RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9182
(486 letters)
>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic
proteins that cover a wide variety of functions
including adaptor/regulatory modules in signal
transduction, pre-mRNA processing and cytoskeleton
assembly; typically contains a GH dipeptide 11-24
residues from its N-terminus and the WD dipeptide at its
C-terminus and is 40 residues long, hence the name WD40;
between GH and WD lies a conserved core; serves as a
stable propeller-like platform to which proteins can
bind either stably or reversibly; forms a propeller-like
structure with several blades where each blade is
composed of a four-stranded anti-parallel b-sheet;
instances with few detectable copies are hypothesized to
form larger structures by dimerization; each WD40
sequence repeat forms the first three strands of one
blade and the last strand in the next blade; the last
C-terminal WD40 repeat completes the blade structure of
the first WD40 repeat to create the closed ring
propeller-structure; residues on the top and bottom
surface of the propeller are proposed to coordinate
interactions with other proteins and/or small ligands; 7
copies of the repeat are present in this alignment.
Length = 289
Score = 220 bits (562), Expect = 2e-68
Identities = 90/243 (37%), Positives = 133/243 (54%), Gaps = 15/243 (6%)
Query: 234 SKGVYCLQYDDHK--IVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVLCLQY--DERVIIS 289
+ GV C+ + + +G D TIKVWD + + ++ L GHTG V + D + S
Sbjct: 9 TGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLAS 68
Query: 290 GSSDSTVRVWDVNTGEMVNTLIHHCEAVLHLRFS--NGMMVTCSKDRSIAVWDMVSPNEI 347
GSSD T+R+WD+ TGE V TL H V + FS ++ + S+D++I VWD+ + +
Sbjct: 69 GSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCL 128
Query: 348 TLRRVLVGHRAAVNVVDF--DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQY 405
T L GH VN V F D ++ S+S D TIK+W+ + + V TL GH + + +
Sbjct: 129 T---TLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAF 185
Query: 406 RD--RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDAKR--IVSGAYDGKIKV 461
++S SSD TI+LWD+ G CL L GHE V + F + SG+ DG I+V
Sbjct: 186 SPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRV 245
Query: 462 WNL 464
W+L
Sbjct: 246 WDL 248
Score = 212 bits (541), Expect = 3e-65
Identities = 104/337 (30%), Positives = 165/337 (48%), Gaps = 61/337 (18%)
Query: 139 VRTLNGHKRGIACLQYRD--RLVVSGSSDNTIRYRDEFQIVSSSHDDTILIWDFLNYSET 196
RTL GH G+ C+ + +L+ +GS D TI+ +WD L E
Sbjct: 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIK-----------------VWD-LETGEL 43
Query: 197 PIQGGGGGGPPPSGPSIENNWRMGKFLLQRINCRSENSKGVYCLQYDDHKIVSGLRDNTI 256
G GP ++ + + D + SG D TI
Sbjct: 44 LRTLKGHTGP-----------------VRDVAASA-----------DGTYLASGSSDKTI 75
Query: 257 KVWDRVSLQCIKVLTGHTGSVLCLQY--DERVIISGSSDSTVRVWDVNTGEMVNTLIHHC 314
++WD + +C++ LTGHT V + + D R++ S S D T++VWDV TG+ + TL H
Sbjct: 76 RLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHT 135
Query: 315 EAVLHLRFS--NGMMVTCSKDRSIAVWDMVSPNEITLRRVLVGHRAAVNVVDF--DEKYI 370
+ V + FS + + S+D +I +WD+ + L GH VN V F D + +
Sbjct: 136 DWVNSVAFSPDGTFVASSSQDGTIKLWDLRT---GKCVATLTGHTGEVNSVAFSPDGEKL 192
Query: 371 VSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGA 428
+S+S D TIK+W+ S+ + + TL GH+ G+ + + L+ SGS D TIR+WD+ G
Sbjct: 193 LSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGE 252
Query: 429 CLRVLEGHEELVRCIRF--DAKRIVSGAYDGKIKVWN 463
C++ L GH V + + D KR+ SG+ DG I++W+
Sbjct: 253 CVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
Score = 179 bits (457), Expect = 6e-53
Identities = 72/209 (34%), Positives = 117/209 (55%), Gaps = 13/209 (6%)
Query: 266 CIKVLTGHTGSVLCLQY--DERVIISGSSDSTVRVWDVNTGEMVNTLIHHCEAVLHLRFS 323
+ L GHTG V C+ + D +++ +GS D T++VWD+ TGE++ TL H V + S
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60
Query: 324 --NGMMVTCSKDRSIAVWDMVSPNEITLRRVLVGHRAAVNVVDF--DEKYIVSASGDRTI 379
+ + S D++I +WD+ + + R L GH + V+ V F D + + S+S D+TI
Sbjct: 61 ADGTYLASGSSDKTIRLWDLETGECV---RTLTGHTSYVSSVAFSPDGRILSSSSRDKTI 117
Query: 380 KVWNTSSCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHE 437
KVW+ + + + TL GH + + + V S S D TI+LWD+ G C+ L GH
Sbjct: 118 KVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHT 177
Query: 438 ELVRCIRF--DAKRIVSGAYDGKIKVWNL 464
V + F D ++++S + DG IK+W+L
Sbjct: 178 GEVNSVAFSPDGEKLLSSSSDGTIKLWDL 206
Score = 131 bits (332), Expect = 6e-35
Identities = 65/232 (28%), Positives = 102/232 (43%), Gaps = 52/232 (22%)
Query: 115 DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRYRDEF 174
D + + S+S D+TIKVW+ + + + TL GH + + + S D T
Sbjct: 104 DGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAF--------SPDGTF------ 149
Query: 175 QIVSSSHDDTILIWDFLNYSETPIQGGGGGGPPPSGPSIENNWRMGKFLLQRINCRSENS 234
+ SSS D TI +WD + L + ++
Sbjct: 150 -VASSSQDGTIKLWDL------------------------RTGKCVATL-------TGHT 177
Query: 235 KGVYCLQY--DDHKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVLCLQY--DERVIISG 290
V + + D K++S D TIK+WD + +C+ L GH V + + D ++ SG
Sbjct: 178 GEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASG 237
Query: 291 SSDSTVRVWDVNTGEMVNTLIHHCEAVLHLRFSN--GMMVTCSKDRSIAVWD 340
S D T+RVWD+ TGE V TL H +V L +S + + S D +I +WD
Sbjct: 238 SEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
Score = 113 bits (286), Expect = 2e-28
Identities = 54/196 (27%), Positives = 85/196 (43%), Gaps = 50/196 (25%)
Query: 109 SLLPNFDEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTI 168
S+ + D ++ S+S D TIK+W+ + + V TL GH + + +
Sbjct: 140 SVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSP------------ 187
Query: 169 RYRDEFQIVSSSHDDTILIWDFLNYSETPIQGGGGGGPPPSGPSIENNWRMGKFLLQRIN 228
D +++SSS D TI +WD GK L
Sbjct: 188 ---DGEKLLSSSSDGTIKLWDL---------------------------STGKCLGT--- 214
Query: 229 CRSENSKGVYCLQYDDHK--IVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVLCLQY--DE 284
R GV + + + SG D TI+VWD + +C++ L+GHT SV L + D
Sbjct: 215 LRGHE-NGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDG 273
Query: 285 RVIISGSSDSTVRVWD 300
+ + SGS+D T+R+WD
Sbjct: 274 KRLASGSADGTIRIWD 289
Score = 56.2 bits (136), Expect = 8e-09
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 107 FISLLPNFDEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYRD--RLVVSGSS 164
S+ + D + S S D TI+VW+ + E V+TL+GH + L + + + SGS+
Sbjct: 222 VNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSA 281
Query: 165 DNTIR 169
D TIR
Sbjct: 282 DGTIR 286
>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction
only].
Length = 466
Score = 137 bits (344), Expect = 2e-35
Identities = 96/339 (28%), Positives = 154/339 (45%), Gaps = 27/339 (7%)
Query: 105 RDFISLLPNFDEKYIVSASGDRTIKVWNTSSC-EFVRTLNGHKRGIACLQYR---DRLVV 160
P+ + + S+S D T+K+W+ S+ + +RTL GH + L + L
Sbjct: 113 SKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLAS 172
Query: 161 SGSSDNTIRYRD----EFQIVSSSHDDTILIWDFLNYSETPIQGGGGGGPPPSGPSIENN 216
S D TI+ D + + H D + F I G G +I
Sbjct: 173 GSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDG------TIRL- 225
Query: 217 WRMGKFLLQRINCRSENSKGVYCLQYDDHKIVSGLRDNTIKVWD-RVSLQCIKVLTGHTG 275
W + L R + V D + SG D TI++WD R S ++ L+GH+
Sbjct: 226 WDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSS 285
Query: 276 SVLCLQY--DERVIISGSSDSTVRVWDVNTGE--MVNTLIHHCEAVLHLRFS---NGMMV 328
SVL + + D +++ SGSSD TVR+WD+ TG+ TL H V L FS + ++
Sbjct: 286 SVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVS 345
Query: 329 TCSKDRSIAVWDMVSPNEITLRRVLVGHRAAVNVVDFDEKYIVSASGDRTIKVWNTSSCE 388
S D +I +WD+ + + + D + + S S D T+++W+ S+
Sbjct: 346 GGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVS--FSPDGRVVSSGSTDGTVRLWDLSTGS 403
Query: 389 FVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIE 425
+R L+GH + L + + + SGSSDNTIRLWD++
Sbjct: 404 LLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLK 442
Score = 136 bits (343), Expect = 3e-35
Identities = 101/414 (24%), Positives = 179/414 (43%), Gaps = 56/414 (13%)
Query: 66 KYFDKWSEQDQIDFVENLLSRMCHYQHGHINTYLKPMLQRDFISLLPNFDEKYIVSASGD 125
+ + L +++ L + S+ + D + ++S S D
Sbjct: 27 SLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAFSPDGELLLSGSSD 86
Query: 126 RTIKVWN-TSSCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRYRDEFQIVSSSHDDT 184
TIK+W+ + + +++L G + S ++ + + SSS D T
Sbjct: 87 GTIKLWDLDNGEKLIKSLEGLHDS----SVSKLALSSPDGNSIL-------LASSSLDGT 135
Query: 185 ILIWDFLNYSETPIQGGGGGGPPPSGPSIENNWRMGKFLLQRINCRSENSKGVYCLQYDD 244
+ +WD + L++ + SE+ +
Sbjct: 136 VKLWDLSTPGK---------------------------LIRTLEGHSESVTSLAFSPDGK 168
Query: 245 HKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVLCLQY---DERVIISGSSDSTVRVWDV 301
D TIK+WD + + + L GHT V L + +I SGSSD T+R+WD+
Sbjct: 169 LLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDL 228
Query: 302 NTGEMVNTLI--HHCEAVLHLRFSNGMMVTCSKDRSIAVWDMVSPNEITLRRVLVGHRAA 359
+TG+++ + + H V ++ + S D +I +WD+ S + + R L GH ++
Sbjct: 229 STGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLL--RTLSGHSSS 286
Query: 360 VNVVDF--DEKYIVSASGDRTIKVWNTSSCEFV--RTLNGHKRGIACLQYR---DRLVVS 412
V V F D K + S S D T+++W+ + + + TL GH+ ++ L + LV
Sbjct: 287 VLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSG 346
Query: 413 GSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DAKRIVSGAYDGKIKVWNL 464
GS D TIRLWD+ G L+ LEGH V + F D + + SG+ DG +++W+L
Sbjct: 347 GSDDGTIRLWDLRTGKPLKTLEGHSN-VLSVSFSPDGRVVSSGSTDGTVRLWDL 399
Score = 107 bits (267), Expect = 4e-25
Identities = 85/300 (28%), Positives = 139/300 (46%), Gaps = 34/300 (11%)
Query: 115 DEKYIVSASG-DRTIKVWNTSSCEFVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRY 170
D K + S S D TIK+W+ + + + TL GH ++ L + L+ SGSSD TIR
Sbjct: 166 DGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRL 225
Query: 171 RD-----EFQIVSSSHDDTILIWDFLNYSETPIQGGGGGGPPPSGPSIENNWRMGKFLLQ 225
D + S H D++ + F G G +I W + +
Sbjct: 226 WDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDG-------TIRL-WDL-RSSSS 275
Query: 226 RINCRSENSKGVYCLQY--DDHKIVSGLRDNTIKVWDRVSLQCIKVLT--GHTGSVLCLQ 281
+ S +S V + + D + SG D T+++WD + + + LT GH G V L
Sbjct: 276 LLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLS 335
Query: 282 Y---DERVIISGSSDSTVRVWDVNTGEMVNTLIHHCEAVLHLRFSNG--MMVTCSKDRSI 336
+ ++ GS D T+R+WD+ TG+ + TL H VL + FS ++ + S D ++
Sbjct: 336 FSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVSFSPDGRVVSSGSTDGTV 394
Query: 337 AVWDMVSPNEITLRRVLVGHRAAVNVVDF--DEKYIVSASGDRTIKVWNTSSCEFVRTLN 394
+WD + +L R L GH + V +DF D K + S S D TI++W+ + + +
Sbjct: 395 RLWD---LSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSFS 451
>gnl|CDD|152560 pfam12125, Beta-TrCP_D, D domain of beta-TrCP. This domain is
found in eukaryotes, and is approximately 40 amino acids
in length. It is found associated with pfam00646,
pfam00400. The protein that contains this domain
functions as a ubiquitin ligase. Ubiquitination is
required to direct proteins towards the proteasome for
degradation. This protein is part of the WD40 class of F
box proteins. The D domain of these F box proteins is
involved in mediating the dimerisation of the protein.
Dimerisation is necessary to polyubiquitinate substrates
so this D domain is vital in directing substrates
towards the proteasome for degradation.
Length = 40
Score = 91.4 bits (227), Expect = 4e-23
Identities = 32/40 (80%), Positives = 35/40 (87%)
Query: 65 FKYFDKWSEQDQIDFVENLLSRMCHYQHGHINTYLKPMLQ 104
KYF KWSE DQ+DFVE+LLSRMCHYQHG IN +LKPMLQ
Sbjct: 1 VKYFTKWSESDQVDFVEHLLSRMCHYQHGQINAFLKPMLQ 40
>gnl|CDD|198096 smart01028, Beta-TrCP_D, D domain of beta-TrCP. This domain is
found in eukaryotes, and is approximately 40 amino acids
in length. It is found associated with F-box domain, WD
domain. The protein that contains this domain functions
as a ubiquitin ligase. Ubiquitination is required to
direct proteins towards the proteasome for degradation.
This protein is part of the WD40 class of F box
proteins. The D domain of these F box proteins is
involved in mediating the dimerisation of the protein.
Dimerisation is necessary to polyubiquitinate substrates
so this D domain is vital in directing substrates
towards the proteasome for degradation.
Length = 40
Score = 89.9 bits (223), Expect = 1e-22
Identities = 33/40 (82%), Positives = 38/40 (95%)
Query: 65 FKYFDKWSEQDQIDFVENLLSRMCHYQHGHINTYLKPMLQ 104
KYF+KWSE DQ+DFVE+L+SRMCHYQHGHIN+YLKPMLQ
Sbjct: 1 VKYFEKWSESDQVDFVEHLISRMCHYQHGHINSYLKPMLQ 40
>gnl|CDD|197651 smart00320, WD40, WD40 repeats. Note that these repeats are
permuted with respect to the structural repeats (blades)
of the beta propeller domain.
Length = 40
Score = 48.1 bits (115), Expect = 7e-08
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 263 SLQCIKVLTGHTGSVLCLQY--DERVIISGSSDSTVRVWD 300
S + +K L GHTG V + + D + + SGS D T+++WD
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 43.5 bits (103), Expect = 3e-06
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 427 GACLRVLEGHEELVRCIRF--DAKRIVSGAYDGKIKVWN 463
G L+ L+GH V + F D K + SG+ DG IK+W+
Sbjct: 2 GELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 41.5 bits (98), Expect = 2e-05
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 386 SCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWD 423
S E ++TL GH + + + + + SGS D TI+LWD
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 41.5 bits (98), Expect = 2e-05
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 348 TLRRVLVGHRAAVNVVDF--DEKYIVSASGDRTIKVWN 383
L + L GH V V F D KY+ S S D TIK+W+
Sbjct: 3 ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 37.7 bits (88), Expect = 3e-04
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 303 TGEMVNTLIHHCEAVLHLRFS--NGMMVTCSKDRSIAVWD 340
+GE++ TL H V + FS + + S D +I +WD
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 31.5 bits (72), Expect = 0.053
Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 15/55 (27%)
Query: 135 SCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRYRDEFQIVSSSHDDTILIWD 189
S E ++TL GH + + + S D + S S D TI +WD
Sbjct: 1 SGELLKTLKGHTGPVTSVAF--------SPDGKY-------LASGSDDGTIKLWD 40
Score = 31.1 bits (71), Expect = 0.088
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 234 SKGVYCLQY--DDHKIVSGLRDNTIKVWD 260
+ V + + D + SG D TIK+WD
Sbjct: 12 TGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 30.4 bits (69), Expect = 0.13
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 115 DEKYIVSASGDRTIKVWN 132
D KY+ S S D TIK+W+
Sbjct: 23 DGKYLASGSDDGTIKLWD 40
>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat.
Length = 39
Score = 47.3 bits (113), Expect = 1e-07
Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 265 QCIKVLTGHTGSVLCLQY--DERVIISGSSDSTVRVWD 300
+ ++ L GHTG V + + D ++ SGS D TVRVWD
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 43.5 bits (103), Expect = 4e-06
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 427 GACLRVLEGHEELVRCIRF--DAKRIVSGAYDGKIKVWN 463
G LR L+GH V + F D + SG+ DG ++VW+
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 42.7 bits (101), Expect = 7e-06
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 348 TLRRVLVGHRAAVNVVDF--DEKYIVSASGDRTIKVWN 383
L R L GH V V F D + S S D T++VW+
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 41.2 bits (97), Expect = 2e-05
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 387 CEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWD 423
+ +RTL GH + + + L+ SGS D T+R+WD
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 36.6 bits (85), Expect = 0.001
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 304 GEMVNTLIHHCEAVLHLRFS--NGMMVTCSKDRSIAVWD 340
G+++ TL H V + FS ++ + S D ++ VWD
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 31.9 bits (73), Expect = 0.042
Identities = 9/32 (28%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 231 SENSKGVYCLQY--DDHKIVSGLRDNTIKVWD 260
++ V + + D + + SG D T++VWD
Sbjct: 8 KGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 31.9 bits (73), Expect = 0.044
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 109 SLLPNFDEKYIVSASGDRTIKVWN 132
S+ + D + S S D T++VW+
Sbjct: 16 SVAFSPDGNLLASGSDDGTVRVWD 39
Score = 31.2 bits (71), Expect = 0.065
Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 15/54 (27%)
Query: 136 CEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRYRDEFQIVSSSHDDTILIWD 189
+ +RTL GH + + + S D + + S S D T+ +WD
Sbjct: 1 GKLLRTLKGHTGPVTSVAF--------SPDGNL-------LASGSDDGTVRVWD 39
>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional.
Length = 793
Score = 44.7 bits (105), Expect = 1e-04
Identities = 36/162 (22%), Positives = 78/162 (48%), Gaps = 13/162 (8%)
Query: 276 SVLCLQ-YDERVIISGSSDSTVRVWDVNTGEMVNTLIHHCEAVLHLRFSNG---MMVTCS 331
S +C Y + + S + + V+VWDV ++V + H + V + +S+ ++ + S
Sbjct: 536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGS 595
Query: 332 KDRSIAVWDMVSPNEITLRRVLVGHRAAVNVVDFDE---KYIVSASGDRTIKVWNTSSCE 388
D S+ +W + I + +A + V F + + S D + ++ + +
Sbjct: 596 DDGSVKLWSINQGVSIGT----IKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPK 651
Query: 389 F-VRTLNGHKRGIACLQYRDR-LVVSGSSDNTIRLWDIECGA 428
+ T+ GH + ++ +++ D +VS S+DNT++LWD+
Sbjct: 652 LPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSI 693
Score = 43.2 bits (101), Expect = 3e-04
Identities = 36/140 (25%), Positives = 68/140 (48%), Gaps = 12/140 (8%)
Query: 333 DRSIAVWDMVSPNEITLRRVLVGHRAAVNVVDF---DEKYIVSASGDRTIKVWNTSSCEF 389
+ + VWD+ +T + H V +D+ D + S S D ++K+W+ +
Sbjct: 554 EGVVQVWDVARSQLVTEMK---EHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS 610
Query: 390 VRTLNGHKRGIACLQY---RDRLVVSGSSDNTIRLWDIECGAC-LRVLEGHEELVRCIRF 445
+ T+ K I C+Q+ R + GS+D+ + +D+ L + GH + V +RF
Sbjct: 611 IGTIKT-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRF 669
Query: 446 -DAKRIVSGAYDGKIKVWNL 464
D+ +VS + D +K+W+L
Sbjct: 670 VDSSTLVSSSTDNTLKLWDL 689
Score = 40.8 bits (95), Expect = 0.002
Identities = 26/122 (21%), Positives = 61/122 (50%), Gaps = 10/122 (8%)
Query: 370 IVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYRD---RLVVSGSSDNTIRLWDIEC 426
+ S++ + ++VW+ + + V + H++ + + Y L+ SGS D +++LW I
Sbjct: 548 VASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQ 607
Query: 427 GACLRVLEGHEELVRCIRFDA---KRIVSGAYDGKIKVWNLVAALDPRAPTTTLCLRTLV 483
G + ++ + C++F + + + G+ D K+ ++L +P+ P T+ +
Sbjct: 608 GVSIGTIKTKANIC-CVQFPSESGRSLAFGSADHKVYYYDL---RNPKLPLCTMIGHSKT 663
Query: 484 VS 485
VS
Sbjct: 664 VS 665
Score = 30.1 bits (67), Expect = 3.3
Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 29/104 (27%)
Query: 115 DEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQY---RDRLVVSGSSDNTI--- 168
D + S S D ++K+W+ + + T+ K I C+Q+ R + GS+D+ +
Sbjct: 587 DPTLLASGSDDGSVKLWSINQGVSIGTIKT-KANICCVQFPSESGRSLAFGSADHKVYYY 645
Query: 169 ----------------------RYRDEFQIVSSSHDDTILIWDF 190
R+ D +VSSS D+T+ +WD
Sbjct: 646 DLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDL 689
Score = 29.3 bits (65), Expect = 5.6
Identities = 14/63 (22%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 119 IVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYRD---RLVVSGSSDNTIRYRDEFQ 175
+ S++ + ++VW+ + + V + H++ + + Y L+ SGS D +++ Q
Sbjct: 548 VASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQ 607
Query: 176 IVS 178
VS
Sbjct: 608 GVS 610
>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional.
Length = 493
Score = 43.3 bits (102), Expect = 2e-04
Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 12/111 (10%)
Query: 242 YDDHKIVSGLRDNTIKVWD-------RVSLQCIKVLTGHTGSVLCLQYD---ERVIISGS 291
+D K+ + D TI W + I L GHT V + + V+ S
Sbjct: 86 FDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAG 145
Query: 292 SDSTVRVWDVNTGEMVNTLIHHCEAVLHLRFS--NGMMVTCSKDRSIAVWD 340
+D V VWDV G+ V + H + + L ++ ++ T SKD+ + + D
Sbjct: 146 ADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIID 196
Score = 34.1 bits (78), Expect = 0.16
Identities = 27/122 (22%), Positives = 56/122 (45%), Gaps = 18/122 (14%)
Query: 365 FDEKYIVSASGDRTIKVWN------TSSC-EFVRTLNGHKRGIACLQYR---DRLVVSGS 414
FD + + +AS D TI W T + + + L GH + + + + ++ S
Sbjct: 86 FDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAG 145
Query: 415 SDNTIRLWDIECGACLRVLEGHEELVRCIRF--DAKRIVSGAYDGKIKVWNLVAALDPRA 472
+D + +WD+E G + V++ H + + + + D + + + D K+ + +DPR
Sbjct: 146 ADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNI------IDPRD 199
Query: 473 PT 474
T
Sbjct: 200 GT 201
Score = 28.7 bits (64), Expect = 7.8
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Query: 119 IVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRYRD--EF 174
+ SA D + VW+ + V + H I L++ L+ + S D + D +
Sbjct: 141 LASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDG 200
Query: 175 QIVSSS 180
IVSS
Sbjct: 201 TIVSSV 206
>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional.
Length = 568
Score = 37.2 bits (86), Expect = 0.019
Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 43/121 (35%)
Query: 270 LTGHTGSVLCLQYD---ERVIISGSSDSTVRVWDVNTGEMVNTLIHHCEAVLHLRFSNGM 326
L GHT S+L LQ++ ++ SGS D T+RVW++ H+ E+V
Sbjct: 70 LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIP---------HNDESV--------- 111
Query: 327 MVTCSKDRSIAVWDMVSPNEITLRR-VLVGHRAAVNVVDFD--EKYIVSASG-DRTIKVW 382
EI + +L GH+ ++++D++ YI+ +SG D + +W
Sbjct: 112 ------------------KEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIW 153
Query: 383 N 383
+
Sbjct: 154 D 154
Score = 34.5 bits (79), Expect = 0.13
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 14/87 (16%)
Query: 353 LVGHRAAVNVVDFDEKY---IVSASGDRTIKVW----NTSSCEFVR----TLNGHKRGIA 401
L GH +++ + F+ + + S S D TI+VW N S + ++ L GHK+ I+
Sbjct: 70 LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129
Query: 402 CLQYRDR---LVVSGSSDNTIRLWDIE 425
+ + ++ S D+ + +WDIE
Sbjct: 130 IIDWNPMNYYIMCSSGFDSFVNIWDIE 156
Score = 33.0 bits (75), Expect = 0.39
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 14/89 (15%)
Query: 390 VRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDI--------ECGACLRVLEGHEE 438
V L GH I LQ+ ++ SGS D TIR+W+I E +L+GH++
Sbjct: 67 VIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKK 126
Query: 439 LVRCIRFDAKR---IVSGAYDGKIKVWNL 464
+ I ++ + S +D + +W++
Sbjct: 127 KISIIDWNPMNYYIMCSSGFDSFVNIWDI 155
Score = 31.8 bits (72), Expect = 1.00
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 23/93 (24%)
Query: 108 ISLLPNFDEKYIVSASGDRTIKVW----NTSSCEFVR----TLNGHKRGIACLQYRDRLV 159
+ P F E + S S D TI+VW N S + ++ L GHK+ I+ + +
Sbjct: 80 LQFNPCFSE-ILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDW----- 133
Query: 160 VSGSSDNTIRYRDEFQIVSSSHDDTILIWDFLN 192
N + Y + + SS D + IWD N
Sbjct: 134 ------NPMNY---YIMCSSGFDSFVNIWDIEN 157
>gnl|CDD|220023 pfam08801, Nucleoporin_N, Nup133 N terminal like. Nup133 is a
nucleoporin that is crucial for nuclear pore complex
(NPC) biogenesis. The N terminal forms a seven-bladed
beta propeller structure. This family now contains other
sized nucleoporins, including Nup155, Nup8, Nuo132,
Nup15 and Nup170.
Length = 411
Score = 34.8 bits (80), Expect = 0.10
Identities = 14/69 (20%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 400 IACLQYRDRLVVSGSSDNTIRLWDIECGAC--LRVLEGHEELVRCIRFDAKRIVSGAYDG 457
+ R RL+ + +S TIR+WD+ +R ++ +E ++R ++ + S
Sbjct: 196 LRVDSSRGRLLYTLTSKGTIRVWDLSPSGEKLVREVDIYEIILRDLQESIPKSASTLSSK 255
Query: 458 KIKVWNLVA 466
+K+ ++
Sbjct: 256 SLKILDISP 264
Score = 29.0 bits (65), Expect = 5.7
Identities = 34/257 (13%), Positives = 85/257 (33%), Gaps = 49/257 (19%)
Query: 180 SHDDTILIWDFLNYSETPIQGGGGGGPPPSGPSIENNWRMGKFLLQRINCRSENSKGVYC 239
+ D+ + +W++ + S + PP I++ + + ++ + V+
Sbjct: 43 TIDNKLFLWNYNSTSPSLSDDSDFLLPPSIPDGIKHT------IPGVGLVKPKSGRIVF- 95
Query: 240 LQYDD----------HKIVSGLRDNTIKVWDRVSLQCIKVLTGHTGSVLCLQYDERVIIS 289
++ IV N +K+ ++ + + + + L I
Sbjct: 96 --WESISHALVLATPRDIVLLGVTNELKL---LNGELSVSVVNAEPAGIILSTSTGRIFF 150
Query: 290 GSSDSTVRVWDVNTGEMVNTLIHHCEAVLHLRFSNGMMVTCSKDRSIAVWDMVSPNEITL 349
++ + ++ L C + S + S DR I
Sbjct: 151 LGIRDSIGIPEL----QYQQLSSKCSKIGLTSASIFSSLVPSSDREIV------------ 194
Query: 350 RRVLVGHRAAVNVVDFDEKYIVSASGDRTIKVWNTS--SCEFVRTLNGHKRGIACLQYRD 407
++ V + + + + TI+VW+ S + VR ++ ++ + LQ
Sbjct: 195 ---------SLRVDSSRGRLLYTLTSKGTIRVWDLSPSGEKLVREVDIYEIILRDLQESI 245
Query: 408 RLVVSGSSDNTIRLWDI 424
S S ++++ DI
Sbjct: 246 PKSASTLSSKSLKILDI 262
>gnl|CDD|234377 TIGR03866, PQQ_ABC_repeats, PQQ-dependent catabolism-associated
beta-propeller protein. Members of this protein family
consist of seven repeats each of the YVTN family
beta-propeller repeat (see TIGR02276). Members occur
invariably as part of a transport operon that is
associated with PQQ-dependent catabolism of alcohols
such as phenylethanol.
Length = 300
Score = 33.5 bits (77), Expect = 0.20
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 248 VSGLRDNTIKVWDRVSLQCIKVL-TGHTGSVLCLQYD-ERVIISGSSDSTVRVWDVNTGE 305
VS +DNTI V D +L+ + G + D + + + S TV+V D TGE
Sbjct: 5 VSNEKDNTISVIDTATLEVTRTFPVGQRPRGITFSKDGKLLYVCASDSDTVQVIDPATGE 64
Query: 306 MVNTL 310
+++TL
Sbjct: 65 VLHTL 69
Score = 31.2 bits (71), Expect = 1.0
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 367 EKYIVSASGDRTIKVWNTSSCEFVRTLNGHK--RGIACLQYRDRLVVSGSSDNTIRLWDI 424
EK VS D TI V +T++ E RT + RGI + L V S +T+++ D
Sbjct: 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQRPRGITFSKDGKLLYVCASDSDTVQVIDP 60
Query: 425 ECGACLRVL 433
G L L
Sbjct: 61 ATGEVLHTL 69
>gnl|CDD|214813 smart00770, Zn_dep_PLPC, Zinc dependent phospholipase C (alpha
toxin). This domain conveys a zinc dependent
phospholipase C activity (EC 3.1.4.3). It is found in a
monomeric phospholipase C of Bacillus cereus as well as
in the alpha toxin of Clostridium perfringens and
Clostridium bifermentans, which is involved in
haemolysis and cell rupture. It is also found in a
lecithinase of Listeria monocytogenes, which is involved
in breaking the 2-membrane vacuoles that surround the
bacterium. Structure information: PDB 1ca1.
Length = 241
Score = 33.2 bits (76), Expect = 0.22
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
Query: 45 YDPNRKKEPAPQFASEKEMCFKYFD---KWSEQDQIDFVENLLSRMCHY 90
YDP+ K P F++ K+ KYF ++ L R CHY
Sbjct: 95 YDPDTGKNYLPGFSNAKDTGRKYFKLALNEWKKGNYKKAFFYLGRACHY 143
>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including Streptoalloteichus
tallysomycin biosynthesis genes. The adenylation (A)
domain of NRPS recognizes a specific amino acid or
hydroxy acid and activates it as an (amino) acyl
adenylate by hydrolysis of ATP. The activated acyl
moiety then forms a thioester to the enzyme-bound
cofactor phosphopantetheine of a peptidyl carrier
protein domain. NRPSs are large multifunctional enzymes
which synthesize many therapeutically useful peptides in
bacteria and fungi via a template-directed, nucleic acid
independent nonribosomal mechanism. These natural
products include antibiotics, immunosuppressants, plant
and animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and in some
cases, modification of a single amino acid residue of
the final peptide product. The modules can be subdivided
into domains that catalyze specific biochemical
reactions. This family includes the TLM biosynthetic
gene cluster from Streptoalloteichus that consists of
nine NRPS genes; the N-terminal module of TlmVI (NRPS-5)
and the starter module of BlmVI (NRPS-5) are comprised
of the acyl CoA ligase (AL) and acyl carrier protein
(ACP)-like domains, which are thought to be involved in
the biosynthesis of the beta-aminoalaninamide moiety.
Length = 476
Score = 32.6 bits (75), Expect = 0.52
Identities = 29/122 (23%), Positives = 43/122 (35%), Gaps = 43/122 (35%)
Query: 352 VLVGHRAAVNVV-DFDEKYIVSASGDRTIKVWNTSSCEFVRTLNGHKRGIACLQYRDRLV 410
V++ HRAAVN + D + ++ V + DR + + S+ F D L
Sbjct: 144 VMITHRAAVNTILDVNRRFGVGPA-DRVLAL---SALHF-----------------D-LS 181
Query: 411 VSGSSDNTIRLWDI----ECGACLRVLEGHEELVRCIRFDAKRIVSGAYDGKIKVWNLVA 466
V +DI GA L + + R D + VWN V
Sbjct: 182 V----------YDIFGALSAGAALVLPDEAR------RRDPDHWAELVQRHGVTVWNSVP 225
Query: 467 AL 468
AL
Sbjct: 226 AL 227
>gnl|CDD|239157 cd02756, MopB_Arsenite-Ox, Arsenite oxidase (Arsenite-Ox) oxidizes
arsenite to the less toxic arsenate; it transfers the
electrons obtained from the oxidation of arsenite
towards the soluble periplasmic electron carriers
cytochrome c and/or amicyanin. Arsenite oxidase is a
heterodimeric enzyme containing a large and a small
subunit. The large catalytic subunit harbors the
molybdopterin cofactor and the [3Fe-4S] cluster; and the
small subunit belongs to the structural class of the
Rieske proteins. The small subunit is not included in
this alignment. Members of MopB_Arsenite-Ox CD belong to
the molybdopterin_binding (MopB) superfamily of
proteins.
Length = 676
Score = 30.9 bits (70), Expect = 1.7
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 10/37 (27%)
Query: 200 GGGGGGPPPSGPSIENNWRMGKFL---LQRINCRSEN 233
GGGGGG ENNW +GKF LQ R N
Sbjct: 166 GGGGGG-------FENNWGVGKFFFMALQTPFVRIHN 195
>gnl|CDD|198228 cd10365, SH2_Src_Src, Src homology 2 (SH2) domain found in tyrosine
kinase sarcoma (Src). Src is a member of the Src
non-receptor type tyrosine kinase family of proteins.
Src is thought to play a role in the regulation of
embryonic development and cell growth. Members here
include v-Src and c-Src. v-Src lacks the C-terminal
inhibitory phosphorylation site and is therefore
constitutively active as opposed to normal cellular src
(c-Src) which is only activated under certain
circumstances where it is required (e.g. growth factor
signaling). v-Src is an oncogene whereas c-Src is a
proto-oncogene. c-Src consists of three domains, an
N-terminal SH3 domain, a central SH2 domain and a
tyrosine kinase domain. The SH2 and SH3 domains work
together in the auto-inhibition of the kinase domain.
The phosphorylation of an inhibitory tyrosine near the
c-terminus of the protein produces a binding site for
the SH2 domain which then facilitates binding of the SH3
domain to a polyproline site within the linker between
the SH2 domain and the kinase domain. Binding of the SH3
domain inactivates the enzyme. This allows for multiple
mechanisms for c-Src activation: dephosphorylation of
the C-terminal tyrosine by a protein tyrosine
phosphatase, binding of the SH2 domain by a competitive
phospho-tyrosine residue, or competitive binding of a
polyproline binding site to the SH3 domain. Unlike most
other Src members Src lacks cysteine residues in the SH4
domain that undergo palmitylation. Serine and threonine
phosphorylation sites have also been identified in the
unique domains of Src and are believed to modulate
protein-protein interactions or regulate catalytic
activity. Alternatively spliced forms of Src, which
contain 6- or 11-amino acid insertions in the SH3
domain, are expressed in CNS neurons. c-Src has a unique
N-terminal domain, an SH3 domain, an SH2 domain, a
kinase domain and a regulatory tail, as do the other
members of the family. In general SH2 domains are
involved in signal transduction. They typically bind
pTyr-containing ligands via two surface pockets, a pTyr
and hydrophobic binding pocket, allowing proteins with
SH2 domains to localize to tyrosine phosphorylated
sites.
Length = 101
Score = 28.1 bits (62), Expect = 3.7
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 6/40 (15%)
Query: 212 SIENNWRMGKFLLQRINCRSENSKGVYCLQYDDHKIVSGL 251
+ EN G FL++ SE +KG YCL D GL
Sbjct: 21 NAEN--PRGTFLVRE----SETTKGAYCLSVSDFDNAKGL 54
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.136 0.425
Gapped
Lambda K H
0.267 0.0643 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 24,515,124
Number of extensions: 2334917
Number of successful extensions: 2035
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1889
Number of HSP's successfully gapped: 68
Length of query: 486
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 385
Effective length of database: 6,457,848
Effective search space: 2486271480
Effective search space used: 2486271480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (27.5 bits)