MVSPNEITLRRV 352
FS +T S D++I VW+ +++ + I ++
Sbjct: 889 MFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQL 948
Query: 353 LVGHRAAVNVVDFDE----------KYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIAC 402
+ G ++ + + +Y+ D IK+ + + GHK+ +
Sbjct: 949 IAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRH 1008
Query: 403 LQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIR-FDAKRIVSGAYDGKI 459
+Q+ + ++S S D+ I++W+ + G + L+ H+E V+ R R++S ++DG +
Sbjct: 1009 IQFTADGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQDSRLLSWSFDGTV 1067
Query: 460 KVWNLVAA 467
KVWN++
Sbjct: 1068 KVWNVITG 1075
Score = 68.2 bits (165), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 79/166 (47%), Gaps = 13/166 (7%)
Query: 269 VLTGHTGSVL--CLQYDERVIISGSSDSTVRVWDVNTGEMVNTLIHHCEAVLHLRFS--N 324
V+ HT +V C D + I S +D T++V+ TGE + + H + VL FS +
Sbjct: 610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDD 669
Query: 325 GMMVTCSKDRSIAVWDMVSPNEITLRRVLVGHRAAVNVVDFDEK----YIVSASGDRTIK 380
+ TCS D+ + +WD + L H VN F K + + S D +K
Sbjct: 670 SYIATCSADKKVKIWDSATGK---LVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLK 726
Query: 381 VWNTSSCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDI 424
+W+ + E T+ GH + ++ D L+ S S+D T+RLWD+
Sbjct: 727 LWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDV 772
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 70/340 (20%), Positives = 132/340 (38%), Gaps = 82/340 (24%)
Query: 115 DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRYRDEF 174
D + I S D+T++V+ + E + + H+ + C + SSD++
Sbjct: 626 DGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAF--------SSDDSY------ 671
Query: 175 QIVSSSHDDTILIWDFLNYSETPIQXXXXXXXXXXXXXIENNWRMGKFLLQRINCRSENS 234
I + S D + IWD S T GK ++ E+S
Sbjct: 672 -IATCSADKKVKIWD----SAT-----------------------GKL----VHTYDEHS 699
Query: 235 KGVYCLQYDDHK----IVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVLCLQY--DERVII 288
+ V C + + + +G D +K+WD +C + GHT SV ++ D+ ++
Sbjct: 700 EQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLA 759
Query: 289 SGSSDSTVRVWDVNTG-------------------EMVNTLIHHCEAVLHLRFSNGMMVT 329
S S+D T+R+WDV + E V ++ C ++G +
Sbjct: 760 SCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWS-----ADGDKII 814
Query: 330 CSKDRSIAVWDMVSPNEITLRRVLVGHRAAVNVVDFD--EKYIVSASGDRTIKVWNTSSC 387
+ + ++D+ + L + GH + + DF + V A +++WN S
Sbjct: 815 VAAKNKVLLFDIHTSG--LLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSR 872
Query: 388 EFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIE 425
V GH + + + ++ S D TIR+W+ +
Sbjct: 873 LKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETK 912
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 69/305 (22%), Positives = 118/305 (38%), Gaps = 62/305 (20%)
Query: 101 PMLQRDFISLLPNFDEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYRDRLVV 160
P Q L P+ + Y+ D IK+ + + GHK+ + +Q+
Sbjct: 960 PEAQVSCCCLSPHLE--YVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFT----- 1012
Query: 161 SGSSDNTIRYRDEFQIVSSSHDDTILIWDFLNYSETPIQXXXXXXXXXXXXXIENNWRMG 220
D ++SSS D I +W NW+ G
Sbjct: 1013 ----------ADGKTLISSSEDSVIQVW---------------------------NWQTG 1035
Query: 221 KFLLQRINCRSENSKGVYCLQYDDHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVL-- 278
++ + E K LQ D +++S D T+KVW+ ++ + + T H G+VL
Sbjct: 1036 DYVF--LQAHQETVKDFRLLQ--DSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSC 1091
Query: 279 CLQYDERVIISGSSDSTVRVWDVNTGEMVNTLIHHCEAVLHLRFS-NGMMVTCSKDRS-I 336
+ D S S+D T ++W + ++ L H V FS +G+++ D I
Sbjct: 1092 AISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEI 1151
Query: 337 AVWD------MVSPNEITLRRVLVGHRAAVNVVDF--DEKYIVSASGDRTIKVWNTSSCE 388
+W+ + S I++ H V V F D K +VSA G +K WN ++ +
Sbjct: 1152 RIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAGG--YLKWWNVATGD 1209
Query: 389 FVRTL 393
+T
Sbjct: 1210 SSQTF 1214
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Query: 401 ACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DAKRIVSGAYDGK 458
AC + + S +D T++++ E G L ++ HE+ V C F D I + + D K
Sbjct: 621 ACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKK 680
Query: 459 IKVWN-----LVAALDPRAPTTTLC 478
+K+W+ LV D + C
Sbjct: 681 VKIWDSATGKLVHTYDEHSEQVNCC 705
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 75.1 bits (183), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 106/223 (47%), Gaps = 10/223 (4%)
Query: 254 NTIKVWDRVSLQCIKVLTGHTGSVLCLQY--DERVIISGSSDSTVRVWDVNTGEMVNTLI 311
N I R+ ++ + L GH + + + D R+++S S D + +WD T V+ +
Sbjct: 35 NNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIP 94
Query: 312 HHCEAVLHLRFS-NGMMVTCSK-DRSIAVWDMVS-PNEITLRRVLVGHRAAVNVVDF-DE 367
V+ ++ +G V C D +++++ + + + R L GH ++ F D+
Sbjct: 95 LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD 154
Query: 368 KYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIE 425
IV++SGD T +W+ + + T GH + L RL VSG+ D + +LWD+
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 214
Query: 426 CGACLRVLEGHEELVRCIRF--DAKRIVSGAYDGKIKVWNLVA 466
G C + GHE + I F + +G+ D ++++L A
Sbjct: 215 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA 257
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 100/206 (48%), Gaps = 16/206 (7%)
Query: 270 LTGHTGSVLCLQY-DERVIISGSSDSTVRVWDVNTGEMVNTLIHHCEAVLHLRFS--NGM 326
L GHTG + C ++ D+ I++ S D+T +WD+ TG+ T H V+ L + +
Sbjct: 139 LAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRL 198
Query: 327 MVTCSKDRSIAVWDMVSPNEITLRRVLVGHRAAVNVVDF--DEKYIVSASGDRTIKVWNT 384
V+ + D S +WD+ E R+ GH + +N + F + + S D T ++++
Sbjct: 199 FVSGACDASAKLWDV---REGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL 255
Query: 385 SSCEFVRTLNGHKR---GIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEEL 439
+ + + T + H GI + + RL+++G D +WD VL GH+
Sbjct: 256 RADQELMTYS-HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNR 314
Query: 440 VRCIRF--DAKRIVSGAYDGKIKVWN 463
V C+ D + +G++D +K+WN
Sbjct: 315 VSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 93/196 (47%), Gaps = 15/196 (7%)
Query: 239 CLQYDDHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVLCLQY--DERVIISGSSDSTV 296
C DD++IV+ D T +WD + Q TGHTG V+ L D R+ +SG+ D++
Sbjct: 149 CRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASA 208
Query: 297 RVWDVNTGEMVNTLIHHCEAVLHL-RFSNG-MMVTCSKDRSIAVWDMVSPNEI---TLRR 351
++WDV G T H + + F NG T S D + ++D+ + E+ +
Sbjct: 209 KLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDN 268
Query: 352 VLVGHRAAVNVVDFDE--KYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYRD-- 407
++ G + V F + + +++ D VW+ + L GH ++CL D
Sbjct: 269 IICG----ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDG 324
Query: 408 RLVVSGSSDNTIRLWD 423
V +GS D+ +++W+
Sbjct: 325 MAVATGSWDSFLKIWN 340
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 75/202 (37%), Gaps = 54/202 (26%)
Query: 106 DFISLLPNFDEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGI--ACLQYRDRLVVSGS 163
D +SL D + VS + D + K+W+ +T GH+ I C +GS
Sbjct: 186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS 245
Query: 164 SDNTIR---YRDEFQIVSSSHDDTILIWDFLNYSETPIQXXXXXXXXXXXXXIENNWRMG 220
D T R R + ++++ SHD+ I +++S++ G
Sbjct: 246 DDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS-----------------------G 282
Query: 221 KFLLQRINCRSENSKGVYCLQYDDHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVLCL 280
+ LL +G D VWD + VL GH V CL
Sbjct: 283 RLLL------------------------AGYDDFNCNVWDALKADRAGVLAGHDNRVSCL 318
Query: 281 QY--DERVIISGSSDSTVRVWD 300
D + +GS DS +++W+
Sbjct: 319 GVTDDGMAVATGSWDSFLKIWN 340
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 75.1 bits (183), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 106/223 (47%), Gaps = 10/223 (4%)
Query: 254 NTIKVWDRVSLQCIKVLTGHTGSVLCLQY--DERVIISGSSDSTVRVWDVNTGEMVNTLI 311
N I R+ ++ + L GH + + + D R+++S S D + +WD T V+ +
Sbjct: 35 NNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIP 94
Query: 312 HHCEAVLHLRFS-NGMMVTCSK-DRSIAVWDMVS-PNEITLRRVLVGHRAAVNVVDF-DE 367
V+ ++ +G V C D +++++ + + + R L GH ++ F D+
Sbjct: 95 LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD 154
Query: 368 KYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIE 425
IV++SGD T +W+ + + T GH + L RL VSG+ D + +LWD+
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 214
Query: 426 CGACLRVLEGHEELVRCIRF--DAKRIVSGAYDGKIKVWNLVA 466
G C + GHE + I F + +G+ D ++++L A
Sbjct: 215 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA 257
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 100/206 (48%), Gaps = 16/206 (7%)
Query: 270 LTGHTGSVLCLQY-DERVIISGSSDSTVRVWDVNTGEMVNTLIHHCEAVLHLRFS--NGM 326
L GHTG + C ++ D+ I++ S D+T +WD+ TG+ T H V+ L + +
Sbjct: 139 LAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRL 198
Query: 327 MVTCSKDRSIAVWDMVSPNEITLRRVLVGHRAAVNVVDF--DEKYIVSASGDRTIKVWNT 384
V+ + D S +WD+ E R+ GH + +N + F + + S D T ++++
Sbjct: 199 FVSGACDASAKLWDV---REGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL 255
Query: 385 SSCEFVRTLNGHKR---GIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEEL 439
+ + + T + H GI + + RL+++G D +WD VL GH+
Sbjct: 256 RADQELMTYS-HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNR 314
Query: 440 VRCIRF--DAKRIVSGAYDGKIKVWN 463
V C+ D + +G++D +K+WN
Sbjct: 315 VSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 93/196 (47%), Gaps = 15/196 (7%)
Query: 239 CLQYDDHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVLCLQY--DERVIISGSSDSTV 296
C DD++IV+ D T +WD + Q TGHTG V+ L D R+ +SG+ D++
Sbjct: 149 CRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASA 208
Query: 297 RVWDVNTGEMVNTLIHHCEAVLHL-RFSNG-MMVTCSKDRSIAVWDMVSPNEI---TLRR 351
++WDV G T H + + F NG T S D + ++D+ + E+ +
Sbjct: 209 KLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDN 268
Query: 352 VLVGHRAAVNVVDFDE--KYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYRD-- 407
++ G + V F + + +++ D VW+ + L GH ++CL D
Sbjct: 269 IICG----ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDG 324
Query: 408 RLVVSGSSDNTIRLWD 423
V +GS D+ +++W+
Sbjct: 325 MAVATGSWDSFLKIWN 340
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 75/202 (37%), Gaps = 54/202 (26%)
Query: 106 DFISLLPNFDEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGI--ACLQYRDRLVVSGS 163
D +SL D + VS + D + K+W+ +T GH+ I C +GS
Sbjct: 186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS 245
Query: 164 SDNTIR---YRDEFQIVSSSHDDTILIWDFLNYSETPIQXXXXXXXXXXXXXIENNWRMG 220
D T R R + ++++ SHD+ I +++S++ G
Sbjct: 246 DDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS-----------------------G 282
Query: 221 KFLLQRINCRSENSKGVYCLQYDDHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVLCL 280
+ LL +G D VWD + VL GH V CL
Sbjct: 283 RLLL------------------------AGYDDFNCNVWDALKADRAGVLAGHDNRVSCL 318
Query: 281 QY--DERVIISGSSDSTVRVWD 300
D + +GS DS +++W+
Sbjct: 319 GVTDDGMAVATGSWDSFLKIWN 340
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 75.1 bits (183), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 106/223 (47%), Gaps = 10/223 (4%)
Query: 254 NTIKVWDRVSLQCIKVLTGHTGSVLCLQY--DERVIISGSSDSTVRVWDVNTGEMVNTLI 311
N I R+ ++ + L GH + + + D R+++S S D + +WD T V+ +
Sbjct: 46 NNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIP 105
Query: 312 HHCEAVLHLRFS-NGMMVTCSK-DRSIAVWDMVS-PNEITLRRVLVGHRAAVNVVDF-DE 367
V+ ++ +G V C D +++++ + + + R L GH ++ F D+
Sbjct: 106 LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD 165
Query: 368 KYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIE 425
IV++SGD T +W+ + + T GH + L RL VSG+ D + +LWD+
Sbjct: 166 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 225
Query: 426 CGACLRVLEGHEELVRCIRF--DAKRIVSGAYDGKIKVWNLVA 466
G C + GHE + I F + +G+ D ++++L A
Sbjct: 226 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA 268
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 100/206 (48%), Gaps = 16/206 (7%)
Query: 270 LTGHTGSVLCLQY-DERVIISGSSDSTVRVWDVNTGEMVNTLIHHCEAVLHLRFS--NGM 326
L GHTG + C ++ D+ I++ S D+T +WD+ TG+ T H V+ L + +
Sbjct: 150 LAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRL 209
Query: 327 MVTCSKDRSIAVWDMVSPNEITLRRVLVGHRAAVNVVDF--DEKYIVSASGDRTIKVWNT 384
V+ + D S +WD+ E R+ GH + +N + F + + S D T ++++
Sbjct: 210 FVSGACDASAKLWDV---REGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL 266
Query: 385 SSCEFVRTLNGHKR---GIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEEL 439
+ + + T + H GI + + RL+++G D +WD VL GH+
Sbjct: 267 RADQELMTYS-HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNR 325
Query: 440 VRCIRF--DAKRIVSGAYDGKIKVWN 463
V C+ D + +G++D +K+WN
Sbjct: 326 VSCLGVTDDGMAVATGSWDSFLKIWN 351
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 93/196 (47%), Gaps = 15/196 (7%)
Query: 239 CLQYDDHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVLCLQY--DERVIISGSSDSTV 296
C DD++IV+ D T +WD + Q TGHTG V+ L D R+ +SG+ D++
Sbjct: 160 CRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASA 219
Query: 297 RVWDVNTGEMVNTLIHHCEAVLHL-RFSNG-MMVTCSKDRSIAVWDMVSPNEI---TLRR 351
++WDV G T H + + F NG T S D + ++D+ + E+ +
Sbjct: 220 KLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDN 279
Query: 352 VLVGHRAAVNVVDFDE--KYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYRD-- 407
++ G + V F + + +++ D VW+ + L GH ++CL D
Sbjct: 280 IICG----ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDG 335
Query: 408 RLVVSGSSDNTIRLWD 423
V +GS D+ +++W+
Sbjct: 336 MAVATGSWDSFLKIWN 351
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 75/202 (37%), Gaps = 54/202 (26%)
Query: 106 DFISLLPNFDEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGI--ACLQYRDRLVVSGS 163
D +SL D + VS + D + K+W+ +T GH+ I C +GS
Sbjct: 197 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS 256
Query: 164 SDNTIR---YRDEFQIVSSSHDDTILIWDFLNYSETPIQXXXXXXXXXXXXXIENNWRMG 220
D T R R + ++++ SHD+ I +++S++ G
Sbjct: 257 DDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS-----------------------G 293
Query: 221 KFLLQRINCRSENSKGVYCLQYDDHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVLCL 280
+ LL +G D VWD + VL GH V CL
Sbjct: 294 RLLL------------------------AGYDDFNCNVWDALKADRAGVLAGHDNRVSCL 329
Query: 281 QY--DERVIISGSSDSTVRVWD 300
D + +GS DS +++W+
Sbjct: 330 GVTDDGMAVATGSWDSFLKIWN 351
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 75.1 bits (183), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 106/223 (47%), Gaps = 10/223 (4%)
Query: 254 NTIKVWDRVSLQCIKVLTGHTGSVLCLQY--DERVIISGSSDSTVRVWDVNTGEMVNTLI 311
N I R+ ++ + L GH + + + D R+++S S D + +WD T V+ +
Sbjct: 35 NNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIP 94
Query: 312 HHCEAVLHLRFS-NGMMVTCSK-DRSIAVWDMVS-PNEITLRRVLVGHRAAVNVVDF-DE 367
V+ ++ +G V C D +++++ + + + R L GH ++ F D+
Sbjct: 95 LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD 154
Query: 368 KYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIE 425
IV++SGD T +W+ + + T GH + L RL VSG+ D + +LWD+
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 214
Query: 426 CGACLRVLEGHEELVRCIRF--DAKRIVSGAYDGKIKVWNLVA 466
G C + GHE + I F + +G+ D ++++L A
Sbjct: 215 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA 257
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 100/206 (48%), Gaps = 16/206 (7%)
Query: 270 LTGHTGSVLCLQY-DERVIISGSSDSTVRVWDVNTGEMVNTLIHHCEAVLHLRFS--NGM 326
L GHTG + C ++ D+ I++ S D+T +WD+ TG+ T H V+ L + +
Sbjct: 139 LAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRL 198
Query: 327 MVTCSKDRSIAVWDMVSPNEITLRRVLVGHRAAVNVVDF--DEKYIVSASGDRTIKVWNT 384
V+ + D S +WD+ E R+ GH + +N + F + + S D T ++++
Sbjct: 199 FVSGACDASAKLWDV---REGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL 255
Query: 385 SSCEFVRTLNGHKR---GIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEEL 439
+ + + T + H GI + + RL+++G D +WD VL GH+
Sbjct: 256 RADQELMTYS-HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNR 314
Query: 440 VRCIRF--DAKRIVSGAYDGKIKVWN 463
V C+ D + +G++D +K+WN
Sbjct: 315 VSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 93/196 (47%), Gaps = 15/196 (7%)
Query: 239 CLQYDDHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVLCLQY--DERVIISGSSDSTV 296
C DD++IV+ D T +WD + Q TGHTG V+ L D R+ +SG+ D++
Sbjct: 149 CRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASA 208
Query: 297 RVWDVNTGEMVNTLIHHCEAVLHL-RFSNG-MMVTCSKDRSIAVWDMVSPNEI---TLRR 351
++WDV G T H + + F NG T S D + ++D+ + E+ +
Sbjct: 209 KLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDN 268
Query: 352 VLVGHRAAVNVVDFDE--KYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYRD-- 407
++ G + V F + + +++ D VW+ + L GH ++CL D
Sbjct: 269 IICG----ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDG 324
Query: 408 RLVVSGSSDNTIRLWD 423
V +GS D+ +++W+
Sbjct: 325 MAVATGSWDSFLKIWN 340
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 75/202 (37%), Gaps = 54/202 (26%)
Query: 106 DFISLLPNFDEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGI--ACLQYRDRLVVSGS 163
D +SL D + VS + D + K+W+ +T GH+ I C +GS
Sbjct: 186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS 245
Query: 164 SDNTIR---YRDEFQIVSSSHDDTILIWDFLNYSETPIQXXXXXXXXXXXXXIENNWRMG 220
D T R R + ++++ SHD+ I +++S++ G
Sbjct: 246 DDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS-----------------------G 282
Query: 221 KFLLQRINCRSENSKGVYCLQYDDHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVLCL 280
+ LL +G D VWD + VL GH V CL
Sbjct: 283 RLLL------------------------AGYDDFNCNVWDALKADRAGVLAGHDNRVSCL 318
Query: 281 QY--DERVIISGSSDSTVRVWD 300
D + +GS DS +++W+
Sbjct: 319 GVTDDGMAVATGSWDSFLKIWN 340
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 75.1 bits (183), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 106/223 (47%), Gaps = 10/223 (4%)
Query: 254 NTIKVWDRVSLQCIKVLTGHTGSVLCLQY--DERVIISGSSDSTVRVWDVNTGEMVNTLI 311
N I R+ ++ + L GH + + + D R+++S S D + +WD T V+ +
Sbjct: 35 NNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIP 94
Query: 312 HHCEAVLHLRFS-NGMMVTCSK-DRSIAVWDMVS-PNEITLRRVLVGHRAAVNVVDF-DE 367
V+ ++ +G V C D +++++ + + + R L GH ++ F D+
Sbjct: 95 LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD 154
Query: 368 KYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIE 425
IV++SGD T +W+ + + T GH + L RL VSG+ D + +LWD+
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 214
Query: 426 CGACLRVLEGHEELVRCIRF--DAKRIVSGAYDGKIKVWNLVA 466
G C + GHE + I F + +G+ D ++++L A
Sbjct: 215 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA 257
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 100/206 (48%), Gaps = 16/206 (7%)
Query: 270 LTGHTGSVLCLQY-DERVIISGSSDSTVRVWDVNTGEMVNTLIHHCEAVLHLRFS--NGM 326
L GHTG + C ++ D+ I++ S D+T +WD+ TG+ T H V+ L + +
Sbjct: 139 LAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRL 198
Query: 327 MVTCSKDRSIAVWDMVSPNEITLRRVLVGHRAAVNVVDF--DEKYIVSASGDRTIKVWNT 384
V+ + D S +WD+ E R+ GH + +N + F + + S D T ++++
Sbjct: 199 FVSGACDASAKLWDV---REGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL 255
Query: 385 SSCEFVRTLNGHKR---GIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEEL 439
+ + + T + H GI + + RL+++G D +WD VL GH+
Sbjct: 256 RADQELMTYS-HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNR 314
Query: 440 VRCIRF--DAKRIVSGAYDGKIKVWN 463
V C+ D + +G++D +K+WN
Sbjct: 315 VSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 93/196 (47%), Gaps = 15/196 (7%)
Query: 239 CLQYDDHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVLCLQY--DERVIISGSSDSTV 296
C DD++IV+ D T +WD + Q TGHTG V+ L D R+ +SG+ D++
Sbjct: 149 CRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASA 208
Query: 297 RVWDVNTGEMVNTLIHHCEAVLHL-RFSNG-MMVTCSKDRSIAVWDMVSPNEI---TLRR 351
++WDV G T H + + F NG T S D + ++D+ + E+ +
Sbjct: 209 KLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDN 268
Query: 352 VLVGHRAAVNVVDFDE--KYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYRD-- 407
++ G + V F + + +++ D VW+ + L GH ++CL D
Sbjct: 269 IICG----ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDG 324
Query: 408 RLVVSGSSDNTIRLWD 423
V +GS D+ +++W+
Sbjct: 325 MAVATGSWDSFLKIWN 340
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 52/237 (21%), Positives = 89/237 (37%), Gaps = 25/237 (10%)
Query: 75 DQIDFVENLLSRMCHYQHGHINTYLKPMLQRDFISLLPNFDEKYIVSASGDRTIKVWNTS 134
D I + NL +R G++ + ++S D+ IV++SGD T +W+
Sbjct: 118 DNICSIYNLKTR-----EGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIE 172
Query: 135 SCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRYRDE-----FQIVSSSHDDTILI 187
+ + T GH + L RL VSG+ D + + D Q + D I
Sbjct: 173 TGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAI 232
Query: 188 WDFLNYSETPIQXXXXXXXXXXXXXIENNWRMGKFLLQRINCRSENSKGVYCLQYDDHK- 246
F N + + + + + I C G+ + +
Sbjct: 233 CFFPNGNAFATG---SDDATCRLFDLRADQELMTYSHDNIIC------GITSVSFSKSGR 283
Query: 247 -IVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVLCLQY--DERVIISGSSDSTVRVWD 300
+++G D VWD + VL GH V CL D + +GS DS +++W+
Sbjct: 284 LLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/245 (27%), Positives = 105/245 (42%), Gaps = 29/245 (11%)
Query: 247 IVSGLRDNTIKVW-----DRVSLQCIKVLTGHTGSVL--CLQYDERVIISGSSDSTVRVW 299
++S RD T+ W D+ ++ GH+ V L D +S S D T+R+W
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 92
Query: 300 DVNTGEMVNTLIHHCEAVLHLRFSN--GMMVTCSKDRSIAVWDMVSPNEITLRRVLVGHR 357
DV TGE + H V+ + M+++ S+D++I VW + T L+GH
Sbjct: 93 DVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLAT----LLGHN 148
Query: 358 AAVNVV--------DFDEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYR--D 407
V+ V D D I+SA D+ +K WN + + GH I L
Sbjct: 149 DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDG 208
Query: 408 RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDAKRI-VSGAYDGKIKVWNLVA 466
L+ S D I LW++ + L +E V + F R ++ A IKV+
Sbjct: 209 TLIASAGKDGEIMLWNLAAKKAMYTLSAQDE-VFSLAFSPNRYWLAAATATGIKVF---- 263
Query: 467 ALDPR 471
+LDP+
Sbjct: 264 SLDPQ 268
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 96/219 (43%), Gaps = 26/219 (11%)
Query: 270 LTGHTGSVLCLQYDE---RVIISGSSDSTVRVW-----DVNTGEMVNTLIHHCEAVLH-- 319
L GH G V L +++S S D T+ W D G V + H V
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 320 LRFSNGMMVTCSKDRSIAVWDMVSPNEITLRRVLVGHRAAVNVVDFDEK--YIVSASGDR 377
L ++ S D+++ +WD+ + T +R VGH++ V VD D+K I+S S D+
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGE--TYQR-FVGHKSDVMSVDIDKKASMIISGSRDK 129
Query: 378 TIKVWNTSSCEFVRTLNGHKRGIACLQYRDR--------LVVSGSSDNTIRLWDIECGAC 429
TIKVW T + + TL GH ++ ++ ++S +D ++ W++
Sbjct: 130 TIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI 188
Query: 430 LRVLEGHEELVRCIRF--DAKRIVSGAYDGKIKVWNLVA 466
GH + + D I S DG+I +WNL A
Sbjct: 189 EADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA 227
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 115 DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIAC--LQYRDRLVVSGSSDNTIR 169
D Y +SAS D+T+++W+ ++ E + GHK + + + +++SGS D TI+
Sbjct: 76 DGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 15/76 (19%)
Query: 115 DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRYRDEF 174
D I+SA D+ +K WN + + GH I L + S D T+
Sbjct: 165 DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTL--------TASPDGTL------ 210
Query: 175 QIVSSSHDDTILIWDF 190
I S+ D I++W+
Sbjct: 211 -IASAGKDGEIMLWNL 225
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 10/87 (11%)
Query: 104 QRDFISLLPNFDEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYRDRLVVSGS 163
+ D +S+ + I+S S D+TIKVW T + + TL GH ++ + R+V +
Sbjct: 107 KSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQV----RVVPNEK 161
Query: 164 SDNTIRYRDEFQIVSSSHDDTILIWDF 190
+D+ D I+S+ +D + W+
Sbjct: 162 ADD-----DSVTIISAGNDKMVKAWNL 183
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/245 (27%), Positives = 105/245 (42%), Gaps = 29/245 (11%)
Query: 247 IVSGLRDNTIKVW-----DRVSLQCIKVLTGHTGSVL--CLQYDERVIISGSSDSTVRVW 299
++S RD T+ W D+ ++ GH+ V L D +S S D T+R+W
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 92
Query: 300 DVNTGEMVNTLIHHCEAVLHLRFSN--GMMVTCSKDRSIAVWDMVSPNEITLRRVLVGHR 357
DV TGE + H V+ + M+++ S+D++I VW + T L+GH
Sbjct: 93 DVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLAT----LLGHN 148
Query: 358 AAVNVV--------DFDEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYR--D 407
V+ V D D I+SA D+ +K WN + + GH I L
Sbjct: 149 DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDG 208
Query: 408 RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDAKRI-VSGAYDGKIKVWNLVA 466
L+ S D I LW++ + L +E V + F R ++ A IKV+
Sbjct: 209 TLIASAGKDGEIMLWNLAAKKAMYTLSAQDE-VFSLAFSPNRYWLAAATATGIKVF---- 263
Query: 467 ALDPR 471
+LDP+
Sbjct: 264 SLDPQ 268
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/252 (21%), Positives = 112/252 (44%), Gaps = 28/252 (11%)
Query: 239 CLQYDDHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVLCLQYDER--VIISGSSDSTV 296
L D +S D T+++WD + + + GH V+ + D++ +IISGS D T+
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 297 RVWDVNTGEMVNTLIHHCEAVLHLRF--------SNGMMVTCSKDRSIAVWDMVSPNEIT 348
+VW + G+ + TL+ H + V +R + +++ D+ + W++ N+
Sbjct: 132 KVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL---NQFQ 187
Query: 349 LRRVLVGHRAAVNVVDF--DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYR 406
+ +GH + +N + D I SA D I +WN ++ + + TL+ +
Sbjct: 188 IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSP 247
Query: 407 DRLVVSGSSDNTIRLWDI-----------ECGACLRVLEGHEELVRCIRFDAKRIVSGAY 455
+R ++ ++ I+++ + E + E H + D + + +G
Sbjct: 248 NRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPH-AVSLAWSADGQTLFAGYT 306
Query: 456 DGKIKVWNLVAA 467
D I+VW ++ A
Sbjct: 307 DNVIRVWQVMTA 318
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 115 DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIAC--LQYRDRLVVSGSSDNTIR 169
D Y +SAS D+T+++W+ ++ E + GHK + + + +++SGS D TI+
Sbjct: 76 DGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 39/190 (20%), Positives = 62/190 (32%), Gaps = 36/190 (18%)
Query: 115 DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRYRDEF 174
D I+SA D+ +K WN + + GH I L + S D T+
Sbjct: 165 DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTL--------TASPDGTL------ 210
Query: 175 QIVSSSHDDTILIWDFLNYSETPIQXXXXXXXXXXXXXIENNWRMGKFLLQRINCRSENS 234
I S+ D I++W+ ++ F R + +
Sbjct: 211 -IASAGKDGEIMLWNL------------AAKKAMYTLSAQDEVFSLAFSPNRYWLAAATA 257
Query: 235 KGVYCLQYDDHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVLCLQYDERVIISGSSDS 294
G+ D +V LR K H S L D + + +G +D+
Sbjct: 258 TGIKVFSLDPQYLVDDLRPEFAGY--------SKAAEPHAVS-LAWSADGQTLFAGYTDN 308
Query: 295 TVRVWDVNTG 304
+RVW V T
Sbjct: 309 VIRVWQVMTA 318
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 10/87 (11%)
Query: 104 QRDFISLLPNFDEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYRDRLVVSGS 163
+ D +S+ + I+S S D+TIKVW T + + TL GH ++ + R+V +
Sbjct: 107 KSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQV----RVVPNEK 161
Query: 164 SDNTIRYRDEFQIVSSSHDDTILIWDF 190
+D+ D I+S+ +D + W+
Sbjct: 162 ADD-----DSVTIISAGNDKMVKAWNL 183
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/245 (27%), Positives = 105/245 (42%), Gaps = 29/245 (11%)
Query: 247 IVSGLRDNTIKVW-----DRVSLQCIKVLTGHTGSVL--CLQYDERVIISGSSDSTVRVW 299
++S RD T+ W D+ ++ GH+ V L D +S S D T+R+W
Sbjct: 27 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 86
Query: 300 DVNTGEMVNTLIHHCEAVLHLRFSN--GMMVTCSKDRSIAVWDMVSPNEITLRRVLVGHR 357
DV TGE + H V+ + M+++ S+D++I VW + T L+GH
Sbjct: 87 DVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLAT----LLGHN 142
Query: 358 AAVNVV--------DFDEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYR--D 407
V+ V D D I+SA D+ +K WN + + GH I L
Sbjct: 143 DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDG 202
Query: 408 RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDAKRI-VSGAYDGKIKVWNLVA 466
L+ S D I LW++ + L +E V + F R ++ A IKV+
Sbjct: 203 TLIASAGKDGEIMLWNLAAKKAMYTLSAQDE-VFSLAFSPNRYWLAAATATGIKVF---- 257
Query: 467 ALDPR 471
+LDP+
Sbjct: 258 SLDPQ 262
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/252 (21%), Positives = 112/252 (44%), Gaps = 28/252 (11%)
Query: 239 CLQYDDHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVLCLQYDER--VIISGSSDSTV 296
L D +S D T+++WD + + + GH V+ + D++ +IISGS D T+
Sbjct: 66 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 125
Query: 297 RVWDVNTGEMVNTLIHHCEAVLHLRF--------SNGMMVTCSKDRSIAVWDMVSPNEIT 348
+VW + G+ + TL+ H + V +R + +++ D+ + W++ N+
Sbjct: 126 KVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL---NQFQ 181
Query: 349 LRRVLVGHRAAVNVVDF--DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYR 406
+ +GH + +N + D I SA D I +WN ++ + + TL+ +
Sbjct: 182 IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSP 241
Query: 407 DRLVVSGSSDNTIRLWDI-----------ECGACLRVLEGHEELVRCIRFDAKRIVSGAY 455
+R ++ ++ I+++ + E + E H + D + + +G
Sbjct: 242 NRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPH-AVSLAWSADGQTLFAGYT 300
Query: 456 DGKIKVWNLVAA 467
D I+VW ++ A
Sbjct: 301 DNVIRVWQVMTA 312
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 115 DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIAC--LQYRDRLVVSGSSDNTIR 169
D Y +SAS D+T+++W+ ++ E + GHK + + + +++SGS D TI+
Sbjct: 70 DGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 126
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 39/190 (20%), Positives = 62/190 (32%), Gaps = 36/190 (18%)
Query: 115 DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRYRDEF 174
D I+SA D+ +K WN + + GH I L + S D T+
Sbjct: 159 DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTL--------TASPDGTL------ 204
Query: 175 QIVSSSHDDTILIWDFLNYSETPIQXXXXXXXXXXXXXIENNWRMGKFLLQRINCRSENS 234
I S+ D I++W+ ++ F R + +
Sbjct: 205 -IASAGKDGEIMLWNL------------AAKKAMYTLSAQDEVFSLAFSPNRYWLAAATA 251
Query: 235 KGVYCLQYDDHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVLCLQYDERVIISGSSDS 294
G+ D +V LR K H S L D + + +G +D+
Sbjct: 252 TGIKVFSLDPQYLVDDLRPEFAGY--------SKAAEPHAVS-LAWSADGQTLFAGYTDN 302
Query: 295 TVRVWDVNTG 304
+RVW V T
Sbjct: 303 VIRVWQVMTA 312
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 10/87 (11%)
Query: 104 QRDFISLLPNFDEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYRDRLVVSGS 163
+ D +S+ + I+S S D+TIKVW T + + TL GH ++ + R+V +
Sbjct: 101 KSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQV----RVVPNEK 155
Query: 164 SDNTIRYRDEFQIVSSSHDDTILIWDF 190
+D+ D I+S+ +D + W+
Sbjct: 156 ADD-----DSVTIISAGNDKMVKAWNL 177
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/245 (27%), Positives = 105/245 (42%), Gaps = 29/245 (11%)
Query: 247 IVSGLRDNTIKVW-----DRVSLQCIKVLTGHTGSVL--CLQYDERVIISGSSDSTVRVW 299
++S RD T+ W D+ ++ GH+ V L D +S S D T+R+W
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 92
Query: 300 DVNTGEMVNTLIHHCEAVLHLRFSN--GMMVTCSKDRSIAVWDMVSPNEITLRRVLVGHR 357
DV TGE + H V+ + M+++ S+D++I VW + T L+GH
Sbjct: 93 DVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLAT----LLGHN 148
Query: 358 AAVNVV--------DFDEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYR--D 407
V+ V D D I+SA D+ +K WN + + GH I L
Sbjct: 149 DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDG 208
Query: 408 RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDAKRI-VSGAYDGKIKVWNLVA 466
L+ S D I LW++ + L +E V + F R ++ A IKV+
Sbjct: 209 TLIASAGKDGEIMLWNLAAKKAMYTLSAQDE-VFSLAFSPNRYWLAAATATGIKVF---- 263
Query: 467 ALDPR 471
+LDP+
Sbjct: 264 SLDPQ 268
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/252 (21%), Positives = 112/252 (44%), Gaps = 28/252 (11%)
Query: 239 CLQYDDHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVLCLQYDER--VIISGSSDSTV 296
L D +S D T+++WD + + + GH V+ + D++ +IISGS D T+
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 297 RVWDVNTGEMVNTLIHHCEAVLHLRF--------SNGMMVTCSKDRSIAVWDMVSPNEIT 348
+VW + G+ + TL+ H + V +R + +++ D+ + W++ N+
Sbjct: 132 KVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL---NQFQ 187
Query: 349 LRRVLVGHRAAVNVVDF--DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYR 406
+ +GH + +N + D I SA D I +WN ++ + + TL+ +
Sbjct: 188 IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSP 247
Query: 407 DRLVVSGSSDNTIRLWDI-----------ECGACLRVLEGHEELVRCIRFDAKRIVSGAY 455
+R ++ ++ I+++ + E + E H + D + + +G
Sbjct: 248 NRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPH-AVSLAWSADGQTLFAGYT 306
Query: 456 DGKIKVWNLVAA 467
D I+VW ++ A
Sbjct: 307 DNVIRVWQVMTA 318
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 115 DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIAC--LQYRDRLVVSGSSDNTIR 169
D Y +SAS D+T+++W+ ++ E + GHK + + + +++SGS D TI+
Sbjct: 76 DGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 15/76 (19%)
Query: 115 DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRYRDEF 174
D I+SA D+ +K WN + + GH I L + S D T+
Sbjct: 165 DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTL--------TASPDGTL------ 210
Query: 175 QIVSSSHDDTILIWDF 190
I S+ D I++W+
Sbjct: 211 -IASAGKDGEIMLWNL 225
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 10/87 (11%)
Query: 104 QRDFISLLPNFDEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYRDRLVVSGS 163
+ D +S+ + I+S S D+TIKVW T + + TL GH ++ + R+V +
Sbjct: 107 KSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQV----RVVPNEK 161
Query: 164 SDNTIRYRDEFQIVSSSHDDTILIWDF 190
+D+ D I+S+ +D + W+
Sbjct: 162 ADD-----DSVTIISAGNDKMVKAWNL 183
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/245 (27%), Positives = 105/245 (42%), Gaps = 29/245 (11%)
Query: 247 IVSGLRDNTIKVW-----DRVSLQCIKVLTGHTGSVL--CLQYDERVIISGSSDSTVRVW 299
++S RD T+ W D+ ++ GH+ V L D +S S D T+R+W
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 92
Query: 300 DVNTGEMVNTLIHHCEAVLHLRFSN--GMMVTCSKDRSIAVWDMVSPNEITLRRVLVGHR 357
DV TGE + H V+ + M+++ S+D++I VW + T L+GH
Sbjct: 93 DVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLAT----LLGHN 148
Query: 358 AAVNVV--------DFDEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYR--D 407
V+ V D D I+SA D+ +K WN + + GH I L
Sbjct: 149 DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDG 208
Query: 408 RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDAKRI-VSGAYDGKIKVWNLVA 466
L+ S D I LW++ + L +E V + F R ++ A IKV+
Sbjct: 209 TLIASAGKDGEIMLWNLAAKKAMYTLSAQDE-VFSLAFSPNRYWLAAATATGIKVF---- 263
Query: 467 ALDPR 471
+LDP+
Sbjct: 264 SLDPQ 268
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 115 DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIAC--LQYRDRLVVSGSSDNTIR 169
D Y +SAS D+T+++W+ ++ E + GHK + + + +++SGS D TI+
Sbjct: 76 DGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 15/76 (19%)
Query: 115 DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRYRDEF 174
D I+SA D+ +K WN + + GH I L + S D T+
Sbjct: 165 DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTL--------TASPDGTL------ 210
Query: 175 QIVSSSHDDTILIWDF 190
I S+ D I++W+
Sbjct: 211 -IASAGKDGEIMLWNL 225
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 48/231 (20%), Positives = 89/231 (38%), Gaps = 51/231 (22%)
Query: 104 QRDFISLLPNFDEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYRDRLVVSGS 163
+ D +S+ + I+S S D+TIKVW T + + TL GH ++ + R+V +
Sbjct: 107 KSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQV----RVVPNEK 161
Query: 164 SDNTIRYRDEFQIVSSSHDDTILIW---------DFLNYSETPIQXXXXXXXXXXXXXIE 214
+D+ D I+S+ +D + W DF+ ++ I
Sbjct: 162 ADD-----DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSN----INTLTASPDGTLIA 212
Query: 215 NNWRMGKFLLQRINCRSENSKGVYCLQYDDHKIVSGLRDNTIKVW-DRVSLQCIKVLT-- 271
+ + G+ +L + + K +Y L D N + W + IKV +
Sbjct: 213 SAGKDGEIMLWNLAAK----KAMYTLSAQDEVFSLAFSPN--RYWLAAATATGIKVFSLD 266
Query: 272 -------------GHTGSV------LCLQYDERVIISGSSDSTVRVWDVNT 303
G++ + L D + + +G +D+ +RVW V T
Sbjct: 267 PQYLVDDLRPEFAGYSAAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 83/363 (22%), Positives = 137/363 (37%), Gaps = 107/363 (29%)
Query: 140 RTLNGHKRGIACLQYRDRLVVSGSSDNTIRYRDEFQIVSSSHDDTILIWD-FLNYSETPI 198
RTL GH + C+ + +D+ +IVSSS D +++WD F E +
Sbjct: 58 RTLKGHGNKVLCMDW---------------CKDKRRIVSSSQDGKVIVWDSFTTNKEHAV 102
Query: 199 QXXXXXXXXXXXXXIENNWRMGKFLLQR---INCRS-ENSKGVYCLQYD----------- 243
+ W M I C +N VY L +D
Sbjct: 103 -------------TMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKS 149
Query: 244 ----------------DHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVLCLQY----D 283
D +I++ D T +WD S Q ++ GH VLCL
Sbjct: 150 VAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSET 209
Query: 284 ERVIISGSSDSTVRVWDVNTGEMVNTLIHHCEAVLHLRF--SNGMMVTCSKDRSIAVWDM 341
+SG D VWD+ +G+ V H V +R+ S + S D + ++D+
Sbjct: 210 GNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDL 269
Query: 342 VSPNEITLRRVLVGHRAAVNVVDFDEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIA 401
+ E+ + + ++ I+ + SS +F +L+G
Sbjct: 270 RADREVAI---------------YSKESII----------FGASSVDF--SLSG------ 296
Query: 402 CLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DAKRIVSGAYDGKI 459
RL+ +G +D TI +WD+ G+ + +L GHE V +R D SG++D +
Sbjct: 297 ------RLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTL 350
Query: 460 KVW 462
+VW
Sbjct: 351 RVW 353
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 80/205 (39%), Gaps = 43/205 (20%)
Query: 268 KVLTGHTGSVLCLQY--DERVIISGSSDSTVRVWDVNTGEMVNTLIHHCEAVLHLRFS-N 324
+ L GH VLC+ + D+R I+S S D V VWD T + + C V+ ++ +
Sbjct: 58 RTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPS 117
Query: 325 GMMVTCSKDRSIAVWDMVSPNEITLRRVLVGHRAAVNVVDFDEKYIVSASGDRTIKVWN- 383
G + C + ++ +V + FD+ ++A N
Sbjct: 118 GCAIACGG---------------------LDNKCSVYPLTFDKNENMAAKKKSVAMHTNY 156
Query: 384 TSSCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCI 443
S+C F + D +++ S D T LWD+E G L+ GH V C+
Sbjct: 157 LSACSFTNS--------------DMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCL 202
Query: 444 RF----DAKRIVSGAYDGKIKVWNL 464
VSG D K VW++
Sbjct: 203 DLAPSETGNTFVSGGCDKKAMVWDM 227
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 86/227 (37%), Gaps = 48/227 (21%)
Query: 119 IVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRYRDEFQIVS 178
I++ASGD T +W+ S + +++ +GH + CL + + NT VS
Sbjct: 169 ILTASGDGTCALWDVESGQLLQSFHGHGADVLCLD-----LAPSETGNT--------FVS 215
Query: 179 SSHDDTILIWDFLNYSETPIQXXXXXXXXXXXXXIENNWRMGKFLLQRINCRSENSKGVY 238
D ++WD R G+ +Q + V
Sbjct: 216 GGCDKKAMVWDM---------------------------RSGQ-CVQAFETHESDVNSVR 247
Query: 239 CLQYDDHKIVSGLRDNTIKVWDRVSLQCIKVLTGHT----GSVLCLQYDERVIISGSSDS 294
D SG D T +++D + + + + + + S + R++ +G +D
Sbjct: 248 YYPSGD-AFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDY 306
Query: 295 TVRVWDVNTGEMVNTLIHHCEAVLHLRFSNGMMVTCSK--DRSIAVW 339
T+ VWDV G V+ L H V LR S CS D ++ VW
Sbjct: 307 TINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 98/200 (49%), Gaps = 23/200 (11%)
Query: 243 DDHKIVSGLRDNTIKVWDRVSLQCIKVLT--GHTGSVLCLQY----DERVIISGSSDSTV 296
D+ +IVSG RDN ++VW+ V +C+ L+ HT V C+++ D VI+SG D+ V
Sbjct: 120 DNRQIVSGGRDNALRVWN-VKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLV 178
Query: 297 RVWDVNTGEMVNTLIHHCEAVLHLRFS--NGMMVTCSKDRSIAVWDMVSPNEITLRRVLV 354
+VWD+ TG +V L H V + S + + KD +WD+ L +
Sbjct: 179 KVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGE--ALSEMAA 236
Query: 355 GHRAAVNVVDFD-EKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIA-----CLQYR-- 406
G A +N + F +Y + A+ ++ I++++ + + + L +G C+
Sbjct: 237 G--APINQICFSPNRYWMCAATEKGIRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWS 294
Query: 407 --DRLVVSGSSDNTIRLWDI 424
+ SG +DN IR+W +
Sbjct: 295 ADGSTLYSGYTDNVIRVWGV 314
Score = 68.2 bits (165), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 101/240 (42%), Gaps = 33/240 (13%)
Query: 270 LTGHTG---SVLCLQYDERV--IISGSSDSTVRVWDVNT---------GEMVNTLIHHCE 315
LTGH G S+ C Q E ++S S D T+ W N G L H
Sbjct: 9 LTGHRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSA 68
Query: 316 AVLHLRFSNG--MMVTCSKDRSIAVWDMVSPNEITLRRVLVGHRAAVNVVDF--DEKYIV 371
V + SN V+ S D S+ +W++ + + +GH V V F D + IV
Sbjct: 69 FVSDVALSNNGNFAVSASWDHSLRLWNLQNGQ---CQYKFLGHTKDVLSVAFSPDNRQIV 125
Query: 372 SASGDRTIKVWNT-SSCEFVRTLNGHKRGIACLQYRDRL----VVSGSSDNTIRLWDIEC 426
S D ++VWN C + H ++C+++ L +VSG DN +++WD+
Sbjct: 126 SGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLAT 185
Query: 427 GACLRVLEGHEELVRCIRF--DAKRIVSGAYDGKIKVWNL-----VAALDPRAPTTTLCL 479
G + L+GH V + D S DG ++W+L ++ + AP +C
Sbjct: 186 GRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGAPINQICF 245
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/245 (26%), Positives = 115/245 (46%), Gaps = 25/245 (10%)
Query: 240 LQYDDHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVLCLQY--DERVIISGSSDSTVR 297
L + + VS D+++++W+ + QC GHT VL + + D R I+SG D+ +R
Sbjct: 75 LSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALR 134
Query: 298 VWDVNTGEMVNTLIH--HCEAVLHLRFSNGM----MVTCSKDRSIAVWDMVSPNEITLRR 351
VW+V GE ++TL H + V +RFS + +V+ D + VWD+ + +T
Sbjct: 135 VWNVK-GECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVT--- 190
Query: 352 VLVGHRAAVN--VVDFDEKYIVSASGDRTIKVWNTSSCEFVRTL-NGHKRGIACLQYRDR 408
L GH V V D S+ D ++W+ + E + + G C +R
Sbjct: 191 DLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGAPINQICFS-PNR 249
Query: 409 LVVSGSSDNTIRLWDIECGACLRVL----EGHEELV-RCIRF----DAKRIVSGAYDGKI 459
+ +++ IR++D+E + L +G +++V C+ D + SG D I
Sbjct: 250 YWMCAATEKGIRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSADGSTLYSGYTDNVI 309
Query: 460 KVWNL 464
+VW +
Sbjct: 310 RVWGV 314
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 22/136 (16%)
Query: 47 PNRKKEPAPQFASEKEMC----FKYFDKWSEQDQIDFVENLLSRMCHYQH-GHINTYLKP 101
P+R+ E F S+ + F W D + NL + C Y+ GH
Sbjct: 59 PDRRLEGHSAFVSDVALSNNGNFAVSASW---DHSLRLWNLQNGQCQYKFLGHT------ 109
Query: 102 MLQRDFISLLPNFDEKYIVSASGDRTIKVWNT-SSCEFVRTLNGHKRGIACLQYRDRL-- 158
+D +S+ + D + IVS D ++VWN C + H ++C+++ L
Sbjct: 110 ---KDVLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDA 166
Query: 159 --VVSGSSDNTIRYRD 172
+VSG DN ++ D
Sbjct: 167 PVIVSGGWDNLVKVWD 182
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 25/58 (43%)
Query: 108 ISLLPNFDEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYRDRLVVSGSSD 165
+ P+ D IVS D +KVW+ ++ V L GH + + + SSD
Sbjct: 158 VRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSD 215
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/252 (21%), Positives = 108/252 (42%), Gaps = 28/252 (11%)
Query: 239 CLQYDDHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVLCLQYDERV--IISGSSDSTV 296
L D +S D T+++WD + + + GH V + D++ IISGS D T+
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTI 131
Query: 297 RVWDVNTGEMVNTLIHHCEAVLHLRF--------SNGMMVTCSKDRSIAVWDMVSPNEIT 348
+VW + G+ + TL+ H + V +R + +++ D+ + W++ N+
Sbjct: 132 KVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNL---NQFQ 187
Query: 349 LRRVLVGHRAAVNVVDF--DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYR 406
+ +GH + +N + D I SA D I +WN ++ + TL+ +
Sbjct: 188 IEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDEVFSLAFSP 247
Query: 407 DRLVVSGSSDNTIRLWDI-----------ECGACLRVLEGHEELVRCIRFDAKRIVSGAY 455
+R ++ ++ I+++ + E + E H + D + + +G
Sbjct: 248 NRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPH-AVSLAWSADGQTLFAGYT 306
Query: 456 DGKIKVWNLVAA 467
D I+VW + A
Sbjct: 307 DNVIRVWQVXTA 318
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 102/245 (41%), Gaps = 29/245 (11%)
Query: 247 IVSGLRDNTIKVW-----DRVSLQCIKVLTGHTGSVL--CLQYDERVIISGSSDSTVRVW 299
++S RD T+ W D+ ++ GH+ V L D +S S D T+R+W
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLW 92
Query: 300 DVNTGEMVNTLIHHCEAVLHLRFSN--GMMVTCSKDRSIAVWDMVSPNEITLRRVLVGHR 357
DV TGE + H V + +++ S+D++I VW + T L+GH
Sbjct: 93 DVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIKGQCLAT----LLGHN 148
Query: 358 AAVNVV--------DFDEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYR--D 407
V+ V D D I+SA D+ +K WN + + GH I L
Sbjct: 149 DWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDG 208
Query: 408 RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDAKRI-VSGAYDGKIKVWNLVA 466
L+ S D I LW++ L +E V + F R ++ A IKV+
Sbjct: 209 TLIASAGKDGEIXLWNLAAKKAXYTLSAQDE-VFSLAFSPNRYWLAAATATGIKVF---- 263
Query: 467 ALDPR 471
+LDP+
Sbjct: 264 SLDPQ 268
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 96/219 (43%), Gaps = 26/219 (11%)
Query: 270 LTGHTGSVLCLQYDE---RVIISGSSDSTVRVW-----DVNTGEMVNTLIHHCEAVLH-- 319
L GH G V L +++S S D T+ W D G V + H V
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 320 LRFSNGMMVTCSKDRSIAVWDMVSPNEITLRRVLVGHRAAVNVVDFDEK--YIVSASGDR 377
L ++ S D+++ +WD+ + T +R VGH++ V VD D+K I+S S D+
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGE--TYQR-FVGHKSDVXSVDIDKKASXIISGSRDK 129
Query: 378 TIKVWNTSSCEFVRTLNGHKRGIACLQYRDR--------LVVSGSSDNTIRLWDIECGAC 429
TIKVW T + + TL GH ++ ++ ++S +D ++ W++
Sbjct: 130 TIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQI 188
Query: 430 LRVLEGHEELVRCIRF--DAKRIVSGAYDGKIKVWNLVA 466
GH + + D I S DG+I +WNL A
Sbjct: 189 EADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAA 227
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 61/135 (45%), Gaps = 13/135 (9%)
Query: 343 SPNEI-TLRRVLVGHRAAVNVVDFDE---KYIVSASGDRTIKVWNTSSCEF-----VRTL 393
+ NE+ LR L GH V + ++SAS D+T+ W + + VR+
Sbjct: 2 ASNEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSF 61
Query: 394 NGHKRGIA--CLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--AKR 449
GH + L +S S D T+RLWD+ G + GH+ V + D A
Sbjct: 62 KGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASX 121
Query: 450 IVSGAYDGKIKVWNL 464
I+SG+ D IKVW +
Sbjct: 122 IISGSRDKTIKVWTI 136
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 115 DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIAC--LQYRDRLVVSGSSDNTIR 169
D Y +SAS D+T+++W+ ++ E + GHK + + + ++SGS D TI+
Sbjct: 76 DGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIK 132
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 40/190 (21%), Positives = 62/190 (32%), Gaps = 36/190 (18%)
Query: 115 DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRYRDEF 174
D I+SA D+ +K WN + + GH I L + S D T+
Sbjct: 165 DSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTL--------TASPDGTL------ 210
Query: 175 QIVSSSHDDTILIWDFLNYSETPIQXXXXXXXXXXXXXIENNWRMGKFLLQRINCRSENS 234
I S+ D I +W+ ++ F R + +
Sbjct: 211 -IASAGKDGEIXLWNL------------AAKKAXYTLSAQDEVFSLAFSPNRYWLAAATA 257
Query: 235 KGVYCLQYDDHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVLCLQYDERVIISGSSDS 294
G+ D +V LR K H S L D + + +G +D+
Sbjct: 258 TGIKVFSLDPQYLVDDLRPEFAGY--------SKAAEPHAVS-LAWSADGQTLFAGYTDN 308
Query: 295 TVRVWDVNTG 304
+RVW V T
Sbjct: 309 VIRVWQVXTA 318
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 10/72 (13%)
Query: 119 IVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRYRDEFQIVS 178
I+S S D+TIKVW T + + TL GH ++ + R+V + +D+ D I+S
Sbjct: 122 IISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQV----RVVPNEKADD-----DSVTIIS 171
Query: 179 SSHDDTILIWDF 190
+ +D + W+
Sbjct: 172 AGNDKXVKAWNL 183
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/271 (23%), Positives = 123/271 (45%), Gaps = 37/271 (13%)
Query: 222 FLLQRINCRSENSKGVYCLQYDDHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVLCLQ 281
F L + ++ N +D + IV+G+ + +++W++ + VL H ++ ++
Sbjct: 98 FALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWNKTG-ALLNVLNFHRAPIVSVK 156
Query: 282 Y--DERVIISGSSDSTVRVWDVNTGEMVNTLIHHCEAVLHLRFSNGMMVTC---SKDRSI 336
+ D IIS ++ +W+V +G T++ H E L+ + G + S D S+
Sbjct: 157 WNKDGTHIISMDVENVTILWNVISG----TVMQHFE----LKETGGSSINAENHSGDGSL 208
Query: 337 AV---W----DMVSPN-----------EITLRRVLVGHRAAVNVVDFDE--KYIVSASGD 376
V W V P E T L+GH ++V++F++ K ++SAS D
Sbjct: 209 GVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDD 268
Query: 377 RTIKVWNTSSCEFVRTLNGHKRGIACLQY-RDRLVVSGSSDNTIRLWDIECGA--CLRVL 433
T+++W+ + GH + I + D V+S S D ++RLW ++ L ++
Sbjct: 269 GTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLALSIV 328
Query: 434 EGHEELVRCIRFDAKRIVSGAYDGKIKVWNL 464
+G I D ++ DG++ V++L
Sbjct: 329 DGVPIFAGRISQDGQKYAVAFMDGQVNVYDL 359
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 60/290 (20%), Positives = 115/290 (39%), Gaps = 36/290 (12%)
Query: 115 DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRYRDEF 174
D IV+ + +++WN + + LN H+ I +++ +D
Sbjct: 119 DGNSIVTGVENGELRLWNKTGA-LLNVLNFHRAPIVSVKWN---------------KDGT 162
Query: 175 QIVSSSHDDTILIWDFLNYSETPIQXXXXXXXXXXXXXIENNWRMGKFLLQRINCRSENS 234
I+S ++ ++W+ + S T +Q EN+ + S
Sbjct: 163 HIISMDVENVTILWNVI--SGTVMQHFELKETGGSSINAENH-------------SGDGS 207
Query: 235 KGVYCLQYDDHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVLCLQYDE--RVIISGSS 292
GV DD K V I V+ L GH G + L++++ ++++S S
Sbjct: 208 LGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASD 267
Query: 293 DSTVRVWDVNTGEMVNTLIHHCEAVLHLRF-SNGMMVTCSKDRSIAVWDMVSPNEITLRR 351
D T+R+W G N H ++++ + + +++CS D S+ +W + + L
Sbjct: 268 DGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLALSI 327
Query: 352 VLVGHRAAVNVVDFDEKYIVSASGDRTIKVWNTSSCEF-VRTLNGHKRGI 400
V A + +KY V A D + V++ R+L G++ GI
Sbjct: 328 VDGVPIFAGRISQDGQKYAV-AFMDGQVNVYDLKKLNSKSRSLYGNRDGI 376
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 108 ISLLP-NFDEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQY-RDRLVVSGSSD 165
IS+L N K ++SAS D T+++W+ + GH + I + D V+S S D
Sbjct: 250 ISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDKVISCSMD 309
Query: 166 NTIR 169
++R
Sbjct: 310 GSVR 313
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 111/266 (41%), Gaps = 40/266 (15%)
Query: 243 DDHKIVSGLRDNTIKVWDRVSLQ-------CIKVLTGHTGSV--LCLQYDERVIISGSSD 293
D ++SG RD T+ +W + K LTGH V L L + IS S D
Sbjct: 38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWD 97
Query: 294 STVRVWDVNTGEMVNTLIHHCEAVLHLRFS--NGMMVTCSKDRSIAVWDMVS-------- 343
T+R+WD+ TG + H V + FS N +++ +R I +W+++
Sbjct: 98 KTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAE 157
Query: 344 ----PNEITLRRVLVGHRAAVNVVDFDEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRG 399
+ ++ R ++A V F Y S D +KVWNT + + T H+
Sbjct: 158 KENHSDWVSCVRYSPIMKSANKVQPF-APYFASVGWDGRLKVWNT-NFQIRYTFKAHESN 215
Query: 400 IACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEEL-----VRCIRFDAK-RIV 451
+ L + + +G D + +WDI L + E + I F+ K + V
Sbjct: 216 VNHLSISPNGKYIATGGKDKKLLIWDI-----LNLTYPQREFDAGSTINQIAFNPKLQWV 270
Query: 452 SGAYDGKIKVWNLVAALDPRAPTTTL 477
+ D +K++NL+ +AP T+
Sbjct: 271 AVGTDQGVKIFNLMT--QSKAPVCTI 294
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 103/240 (42%), Gaps = 19/240 (7%)
Query: 247 IVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVLCLQYDERVIISGSSDSTVRVWDVNTGE- 305
+ G +++WD + ++ +T H+ V L ++ ++ SGS + DV E
Sbjct: 173 LAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEH 232
Query: 306 MVNTLIHHCEAVLHLRFS--NGMMVTCSKDRSIAVWDMVSPNE---ITLRRVLVGHRAAV 360
V TL H + V LR++ + + D + VW +P E + L + H+ AV
Sbjct: 233 HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPS-APGEGGWVPL-QTFTQHQGAV 290
Query: 361 NVV---DFDEKYIVSASG--DRTIKVWNTSSCEFVRTLNGHKRGIACL---QYRDRLVVS 412
V + + + G DR I++WN S + ++ H + + L Y++ +
Sbjct: 291 KAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGH 350
Query: 413 GSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DAKRIVSGAYDGKIKVWNLVAALDP 470
G + N + +W A + L+GH V + D + S A D +++W LDP
Sbjct: 351 GFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCF-ELDP 409
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/203 (21%), Positives = 97/203 (47%), Gaps = 19/203 (9%)
Query: 253 DNTIKVWDRVSLQCIKVLT----GHTGSVLCLQYDERVIISGSSDSTVRVWDVNTGEMVN 308
DN++ +W S +++L G S + + + G+S + V++WDV + +
Sbjct: 135 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 194
Query: 309 TLIHHCEAVLHLRFSNGMMVTCSKDRSIAVWDM-VSPNEITLRRVLVGHRAAVNVVDF-- 365
+ H V L +++ ++ + S+ I D+ V+ + + L GH V + +
Sbjct: 195 NMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVA---TLSGHSQEVCGLRWAP 251
Query: 366 DEKYIVSASGDRTIKVWNTSSCEF----VRTLNGHK---RGIACLQYRDRLVVSG--SSD 416
D +++ S D + VW ++ E ++T H+ + +A ++ ++ +G +SD
Sbjct: 252 DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSD 311
Query: 417 NTIRLWDIECGACLRVLEGHEEL 439
IR+W++ GACL ++ H ++
Sbjct: 312 RHIRIWNVCSGACLSAVDAHSQV 334
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 56/105 (53%), Gaps = 6/105 (5%)
Query: 360 VNVVDFDEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRG-----IACLQYRDRLVVSGS 414
+N+VD+ +++ + D ++ +W+ SS + ++ L + G +A ++ + L V G+
Sbjct: 119 LNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAV-GT 177
Query: 415 SDNTIRLWDIECGACLRVLEGHEELVRCIRFDAKRIVSGAYDGKI 459
S ++LWD++ LR + H V + +++ + SG+ G I
Sbjct: 178 SSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHI 222
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/154 (20%), Positives = 63/154 (40%), Gaps = 17/154 (11%)
Query: 243 DDHKIVSGLRDNTIKVWDRVSLQC----IKVLTGHTGSVLCL-----QYDERVIISGSSD 293
D + SG DN + VW + ++ T H G+V + Q + G+SD
Sbjct: 252 DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSD 311
Query: 294 STVRVWDVNTGEMVNTLIHH---CEAVLHLRFSNGMMVTCSKDRSIAVWDMVSPNEITLR 350
+R+W+V +G ++ + H C + + + + +W + ++
Sbjct: 312 RHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVA-- 369
Query: 351 RVLVGHRAAVNVVDF--DEKYIVSASGDRTIKVW 382
L GH + V + D + SA+ D T+++W
Sbjct: 370 -ELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 101/231 (43%), Gaps = 33/231 (14%)
Query: 267 IKVLTGHTGSVLCLQYDER---VIISGSSDSTVRVWDVNTGEMVNTLIHHCEAVLHLRFS 323
I++ H G V +Y + VI + + S V V+D C+ L LR
Sbjct: 121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGH 180
Query: 324 -------------NGMMVTCSKDRSIAVWDM-VSPNE---ITLRRVLVGHRAAVNVVDFD 366
NG +++ S D +I +WD+ +P E I + + GH A V V +
Sbjct: 181 QKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWH 240
Query: 367 ---EKYIVSASGDRTIKVWNT---SSCEFVRTLNGHKRGIACLQ---YRDRLVVSGSSDN 417
E S + D+ + +W+T ++ + T++ H + CL Y + ++ +GS+D
Sbjct: 241 LLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADK 300
Query: 418 TIRLWDI-ECGACLRVLEGHEELVRCIRFDAKR---IVSGAYDGKIKVWNL 464
T+ LWD+ L E H++ + +++ + S D ++ VW+L
Sbjct: 301 TVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 351
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 71/156 (45%), Gaps = 28/156 (17%)
Query: 253 DNTIKVWDRVSLQCIK---VLTGHTGSVLCLQ---YDERVIISGSSDSTVRVWDV-NTGE 305
D + +WD + K + HT V CL Y E ++ +GS+D TV +WD+ N
Sbjct: 253 DQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL 312
Query: 306 MVNTLIHHCEAVLHLRFS---NGMMVTCSKDRSIAVWDMVSPNE-----------ITLRR 351
+++ H + + +++S ++ + DR + VWD+ E L
Sbjct: 313 KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLF 372
Query: 352 VLVGHRAAVNVVDF----DEKYIV-SASGDRTIKVW 382
+ GH A ++ DF +E +I+ S S D ++VW
Sbjct: 373 IHGGHTAKIS--DFSWNPNEPWIICSVSEDNIMQVW 406
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 56/138 (40%), Gaps = 28/138 (20%)
Query: 226 RINCRSENSKGVYCLQYDDHKIVSGLRDNTIKVWDRVSLQC-IKVLTGHTGSVLCLQY-- 282
+NC S N Y + + +G D T+ +WD +L+ + H + +Q+
Sbjct: 279 EVNCLSFNP-------YSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP 331
Query: 283 -DERVIISGSSDSTVRVWDVNT-GEMVNT-----------LIHHCEAVLHLRFS---NGM 326
+E ++ S +D + VWD++ GE +T IH FS N
Sbjct: 332 HNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEP 391
Query: 327 MVTC--SKDRSIAVWDMV 342
+ C S+D + VW M
Sbjct: 392 WIICSVSEDNIMQVWQMA 409
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 103/240 (42%), Gaps = 19/240 (7%)
Query: 247 IVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVLCLQYDERVIISGSSDSTVRVWDVNTGE- 305
+ G +++WD + ++ +T H+ V L ++ ++ SGS + DV E
Sbjct: 162 LAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEH 221
Query: 306 MVNTLIHHCEAVLHLRFS--NGMMVTCSKDRSIAVWDMVSPNE---ITLRRVLVGHRAAV 360
V TL H + V LR++ + + D + VW +P E + L + H+ AV
Sbjct: 222 HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPS-APGEGGWVPL-QTFTQHQGAV 279
Query: 361 NVV---DFDEKYIVSASG--DRTIKVWNTSSCEFVRTLNGHKRGIACL---QYRDRLVVS 412
V + + + G DR I++WN S + ++ H + + L Y++ +
Sbjct: 280 KAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGH 339
Query: 413 GSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DAKRIVSGAYDGKIKVWNLVAALDP 470
G + N + +W A + L+GH V + D + S A D +++W LDP
Sbjct: 340 GFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCF-ELDP 398
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/203 (21%), Positives = 97/203 (47%), Gaps = 19/203 (9%)
Query: 253 DNTIKVWDRVSLQCIKVLT----GHTGSVLCLQYDERVIISGSSDSTVRVWDVNTGEMVN 308
DN++ +W S +++L G S + + + G+S + V++WDV + +
Sbjct: 124 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 183
Query: 309 TLIHHCEAVLHLRFSNGMMVTCSKDRSIAVWDM-VSPNEITLRRVLVGHRAAVNVVDF-- 365
+ H V L +++ ++ + S+ I D+ V+ + + L GH V + +
Sbjct: 184 NMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVA---TLSGHSQEVCGLRWAP 240
Query: 366 DEKYIVSASGDRTIKVWNTSSCEF----VRTLNGHK---RGIACLQYRDRLVVSG--SSD 416
D +++ S D + VW ++ E ++T H+ + +A ++ ++ +G +SD
Sbjct: 241 DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSD 300
Query: 417 NTIRLWDIECGACLRVLEGHEEL 439
IR+W++ GACL ++ H ++
Sbjct: 301 RHIRIWNVCSGACLSAVDAHSQV 323
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 56/105 (53%), Gaps = 6/105 (5%)
Query: 360 VNVVDFDEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRG-----IACLQYRDRLVVSGS 414
+N+VD+ +++ + D ++ +W+ SS + ++ L + G +A ++ + L V G+
Sbjct: 108 LNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAV-GT 166
Query: 415 SDNTIRLWDIECGACLRVLEGHEELVRCIRFDAKRIVSGAYDGKI 459
S ++LWD++ LR + H V + +++ + SG+ G I
Sbjct: 167 SSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHI 211
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/154 (20%), Positives = 63/154 (40%), Gaps = 17/154 (11%)
Query: 243 DDHKIVSGLRDNTIKVWDRVSLQC----IKVLTGHTGSVLCL-----QYDERVIISGSSD 293
D + SG DN + VW + ++ T H G+V + Q + G+SD
Sbjct: 241 DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSD 300
Query: 294 STVRVWDVNTGEMVNTLIHH---CEAVLHLRFSNGMMVTCSKDRSIAVWDMVSPNEITLR 350
+R+W+V +G ++ + H C + + + + +W + ++
Sbjct: 301 RHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVA-- 358
Query: 351 RVLVGHRAAVNVVDF--DEKYIVSASGDRTIKVW 382
L GH + V + D + SA+ D T+++W
Sbjct: 359 -ELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 101/231 (43%), Gaps = 33/231 (14%)
Query: 267 IKVLTGHTGSVLCLQYDER---VIISGSSDSTVRVWDVNTGEMVNTLIHHCEAVLHLRFS 323
I++ H G V +Y + VI + + S V V+D C+ L LR
Sbjct: 123 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGH 182
Query: 324 -------------NGMMVTCSKDRSIAVWDM-VSPNE---ITLRRVLVGHRAAVNVVDFD 366
NG +++ S D +I +WD+ +P E I + + GH A V V +
Sbjct: 183 QKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWH 242
Query: 367 ---EKYIVSASGDRTIKVWNT---SSCEFVRTLNGHKRGIACLQ---YRDRLVVSGSSDN 417
E S + D+ + +W+T ++ + T++ H + CL Y + ++ +GS+D
Sbjct: 243 LLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADK 302
Query: 418 TIRLWDI-ECGACLRVLEGHEELVRCIRFDAKR---IVSGAYDGKIKVWNL 464
T+ LWD+ L E H++ + +++ + S D ++ VW+L
Sbjct: 303 TVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 353
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 71/156 (45%), Gaps = 28/156 (17%)
Query: 253 DNTIKVWDRVSLQCIK---VLTGHTGSVLCLQ---YDERVIISGSSDSTVRVWDV-NTGE 305
D + +WD + K + HT V CL Y E ++ +GS+D TV +WD+ N
Sbjct: 255 DQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL 314
Query: 306 MVNTLIHHCEAVLHLRFS---NGMMVTCSKDRSIAVWDMVSPNE-----------ITLRR 351
+++ H + + +++S ++ + DR + VWD+ E L
Sbjct: 315 KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLF 374
Query: 352 VLVGHRAAVNVVDF----DEKYIV-SASGDRTIKVW 382
+ GH A ++ DF +E +I+ S S D ++VW
Sbjct: 375 IHGGHTAKIS--DFSWNPNEPWIICSVSEDNIMQVW 408
Score = 32.0 bits (71), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 56/138 (40%), Gaps = 28/138 (20%)
Query: 226 RINCRSENSKGVYCLQYDDHKIVSGLRDNTIKVWDRVSLQC-IKVLTGHTGSVLCLQY-- 282
+NC S N Y + + +G D T+ +WD +L+ + H + +Q+
Sbjct: 281 EVNCLSFNP-------YSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP 333
Query: 283 -DERVIISGSSDSTVRVWDVNT-GEMVNT-----------LIHHCEAVLHLRFS---NGM 326
+E ++ S +D + VWD++ GE +T IH FS N
Sbjct: 334 HNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEP 393
Query: 327 MVTC--SKDRSIAVWDMV 342
+ C S+D + VW M
Sbjct: 394 WIICSVSEDNIMQVWQMA 411
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 101/231 (43%), Gaps = 33/231 (14%)
Query: 267 IKVLTGHTGSVLCLQYDER---VIISGSSDSTVRVWDVNTGEMVNTLIHHCEAVLHLRFS 323
I++ H G V +Y + VI + + S V V+D C+ L LR
Sbjct: 125 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGH 184
Query: 324 -------------NGMMVTCSKDRSIAVWDM-VSPNE---ITLRRVLVGHRAAVNVVDFD 366
NG +++ S D +I +WD+ +P E I + + GH A V V +
Sbjct: 185 QKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWH 244
Query: 367 ---EKYIVSASGDRTIKVWNT---SSCEFVRTLNGHKRGIACLQ---YRDRLVVSGSSDN 417
E S + D+ + +W+T ++ + T++ H + CL Y + ++ +GS+D
Sbjct: 245 LLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADK 304
Query: 418 TIRLWDI-ECGACLRVLEGHEELVRCIRFDAKR---IVSGAYDGKIKVWNL 464
T+ LWD+ L E H++ + +++ + S D ++ VW+L
Sbjct: 305 TVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 355
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 71/156 (45%), Gaps = 28/156 (17%)
Query: 253 DNTIKVWDRVSLQCIK---VLTGHTGSVLCLQ---YDERVIISGSSDSTVRVWDV-NTGE 305
D + +WD + K + HT V CL Y E ++ +GS+D TV +WD+ N
Sbjct: 257 DQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL 316
Query: 306 MVNTLIHHCEAVLHLRFS---NGMMVTCSKDRSIAVWDMVSPNE-----------ITLRR 351
+++ H + + +++S ++ + DR + VWD+ E L
Sbjct: 317 KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLF 376
Query: 352 VLVGHRAAVNVVDF----DEKYIV-SASGDRTIKVW 382
+ GH A ++ DF +E +I+ S S D ++VW
Sbjct: 377 IHGGHTAKIS--DFSWNPNEPWIICSVSEDNIMQVW 410
Score = 31.6 bits (70), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 56/138 (40%), Gaps = 28/138 (20%)
Query: 226 RINCRSENSKGVYCLQYDDHKIVSGLRDNTIKVWDRVSLQC-IKVLTGHTGSVLCLQY-- 282
+NC S N Y + + +G D T+ +WD +L+ + H + +Q+
Sbjct: 283 EVNCLSFNP-------YSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP 335
Query: 283 -DERVIISGSSDSTVRVWDVNT-GEMVNT-----------LIHHCEAVLHLRFS---NGM 326
+E ++ S +D + VWD++ GE +T IH FS N
Sbjct: 336 HNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEP 395
Query: 327 MVTC--SKDRSIAVWDMV 342
+ C S+D + VW M
Sbjct: 396 WIICSVSEDNIMQVWQMA 413
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 100/236 (42%), Gaps = 17/236 (7%)
Query: 250 GLRDNTIKVWDRVSLQCIKVLTGHTGSVLCLQYDERVIISGSSDSTVRVWDVNTGE-MVN 308
G +++WD + ++ +T H+ V L ++ ++ SGS + DV E V
Sbjct: 85 GTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVA 144
Query: 309 TLIHHCEAVLHLRFS--NGMMVTCSKDRSIAVWDMVSPNEITL--RRVLVGHRAAVNVV- 363
TL H + V LR++ + + D + VW +P E + H+ AV V
Sbjct: 145 TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPS-APGEGGWVPLQTFTQHQGAVKAVA 203
Query: 364 --DFDEKYIVSASG--DRTIKVWNTSSCEFVRTLNGHKRGIACL---QYRDRLVVSGSSD 416
+ + + G DR I++WN S + ++ H + + L Y++ + G +
Sbjct: 204 WCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQ 263
Query: 417 NTIRLWDIECGACLRVLEGHEELVRCIRF--DAKRIVSGAYDGKIKVWNLVAALDP 470
N + +W A + L+GH V + D + S A D +++W LDP
Sbjct: 264 NQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCF-ELDP 318
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/218 (21%), Positives = 103/218 (47%), Gaps = 20/218 (9%)
Query: 253 DNTIKVWDRVSLQCIKVLT----GHTGSVLCLQYDERVIISGSSDSTVRVWDVNTGEMVN 308
DN++ +W S +++L G S + + + G+S + V++WDV + +
Sbjct: 44 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 103
Query: 309 TLIHHCEAVLHLRFSNGMMVTCSKDRSIAVWDM-VSPNEITLRRVLVGHRAAVNVVDF-- 365
+ H V L +++ ++ + S+ I D+ V+ + + L GH V + +
Sbjct: 104 NMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVA---TLSGHSQEVCGLRWAP 160
Query: 366 DEKYIVSASGDRTIKVWNTSSCEF----VRTLNGHK---RGIACLQYRDRLVVSG--SSD 416
D +++ S D + VW ++ E ++T H+ + +A ++ ++ +G +SD
Sbjct: 161 DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSD 220
Query: 417 NTIRLWDIECGACLRVLEGHEELVRCI-RFDAKRIVSG 453
IR+W++ GACL ++ H ++ + K ++SG
Sbjct: 221 RHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISG 258
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 56/105 (53%), Gaps = 6/105 (5%)
Query: 360 VNVVDFDEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRG-----IACLQYRDRLVVSGS 414
+N+VD+ +++ + D ++ +W+ SS + ++ L + G +A ++ + L V G+
Sbjct: 28 LNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAV-GT 86
Query: 415 SDNTIRLWDIECGACLRVLEGHEELVRCIRFDAKRIVSGAYDGKI 459
S ++LWD++ LR + H V + +++ + SG+ G I
Sbjct: 87 SSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHI 131
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 32/154 (20%), Positives = 63/154 (40%), Gaps = 17/154 (11%)
Query: 243 DDHKIVSGLRDNTIKVWDRVSLQC----IKVLTGHTGSVLCL-----QYDERVIISGSSD 293
D + SG DN + VW + ++ T H G+V + Q + G+SD
Sbjct: 161 DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSD 220
Query: 294 STVRVWDVNTGEMVNTLIHH---CEAVLHLRFSNGMMVTCSKDRSIAVWDMVSPNEITLR 350
+R+W+V +G ++ + H C + + + + +W + ++
Sbjct: 221 RHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVA-- 278
Query: 351 RVLVGHRAAVNVVDF--DEKYIVSASGDRTIKVW 382
L GH + V + D + SA+ D T+++W
Sbjct: 279 -ELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 99/209 (47%), Gaps = 22/209 (10%)
Query: 253 DNTIKVW--DRVSLQCIKVLT-GHTGSVLCLQYDE--RVIISGSSDSTVRVWDVNTG--E 305
D I++W + S C VL+ GH +V + + + S S D+T +W N E
Sbjct: 37 DRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFE 96
Query: 306 MVNTLIHHCEAVLHLRF--SNGMMVTCSKDRSIAVWDMVSPNEITLRRVLVGHRAAVNVV 363
V TL H V + + S ++ TCS+D+S+ VW++ +E VL H V V
Sbjct: 97 CVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHV 156
Query: 364 DF--DEKYIVSASGDRTIKVWNTSSCEFV--RTLNGHKRGIACLQY--RDRLVVSGSSDN 417
+ ++ + SAS D T+K++ ++V TL GH+ + L + + + S S D
Sbjct: 157 VWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDR 216
Query: 418 TIRLWDIECGACLRVLEGHEELVRCIRFD 446
T+R+W + L G+E+ V C D
Sbjct: 217 TVRIW-------RQYLPGNEQGVACSGSD 238
Score = 35.8 bits (81), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 17/108 (15%)
Query: 370 IVSASGDRTIKVWNTSS----CEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLW- 422
+ S GDR I++W T C+ V + GH+R + + + + S S D T +W
Sbjct: 31 LASCGGDRRIRIWGTEGDSWICKSVLS-EGHQRTVRKVAWSPCGNYLASASFDATTCIWK 89
Query: 423 ----DIECGACLRVLEGHEELVRCIRF--DAKRIVSGAYDGKIKVWNL 464
D E C+ LEGHE V+ + + + + + D + VW +
Sbjct: 90 KNQDDFE---CVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEV 134
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 55/275 (20%), Positives = 103/275 (37%), Gaps = 55/275 (20%)
Query: 118 YIVSASGDRTIKVW--NTSSCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRY--- 170
Y+ SAS D T +W N E V TL GH+ + + + L+ + S D ++
Sbjct: 75 YLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEV 134
Query: 171 --RDEFQIVS--SSHDDTI--LIWDFLNYSETPIQXXXXXXXXXXXXXIENNWRMGKFLL 224
DE++ VS +SH + ++W + S+ + E++W L
Sbjct: 135 DEEDEYECVSVLNSHTQDVKHVVW---HPSQELLASASYDDTVKLYREEEDDWVCCATL- 190
Query: 225 QRINCRSENSKGVYCLQYD--DHKIVSGLRDNTIKVWDRV---------------SLQCI 267
+ V+ L +D ++ S D T+++W + S +CI
Sbjct: 191 ------EGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCI 244
Query: 268 KVLTG-HTGSVLCLQYDE--RVIISGSSDSTVRVWDVNTGEMVNTLIHHCEAVLHLRFSN 324
L+G H+ ++ + + + + + D +RV+ + A LH S
Sbjct: 245 CTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQ 304
Query: 325 ------------GMMVTCSKDRSIAVWDMVSPNEI 347
G++ +CS D +A W P +
Sbjct: 305 DVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGL 339
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 56/234 (23%), Positives = 101/234 (43%), Gaps = 34/234 (14%)
Query: 262 VSLQCIKVLTGHTGSVLCLQYDERVIISGSSDSTVRVWDVNTGEMVNTLIHHCEAVLH-- 319
S+ IK L + + + + ++ +GS+D +++ V + TLI + H
Sbjct: 2 ASINLIKSLKLYKEKIWSFDFSQGILATGSTDRKIKLVSVKYDDF--TLIDVLDETAHKK 59
Query: 320 ------LRFSNGMMVTCSKDRSIAVWDMVSPN----EITLRRVLVGHRAAVNVVDF--DE 367
R ++ S D ++++W E+ L ++ GH V V + D
Sbjct: 60 AIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDG 119
Query: 368 KYIVSASGDRTIKVWNTSSC----EFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRL 421
Y+ + S D+++ +W T E + L H + + + + + L+ S S D+T+R+
Sbjct: 120 YYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRI 179
Query: 422 W-----DIECGACLRVLEGHEELVRCIRFDAK----RIVSGAYDGKIKVWNLVA 466
W D EC A VL GHE V FD R+ SG+ D ++VW +
Sbjct: 180 WKDYDDDWECVA---VLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMG 230
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 72/153 (47%), Gaps = 20/153 (13%)
Query: 247 IVSGLRDNTIKVWDRVS--LQCIKVLTGHTGSVLCLQYDERV----IISGSSDSTVRVWD 300
+ S D+T+++W +C+ VL GH G+V +D+ + SGS DSTVRVW
Sbjct: 168 LASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWK 227
Query: 301 VNTGEMVNTLIHHCEAVL---HLR-------FSNGMMVTCSKDRSIAVWDMVSPN-EITL 349
+ + CEA+L H R NG++ + D +AV++ V ++
Sbjct: 228 YMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFA 287
Query: 350 RRVLVGHRAAVNVVDFDE---KYIVSASGDRTI 379
+R L +NVV + E K I++ GD I
Sbjct: 288 KRALCHGVYEINVVKWLELNGKTILATGGDDGI 320
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 93/210 (44%), Gaps = 24/210 (11%)
Query: 237 VYCLQYDDHKIVSGLRDNTIKV----WDRVSLQCIKVLTGHTGSVLCLQY--DERVIISG 290
++ + + +G D IK+ +D +L + T H ++ + + ++ +G
Sbjct: 17 IWSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAG 76
Query: 291 SSDSTVRVWDVNTG-------EMVNTLIHHCEAVLHLRFSNG--MMVTCSKDRSIAVWDM 341
S DSTV +W +++ + H V + +SN + TCS+D+S+ +W+
Sbjct: 77 SFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWET 136
Query: 342 -VSPNEITLRRVLVGHRAAVNVVDF--DEKYIVSASGDRTIKVWN--TSSCEFVRTLNGH 396
S E VL H V V + E + S+S D T+++W E V LNGH
Sbjct: 137 DESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGH 196
Query: 397 KRGIACLQYRDRLVV----SGSSDNTIRLW 422
+ + + V SGS D+T+R+W
Sbjct: 197 EGTVWSSDFDKTEGVFRLCSGSDDSTVRVW 226
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 15/86 (17%)
Query: 116 EKYIVSASGDRTIKVWNT--SSCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRYRDE 173
E + S+S D T+++W E V LNGH+ V S D T
Sbjct: 165 EALLASSSYDDTVRIWKDYDDDWECVAVLNGHEG----------TVWSSDFDKT---EGV 211
Query: 174 FQIVSSSHDDTILIWDFLNYSETPIQ 199
F++ S S D T+ +W ++ E Q
Sbjct: 212 FRLCSGSDDSTVRVWKYMGDDEDDQQ 237
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 81/167 (48%), Gaps = 17/167 (10%)
Query: 324 NGMMVTCSKDRSIAVWDMVS-PNE---ITLRRVLVGHRAAVNVVDFD---EKYIVSASGD 376
+G +++ S D +I +WD+ + P E + + + GH A V V + E S + D
Sbjct: 190 SGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADD 249
Query: 377 RTIKVWNTSSCEFVR---TLNGHKRGIACLQ---YRDRLVVSGSSDNTIRLWDI-ECGAC 429
+ + +W+T S + +++ H + CL Y + ++ +GS+D T+ LWD+
Sbjct: 250 QKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK 309
Query: 430 LRVLEGHEELVRCIRFDAKR---IVSGAYDGKIKVWNLVAALDPRAP 473
L E H++ + +++ + S D ++ VW+L + ++P
Sbjct: 310 LHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSP 356
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 73/156 (46%), Gaps = 28/156 (17%)
Query: 253 DNTIKVWDRVSLQCIK---VLTGHTGSVLCLQ---YDERVIISGSSDSTVRVWDV-NTGE 305
D + +WD S K + HT V CL Y E ++ +GS+D TV +WD+ N
Sbjct: 249 DQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL 308
Query: 306 MVNTLIHHCEAVLHLRFS---NGMMVTCSKDRSIAVWDMV------SPNEI-----TLRR 351
+++ H + + +++S ++ + DR + VWD+ SP + L
Sbjct: 309 KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLF 368
Query: 352 VLVGHRAAVNVVDF----DEKYIV-SASGDRTIKVW 382
+ GH A ++ DF +E +++ S S D ++VW
Sbjct: 369 IHGGHTAKIS--DFSWNPNEPWVICSVSEDNIMQVW 402
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 11/81 (13%)
Query: 226 RINCRSENSKGVYCLQYDDHKIVSGLRDNTIKVWDRVSLQC-IKVLTGHTGSVLCLQY-- 282
+NC S N Y + + +G D T+ +WD +L+ + H + +Q+
Sbjct: 275 EVNCLSFNP-------YSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP 327
Query: 283 -DERVIISGSSDSTVRVWDVN 302
+E ++ S +D + VWD++
Sbjct: 328 HNETILASSGTDRRLNVWDLS 348
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/236 (21%), Positives = 97/236 (41%), Gaps = 18/236 (7%)
Query: 242 YDDHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVLCLQYDERVIISGSSDSTVRVWDV 301
+D + GL + + ++D S ++ + GH V CL ++ V+ SGS + DV
Sbjct: 144 HDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDV 203
Query: 302 N-TGEMVNTLIHHCEAVLHLRF-SNGM-MVTCSKDRSIAVWDMVSPNEITLRRVLVGHRA 358
+ TL H V L + S+G+ + + D + +WD S + H A
Sbjct: 204 RIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSS---IPKFTKTNHNA 260
Query: 359 AVNVV---DFDEKYIVSASG--DRTIKVWNTSSCEFVRTLNGHKRGIACL---QYRDRLV 410
AV V + + + G D+ I WN ++ V T++ + + + ++ +
Sbjct: 261 AVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMS 320
Query: 411 VSGSSDNTIRLWDIECGACLRVLE--GHEE--LVRCIRFDAKRIVSGAYDGKIKVW 462
G DN + +W + ++ H+ L + D + + + A D +K W
Sbjct: 321 THGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFW 376
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/287 (18%), Positives = 106/287 (36%), Gaps = 56/287 (19%)
Query: 115 DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRYRDEF 174
D ++ G+ + +++ S +RT+ GH+ + CL + ++ SGS I + D
Sbjct: 145 DGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDV- 203
Query: 175 QIVSSSHDDTILIWDFLNYSETPIQXXXXXXXXXXXXXIENNWRMGKFLLQRINCRSENS 234
R+ + + S
Sbjct: 204 -------------------------------------------RIANHQIGTLQGHSSEV 220
Query: 235 KGVYCLQYDDHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVLCL-----QYDERVIIS 289
G+ + D ++ SG DN +++WD S T H +V + Q +
Sbjct: 221 CGL-AWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGG 279
Query: 290 GSSDSTVRVWDVNTGEMVNTLIHHCE--AVLHLRFSNGMMVTCS-KDRSIAVWDMVSPNE 346
G+ D + W+ TG VNT+ + +++ S +M T D ++++W S +
Sbjct: 280 GTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSY-SSSG 338
Query: 347 ITLRRVLVGH--RAAVNVVDFDEKYIVSASGDRTIKVWNTSSCEFVR 391
+T + + H R + + D + + +A+ D +K W + V+
Sbjct: 339 LTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVK 385
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/231 (22%), Positives = 97/231 (41%), Gaps = 53/231 (22%)
Query: 247 IVSGLRDNTIKVW----DRVSLQCIKVLTGHTGSVLCLQYDERVIISGSS--DSTVRVWD 300
+V+G D+ +KVW +R+ LQ L GH V+ + + I+ SS D+ +R+WD
Sbjct: 51 VVTGSLDDLVKVWKWRDERLDLQW--SLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWD 108
Query: 301 VNTGEMVNTLIHHCEAVLHLRFSNGMMVTCSKDRSIAVWDMVSPNEITLRRVLVGHRAAV 360
+ G+ + ++ L FS
Sbjct: 109 LENGKQIKSIDAGPVDAWTLAFSP------------------------------------ 132
Query: 361 NVVDFDEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNT 418
D +Y+ + + + ++ S + +L+ + I + Y + + SG+ D
Sbjct: 133 -----DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGI 187
Query: 419 IRLWDIECGACLRVLEGHEELVRCIRF--DAKRIVSGAYDGKIKVWNLVAA 467
I ++DI G L LEGH +R + F D++ +V+ + DG IK++++ A
Sbjct: 188 INIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA 238
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 82/155 (52%), Gaps = 11/155 (7%)
Query: 277 VLCLQY--DERVIISGSSDSTVRVWDVNTGEMVNTLIHHCEAVLHLRFS--NGMMVTCSK 332
+L + Y D + + SG+ D + ++D+ TG++++TL H + L FS + ++VT S
Sbjct: 167 ILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD 226
Query: 333 DRSIAVWDMVSPNEITLRRVLVGHRAAVNVVDF--DEKYIVSASGDRTIKVWNTSSCEFV 390
D I ++D+ N L L GH + V V F D+ + VS+S D+++KVW+ + V
Sbjct: 227 DGYIKIYDVQHAN---LAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCV 283
Query: 391 RTLNGHKRGIACLQYRDR--LVVSGSSDNTIRLWD 423
T H+ + ++Y +VS D I ++D
Sbjct: 284 HTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 105/221 (47%), Gaps = 13/221 (5%)
Query: 253 DNTIKVWDRVSLQCIKVLTGHTGSVLCLQY--DERVIISGSSDSTVRVWDVNTGEMVNTL 310
D I++WD + + IK + L + D + + +G+ V ++ V +G+ +L
Sbjct: 101 DAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSL 160
Query: 311 IHHCEAVLHLRFS--NGMMVTCSKDRSIAVWDMVSPNEITLRRVLVGHRAAVNVVDF--D 366
+ +L + +S + + + D I ++D+ + L L GH + + F D
Sbjct: 161 DTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGK---LLHTLEGHAMPIRSLTFSPD 217
Query: 367 EKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDI 424
+ +V+AS D IK+++ TL+GH + + + D VS SSD ++++WD+
Sbjct: 218 SQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDV 277
Query: 425 ECGACLRVLEGHEELVRCIRFDAK--RIVSGAYDGKIKVWN 463
C+ H++ V ++++ +IVS D +I +++
Sbjct: 278 GTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 54/102 (52%), Gaps = 4/102 (3%)
Query: 243 DDHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVLCLQY--DERVIISGSSDSTVRVWD 300
D +V+ D IK++D L+GH VL + + D+ +S SSD +V+VWD
Sbjct: 217 DSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWD 276
Query: 301 VNTGEMVNTLIHHCEAVLHLRFS-NG-MMVTCSKDRSIAVWD 340
V T V+T H + V ++++ NG +V+ D+ I ++D
Sbjct: 277 VGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 108 ISLLPNFDEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYR--DRLVVSGSSD 165
+S+ + D KY+ S + D I +++ ++ + + TL GH I L + +L+V+ S D
Sbjct: 168 LSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDD 227
Query: 166 NTIRYRD 172
I+ D
Sbjct: 228 GYIKIYD 234
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/254 (23%), Positives = 113/254 (44%), Gaps = 35/254 (13%)
Query: 242 YDDHKIVSGLRDNTIKVWDRVSLQCIKVL----TGHTGSVLCLQYDERVIISGSSDSTVR 297
+D S D T+KVWD +LQ V T ++ + + ++ G+ V+
Sbjct: 110 HDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQ 169
Query: 298 VWDVNTGEMVNTLIHHCEAVLHLRFS---NGMMVTCSKDRSIAVWDM--VSPNEITLRR- 351
+ D+ +G + L H + +L + +S + ++ T S D + +WD+ S ITL +
Sbjct: 170 LCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQH 229
Query: 352 ----------VLVGHRAAVNVVDF--DEKYIVSASGDRTIKVWNTSSCE-----FVRTLN 394
H VN + F D ++++ D +++WN+S+ E + + N
Sbjct: 230 NGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCN 289
Query: 395 GHKRG----IACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDA--K 448
K+G ++C + + V S TI ++ + G + +L+GH + V C F + +
Sbjct: 290 NSKKGLKFTVSCGCSSEFVFVPYGS--TIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQ 347
Query: 449 RIVSGAYDGKIKVW 462
+ SG+ D I W
Sbjct: 348 ELYSGSRDCNILAW 361
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 65/124 (52%), Gaps = 14/124 (11%)
Query: 356 HRAAVNVVDF---DEKYIVSASGDRTIKVWNTSSCE------FVRTLNGHKRGIACLQYR 406
HR +V V + D S+S D+T+KVW+T++ + F T+ H ++ + +
Sbjct: 98 HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHH--MSPVSTK 155
Query: 407 DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDAKR---IVSGAYDGKIKVWN 463
LV G+ ++L D++ G+C +L+GH + + + + + + + + D ++K+W+
Sbjct: 156 HCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWD 215
Query: 464 LVAA 467
+ A
Sbjct: 216 VRRA 219
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/240 (20%), Positives = 97/240 (40%), Gaps = 57/240 (23%)
Query: 273 HTGSVLCLQYDE---RVIISGSSDSTVRVWDVNTGEMVNTLIHHCEAVLHL--------R 321
H G + L + R ++SG SD + ++D+ + + C+AV + R
Sbjct: 42 HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQS--YYTCKAVCSIGRDHPDVHR 99
Query: 322 FS----------NGMMVTCSKDRSIAVWD---MVSPNEITLRRVLVGHRAAVNVVDFDEK 368
+S GM + S D+++ VWD + + + + H + K
Sbjct: 100 YSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMS----PVSTK 155
Query: 369 YIVSASGDRTIKV----WNTSSCEFVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRL 421
+ + A G R KV + SC + L GH++ I + + D ++ + S+D+ ++L
Sbjct: 156 HCLVAVGTRGPKVQLCDLKSGSCSHI--LQGHRQEILAVSWSPRYDYILATASADSRVKL 213
Query: 422 WDI-ECGACLRVLEGH----EELVR-------------CIRFDAKRIVSGAYDGKIKVWN 463
WD+ CL L+ H + V C D +++ D ++++WN
Sbjct: 214 WDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWN 273
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 95/203 (46%), Gaps = 23/203 (11%)
Query: 287 IISGSSDSTVRVWDVNTGEMVNTLIHHCEAVLHLRFS--NGMMVTCSKDRSIAVWDMVSP 344
IISGS D+TV +++ + +T H + V +R++ + + D +I +++ V
Sbjct: 163 IISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDG 222
Query: 345 NEI------TLRRVLVGHRAAVNVVDF--DEKYIVSASGDRTIKVWNTSSCEFVRTLNGH 396
+ +L+ V H +V + + D I SAS D+TIK+WN ++ + +T+
Sbjct: 223 TKTGVFEDDSLKNV--AHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVG 280
Query: 397 KR------GIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCI--RFDAK 448
R GI + + +VS S++ I + E G+ +V GH + + + D K
Sbjct: 281 TRIEDQQLGII---WTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGK 337
Query: 449 RIVSGAYDGKIKVWNLVAALDPR 471
+ S +G I W++ + R
Sbjct: 338 TLFSADAEGHINSWDISTGISNR 360
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/234 (20%), Positives = 100/234 (42%), Gaps = 21/234 (8%)
Query: 246 KIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVLCLQY--DERVIISGSSDSTVRVWDVNT 303
+I+SG DNT+ +++ + HT V ++Y D + S D T+ +++
Sbjct: 162 RIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVD 221
Query: 304 GEMVNTL-------IHHCEAVLHLRFS--NGMMVTCSKDRSIAVWDMVSPNEITLRRVLV 354
G + H +V L +S + + S D++I +W++ + + + V
Sbjct: 222 GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLK--VEKTIPV 279
Query: 355 GHR---AAVNVVDFDEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYR--DRL 409
G R + ++ + ++ +VS S + I N + GH + I L +
Sbjct: 280 GTRIEDQQLGII-WTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKT 338
Query: 410 VVSGSSDNTIRLWDIECGACLRVL-EGHEELVRCIRFDAKR-IVSGAYDGKIKV 461
+ S ++ I WDI G RV + H ++ I+ +K + + ++D +KV
Sbjct: 339 LFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKV 392
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 79/394 (20%), Positives = 151/394 (38%), Gaps = 78/394 (19%)
Query: 115 DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKR----GIACLQYRDRLV---VSG----- 162
D I SAS D+TIK+WN ++ + +T+ R + + + LV +G
Sbjct: 250 DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFV 309
Query: 163 ----SSDNTIRYRDEFQI--VSSSHDDTILIWDFLNYSETPIQXXXXXXXXXXXXXIENN 216
S + +RY I +SSS D L F +E I N+
Sbjct: 310 NPELGSIDQVRYGHNKAITALSSSADGKTL---FSADAEGHI----------------NS 350
Query: 217 WRMGKFLLQR---------INCRSENSKG-VYCLQYDDH-KIV----SGLRDNTIKVWDR 261
W + + R I SKG ++ + +DDH K+V SG+ D++ V ++
Sbjct: 351 WDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGV-DSSKAVANK 409
Query: 262 VSLQCIKVLTGHTGSVLCLQYDERVIISGSSDSTVRVWDVNTGEMVNTLIHHCEAVLHLR 321
+S Q + + G + + + I + G++ I + + + L
Sbjct: 410 LSSQPLGLAVSADGDIAVAACYKHIAI------------YSHGKLTEVPISYNSSCVALS 457
Query: 322 FSNGMMVTCSKDRSIAVWDMVSPNEITLRRVLVGHRAAVNVVDF--DEKYIVSASGDRTI 379
+ +D + V+ + + ++ ++ H A + V F + ++V+ R +
Sbjct: 458 NDKQFVAVGGQDSKVHVYKLSGASVSEVKTIV--HPAEITSVAFSNNGAFLVATDQSRKV 515
Query: 380 ---KVWNTSSCEFVRTLNGHKRGIACLQYRDRLV--VSGSSDNTIRLWDIECGA----CL 430
V N + H +AC+ + V +GS DN++ +W++ + +
Sbjct: 516 IPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIII 575
Query: 431 RVLEGHEELVRCIRFDAKRIVSGAYDGKIKVWNL 464
+ + I + IVS D IK WN+
Sbjct: 576 KGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 609
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/295 (20%), Positives = 130/295 (44%), Gaps = 50/295 (16%)
Query: 231 SENSKGVYCLQYD----------DHKIVSGLRDN-TIKVWD----RVSLQCIKVLTGHTG 275
+++ K + LQ D ++KI++G DN +++++ ++ + + H+
Sbjct: 55 ADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSS 114
Query: 276 SVLCLQYDER---VIISGSSDSTVRVWDVN---------TGEMVNTLIHHCEAVLHLRFS 323
SV ++++ + V+ SG ++ + +WD+N T + + V+ L ++
Sbjct: 115 SVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWN 174
Query: 324 NGM---MVTCSKDRSIAVWDMVSPNEI---TLRRVLVGHRAAVNVVDFDEKY---IVSAS 374
+ + ++WD+ + E+ + G + ++VV++ K + +A+
Sbjct: 175 QSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATAT 234
Query: 375 G---DRTIKVWNTSSCEF-VRTLN-GHKRGIACLQY---RDRLVVSGSSDNTIRLWDIEC 426
G D +I +W+ + ++TLN GH++GI L + + L++S DNT+ LW+ E
Sbjct: 235 GSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPES 294
Query: 427 GACLRVLEGHEELVRCIRFDAKR---IVSGAYDGKIKV---WNLVAALDPRAPTT 475
L +F + ++D KI+V NL LD + T
Sbjct: 295 AEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETET 349
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 93/232 (40%), Gaps = 39/232 (16%)
Query: 224 LQRINCRSENSKGVYCLQYDDHKIVSGLRDNTIKVWDRVSLQCIKVLTGHT--------- 274
+ R + S + K V D+ + SG + I +WD +C + + +T
Sbjct: 106 MARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMN--KCTESPSNYTPLTPGQSMS 163
Query: 275 --GSVLCLQYDE---RVIISGSSDSTVRVWDVNTGEMV--------NTLIHHCEAVLHLR 321
V+ L +++ V S S + +WD+ + V N+ I +V+
Sbjct: 164 SVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWH 223
Query: 322 FSNGMMVTCS----KDRSIAVWDMVSPNEITLRRVLVGHRAAVNVVDF---DEKYIVSAS 374
N V + D SI +WD+ + N L+ + GH+ + +D+ DE ++S+
Sbjct: 224 PKNSTRVATATGSDNDPSILIWDLRNAN-TPLQTLNQGHQKGILSLDWCHQDEHLLLSSG 282
Query: 375 GDRTIKVWNTSSCEFVRTLNGHKRGIACLQYR-----DRLVVSGSSDNTIRL 421
D T+ +WN S E + RG C + + L S DN I +
Sbjct: 283 RDNTVLLWNPESAEQLSQFPA--RGNWCFKTKFAPEAPDLFACASFDNKIEV 332
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 19/76 (25%)
Query: 119 IVSASG---DRTIKVWNTSSCEF-VRTLN-GHKRGIACLQYRDRLVVSGSSDNTIRYRDE 173
+ +A+G D +I +W+ + ++TLN GH++GI L + ++DE
Sbjct: 230 VATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWC--------------HQDE 275
Query: 174 FQIVSSSHDDTILIWD 189
++SS D+T+L+W+
Sbjct: 276 HLLLSSGRDNTVLLWN 291
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 32/94 (34%)
Query: 177 VSSSHDDTILIWDFLNYSETPIQXXXXXXXXXXXXXIENNWRMGKFLLQRINCRSENSKG 236
S +D +ILIWD N + TP+Q + KG
Sbjct: 234 TGSDNDPSILIWDLRN-ANTPLQT----------------------------LNQGHQKG 264
Query: 237 VYCLQY---DDHKIVSGLRDNTIKVWDRVSLQCI 267
+ L + D+H ++S RDNT+ +W+ S + +
Sbjct: 265 ILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQL 298
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 100/209 (47%), Gaps = 26/209 (12%)
Query: 252 RDNTIKVWDRVSLQCIKVLTGHTGSVLCLQYD--ERVIISGSSDSTVRVWDVNTGEMVNT 309
+D++ VW ++ + + L GHTG++ + D + ++GS+D ++++WDV+ G+ V T
Sbjct: 52 KDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVAT 111
Query: 310 LI--------------HHCEAVLHLRFSN-GMMVTCSKDRSIAVWDMVSPNEITLRRVLV 354
++ A+L N G + +R A ++ +E + +++
Sbjct: 112 WKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIIT 171
Query: 355 GH---RAAVNVVDFDEKYIVSASGDRTIKVWNTS-SCEFVRTLNGHKRGIACLQYRDRLV 410
A V KYI++ D I ++ S + E+V +++ H++ I+ +Q+ L
Sbjct: 172 HEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLT 231
Query: 411 --VSGSSDNTIRLWDIECGACLRVLEGHE 437
++ S D L D+ + L+VL+ +E
Sbjct: 232 YFITSSRDTNSFLVDV---STLQVLKKYE 257
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 353 LVGHRAAVNVVDFDEK--YIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYR--DR 408
L GH + V ++++ + S S D + VW + + E + TL+GH I + +
Sbjct: 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTK 87
Query: 409 LVVSGSSDNTIRLWDIECGACL 430
V+GS+D +I+LWD+ G C+
Sbjct: 88 YCVTGSADYSIKLWDVSNGQCV 109
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 393 LNGHKRGIACLQYRDR--LVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--AK 448
L GH+R + ++Y L+ S S D++ +W G L L+GH + I D K
Sbjct: 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTK 87
Query: 449 RIVSGAYDGKIKVWNL 464
V+G+ D IK+W++
Sbjct: 88 YCVTGSADYSIKLWDV 103
Score = 35.4 bits (80), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 54/262 (20%), Positives = 105/262 (40%), Gaps = 45/262 (17%)
Query: 81 ENLLSRMCHYQHGHINTYLKPMLQRDFISLLPNFDEKYIVSASGDRTIKVWNTSSCEFVR 140
ENL + H + + + +P+ Q + N + + S S D + VW + + E +
Sbjct: 14 ENLYFQGSHMKAIKLTGHERPLTQVKY-----NKEGDLLFSCSKDSSASVWYSLNGERLG 68
Query: 141 TLNGHKRGIACLQYR--DRLVVSGSSDNTIRYRDEFQIVSSSHDDTILIWDFLNYSETPI 198
TL+GH I + + V+GS+D +I+ D S+ + W S P+
Sbjct: 69 TLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWD------VSNGQCVATWK----SPVPV 118
Query: 199 QXXXXXXXXXXXXXIENNWRMGKFLLQRINCRSENSKGVYCLQYDDHKIVSGLRDNTIKV 258
+ G + L ++ +N + + + RD+
Sbjct: 119 KRVEFSP-------------CGNYFLAILDNVMKNPGSINIYEIE--------RDSATHE 157
Query: 259 WDRVSLQCIKVLTGHTG----SVLCLQYDERVIISGSSDSTVRVWDV-NTGEMVNTLIHH 313
+VS + I + H G +V + II+G D + +DV N E V+++ H
Sbjct: 158 LTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLH 217
Query: 314 CEAVLHLRFSNGM--MVTCSKD 333
+++ ++FS + +T S+D
Sbjct: 218 EKSISDMQFSPDLTYFITSSRD 239
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/175 (21%), Positives = 74/175 (42%), Gaps = 20/175 (11%)
Query: 270 LTGHTGSVLCLQYDERV---IISGSSDSTVRVWDVNTGEMVNTLIHH----------CEA 316
L GH L ++ + ++S S D TV +WD+N G ++ E
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 234
Query: 317 VLHLRFSNGMMVTCSKDRSIAVWDMVSPNEITLRRVLVGHRAAVNVVDFD---EKYIVSA 373
V + + + D+ + +WD S ++ H A VN + F+ E + +
Sbjct: 235 VAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATG 294
Query: 374 SGDRTIKVWNTSSCEF-VRTLNGHKRGIACLQY---RDRLVVSGSSDNTIRLWDI 424
S D+T+ +W+ + + + T HK I + + + ++ S +D + +WD+
Sbjct: 295 SADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 71/159 (44%), Gaps = 28/159 (17%)
Query: 253 DNTIKVWDRVSLQCIK---VLTGHTGSVLCLQ---YDERVIISGSSDSTVRVWDV-NTGE 305
D + +WD S K ++ HT V CL Y E ++ +GS+D TV +WD+ N
Sbjct: 251 DQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL 310
Query: 306 MVNTLIHHCEAVLHLRFS---NGMMVTCSKDRSIAVWDMVSPNE-----------ITLRR 351
++T H + + + +S ++ + DR + VWD+ E L
Sbjct: 311 KLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLF 370
Query: 352 VLVGHRAAVNVVDF----DEKYIV-SASGDRTIKVWNTS 385
+ GH A ++ DF +E +++ S S D ++W +
Sbjct: 371 IHGGHTAKIS--DFSWNPNEPWVICSVSEDNIXQIWQXA 407
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 37/81 (45%), Gaps = 11/81 (13%)
Query: 226 RINCRSENSKGVYCLQYDDHKIVSGLRDNTIKVWDRVSLQC-IKVLTGHTGSVLCLQY-- 282
+NC S N Y + + +G D T+ +WD +L+ + H + + +
Sbjct: 277 EVNCLSFNP-------YSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSP 329
Query: 283 -DERVIISGSSDSTVRVWDVN 302
+E ++ S +D + VWD++
Sbjct: 330 HNETILASSGTDRRLNVWDLS 350
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 19/97 (19%)
Query: 393 LNGHKRGIACLQYRDRL---VVSGSSDNTIRLWDIECGA-------CLRVLEGHEELVRC 442
L GH++ L + L ++S S D+T+ LWDI G + GH +V
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 234
Query: 443 IRF---DAKRIVSGAYDGKIKVWNLVAALDPRAPTTT 476
+ + S A D K+ +W D R+ TT+
Sbjct: 235 VAWHLLHESLFGSVADDQKLXIW------DTRSNTTS 265
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/175 (21%), Positives = 74/175 (42%), Gaps = 20/175 (11%)
Query: 270 LTGHTGSVLCLQYDERV---IISGSSDSTVRVWDVNTGEMVNTLIHH----------CEA 316
L GH L ++ + ++S S D TV +WD+N G ++ E
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 234
Query: 317 VLHLRFSNGMMVTCSKDRSIAVWDMVSPNEITLRRVLVGHRAAVNVVDFD---EKYIVSA 373
V + + + D+ + +WD S ++ H A VN + F+ E + +
Sbjct: 235 VAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATG 294
Query: 374 SGDRTIKVWNTSSCEF-VRTLNGHKRGIACLQY---RDRLVVSGSSDNTIRLWDI 424
S D+T+ +W+ + + + T HK I + + + ++ S +D + +WD+
Sbjct: 295 SADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 71/156 (45%), Gaps = 28/156 (17%)
Query: 253 DNTIKVWDRVSLQCIK---VLTGHTGSVLCLQ---YDERVIISGSSDSTVRVWDV-NTGE 305
D + +WD S K ++ HT V CL Y E ++ +GS+D TV +WD+ N
Sbjct: 251 DQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL 310
Query: 306 MVNTLIHHCEAVLHLRFS---NGMMVTCSKDRSIAVWDMVSPNE-----------ITLRR 351
++T H + + + +S ++ + DR + VWD+ E L
Sbjct: 311 KLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLF 370
Query: 352 VLVGHRAAVNVVDF----DEKYIV-SASGDRTIKVW 382
+ GH A ++ DF +E +++ S S D +++W
Sbjct: 371 IHGGHTAKIS--DFSWNPNEPWVICSVSEDNIMQIW 404
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 37/81 (45%), Gaps = 11/81 (13%)
Query: 226 RINCRSENSKGVYCLQYDDHKIVSGLRDNTIKVWDRVSLQC-IKVLTGHTGSVLCLQY-- 282
+NC S N Y + + +G D T+ +WD +L+ + H + + +
Sbjct: 277 EVNCLSFNP-------YSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSP 329
Query: 283 -DERVIISGSSDSTVRVWDVN 302
+E ++ S +D + VWD++
Sbjct: 330 HNETILASSGTDRRLNVWDLS 350
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 43/106 (40%), Gaps = 19/106 (17%)
Query: 384 TSSCEFVRTLNGHKRGIACLQYRDRL---VVSGSSDNTIRLWDIECGA-------CLRVL 433
+ C L GH++ L + L ++S S D+T+ LWDI G +
Sbjct: 166 SGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIF 225
Query: 434 EGHEELVRCIRF---DAKRIVSGAYDGKIKVWNLVAALDPRAPTTT 476
GH +V + + S A D K+ +W D R+ TT+
Sbjct: 226 TGHSAVVEDVAWHLLHESLFGSVADDQKLMIW------DTRSNTTS 265
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/258 (21%), Positives = 111/258 (43%), Gaps = 46/258 (17%)
Query: 248 VSGLRDNTIKVWDRVSLQCIKVLTGHTGSVLCLQY---DERVIISGSSDSTVRVWDVNTG 304
V+G R I++ + +++QCIK GH ++ L++ D +++S S D +R+W++ T
Sbjct: 126 VAGSR-GIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD 184
Query: 305 EMV---NTLIHHCEAVLHLRFS--NGMMVTCSKDRSIAVWDMVSPNEITLRRVLVGHRAA 359
+V + H + VL + +++C D S+ +W I +R++ A
Sbjct: 185 TLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW------RINSKRMM---NAI 235
Query: 360 VNVVDFDEKYIVSASGDRTIKVWNTSSCEF--VRTLNGHKRGIACLQYRDRLVVSGSSDN 417
D++ ++T + + + F T + H+ + C+++ L++S S +N
Sbjct: 236 KESYDYNP--------NKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCEN 287
Query: 418 TIRLW----------DIECGACLRVLEGHEELVRC--------IRFDAKRIVSGAYDGKI 459
I W I+ + G + +C + F K + G GK+
Sbjct: 288 AIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKL 347
Query: 460 KVWNLVAALDPRAPTTTL 477
VW+L +A TTL
Sbjct: 348 YVWDLEVEDPHKAKCTTL 365
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 55/104 (52%), Gaps = 9/104 (8%)
Query: 370 IVSASGDR-TIKVWNTSSCEFVRTLNGHKRGIACLQYRDR---LVVSGSSDNTIRLWDIE 425
+++ +G R I++ N + + ++ GH I L++ R L++S S D+ +RLW+I+
Sbjct: 123 LLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 182
Query: 426 CGACLRVL---EGHEELVRCIRFD--AKRIVSGAYDGKIKVWNL 464
+ + EGH + V +D ++I+S D +K+W +
Sbjct: 183 TDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 226
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/258 (21%), Positives = 111/258 (43%), Gaps = 46/258 (17%)
Query: 248 VSGLRDNTIKVWDRVSLQCIKVLTGHTGSVLCLQY---DERVIISGSSDSTVRVWDVNTG 304
V+G R I++ + +++QCIK GH ++ L++ D +++S S D +R+W++ T
Sbjct: 90 VAGSR-GIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD 148
Query: 305 EMV---NTLIHHCEAVLHLRFS--NGMMVTCSKDRSIAVWDMVSPNEITLRRVLVGHRAA 359
+V + H + VL + +++C D S+ +W I +R++ A
Sbjct: 149 TLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW------RINSKRMM---NAI 199
Query: 360 VNVVDFDEKYIVSASGDRTIKVWNTSSCEF--VRTLNGHKRGIACLQYRDRLVVSGSSDN 417
D++ ++T + + + F T + H+ + C+++ L++S S +N
Sbjct: 200 KESYDYNP--------NKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCEN 251
Query: 418 TIRLW----------DIECGACLRVLEGHEELVRC--------IRFDAKRIVSGAYDGKI 459
I W I+ + G + +C + F K + G GK+
Sbjct: 252 AIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKL 311
Query: 460 KVWNLVAALDPRAPTTTL 477
VW+L +A TTL
Sbjct: 312 YVWDLEVEDPHKAKCTTL 329
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 55/104 (52%), Gaps = 9/104 (8%)
Query: 370 IVSASGDR-TIKVWNTSSCEFVRTLNGHKRGIACLQYRDR---LVVSGSSDNTIRLWDIE 425
+++ +G R I++ N + + ++ GH I L++ R L++S S D+ +RLW+I+
Sbjct: 87 LLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 146
Query: 426 CGACLRVL---EGHEELVRCIRFD--AKRIVSGAYDGKIKVWNL 464
+ + EGH + V +D ++I+S D +K+W +
Sbjct: 147 TDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 190
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/258 (22%), Positives = 112/258 (43%), Gaps = 46/258 (17%)
Query: 248 VSGLRDNTIKVWDRVSLQCIKVLTGHTGSVLCLQY---DERVIISGSSDSTVRVWDVNTG 304
V+G R I++ + +++QCIK GH ++ L++ D +++S S D +R+W++ T
Sbjct: 89 VAGSR-GIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD 147
Query: 305 EMV---NTLIHHCEAVLHLRFS--NGMMVTCSKDRSIAVWDMVSPNEITLRRVLVGHRAA 359
+V + H + VL + +++C D S+ +W I +R++ A
Sbjct: 148 TLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW------RINSKRMM---NAI 198
Query: 360 VNVVDFDEKYIVSASGDRTIKVWNTSSCEF--VRTLNGHKRGIACLQYRDRLVVSGSSDN 417
D++ ++T + + + F T + H+ + C+++ L++S S +N
Sbjct: 199 KESYDYNP--------NKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCEN 250
Query: 418 TIRLW----------DIECGACLRVLEGHEELVRC----IRFDA----KRIVSGAYDGKI 459
I W I+ + G + +C +RF K + G GK+
Sbjct: 251 AIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSTDFWQKMLALGNQVGKL 310
Query: 460 KVWNLVAALDPRAPTTTL 477
VW+L +A TTL
Sbjct: 311 YVWDLEVEDPHKAKCTTL 328
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 55/104 (52%), Gaps = 9/104 (8%)
Query: 370 IVSASGDR-TIKVWNTSSCEFVRTLNGHKRGIACLQYRDR---LVVSGSSDNTIRLWDIE 425
+++ +G R I++ N + + ++ GH I L++ R L++S S D+ +RLW+I+
Sbjct: 86 LLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 145
Query: 426 CGACLRVL---EGHEELVRCIRFD--AKRIVSGAYDGKIKVWNL 464
+ + EGH + V +D ++I+S D +K+W +
Sbjct: 146 TDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 189
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/258 (21%), Positives = 111/258 (43%), Gaps = 46/258 (17%)
Query: 248 VSGLRDNTIKVWDRVSLQCIKVLTGHTGSVLCLQY---DERVIISGSSDSTVRVWDVNTG 304
V+G R I++ + +++QCIK GH ++ L++ D +++S S D +R+W++ T
Sbjct: 89 VAGSR-GIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD 147
Query: 305 EMV---NTLIHHCEAVLHLRFS--NGMMVTCSKDRSIAVWDMVSPNEITLRRVLVGHRAA 359
+V + H + VL + +++C D S+ +W I +R++ A
Sbjct: 148 TLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW------RINSKRMM---NAI 198
Query: 360 VNVVDFDEKYIVSASGDRTIKVWNTSSCEF--VRTLNGHKRGIACLQYRDRLVVSGSSDN 417
D++ ++T + + + F T + H+ + C+++ L++S S +N
Sbjct: 199 KESYDYNP--------NKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCEN 250
Query: 418 TIRLW----------DIECGACLRVLEGHEELVRC--------IRFDAKRIVSGAYDGKI 459
I W I+ + G + +C + F K + G GK+
Sbjct: 251 AIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKL 310
Query: 460 KVWNLVAALDPRAPTTTL 477
VW+L +A TTL
Sbjct: 311 YVWDLEVEDPHKAKCTTL 328
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 55/104 (52%), Gaps = 9/104 (8%)
Query: 370 IVSASGDR-TIKVWNTSSCEFVRTLNGHKRGIACLQYRDR---LVVSGSSDNTIRLWDIE 425
+++ +G R I++ N + + ++ GH I L++ R L++S S D+ +RLW+I+
Sbjct: 86 LLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 145
Query: 426 CGACLRVL---EGHEELVRCIRFD--AKRIVSGAYDGKIKVWNL 464
+ + EGH + V +D ++I+S D +K+W +
Sbjct: 146 TDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 189
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/258 (21%), Positives = 111/258 (43%), Gaps = 46/258 (17%)
Query: 248 VSGLRDNTIKVWDRVSLQCIKVLTGHTGSVLCLQY---DERVIISGSSDSTVRVWDVNTG 304
V+G R I++ + +++QCIK GH ++ L++ D +++S S D +R+W++ T
Sbjct: 85 VAGSR-GIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD 143
Query: 305 EMV---NTLIHHCEAVLHLRFS--NGMMVTCSKDRSIAVWDMVSPNEITLRRVLVGHRAA 359
+V + H + VL + +++C D S+ +W I +R++ A
Sbjct: 144 TLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW------RINSKRMM---NAI 194
Query: 360 VNVVDFDEKYIVSASGDRTIKVWNTSSCEF--VRTLNGHKRGIACLQYRDRLVVSGSSDN 417
D++ ++T + + + F T + H+ + C+++ L++S S +N
Sbjct: 195 KESYDYNP--------NKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCEN 246
Query: 418 TIRLW----------DIECGACLRVLEGHEELVRC--------IRFDAKRIVSGAYDGKI 459
I W I+ + G + +C + F K + G GK+
Sbjct: 247 AIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKL 306
Query: 460 KVWNLVAALDPRAPTTTL 477
VW+L +A TTL
Sbjct: 307 YVWDLEVEDPHKAKCTTL 324
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 55/104 (52%), Gaps = 9/104 (8%)
Query: 370 IVSASGDR-TIKVWNTSSCEFVRTLNGHKRGIACLQYRDR---LVVSGSSDNTIRLWDIE 425
+++ +G R I++ N + + ++ GH I L++ R L++S S D+ +RLW+I+
Sbjct: 82 LLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 141
Query: 426 CGACLRVL---EGHEELVRCIRFD--AKRIVSGAYDGKIKVWNL 464
+ + EGH + V +D ++I+S D +K+W +
Sbjct: 142 TDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 185
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 66/144 (45%), Gaps = 11/144 (7%)
Query: 287 IISGSSDSTVRVWDVNTGEMVNTLIHHCEAVLHLRFS-----NGMMVTCSKDRSIAVWDM 341
+I+ SD + +D +GE + + E V F+ + T D +I VWD+
Sbjct: 222 VITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDV 281
Query: 342 VSP---NEITLRRVLVGHRAAVNVVDFDEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKR 398
+ + TL + +G++ V VV I+S S D T+ + E ++T++GH +
Sbjct: 282 TTSKCVQKWTLDKQQLGNQQ-VGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNK 340
Query: 399 GIACLQYRDRLVVSGSSDNTIRLW 422
GI L ++SGS D I W
Sbjct: 341 GITALTVNP--LISGSYDGRIXEW 362
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 17/120 (14%)
Query: 365 FDEKYIVSASGDRTIKVWN--TSSCEFVRTLNGHKRG---IACLQYRDRLVVSGSSDNTI 419
D + + D TI+VW+ TS C TL+ + G + + + ++S S D T+
Sbjct: 262 LDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTL 321
Query: 420 RLWDIECGACLRVLEGHEELVRCIRFDAKRIVSGAYDGKIKVW----------NLVAALD 469
+++ L+ + GH + + + + ++SG+YDG+I W NL+ +LD
Sbjct: 322 NFYELGHDEVLKTISGHNKGITALTVNP--LISGSYDGRIXEWSSSSXHQDHSNLIVSLD 379
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 60/129 (46%), Gaps = 10/129 (7%)
Query: 218 RMGKFLLQRINCRSENSKGVYCLQY-DDHKIVSGLRDNTIKVWDRVSLQCIKVLT----- 271
+ G+FL + + G++ L + D K + D TI+VWD + +C++ T
Sbjct: 237 KSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQ 296
Query: 272 -GHTGSVLCLQYDERVIISGSSDSTVRVWDVNTGEMVNTLIHHCEAVLHLRFSNGMMVTC 330
G+ + + R IIS S D T+ +++ E++ T+ H + + L + +++
Sbjct: 297 LGNQQVGVVATGNGR-IISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVN--PLISG 353
Query: 331 SKDRSIAVW 339
S D I W
Sbjct: 354 SYDGRIXEW 362
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 119 IVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTI 168
I+S S D T+ + E ++T++GH +GI L ++SGS D I
Sbjct: 312 IISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNP--LISGSYDGRI 359
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 66/144 (45%), Gaps = 11/144 (7%)
Query: 287 IISGSSDSTVRVWDVNTGEMVNTLIHHCEAVLHLRFS-----NGMMVTCSKDRSIAVWDM 341
+I+ SD + +D +GE + + E V F+ + T D +I VWD+
Sbjct: 222 VITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDV 281
Query: 342 VSP---NEITLRRVLVGHRAAVNVVDFDEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKR 398
+ + TL + +G++ V VV I+S S D T+ + E ++T++GH +
Sbjct: 282 TTSKCVQKWTLDKQQLGNQQ-VGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNK 340
Query: 399 GIACLQYRDRLVVSGSSDNTIRLW 422
GI L ++SGS D I W
Sbjct: 341 GITALTVNP--LISGSYDGRIMEW 362
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 17/120 (14%)
Query: 365 FDEKYIVSASGDRTIKVWN--TSSCEFVRTLNGHKRG---IACLQYRDRLVVSGSSDNTI 419
D + + D TI+VW+ TS C TL+ + G + + + ++S S D T+
Sbjct: 262 LDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTL 321
Query: 420 RLWDIECGACLRVLEGHEELVRCIRFDAKRIVSGAYDGKIKVW----------NLVAALD 469
+++ L+ + GH + + + + ++SG+YDG+I W NL+ +LD
Sbjct: 322 NFYELGHDEVLKTISGHNKGITALTVNP--LISGSYDGRIMEWSSSSMHQDHSNLIVSLD 379
Score = 35.4 bits (80), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 60/129 (46%), Gaps = 10/129 (7%)
Query: 218 RMGKFLLQRINCRSENSKGVYCLQY-DDHKIVSGLRDNTIKVWDRVSLQCIKVLT----- 271
+ G+FL + + G++ L + D K + D TI+VWD + +C++ T
Sbjct: 237 KSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQ 296
Query: 272 -GHTGSVLCLQYDERVIISGSSDSTVRVWDVNTGEMVNTLIHHCEAVLHLRFSNGMMVTC 330
G+ + + R IIS S D T+ +++ E++ T+ H + + L + +++
Sbjct: 297 LGNQQVGVVATGNGR-IISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVN--PLISG 353
Query: 331 SKDRSIAVW 339
S D I W
Sbjct: 354 SYDGRIMEW 362
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 119 IVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTI 168
I+S S D T+ + E ++T++GH +GI L ++SGS D I
Sbjct: 312 IISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNP--LISGSYDGRI 359
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 6/114 (5%)
Query: 327 MVTCSKDRSIAVWDMVSPNEITLRRVLVGHRAAVNV-VDFDEKYIVSASGDRTIKVWNTS 385
++ + ++++WD+ +P + A + + D K S D I VW+
Sbjct: 112 LIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLH 171
Query: 386 SCEFVRTLNGHKRGIACLQYRD--RLVVSGSSDNTIRLWDIECGACLRVLEGHE 437
+ VR GH G +C+ + + +G DNT+R WD+ G R L+ H+
Sbjct: 172 NQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG---RQLQQHD 222
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/232 (22%), Positives = 87/232 (37%), Gaps = 52/232 (22%)
Query: 283 DERVIISGSSDSTVRVWDVN--TGEMVNTLIHHCEAVLHLRFSNGMMV--TCSKDRSIAV 338
D +I G ST+ +WD+ T + L A L S V +C D +IAV
Sbjct: 108 DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAV 167
Query: 339 WDMVSPNEITLRRVLVGHRAAVNVVDF--DEKYIVSASGDRTIKVWN------------- 383
WD+ + TL R GH + +D D + + D T++ W+
Sbjct: 168 WDL---HNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFT 224
Query: 384 --------------------TSSCEFVRT-------LNGHKRGIACLQ--YRDRLVVSGS 414
+S+ E + L+ H+ + L+ Y + VS
Sbjct: 225 SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTG 284
Query: 415 SDNTIRLWDIECGACLRVLEGHEELVRC-IRFDAKRIVSGAYDGKIKVWNLV 465
DN + W GA + + ++ C I D K IV+G+ D K V+ ++
Sbjct: 285 KDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/179 (20%), Positives = 71/179 (39%), Gaps = 12/179 (6%)
Query: 253 DNTIKVWDRVSLQCIKVLTGHTGSVLCLQY--DERVIISGSSDSTVRVWDVNTGEMVNTL 310
D I VWD + ++ GHT C+ D + +G D+TVR WD+ G +
Sbjct: 162 DGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH 221
Query: 311 IHHCEAVLHLRF--SNGMMVTCSKDRSIAVWDMVSPNEITLRRVLVGHRAAVNVVDFD-- 366
+ L + + + + ++ V + P++ L H + V + F
Sbjct: 222 -DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHL----HESCVLSLKFAYC 276
Query: 367 EKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIAC-LQYRDRLVVSGSSDNTIRLWDI 424
K+ VS D + W T + ++C + D+ +V+GS D ++++
Sbjct: 277 GKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 77/194 (39%), Gaps = 17/194 (8%)
Query: 115 DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYRD--RLVVSGSSDNTIR--- 169
D K S D I VW+ + VR GH G +C+ + + +G DNT+R
Sbjct: 152 DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWD 211
Query: 170 YRDEFQIVSSSHDDTILIWDFLNYSETPIQXXXXXXXXXXXXXIENNWRMGKFLLQRINC 229
R+ Q+ HD T I+ L Y P + + + K+ L
Sbjct: 212 LREGRQL--QQHDFTSQIFS-LGY--CPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHES 266
Query: 230 RSENSKGVYCLQYDDHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVLC--LQYDERVI 287
+ K YC ++ VS +DN + W R + + SVL + D++ I
Sbjct: 267 CVLSLKFAYCGKW----FVSTGKDNLLNAW-RTPYGASIFQSKESSSVLSCDISVDDKYI 321
Query: 288 ISGSSDSTVRVWDV 301
++GS D V++V
Sbjct: 322 VTGSGDKKATVYEV 335
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 67/158 (42%), Gaps = 14/158 (8%)
Query: 233 NSKGVYCLQY--DDHKIVSGLRDNTIKVWDRVSLQCIKVLTGH--TGSVLCLQY--DERV 286
++ G C+ D K+ +G DNT++ WD L+ + L H T + L Y
Sbjct: 182 HTDGASCIDISNDGTKLWTGGLDNTVRSWD---LREGRQLQQHDFTSQIFSLGYCPTGEW 238
Query: 287 IISGSSDSTVRVWDVNTGEMVNTLIHHCEAVLHLRFS--NGMMVTCSKDRSIAVWDMVSP 344
+ G S V V VN + +H VL L+F+ V+ KD + W +P
Sbjct: 239 LAVGMESSNVEVLHVNKPDKYQLHLHE-SCVLSLKFAYCGKWFVSTGKDNLLNAWR--TP 295
Query: 345 NEITLRRVLVGHRAAVNVVDFDEKYIVSASGDRTIKVW 382
++ + + D+KYIV+ SGD+ V+
Sbjct: 296 YGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVY 333
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 7/114 (6%)
Query: 285 RVIISGSSDSTVRVWDVNTGEMVNTLIHHCEAVLHLRF--SNGMMVTCSKDRSIAVWDMV 342
R I G+++ ++V D N H + L+F S +++ S+D + +W
Sbjct: 107 RRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIW--- 163
Query: 343 SPNEITLRRVLVGHRAAVNVVDFDEK--YIVSASGDRTIKVWNTSSCEFVRTLN 394
S + + R L+GHRA V + ++ ++SAS D TI++W + + T N
Sbjct: 164 SVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFN 217
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 73/171 (42%), Gaps = 29/171 (16%)
Query: 283 DERVIISGSSDSTVRVWDVNTGEMVNTLIHHCEAVLHLRFSNGMMVTCSKDRSIAVWDMV 342
+ ++++ G+S V NT E V + ++ H N ++ SK A + V
Sbjct: 41 EHKIVVLGNSRG-VDAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRADYTAV 99
Query: 343 SPNEITLRRVLVG----------------------HRAAVNVVDF--DEKYIVSASGDRT 378
++ +RR ++G H + + + F + ++S+S D
Sbjct: 100 DTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQ 159
Query: 379 IKVWNTSSCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG 427
+K+W+ RTL GH+ + + R R V+S S D TIRLW ECG
Sbjct: 160 LKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLW--ECG 208
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 247 IVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVLCLQYDERV--IISGSSDSTVRVWDVNTG 304
++S +D +K+W + L GH +V + +R ++S S D T+R+W+ TG
Sbjct: 151 LISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTG 210
Query: 305 EMVNTL 310
++T
Sbjct: 211 TTIHTF 216
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 119 IVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIR 169
++S+S D +K+W+ RTL GH+ + + R R V+S S D TIR
Sbjct: 151 LISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIR 203
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 10/102 (9%)
Query: 246 KIVSGLRDNTIKVWD-RVSLQCIKVLTGHTGSVLCLQY--DERVIISGSSDSTVRVWDVN 302
+ + G + IKV D +LQ ++ H + L++ +IS S D +++W V
Sbjct: 108 RFILGTTEGDIKVLDSNFNLQR-EIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVK 166
Query: 303 TGEMVNTLIHHCEAVLHL----RFSNGMMVTCSKDRSIAVWD 340
G TLI H V + R N +++ S D +I +W+
Sbjct: 167 DGSNPRTLIGHRATVTDIAIIDRGRN--VLSASLDGTIRLWE 206
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 7/114 (6%)
Query: 285 RVIISGSSDSTVRVWDVNTGEMVNTLIHHCEAVLHLRF--SNGMMVTCSKDRSIAVWDMV 342
R I G+++ ++V D N H + L+F S +++ S+D + +W
Sbjct: 110 RRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIW--- 166
Query: 343 SPNEITLRRVLVGHRAAVNVVDFDEK--YIVSASGDRTIKVWNTSSCEFVRTLN 394
S + + R L+GHRA V + ++ ++SAS D TI++W + + T N
Sbjct: 167 SVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFN 220
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 73/171 (42%), Gaps = 29/171 (16%)
Query: 283 DERVIISGSSDSTVRVWDVNTGEMVNTLIHHCEAVLHLRFSNGMMVTCSKDRSIAVWDMV 342
+ ++++ G+S V NT E V + ++ H N ++ SK A + V
Sbjct: 44 EHKIVVLGNSRG-VDAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRADYTAV 102
Query: 343 SPNEITLRRVLVG----------------------HRAAVNVVDF--DEKYIVSASGDRT 378
++ +RR ++G H + + + F + ++S+S D
Sbjct: 103 DTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQ 162
Query: 379 IKVWNTSSCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG 427
+K+W+ RTL GH+ + + R R V+S S D TIRLW ECG
Sbjct: 163 LKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLW--ECG 211
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 247 IVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVLCLQYDERV--IISGSSDSTVRVWDVNTG 304
++S +D +K+W + L GH +V + +R ++S S D T+R+W+ TG
Sbjct: 154 LISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTG 213
Query: 305 EMVNTL 310
++T
Sbjct: 214 TTIHTF 219
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 119 IVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIR 169
++S+S D +K+W+ RTL GH+ + + R R V+S S D TIR
Sbjct: 154 LISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIR 206
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 10/102 (9%)
Query: 246 KIVSGLRDNTIKVWD-RVSLQCIKVLTGHTGSVLCLQY--DERVIISGSSDSTVRVWDVN 302
+ + G + IKV D +LQ ++ H + L++ +IS S D +++W V
Sbjct: 111 RFILGTTEGDIKVLDSNFNLQR-EIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVK 169
Query: 303 TGEMVNTLIHHCEAVLHL----RFSNGMMVTCSKDRSIAVWD 340
G TLI H V + R N +++ S D +I +W+
Sbjct: 170 DGSNPRTLIGHRATVTDIAIIDRGRN--VLSASLDGTIRLWE 209
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 89/222 (40%), Gaps = 42/222 (18%)
Query: 240 LQYDDHKIVSGLRDNTIKVWD--RVSLQCIKVLTGHTGSVLCLQYDE----RVIISGSSD 293
L Y ++ + D TIK+++ + + I LTGH G V + + ++ S S D
Sbjct: 17 LDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD 76
Query: 294 STVRVWDVNTGEMVNTLIH--HCEAVLHLRFS----NGMMVTCSKDRSIAVWDMVSPNEI 347
V +W G +H H +V ++++ +++ S D ++V + N
Sbjct: 77 GKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEF-KENGT 135
Query: 348 TLRRVLVGHRAAVNVVDFDEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYRD 407
T ++ H VN SAS W ++ E NG K
Sbjct: 136 TSPIIIDAHAIGVN----------SAS-------WAPATIEEDGEHNGTKES-------- 170
Query: 408 RLVVSGSSDNTIRLWDIECGACLRV----LEGHEELVRCIRF 445
R V+G +DN +++W A V LEGH + VR + +
Sbjct: 171 RKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAW 212
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 8/77 (10%)
Query: 394 NGHKRGI--ACLQYRDRLVVSGSSDNTIRLWDI--ECGACLRVLEGHEELVRCIRFDAKR 449
N H I A L Y + + + SSD TI+++++ E + L GHE V + + +
Sbjct: 6 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK 65
Query: 450 ----IVSGAYDGKIKVW 462
+ S +YDGK+ +W
Sbjct: 66 FGTILASCSYDGKVLIW 82
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 89/223 (39%), Gaps = 42/223 (18%)
Query: 239 CLQYDDHKIVSGLRDNTIKVWD--RVSLQCIKVLTGHTGSVLCLQYDE----RVIISGSS 292
+ Y ++ + D TIK+++ + + I LTGH G V + + ++ S S
Sbjct: 16 VMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY 75
Query: 293 DSTVRVWDVNTGEMVNTLIH--HCEAVLHLRFS----NGMMVTCSKDRSIAVWDMVSPNE 346
D V +W G +H H +V ++++ M++ S D ++V + N
Sbjct: 76 DGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEF-KENG 134
Query: 347 ITLRRVLVGHRAAVNVVDFDEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYR 406
T ++ H VN SAS W ++ E NG K
Sbjct: 135 TTSPIIIDAHAIGVN----------SAS-------WAPATIEEDGEHNGTKE-------- 169
Query: 407 DRLVVSGSSDNTIRLWDIECGACLRV----LEGHEELVRCIRF 445
R V+G +DN +++W A V LEGH + VR + +
Sbjct: 170 SRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAW 212
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
Query: 389 FVRTLNGHKRGI--ACLQYRDRLVVSGSSDNTIRLWDI--ECGACLRVLEGHEELVRCIR 444
V N H I A + Y + + + SSD TI+++++ E + L GHE V +
Sbjct: 1 MVVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVD 60
Query: 445 FDAKR----IVSGAYDGKIKVW 462
+ + + S +YDGK+ +W
Sbjct: 61 WAHPKFGTILASCSYDGKVMIW 82
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 89/222 (40%), Gaps = 42/222 (18%)
Query: 240 LQYDDHKIVSGLRDNTIKVWD--RVSLQCIKVLTGHTGSVLCLQYDE----RVIISGSSD 293
L Y ++ + D TIK+++ + + I LTGH G V + + ++ S S D
Sbjct: 19 LDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD 78
Query: 294 STVRVWDVNTGEMVNTLIH--HCEAVLHLRFS----NGMMVTCSKDRSIAVWDMVSPNEI 347
V +W G +H H +V ++++ +++ S D ++V + N
Sbjct: 79 GKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEF-KENGT 137
Query: 348 TLRRVLVGHRAAVNVVDFDEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYRD 407
T ++ H VN SAS W ++ E NG K
Sbjct: 138 TSPIIIDAHAIGVN----------SAS-------WAPATIEEDGEHNGTKE--------S 172
Query: 408 RLVVSGSSDNTIRLW----DIECGACLRVLEGHEELVRCIRF 445
R V+G +DN +++W D + LEGH + VR + +
Sbjct: 173 RKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAW 214
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 8/77 (10%)
Query: 394 NGHKRGI--ACLQYRDRLVVSGSSDNTIRLWDI--ECGACLRVLEGHEELVRCIRFDAKR 449
N H I A L Y + + + SSD TI+++++ E + L GHE V + + +
Sbjct: 8 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK 67
Query: 450 ----IVSGAYDGKIKVW 462
+ S +YDGK+ +W
Sbjct: 68 FGTILASCSYDGKVLIW 84
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 77/194 (39%), Gaps = 12/194 (6%)
Query: 277 VLCLQYDERVIISGSSDSTVRVWDVNTGEMVNTLIHHCEAVLHLRFSNG---MMVTCSKD 333
L + D +SG D +V+VWD++ ++ + H V + G + ++C +D
Sbjct: 144 TLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGED 203
Query: 334 RSIAVWDMVSPNEITLRRVLVGHRAAVNVVDFDEKYIVSASGDRT--IKVWNTSSCEFVR 391
I +WD P T +V EK A GD T + + N + + +
Sbjct: 204 GRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQ 263
Query: 392 TLNGHKRGIACLQY---RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--- 445
T H + I L Y + S S D T+ + D + R L H + V + +
Sbjct: 264 TSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLS-HRDFVTGVAWSPL 322
Query: 446 DAKRIVSGAYDGKI 459
D + + +D K+
Sbjct: 323 DHSKFTTVGWDHKV 336
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 25/138 (18%)
Query: 343 SPNEITLRRVLVGHRAAVNVVDFDEKYIVSASGDRTIKVWNTSSCE-------------- 388
+PNE + +V EK I+ AS +++W E
Sbjct: 81 APNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDD 140
Query: 389 FVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDAK 448
V+TL+ G VSG D ++++WD+ A L+ H V C+
Sbjct: 141 IVKTLSVFSDGTQ--------AVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPG 192
Query: 449 R---IVSGAYDGKIKVWN 463
+ +S DG+I +W+
Sbjct: 193 KDTIFLSCGEDGRILLWD 210
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 42/108 (38%), Gaps = 27/108 (25%)
Query: 83 LLSRMCHYQHGHINTYLKPMLQRDFISLLPNF-DEKYIVSASGDRTIKVWNTSSCEFVRT 141
L+++ Y+H D + L F D VS D ++KVW+ S +++
Sbjct: 129 LVNKFAKYEH------------DDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKS 176
Query: 142 LNGHKRGIACLQYRDRLVVSGSSDNTIRYRDEFQIVSSSHDDTILIWD 189
N H + C V + +TI +S D IL+WD
Sbjct: 177 YNAHSSEVNC-------VAACPGKDTI-------FLSCGEDGRILLWD 210
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 89/223 (39%), Gaps = 42/223 (18%)
Query: 239 CLQYDDHKIVSGLRDNTIKVWD--RVSLQCIKVLTGHTGSVLCLQYDE----RVIISGSS 292
L Y ++ + D TIK+++ + + I LTGH G V + + ++ S S
Sbjct: 16 VLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY 75
Query: 293 DSTVRVWDVNTGEMVNTLIH--HCEAVLHLRFS----NGMMVTCSKDRSIAVWDMVSPNE 346
D V +W G +H H +V ++++ +++ S D ++V + N
Sbjct: 76 DGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEF-KENG 134
Query: 347 ITLRRVLVGHRAAVNVVDFDEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYR 406
T ++ H VN SAS W ++ E NG K
Sbjct: 135 TTSPIIIDAHAIGVN----------SAS-------WAPATIEEDGEHNGTKE-------- 169
Query: 407 DRLVVSGSSDNTIRLWDIECGACLRV----LEGHEELVRCIRF 445
R V+G +DN +++W A V LEGH + VR + +
Sbjct: 170 SRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAW 212
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
Query: 389 FVRTLNGHKRGI--ACLQYRDRLVVSGSSDNTIRLWDI--ECGACLRVLEGHEELVRCIR 444
V N H I A L Y + + + SSD TI+++++ E + L GHE V +
Sbjct: 1 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVD 60
Query: 445 FDAKR----IVSGAYDGKIKVW 462
+ + + S +YDGK+ +W
Sbjct: 61 WAHPKFGTILASCSYDGKVLIW 82
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 66/141 (46%), Gaps = 12/141 (8%)
Query: 224 LQRINCRSENSKGVYCLQYD-----DHKIVSGLRDNTIKVWD-RVSLQCI-KVLTGHTGS 276
++ I S + CL + + +++G N ++ W+ + S Q I K HTG
Sbjct: 29 MKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGP 88
Query: 277 VL--CLQYDERVIISGSSDSTVRVWDVNTGEMVNTLIHHC--EAVLHLRFSN-GMMVTCS 331
VL C D + + S D T ++WD+++ + + H + + ++ N ++T S
Sbjct: 89 VLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGS 148
Query: 332 KDRSIAVWDMVSPNEITLRRV 352
D+++ WD S N + + ++
Sbjct: 149 WDKTLKFWDTRSSNPMMVLQL 169
Score = 35.8 bits (81), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 17/123 (13%)
Query: 239 CLQYDDHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVLCLQY----DERVIISGSSDS 294
C D K+ + D T K+WD S Q I++ H V + + + +++GS D
Sbjct: 93 CWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQ-HDAPVKTIHWIKAPNYSCVMTGSWDK 151
Query: 295 TVRVWDVNTGE--MVNTLIH--HCEAVLHLRFSNGMMVTCSKDRSIAVWDMVS-PNEITL 349
T++ WD + MV L +C V++ M V + +R + V+ + + P+E
Sbjct: 152 TLKFWDTRSSNPMMVLQLPERCYCADVIYP-----MAVVATAERGLIVYQLENQPSE--F 204
Query: 350 RRV 352
RR+
Sbjct: 205 RRI 207
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Query: 366 DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQY----RDRLVVSGSSDNTIRL 421
D + +AS D+T K+W+ SS + ++ + H + + + V++GS D T++
Sbjct: 97 DGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKF 155
Query: 422 WDIECGACLRVLE 434
WD + VL+
Sbjct: 156 WDTRSSNPMMVLQ 168
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 82/189 (43%), Gaps = 38/189 (20%)
Query: 291 SSDSTVRVWDVN--TGEMVNTLIHHCEAVL-----HLRFSNGMMVTCSKDRSIAVWDMVS 343
SSD T+++++V T ++++TL H V H +F ++ +CS D + +W +
Sbjct: 28 SSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGT-ILASCSYDGKVXIWKEEN 86
Query: 344 P--NEITLRRVLVGHRAAVNVVDF-DEKY-----IVSASGDRTIKVWNTSSCEFVRTLNG 395
++I + V H A+VN V + +Y + S+ G ++ + + ++
Sbjct: 87 GRWSQIAVHAV---HSASVNSVQWAPHEYGPXLLVASSDGKVSVVEFKENGTTSPIIIDA 143
Query: 396 HKRGIACLQY---------------RDRLVVSGSSDNTIRLWDIECGACLRV----LEGH 436
H G+ + R V+G +DN +++W A V LEGH
Sbjct: 144 HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH 203
Query: 437 EELVRCIRF 445
+ VR + +
Sbjct: 204 SDWVRDVAW 212
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Query: 394 NGHKRGI--ACLQYRDRLVVSGSSDNTIRLWDIE--CGACLRVLEGHEELVRCIRFDAKR 449
N H I A Y + + SSD TI+++++E + L GHE V + + +
Sbjct: 6 NAHNEXIHDAVXDYYGKRXATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK 65
Query: 450 ----IVSGAYDGKIKVW 462
+ S +YDGK+ +W
Sbjct: 66 FGTILASCSYDGKVXIW 82
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 80/181 (44%), Gaps = 23/181 (12%)
Query: 267 IKVLTGHTGSVLCLQY---DERVIISGSSDSTVRVWDVNTG-------EMVNTLIHHCEA 316
+ ++ GHT VL + + ++ VI SGS D TV VW++ G E V TL H +
Sbjct: 74 VPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKR 133
Query: 317 VLHLRF---SNGMMVTCSKDRSIAVWDMVSPNEITLRRVLVGHRAAVNVVDF--DEKYIV 371
V + + + ++++ D I VWD+ + + V H + VD+ D I
Sbjct: 134 VGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDV-HPDTIYSVDWSRDGALIC 192
Query: 372 SASGDRTIKVW----NTSSCEFVRTLNGHKRGIACLQYRDRLVVSG---SSDNTIRLWDI 424
++ D+ ++V T E R G + A +++ +G S+ + LWD
Sbjct: 193 TSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDT 252
Query: 425 E 425
+
Sbjct: 253 K 253
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 13/95 (13%)
Query: 352 VLVGHRAAVNVVDF---DEKYIVSASGDRTIKVWNTSSC-------EFVRTLNGHKRGIA 401
++ GH A V + + ++ I S S D T+ VW E V TL GH + +
Sbjct: 76 LVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVG 135
Query: 402 CLQYR---DRLVVSGSSDNTIRLWDIECGACLRVL 433
+ + +++S DN I +WD+ GA + L
Sbjct: 136 IVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTL 170
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 10/75 (13%)
Query: 400 IACLQYRDRLVVSGSSDNTIRLWDIECGAC---LR----VLEGHEELVRCIRFDAKR--- 449
IA + D ++ SGS D T+ +W+I G LR LEGH + V + +
Sbjct: 87 IAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNV 146
Query: 450 IVSGAYDGKIKVWNL 464
++S D I VW++
Sbjct: 147 LLSAGXDNVILVWDV 161
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 14/85 (16%)
Query: 260 DRVSLQCIKVLTGHTGSVLCLQYDERVIISGSSDSTVRVWDVNTGEMVNTLIHHCEAVL- 318
DRV L C+ + V+ +G D + +WDV G M +L+ EA +
Sbjct: 235 DRVPLHCVDRHPNQ----------QHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMW 284
Query: 319 --HLRFSNG-MMVTCSKDRSIAVWD 340
H SN + TCS+D S+ WD
Sbjct: 285 EVHFHPSNPEHLFTCSEDGSLWHWD 309
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 80/181 (44%), Gaps = 23/181 (12%)
Query: 267 IKVLTGHTGSVLCLQY---DERVIISGSSDSTVRVWDVNTG-------EMVNTLIHHCEA 316
+ ++ GHT VL + + ++ VI SGS D TV VW++ G E V TL H +
Sbjct: 74 VPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKR 133
Query: 317 VLHLRF---SNGMMVTCSKDRSIAVWDMVSPNEITLRRVLVGHRAAVNVVDF--DEKYIV 371
V + + + ++++ D I VWD+ + + V H + VD+ D I
Sbjct: 134 VGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDV-HPDTIYSVDWSRDGALIC 192
Query: 372 SASGDRTIKVW----NTSSCEFVRTLNGHKRGIACLQYRDRLVVSG---SSDNTIRLWDI 424
++ D+ ++V T E R G + A +++ +G S+ + LWD
Sbjct: 193 TSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDT 252
Query: 425 E 425
+
Sbjct: 253 K 253
Score = 35.8 bits (81), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 57/127 (44%), Gaps = 17/127 (13%)
Query: 352 VLVGHRAAVNVVDF---DEKYIVSASGDRTIKVWNTSSC-------EFVRTLNGHKRGIA 401
++ GH A V + + ++ I S S D T+ VW E V TL GH + +
Sbjct: 76 LVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVG 135
Query: 402 CLQYR---DRLVVSGSSDNTIRLWDIECGACLRVL--EGHEELVRCIRF--DAKRIVSGA 454
+ + +++S DN I +WD+ GA + L + H + + + + D I +
Sbjct: 136 IVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSC 195
Query: 455 YDGKIKV 461
D +++V
Sbjct: 196 RDKRVRV 202
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 10/75 (13%)
Query: 400 IACLQYRDRLVVSGSSDNTIRLWDIECGACLR-------VLEGHEELVRCIRFDAKR--- 449
IA + D ++ SGS D T+ +W+I G + LEGH + V + +
Sbjct: 87 IAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNV 146
Query: 450 IVSGAYDGKIKVWNL 464
++S D I VW++
Sbjct: 147 LLSAGCDNVILVWDV 161
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 69/181 (38%), Gaps = 17/181 (9%)
Query: 284 ERVIISGSSDSTVRVWDVNTGEMVNTLI--HHCE-------AVLHLRFSNGMMVTCSKDR 334
ER I+ S V +W+++ E TLI C+ + + + S V+ SKD
Sbjct: 93 ERGILVASDSGAVELWELDENE---TLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDI 149
Query: 335 SIAVWDMVSPNEITLRRVLVGHRAAVNVVDFDEKYIVSASGDRTIKVWNTSSCEFVRTLN 394
I VWD+ ++ R V + +S S D I +W+T + +
Sbjct: 150 CIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIG 209
Query: 395 GHKRG-----IACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDAKR 449
G +A + + V G + T+ L D + +C+ H + V + F
Sbjct: 210 CSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHS 269
Query: 450 I 450
+
Sbjct: 270 V 270
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 246 KIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVLCLQ---YDERVIISGSSDSTVRVWD 300
+ VSG +D IKVWD + H V C+ + + V +S S D+ + +WD
Sbjct: 141 QAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWD 198
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 15/101 (14%)
Query: 76 QIDFVENLL-SRMCHYQHGHINTYLKPMLQRDFISLLPNFDEKYIVSASGDRTIKVWNTS 134
++D E L+ S+ C Y+H I + +S+L + + VS S D IKVW+ +
Sbjct: 109 ELDENETLIVSKFCKYEHDDIVST---------VSVLSSGTQA--VSGSKDICIKVWDLA 157
Query: 135 SCEFVRTLNGHKRGIACLQ---YRDRLVVSGSSDNTIRYRD 172
+ + H + C+ ++D + +S S DN I D
Sbjct: 158 QQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWD 198
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 35.0 bits (79), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 10/79 (12%)
Query: 355 GHRAAVN--VVDFDEKYIVSASGDRTIKVW----NTSSCEFVRTLNGHKRGIACLQYRD- 407
GH V+ V DF +++ + S D+ IKV+ +TS+ E + H I + +
Sbjct: 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASP 68
Query: 408 ---RLVVSGSSDNTIRLWD 423
R++ S S D T++LW+
Sbjct: 69 EYGRIIASASYDKTVKLWE 87
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 35.0 bits (79), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 10/79 (12%)
Query: 355 GHRAAVN--VVDFDEKYIVSASGDRTIKVW----NTSSCEFVRTLNGHKRGIACLQYRD- 407
GH V+ V DF +++ + S D+ IKV+ +TS+ E + H I + +
Sbjct: 7 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASP 66
Query: 408 ---RLVVSGSSDNTIRLWD 423
R++ S S D T++LW+
Sbjct: 67 EYGRIIASASYDKTVKLWE 85
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 10/79 (12%)
Query: 355 GHRAAVN--VVDFDEKYIVSASGDRTIKVW----NTSSCEFVRTLNGHKRGIACLQYRD- 407
GH V+ V DF +++ + S D+ IKV+ +TS+ E + H I + +
Sbjct: 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASP 68
Query: 408 ---RLVVSGSSDNTIRLWD 423
R++ S S D T++LW+
Sbjct: 69 EYGRIIASASYDKTVKLWE 87
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 11/83 (13%)
Query: 399 GIACLQYRDRLVVSGSSDNTIRLWDIECGAC-LRVLEGHEELVRCIRFD--------AKR 449
G LQ R + +G + +W++E + ++GH+E++ I A
Sbjct: 74 GATSLQ--QRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPE 131
Query: 450 IVSGAYDGKIKVWNLVAALDPRA 472
IV+G+ DG +KVW+ DP A
Sbjct: 132 IVTGSRDGTVKVWDPRQKDDPVA 154
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 58/129 (44%), Gaps = 14/129 (10%)
Query: 306 MVNTLIHHCEAVLH---LRFSNGMMVTCSKDRSIAVWDMVSPNEITLRRVLVGHRAAVNV 362
++NT+ E ++H + + + TCS DRS+ ++D+ + +I + L GH V
Sbjct: 4 VINTVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIAD-LRGHEGPVWQ 62
Query: 363 VDFDE----KYIVSASGDRTIKVWNTSSCEFVRTLN--GHKRGI--ACLQYRDR--LVVS 412
V + + S S DR + +W + + ++ GH + C D ++
Sbjct: 63 VAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILAC 122
Query: 413 GSSDNTIRL 421
GSSD I L
Sbjct: 123 GSSDGAISL 131
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 272 GHTGSVLCLQYDE--RVIISGSSDSTVRVWDVNTGEMVNTLIHHCEAV 317
H+ V+ L +++ + S D +R WDV T E + TL HC+ +
Sbjct: 289 AHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDI 336
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 272 GHTGSVLCLQYDE--RVIISGSSDSTVRVWDVNTGEMVNTLIHHCEAV 317
H+ V+ L +++ + S D +R WDV T E + TL HC+ +
Sbjct: 299 AHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDI 346
>pdb|1A71|A Chain A, Ternary Complex Of An Active Site Double Mutant Of Horse
Liver Alcohol Dehydrogenase, Phe93>trp, Val203>ala With
Nad And Trifluoroethanol
pdb|1A71|B Chain B, Ternary Complex Of An Active Site Double Mutant Of Horse
Liver Alcohol Dehydrogenase, Phe93>trp, Val203>ala With
Nad And Trifluoroethanol
pdb|1A72|A Chain A, An Active-Site Double Mutant (Phe93->trp, Val203->ala) Of
Horse Liver Alcohol Dehydrogenase In Complex With The
Isosteric Nad Analog Cpad
Length = 374
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 31/81 (38%), Gaps = 2/81 (2%)
Query: 341 MVSPNEITLRRVLVGHRAAVNVVDFDEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGI 400
+VS +T V+ GH AA V E GD+ I +W T C R H G
Sbjct: 52 VVSGTLVTPLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLW-TPQCGKCRVCK-HPEGN 109
Query: 401 ACLQYRDRLVVSGSSDNTIRL 421
CL+ + D T R
Sbjct: 110 FCLKNDLSMPRGTMQDGTSRF 130
>pdb|1AXE|A Chain A, Crystal Structure Of The Active-Site Mutant Phe93->trp Of
Horse Liver Alcohol Dehydrogenase In Complex With Nad
And Inhibitor Trifluoroethanol
pdb|1AXE|B Chain B, Crystal Structure Of The Active-Site Mutant Phe93->trp Of
Horse Liver Alcohol Dehydrogenase In Complex With Nad
And Inhibitor Trifluoroethanol
Length = 374
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 31/81 (38%), Gaps = 2/81 (2%)
Query: 341 MVSPNEITLRRVLVGHRAAVNVVDFDEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGI 400
+VS +T V+ GH AA V E GD+ I +W T C R H G
Sbjct: 52 VVSGTLVTPLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLW-TPQCGKCRVCK-HPEGN 109
Query: 401 ACLQYRDRLVVSGSSDNTIRL 421
CL+ + D T R
Sbjct: 110 FCLKNDLSMPRGTMQDGTSRF 130
>pdb|3GM8|A Chain A, Crystal Structure Of A Beta-glycosidase From Bacteroides
Vulgatus
Length = 801
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 67 YFDKWSEQDQIDFVENLLSR--MCHYQHGHINTYLKPMLQRDFISLLPNFDEKYIVSASG 124
YFD+W ++D DF++ + + + G+ T P +Q + +SL D V+ G
Sbjct: 366 YFDEWWQKDMTDFIKRDRNHPSIIMWSIGNEVTGATPEIQHNLVSLFHQLDPDRPVTQGG 425
>pdb|2VPJ|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl12
Length = 301
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 13/85 (15%)
Query: 342 VSPNEITLRRVLVGHRAAVNVVDFDEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIA 401
+ NE+ L V+ G + + +D EKY D + W+ F+ ++ +R +A
Sbjct: 11 LGANEVLL--VVGGFGSQQSPIDVVEKY------DPKTQEWS-----FLPSITRKRRYVA 57
Query: 402 CLQYRDRLVVSGSSDNTIRLWDIEC 426
+ DR+ V G D RL +EC
Sbjct: 58 SVSLHDRIYVIGGYDGRSRLSSVEC 82
>pdb|2DVZ|A Chain A, Structure Of A Periplasmic Transporter
Length = 314
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Query: 28 TISVSSASPQLPPMTILYDPNRKKEPAPQFASEKEMCFKYFDKWSEQDQIDFVENLLSRM 87
T+S + +P P + YDP + +P FA+ + K+ +D F+E L
Sbjct: 83 TVSTXAVNPACRPKDLPYDPIKDFQPVTNFANTANVV-AVNPKFPAKDFKGFLEELKKNP 141
Query: 88 CHYQHGHINT 97
Y +G T
Sbjct: 142 GKYSYGSSGT 151
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,552,309
Number of Sequences: 62578
Number of extensions: 574087
Number of successful extensions: 3364
Number of sequences better than 100.0: 103
Number of HSP's better than 100.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 1399
Number of HSP's gapped (non-prelim): 747
length of query: 486
length of database: 14,973,337
effective HSP length: 103
effective length of query: 383
effective length of database: 8,527,803
effective search space: 3266148549
effective search space used: 3266148549
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)