RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9184
(562 letters)
>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase,
CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo
sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A*
2wb8_A
Length = 336
Score = 276 bits (707), Expect = 8e-89
Identities = 128/327 (39%), Positives = 184/327 (56%), Gaps = 7/327 (2%)
Query: 243 LDICQQEDVVSFEDRYPSSALKNCKKIGEGVYGEVFKLNN----SVIKIMPIEGDQSVNG 298
+ C Q+ V F P+ L+ C+KIGEGV+GEVF+ IKI+ IEG VNG
Sbjct: 2 MGECSQKGPVPFSHCLPTEKLQRCEKIGEGVFGEVFQTIADHTPVAIKIIAIEGPDLVNG 61
Query: 299 EEQKKFREIFSEIMVTKETSDLQYRTENSTPCFTELLKCSCVRGRYPDRLVTLWEEFAKT 358
QK F EI EI+++KE S L N T F L CV+G YP L+ W+ + T
Sbjct: 62 SHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGLNSVHCVQGSYPPLLLKAWDHYNST 121
Query: 359 KKSYNDHPSMFEEDQIFIILELKNGGND--SGDIKYRSPNQTYAMILQVVFSLAVAEVEL 416
K S ND P F++DQ+FI+LE + GG D K S +++ Q+ SLAVAE L
Sbjct: 122 KGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRTKLSSLATAKSILHQLTASLAVAEASL 181
Query: 417 EFEHRDLHMSNILVLQTDQDESSFTLDDTHYAMKTAGVQVTIIDFTISRCFVGEKICYYD 476
FEHRDLH N+L+ +T + +TL+ + + G+QV+IID+T+SR + + D
Sbjct: 182 RFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERDGIVVFCD 241
Query: 477 LSQDEELFEGEGDYQFDMYRMMRKQCQNNWQNFTPKNNVFWIHYLVDKATCLKKGYQYLR 536
+S DE+LF G+GDYQFD+YR+M+K+ N W + P +NV W+HYL DK
Sbjct: 242 VSMDEDLFTGDGDYQFDIYRLMKKENNNRWGEYHPYSNVLWLHYLTDKMLKQMTFKTKCN 301
Query: 537 APRHQAFE-LLEELGQNALHFDSCYEM 562
P + + ++E + L+F S ++
Sbjct: 302 TPAMKQIKRKIQEFHRTMLNFSSATDL 328
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 68.7 bits (167), Expect = 3e-12
Identities = 80/615 (13%), Positives = 171/615 (27%), Gaps = 174/615 (28%)
Query: 20 LDDTVIEDNGNKTALNKCE-------SNEEDEMYY----------SQTEDSVIEAHKKSV 62
D ++D K+ L+K E + + V E + +
Sbjct: 33 FDCKDVQDM-PKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY 91
Query: 63 RFLDETLKKEKTDNKAEKNNNSVGTVKSVGIHRDLKDAEEGQGDAVAQFNRLRNVTVRRG 122
+FL +K E+ + + +D A++N R +
Sbjct: 92 KFLMSPIKTEQRQPSMMTRM-----------YIEQRDRLYNDNQVFAKYNVSRLQPYLKL 140
Query: 123 RKFIAEDADTTLQPNKVSLASGRFTMEDVDTTLHRTKVSLAPGKMWKRSLINNSIREQHK 182
R+ + E L+P K L G + L GK W + + +K
Sbjct: 141 RQALLE-----LRPAKNVLIDG---V-------------LGSGKTW---VALDVCLS-YK 175
Query: 183 VSHKF-CRSF-VSYSEEFSSA------VSFKSRRSSSLSSTGDEDTLYETVLSSSLQYDD 234
V K + F ++ S + + +S D + + + S
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235
Query: 235 NEFCRKK------ILD-ICQQEDVVSFEDRYPSSALKNCKKI----GEGVYGEVFKLNNS 283
K +L + + +F CK + + V L+ +
Sbjct: 236 RLLKSKPYENCLLVLLNVQNAKAWNAFNLS--------CKILLTTRFKQV---TDFLSAA 284
Query: 284 VIKIMPIEGDQSVNGEEQKKFREIFSEIMVTKETSDLQYRTENSTPCFTELLKCSCVRGR 343
+ ++ + + + + + DL + P + S +
Sbjct: 285 TTTHISLD--HHSMTLTPDEVKSLLLKY-LDCRPQDLPREVLTTNP-----RRLSIIAES 336
Query: 344 YPDRLVTLWEEFAKT---------KKSYN-----DHPSMFEEDQIFIILELKNGGNDSGD 389
D L T W+ + + S N ++ MF+ +F S
Sbjct: 337 IRDGLAT-WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF---------PPSAH 386
Query: 390 IKYRSPNQTYAMILQVVFSLAVAEVELEFEHRDLHMSNILVLQTDQDESSFTLDDTHYAM 449
I P L +++ + + + + +++ ES+ ++ + +
Sbjct: 387 I----PTIL----LSLIWFDVIKSDVMVVVN---KLHKYSLVEKQPKESTISIPSIYLEL 435
Query: 450 KT-----AGVQVTIID-FTISRCFVGEKICYYDLSQDEELFEGEGD---YQFDMYRMMRK 500
K + +I+D + I + F DL D Y + +
Sbjct: 436 KVKLENEYALHRSIVDHYNIPKTF-----DSDDLIPPYL------DQYFYSHIGHHLKNI 484
Query: 501 QCQNNWQNFTPKNNVF----WI--------------HYLVDKATCLKKGYQYLRAPRHQA 542
+ F VF ++ +++ LK Y+
Sbjct: 485 EHPERMTLFR---MVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYIC-DNDPK 540
Query: 543 FE-LLEELGQNALHF 556
+E L+ + L F
Sbjct: 541 YERLVNAI----LDF 551
Score = 39.5 bits (91), Expect = 0.003
Identities = 53/402 (13%), Positives = 110/402 (27%), Gaps = 110/402 (27%)
Query: 230 LQYDDNE--FCRKKILDICQQEDVVSFEDRYPSSALKNCKKIGEGVYGEVFKLNNSV--- 284
+ ++ E + K IL + + V +F+ + K+ E + ++V
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEE--IDHIIMSKDAVSGT 64
Query: 285 ---IKIMPIEGDQS----VNGEEQKKFREIFSEI--------MVTKETSDLQYRTENSTP 329
+ + ++ V + ++ + S I M+T+ + + R N
Sbjct: 65 LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124
Query: 330 CFTEL----------LKCSCVRGRYPDRLVTLW--EEFAKT---KKSYNDHP--SMFEED 372
F + L+ + P + V + KT + +
Sbjct: 125 VFAKYNVSRLQPYLKLR-QALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM-DF 182
Query: 373 QIFIILELKNGGNDSGDIKYRSPNQTYAMILQVVFSLAVAEVELEFEHRDLHMSNI---- 428
+IF + N N SP M+ ++++ + + + R H SNI
Sbjct: 183 KIFWL----NLKN------CNSPETVLEMLQKLLYQI-----DPNWTSRSDHSSNIKLRI 227
Query: 429 ---------LVLQTDQDESSFTLDDTHYA--MKTAGVQ----VTIIDFTISRCFVGEKIC 473
L+ + L + A + +T ++
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT 287
Query: 474 YYDLSQDEELF-EGEGDYQFDMYRMMRKQ------CQNN-----------------WQNF 509
+ L E Y R Q N W N
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN- 346
Query: 510 TPKNNVFWIHYLVDK-ATCLKKGYQYLRAPRHQAFELLEELG 550
W H DK T ++ L ++ ++ + L
Sbjct: 347 -------WKHVNCDKLTTIIESSLNVLEPAEYR--KMFDRLS 379
Score = 34.8 bits (79), Expect = 0.088
Identities = 53/433 (12%), Positives = 118/433 (27%), Gaps = 140/433 (32%)
Query: 7 LDDSGDK--------------TSRYIALDDTVIEDNGNKTALNKCESNEEDEMYYSQTED 52
L + + T+R+ + D + +L D + T D
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL--------DHHSMTLTPD 301
Query: 53 SVIEAHKKSVRFLDETLKKEKTDNKAEKNN----NSVGTVKSVGIHRDLKDAEEGQGDAV 108
V K + + L +E N + + G+
Sbjct: 302 EVKSLLLKYLDCRPQDLPRE-----VLTTNPRRLSIIAESIRDGLAT------------- 343
Query: 109 AQFNRLRNVTVRRGRKFIAEDADTTLQPNKV-----SLASGRFTMEDVDTTLHRTKVSLA 163
++ ++V + I + L+P + L+ F T + L+
Sbjct: 344 --WDNWKHVNCDKLTTIIESSLN-VLEPAEYRKMFDRLSV--F-PPSAHIP---TIL-LS 393
Query: 164 PGKMWKRSLINNSIREQHKVSHKFCRSFVSYSEEFSSAVSFKSRRSSSLSSTGDEDTLYE 223
+W + + V +K + S V K + S++S +
Sbjct: 394 --LIWF----DVIKSDVMVVVNKLHK---------YSLV-EKQPKESTIS-------IPS 430
Query: 224 TVLSSSLQYDDNEFCRKKILD-------ICQQEDVVSFEDRYPSSALKNCKKIGEGVYGE 276
L ++ ++ + I+D + + + D+Y IG +
Sbjct: 431 IYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY------FYSHIG---H-- 479
Query: 277 VFKLNNSVIKIMPIEGDQSVNGEEQKKFREIFSEIMVTKETSDLQYRTENSTPCFTEL-L 335
+ IE + E FR +F L +R F E +
Sbjct: 480 ---------HLKNIE-----HPERMTLFRMVF-----------LDFR-------FLEQKI 507
Query: 336 KCSCVRGRYPDRLVTLWEEFAKTKKSYNDHPSMFEEDQIFIILELKNGGNDSGDIKYRSP 395
+ ++ ++ K D+ +E ++ + + + S
Sbjct: 508 RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYER----LVNAILDFLPKIEENLICSK 563
Query: 396 NQTYAMILQVVFS 408
Y +L++
Sbjct: 564 ---YTDLLRIALM 573
>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding,
phosphorylation, allosteric enzyme, alternative
splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A
{Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A*
1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*
Length = 297
Score = 46.5 bits (111), Expect = 1e-05
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 16/74 (21%)
Query: 249 EDVVSFEDRYPSSALKNCKKIGEGVYGEVFK-----LNNSV-IKIMPIEGDQSVNGEEQK 302
+VS D P +KIG+G G V+ V I+ M + ++Q
Sbjct: 10 RSIVSVGD--PKKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNL--------QQQP 59
Query: 303 KFREIFSEIMVTKE 316
K I +EI+V +E
Sbjct: 60 KKELIINEILVMRE 73
>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding,
transferase, nucleotide-binding; HET: SEP; 1.6A {Homo
sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A*
2bva_A*
Length = 321
Score = 46.6 bits (111), Expect = 1e-05
Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 16/74 (21%)
Query: 249 EDVVSFEDRYPSSALKNCKKIGEGVYGEVFKLNNSV------IKIMPIEGDQSVNGEEQK 302
VV D P L + KIGEG G V +K+M + +Q+
Sbjct: 35 RMVVDQGD--PRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDL--------RKQQ 84
Query: 303 KFREIFSEIMVTKE 316
+ +F+E+++ ++
Sbjct: 85 RRELLFNEVVIMRD 98
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.8 bits (108), Expect = 3e-05
Identities = 85/561 (15%), Positives = 152/561 (27%), Gaps = 201/561 (35%)
Query: 4 PEPLDD--SGDKTS-------RYIALDDTVIEDNGN-------KTALNKCESNEEDEMYY 47
PEP + + D+ + +++ +++E + L + E+ Y
Sbjct: 42 PEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENC------Y 95
Query: 48 SQTEDSVIEAHKKSVRFL---DETLKKEKTDNKAEKNNNSVGTVKSVGIHRD--LKDAEE 102
+ D I H + + L D TL K K K + + E
Sbjct: 96 LEGND--I--HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGE 151
Query: 103 ----------GQGDAVAQFNRLRNVTVRRGRKFIA---EDADTTLQPNKVSLASGRFTME 149
GQG+ F LR++ + + + + TL L E
Sbjct: 152 GNAQLVAIFGGQGNTDDYFEELRDL-YQTYHVLVGDLIKFSAETLSE----LIRTTLDAE 206
Query: 150 -------DVDTTLHRTKVSLAPGKMWKRS------LINNSIREQHKVSH--KFCRSFVSY 194
++ L S P K + S LI Q ++H +
Sbjct: 207 KVFTQGLNILEWLENP--SNTPDKDYLLSIPISCPLIGVI---Q--LAHYVVTAKLLGFT 259
Query: 195 SEEFSSAVSFKSRRSSSL------SSTGDEDTLYETVLSSSLQYDDNEF---CRKKILDI 245
E S + + S L + T ++ + +V + + F R
Sbjct: 260 PGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKA-ITV---LFFIGVR------ 309
Query: 246 CQQEDVVSFEDRYPSSAL-----KNCKKIGEGV--YGEVFKLNNSVIKIMPIEGDQSVNG 298
C + YP+++L ++ + EGV M S++
Sbjct: 310 CYE--------AYPNTSLPPSILEDSLENNEGVPSP-------------M-----LSISN 343
Query: 299 EEQKKFREIFSEIMVTKETSDLQYRTE----NSTPCFTELLKCSCVRGRYPDRLVTLWEE 354
Q+ ++ + T + E N V G P L L
Sbjct: 344 LTQE---QVQDYVNKTNSHLPAGKQVEISLVNGAKNLV-------VSG-PPQSLYGLNLT 392
Query: 355 FAKTKKSYNDHPSMFEEDQIFIILELKNGGNDSGDIKYR------------------SP- 395
K K PS G D I + S
Sbjct: 393 LRKAKA-----PS----------------GLDQSRIPFSERKLKFSNRFLPVASPFHSHL 431
Query: 396 -NQTYAMILQVVFSLAVAEVELEFEHRDLHMSNILVLQT----DQDESSFTLDDTHYAM- 449
+I + + + + F +D+ I V T D S ++ +
Sbjct: 432 LVPASDLINK-----DLVKNNVSFNAKDIQ---IPVYDTFDGSDLRVLSGSISERIVDCI 483
Query: 450 --------KTAGVQVT-IIDF 461
T + T I+DF
Sbjct: 484 IRLPVKWETTTQFKATHILDF 504
Score = 44.3 bits (104), Expect = 1e-04
Identities = 66/462 (14%), Positives = 122/462 (26%), Gaps = 196/462 (42%)
Query: 129 DADTTLQPNKVSLASGRFTMEDVDTTLHRTKVSLAPGKMWKRSLINNSIREQHKVSHKFC 188
DA + +P ++L+ G ++ L L P + + Q + +F
Sbjct: 2 DA-YSTRP--LTLSHG-----SLEHVL------LVPTASFFIA-------SQLQ--EQFN 38
Query: 189 RSFVSYSEEF------SSAVSFKSRRSSSLSSTGDEDTL--YETVLSSSLQYDDNEFCRK 240
+ +E F ++ + +SS + + ++ VL+ L +N +
Sbjct: 39 KILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEG 98
Query: 241 KILDI----------------CQQEDVVSF----------EDRYPSSALKNCKKIGEGVY 274
DI +E + ++ D+ +SAL G
Sbjct: 99 N--DIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGN--- 153
Query: 275 GEVFKLNNSVIKIMPIEGDQSVNGEEQKKFREIFSEIMVTKETSDLQ--YRTENSTPCFT 332
+++ I G Q G F E L+ Y+T
Sbjct: 154 ----------AQLVAIFGGQ---GNTDDYFEE-------------LRDLYQT--YHVLVG 185
Query: 333 ELLKCSCVRGRYPDRLVTLWEEFAKTKKSYNDHPSMFEEDQIFIILE-LKNGGNDSGDIK 391
+L+K S + L L +K + Q ILE L+N
Sbjct: 186 DLIKFSA------ETLSELIRTTLDAEKVFT---------QGLNILEWLENPS------- 223
Query: 392 YRSPNQTYAMILQVVFSLAVAEVELEFEHRDLHMSNILVLQTDQDESSFTLDDTHYAM-- 449
+P++ Y L + I V+Q HY +
Sbjct: 224 -NTPDKDY---------LLSIPISCPL---------IGVIQL-----------AHYVVTA 253
Query: 450 KTAGVQVTIIDFTISRCFVGEKICYYDL--------SQDEELFEGEGDYQFDMYRMMRKQ 501
K G + G L + E F ++
Sbjct: 254 KLLGFTPG----ELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVR---KAITVL--- 303
Query: 502 CQNNWQNFTPKNNVFWIHYLVDKATCLKKGYQYLRAPRHQAF 543
F+I G +R ++A+
Sbjct: 304 --------------FFI------------G---VRC--YEAY 314
Score = 40.8 bits (95), Expect = 0.001
Identities = 37/241 (15%), Positives = 66/241 (27%), Gaps = 93/241 (38%)
Query: 351 LWEEFAKTKKSYNDHPSMFEEDQIFIILELKNGGNDSGDIKY---------RSPNQTYAM 401
L E+F K + + +D+ EL K+ S +
Sbjct: 33 LQEQFNKILPEPTEGFA--ADDEPTTPAELV--------GKFLGYVSSLVEPSKVGQFDQ 82
Query: 402 ILQVVFSLAVAEVELEFEHRDLHMSNI--LVLQTDQDESSFTLDDTHYAMKTAGVQVTII 459
+L + + EFE+ L ++I L + Q+ + TL T +K
Sbjct: 83 VLNLCLT--------EFENCYLEGNDIHALAAKLLQENDT-TLVKTKELIKN-------- 125
Query: 460 DFTISRCFVGEKICYYDLS------QDEE-----LFEGEG---DYQFD----MYRMMRKQ 501
+ +R S + +F G+G DY F+ +Y+
Sbjct: 126 -YITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDY-FEELRDLYQT---- 179
Query: 502 CQNNWQNFTPKNNVFWIHYLVDKATCLKKGYQYLRAPR-HQAFELLEELGQNALHFDSCY 560
Y L + E L EL + L + +
Sbjct: 180 ------------------------------YHVLVGDLIKFSAETLSELIRTTLDAEKVF 209
Query: 561 E 561
Sbjct: 210 T 210
Score = 35.8 bits (82), Expect = 0.049
Identities = 41/290 (14%), Positives = 89/290 (30%), Gaps = 88/290 (30%)
Query: 9 DSGDK--TSRY-IALDDTVIEDNGNKTALNKCESNEE-DEMYYSQTEDSVIEAHKKSVRF 64
+ D Y ++ D VI + N T E + E Y + +++++ K+ +
Sbjct: 1647 NRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKI 1706
Query: 65 ---LDETLKK----------EKTDNKAEKNNNSVGT-----VKSVGIHRDLKDAEEG--Q 104
++E T T + DLK +G
Sbjct: 1707 FKEINEHSTSYTFRSEKGLLSATQF----------TQPALTLMEKAAFEDLK--SKGLIP 1754
Query: 105 GD---------------AVAQFNRLRNV--TVR-RGRKFIAEDADTTLQPNKVSLASGRF 146
D ++A + ++ V RG + + L +
Sbjct: 1755 ADATFAGHSLGEYAALASLADVMSIESLVEVVFYRG-MTMQVAVP------RDELGRSNY 1807
Query: 147 TMEDVDTTLHRTKVSLAPGKMWKRSLINNSIREQHKVSHKFCRSFVSYSEEFSSAVSFKS 206
M +++ PG++ S +++ + V++
Sbjct: 1808 GM-----------IAINPGRV-AASFSQEALQY-------VVERVGKRTGWLVEIVNYNV 1848
Query: 207 RRSSSLSSTGDEDTLYETVLSSSLQYDDNEFCRKKILDICQQEDVVSFED 256
+++ GD L +T +++ L N +KI DI + + +S E+
Sbjct: 1849 ENQQYVAA-GDLRAL-DT-VTNVL----NFIKLQKI-DIIELQKSLSLEE 1890
Score = 34.6 bits (79), Expect = 0.098
Identities = 37/219 (16%), Positives = 65/219 (29%), Gaps = 53/219 (24%)
Query: 124 KFIAEDADTTLQPNKVSLASGRFTMEDVDTTLHRTKVSLAPGKMWKRSLINNSIREQHKV 183
+ + AD + G F++ D+ G+ KR IRE +
Sbjct: 1643 QDVWNRADNHFKDTY-----G-FSILDIVINNPVNLTIHFGGEKGKR------IRENY-S 1689
Query: 184 SHKFCRSFVSYSEEFSSAVSFKSRRSSSLSSTGDEDTLYET-------VLSSSLQYDDNE 236
+ F + V + + S+S + ++ L T L + E
Sbjct: 1690 AMIF-ETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAF---E 1745
Query: 237 FCRKK-ILDICQQ-------E--------DVVSFED-----RYPSSALKNC---KKIGEG 272
+ K ++ E DV+S E Y ++ ++G
Sbjct: 1746 DLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRS 1805
Query: 273 VYGEVFKLN-NSVIKIMPIEGDQSV---NGEEQKKFREI 307
YG + +N V E Q V G+ EI
Sbjct: 1806 NYG-MIAINPGRVAASFSQEALQYVVERVGKRTGWLVEI 1843
>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein
kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}
Length = 326
Score = 44.3 bits (105), Expect = 6e-05
Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 17/82 (20%)
Query: 247 QQEDVVSFEDRYPSSALKNCKKIGEGVYGEVFK-----LNNSV-IKIMPIEGDQSVNGEE 300
+ D+ + D P+ + + +G G YG+V+K IK+M + GD
Sbjct: 12 DEIDLSALRD--PAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGD------- 62
Query: 301 QKKFREIFSEIMVTKETSDLQY 322
+ EI EI + K+ S +
Sbjct: 63 --EEEEIKQEINMLKKYSHHRN 82
>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7,
activated mutant, ATP-binding, structural genomics,
NPPSFA; 2.45A {Homo sapiens}
Length = 318
Score = 43.5 bits (103), Expect = 9e-05
Identities = 33/198 (16%), Positives = 62/198 (31%), Gaps = 60/198 (30%)
Query: 242 ILDICQQEDVVSFEDRYPSSALKNCKKIGEGVYGEVFKLNN------SVIKIMPIEGDQS 295
L I Q D L+N ++G G G+V+K+ +K M G++
Sbjct: 12 YLTIGGQRYQAEIND------LENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKE 65
Query: 296 VNGEEQKKFREIFSEIMVTKETSDLQYRTENSTPCFTELLKCSCVRGRYPDRLVTLWEEF 355
+ + I ++ V ++ D Y +
Sbjct: 66 -------ENKRILMDLDVVLKSHDCPYIV------------------QC----------- 89
Query: 356 AKTKKSYNDHPSMFEEDQIFIILELKNGGNDSGDIKYRSP---NQTYAMILQVVFSLAVA 412
+ +FI +EL + + + P M + +V +L
Sbjct: 90 ---------FGTFITNTDVFIAMELMGTCAEKLKKRMQGPIPERILGKMTVAIVKALYYL 140
Query: 413 EVELEFEHRDLHMSNILV 430
+ + HRD+ SNIL+
Sbjct: 141 KEKHGVIHRDVKPSNILL 158
>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A
{Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*
Length = 348
Score = 42.8 bits (101), Expect = 2e-04
Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 13/84 (15%)
Query: 239 RKKILDICQQEDVVSFEDRYPSSALKNCKKIGEGVYGEVFK-----LNNSV-IKIMPIEG 292
R L ++ +D P + ++IG G +G V+ + V IK M G
Sbjct: 34 RAGSLKDPDVAELFFKDD--PEKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSG 91
Query: 293 DQSVNGEEQKKFREIFSEIMVTKE 316
QS +K+++I E+ ++
Sbjct: 92 KQS-----NEKWQDIIKEVRFLQK 110
>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell
cycle progression, phosphorylation, disease mutation,
nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB:
4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*
Length = 302
Score = 40.4 bits (95), Expect = 9e-04
Identities = 11/83 (13%), Positives = 31/83 (37%), Gaps = 22/83 (26%)
Query: 240 KKILDICQQEDVVSFEDRYPSSALKNCKKIGEGVYGEVFKLNNSV------IKIMPIEGD 293
++ + + D P+ + ++G+G +G+V+K N K++
Sbjct: 6 REYEHVRRDLD--------PNEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIET--- 54
Query: 294 QSVNGEEQKKFREIFSEIMVTKE 316
+ +++ + EI +
Sbjct: 55 -----KSEEELEDYIVEIEILAT 72
>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI,
structural genomics, protein structure initiative; HET:
TPO; 2.20A {Homo sapiens}
Length = 314
Score = 39.7 bits (93), Expect = 0.002
Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 24/83 (28%)
Query: 240 KKILDICQQEDVVSFEDRYPSSALKNCKKIGEGVYGEVFKLNNSV------IKIMPIEGD 293
KK+ + + P +K+GEG YG V+K + IK +P+E D
Sbjct: 16 KKLDEDSLTKQ--------PEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVESD 67
Query: 294 QSVNGEEQKKFREIFSEIMVTKE 316
+EI EI + ++
Sbjct: 68 ----------LQEIIKEISIMQQ 80
>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase,
phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus
musculus}
Length = 332
Score = 38.3 bits (89), Expect = 0.005
Identities = 28/190 (14%), Positives = 55/190 (28%), Gaps = 32/190 (16%)
Query: 267 KKIGEGVYGEVFKLNNS------VIKIMPIEGDQSVNGEEQKKFREI----------FSE 310
+ +G G +G VF+ N IK + + + +K RE+
Sbjct: 12 QCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNREL---AREKVMREVKALAKLEHPGIVR 68
Query: 311 IMVTKETSDLQYRTENSTPCFTELLKCSCVRGRYPDRLVTLWE----EFAKTKKSYNDHP 366
+ + E + + + + TK +
Sbjct: 69 YFNAWLETPPEKWQEEMDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQ 128
Query: 367 SMFEEDQIFIILELKNGGNDSGDIKYRSPNQT------YAMILQVVFSLAVAEV-ELEFE 419
+ ++I ++L N + R + + +Q+ AV +
Sbjct: 129 PSSPKVYLYIQMQLCRKENLKDWMNRRCSLEDREHGVCLHIFIQIA--EAVEFLHSKGLM 186
Query: 420 HRDLHMSNIL 429
HRDL SNI
Sbjct: 187 HRDLKPSNIF 196
>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast);
two-LOBE protein kinase fold, ATP-binding, nucleotid
binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens}
PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A*
3ggf_A* 2xik_A*
Length = 303
Score = 38.1 bits (89), Expect = 0.005
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 13/64 (20%)
Query: 259 PSSALKNCKKIGEGVYGEVFK-----LNNSV-IKIMPIEGDQSVNGEEQKKFREIFSEIM 312
P +KIG+G +GEVFK V IKI+ +E E + + +I EI
Sbjct: 20 PEELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLE-------EAEDEIEDIQQEIT 72
Query: 313 VTKE 316
V +
Sbjct: 73 VLSQ 76
>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension,
transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*
Length = 303
Score = 38.1 bits (89), Expect = 0.005
Identities = 12/64 (18%), Positives = 19/64 (29%), Gaps = 13/64 (20%)
Query: 259 PSSALKNCKKIGEGVYGEVFK-----LNNSV-IKIMPIEGDQSVNGEEQKKFREIFSEIM 312
+ + IG G V V IK + +E + Q E+ EI
Sbjct: 13 NRDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLE-------KCQTSMDELLKEIQ 65
Query: 313 VTKE 316
+
Sbjct: 66 AMSQ 69
>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase,
ATP-binding, disease mutation, nucleoti binding,
phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB:
3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A*
2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3dv3_A* 3mbl_A* 3pp1_A*
3orn_A* 3os3_A* 3sls_A* 1s9i_A*
Length = 360
Score = 37.9 bits (88), Expect = 0.008
Identities = 39/214 (18%), Positives = 75/214 (35%), Gaps = 66/214 (30%)
Query: 229 SLQYDDNEFCR-KKILDICQQEDVVSFEDRYPSSALKNCKKIGEGVYGEVFKLNNS---- 283
L+ D+ + R + L Q+ + +D + ++G G G VFK+++
Sbjct: 6 ELELDEQQRKRLEAFLTQKQKVGELKDDD------FEKISELGAGNGGVVFKVSHKPSGL 59
Query: 284 --VIKIMPIEGDQSVNGEEQKKFREIFSEIMVTKETSDLQYRTENSTPCFTELLKCSCVR 341
K++ +E ++ +I E+ V L +C+
Sbjct: 60 VMARKLIHLEIKPAI-------RNQIIRELQV--------------------LHECNS-- 90
Query: 342 GRYPDRLVTLWEEFAKTKKSYNDHPSMFEEDQIFIILELKNGGNDSGDIKYRSPNQTYAM 401
+V + + + + +I I +E +GG S D + +
Sbjct: 91 ----PYIVGF-------------YGAFYSDGEISICMEHMDGG--SLDQVLKKAGRIPEQ 131
Query: 402 IL-----QVVFSLAVAEVELEFEHRDLHMSNILV 430
IL V+ L + + HRD+ SNILV
Sbjct: 132 ILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILV 165
>2a19_B Interferon-induced, double-stranded RNA-activated kinase;
transferase, protein biosynthesis, protein synthesis
transferase complex; HET: TPO ANP; 2.50A {Homo sapiens}
PDB: 2a1a_B*
Length = 284
Score = 37.3 bits (87), Expect = 0.009
Identities = 33/175 (18%), Positives = 59/175 (33%), Gaps = 49/175 (28%)
Query: 267 KKIGEGVYGEVFKLNNS------VIKIMPIEGDQSVNGEEQKKFREIFSEIMVTKETSDL 320
+ IG G +G+VFK + VIK + +K RE+ + + + L
Sbjct: 17 ELIGSGGFGQVFKAKHRIDGKTYVIKRVKYN--------NEKAEREV--KAL-----AKL 61
Query: 321 QYRTENSTPCFTELLKCSCVRGRYPDRLVTLWEEFAKTKKSYNDHPSMFEEDQIFIILEL 380
+ N Y W+ F ++ + + S + +FI +E
Sbjct: 62 DH--VNIV--------------HYNGC----WDGFDYDPETSSKNSSRSKTKCLFIQMEF 101
Query: 381 KNGGNDSGDIKYR-----SPNQTYAMILQVVFSLAVAEV-ELEFEHRDLHMSNIL 429
+ G I+ R + Q+ V + + +RDL SNI
Sbjct: 102 CDKGTLEQWIEKRRGEKLDKVLALELFEQIT--KGVDYIHSKKLINRDLKPSNIF 154
>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP
complex, transferase; HET: ANP; 2.30A {Homo sapiens}
PDB: 3alo_A*
Length = 327
Score = 35.4 bits (82), Expect = 0.040
Identities = 36/194 (18%), Positives = 69/194 (35%), Gaps = 60/194 (30%)
Query: 252 VSFEDRYPSSA--LKNCKKIGEGVYGEVFKL----NNSV--IKIMPIEGDQSVNGEEQKK 303
+S E + +A LK+ +IG G YG V K+ + + +K + D+ +
Sbjct: 11 ISPEQHWDFTAEDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEK-------E 63
Query: 304 FREIFSEIMVTKETSDLQYRTENSTPCFTELLKCSCVRGRYPDRLVTLWEEFAKTKKSYN 363
+++ ++ V +SD Y ++
Sbjct: 64 QKQLLMDLDVVMRSSDCPYIV------------------QF------------------- 86
Query: 364 DHPSMFEEDQIFIILELKNGGNDS------GDIKYRSPNQTYAMIL-QVVFSLAVAEVEL 416
+ ++F E +I +EL + D + P + I V +L + L
Sbjct: 87 -YGALFREGDCWICMELMSTSFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLKENL 145
Query: 417 EFEHRDLHMSNILV 430
+ HRD+ SNIL+
Sbjct: 146 KIIHRDIKPSNILL 159
>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal
transduction, acid starvation, starvation stress
response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A*
1zyd_A* 1zyc_A* 1zxe_A
Length = 303
Score = 35.0 bits (81), Expect = 0.054
Identities = 34/212 (16%), Positives = 70/212 (33%), Gaps = 68/212 (32%)
Query: 267 KKIGEGVYGEVFKLNNS------VIKIMPIEGDQSVNGEEQKKFREIFSEIMVTKETSDL 320
+G+G +G+V K N+ IK + ++K I SE+M+
Sbjct: 12 AVLGQGAFGQVVKARNALDSRYYAIKKIRH---------TEEKLSTILSEVMLLAS---- 58
Query: 321 QYRTENSTPCFTELLKCSCVRGRYPDRLVTLWEEFAKTKKSYNDHPSMFEEDQIFIILEL 380
L V V + + + + ++ ++ +FI +E
Sbjct: 59 --------------LNHQYV--------VRYYAAWLERRNFVKPMTAVKKKSTLFIQMEY 96
Query: 381 KNGGNDSGDIK----YRSPNQTYAMILQVVFSLAVAEV-ELEFEHRDLHMSNILVLQTDQ 435
G I + ++ + + Q++ A++ + HRDL NI
Sbjct: 97 CENGTLYDLIHSENLNQQRDEYWRLFRQIL--EALSYIHSQGIIHRDLKPMNIF------ 148
Query: 436 DESSFTLDDTHYAMKTAGVQVTIIDFTISRCF 467
+D++ V I DF +++
Sbjct: 149 ------IDESR--------NVKIGDFGLAKNV 166
>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase,
alternative splicing, ATP-binding, chromosome partition,
differentiation, mRNA processing; 1.73A {Homo sapiens}
PDB: 1wbp_A* 3beg_A* 2x7g_A*
Length = 397
Score = 34.5 bits (79), Expect = 0.083
Identities = 18/108 (16%), Positives = 30/108 (27%), Gaps = 6/108 (5%)
Query: 389 DIKYRSPNQTY------AMILQVVFSLAVAEVELEFEHRDLHMSNILVLQTDQDESSFTL 442
+S Q +I QV+ L + H D+ NIL+ +Q
Sbjct: 133 KWIIKSNYQGLPLPCVKKIIQQVLQGLDYLHTKCRIIHTDIKPENILLSVNEQYIRRLAA 192
Query: 443 DDTHYAMKTAGVQVTIIDFTISRCFVGEKICYYDLSQDEELFEGEGDY 490
+ T + A T + + E+L D
Sbjct: 193 EATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADL 240
>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism,
metal-binding, cell cycle kinase, mitosis, cytoplasm,
magnesium, transferase; 2.10A {Homo sapiens} PDB:
2wqn_A*
Length = 310
Score = 34.2 bits (79), Expect = 0.099
Identities = 37/191 (19%), Positives = 61/191 (31%), Gaps = 76/191 (39%)
Query: 267 KKIGEGVYGEVFKLNNS------VIKIMPIEGDQSVNGEEQKKFREIFSEIMVTKETSDL 320
KKIG G + EV++ +K + I K + EI
Sbjct: 38 KKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMD-----AKARADCIKEI--------- 83
Query: 321 QYRTENSTPCFTELLKCSCVRGRYPDRLVTLWEEFAKTKKSYNDHP-------SMFEEDQ 373
+LLK +L +HP S E+++
Sbjct: 84 ------------DLLK----------QL---------------NHPNVIKYYASFIEDNE 106
Query: 374 IFIILELKNGGNDSGDIKYRSPNQTY---AMILQVVFSLAVAEVELEF------EHRDLH 424
+ I+LEL + G+ S IK+ + + + L A LE HRD+
Sbjct: 107 LNIVLELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSA---LEHMHSRRVMHRDIK 163
Query: 425 MSNILVLQTDQ 435
+N+ + T
Sbjct: 164 PANVFITATGV 174
>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET:
824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A*
3cr0_A* 2in6_A* 2io6_A* 2z2w_A*
Length = 289
Score = 33.8 bits (78), Expect = 0.13
Identities = 36/249 (14%), Positives = 63/249 (25%), Gaps = 86/249 (34%)
Query: 253 SFEDRYPSSALKNCKKIGEGVYGEVFKLNNS------VIKIMPIEGDQSVNGEEQKKFRE 306
+ + +KIG G +G VFK IK SV +EQ RE
Sbjct: 8 RYTTEF-----HELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSV--DEQNALRE 60
Query: 307 IFSEIMVTKETSDLQYRTENSTPCFTELLKCSCVRGRYPDRLVTLWEEFAKTKKSYNDHP 366
+ H
Sbjct: 61 V-------------------------YAHAVLG------------------------QHS 71
Query: 367 -------SMFEEDQIFIILELKNGGNDSGDIKYRSPNQTY---AMILQVVFSLAVAEVEL 416
+ E+D + I E NGG+ + I +Y A + ++ + L
Sbjct: 72 HVVRYFSAWAEDDHMLIQNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRG---L 128
Query: 417 EF------EHRDLHMSNILVLQTDQDESSFTLDDTHYAMKTAGVQVTIIDFTISRCFVGE 470
+ H D+ SNI + ++ + + + V I D
Sbjct: 129 RYIHSMSLVHMDIKPSNIF-ISRTSIPNAASEEGDEDDWASNKVMFKIGDLGHVTRISSP 187
Query: 471 KI----CYY 475
++ +
Sbjct: 188 QVEEGDSRF 196
>3an0_A Dual specificity mitogen-activated protein kinase; auto inhibition
state, activation helix, serine/threonine-PR kinase;
HET: ANK; 2.60A {Homo sapiens} PDB: 3vn9_A*
Length = 340
Score = 33.5 bits (77), Expect = 0.15
Identities = 30/186 (16%), Positives = 63/186 (33%), Gaps = 57/186 (30%)
Query: 257 RYPSSALKNCKKIGEGVYGEVFKLNNSV------IKIMPIEGDQSVNGEEQKKFREIFSE 310
+ L+ ++G G YG V K+ + +K + + +EQK + +
Sbjct: 47 EVKADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNS----QEQK---RLLMD 99
Query: 311 IMVTKETSDLQYRTENSTPCFTELLKCSCVRGRYPDRLVTLWEEFAKTKKSYNDHPSMFE 370
+ ++ T D + + + ++F
Sbjct: 100 LDISMRTVDCPF-----------TVTF---------------------------YGALFR 121
Query: 371 EDQIFIILELKNGGNDSGDIKYRSPNQTY------AMILQVVFSLAVAEVELEFEHRDLH 424
E ++I +EL + D + QT + + +V +L +L HRD+
Sbjct: 122 EGDVWICMELMDTSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSKLSVIHRDVK 181
Query: 425 MSNILV 430
SN+L+
Sbjct: 182 PSNVLI 187
>3fme_A Dual specificity mitogen-activated protein kinase; active mutant,
structural genomics consortium, SCG, binding,
nucleotide-binding, phosphoprotein; HET: STU; 2.26A
{Homo sapiens} PDB: 3enm_A
Length = 290
Score = 33.4 bits (77), Expect = 0.17
Identities = 31/180 (17%), Positives = 61/180 (33%), Gaps = 57/180 (31%)
Query: 263 LKNCKKIGEGVYGEVFKL----NNSV--IKIMPIEGDQSVNGEEQKKFREIFSEIMVTKE 316
L+ ++G G YG V K+ + + +K + + +EQK + ++ ++
Sbjct: 9 LEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNS----QEQK---RLLMDLDISMR 61
Query: 317 TSDLQYRTENSTPCFTELLKCSCVRGRYPDRLVTLWEEFAKTKKSYNDHPSMFEEDQIFI 376
T D + + + ++F E ++I
Sbjct: 62 TVDCPF-----------TVTF---------------------------YGALFREGDVWI 83
Query: 377 ILELKNGGNDS-----GDIKYRSPNQTYAMIL-QVVFSLAVAEVELEFEHRDLHMSNILV 430
+EL + D D P I +V +L +L HRD+ SN+L+
Sbjct: 84 CMELMDTSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSKLSVIHRDVKPSNVLI 143
>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1;
protein-nucleotide complex, ATP-binding, endoplasmic
reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces
cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A*
3sdj_A*
Length = 434
Score = 33.6 bits (77), Expect = 0.19
Identities = 24/128 (18%), Positives = 48/128 (37%), Gaps = 26/128 (20%)
Query: 364 DHPSM-----FEEDQ--IFIILEL---------KNGGNDSGDIKYRSPNQTYAMILQVVF 407
DHP++ E ++I LEL ++ ++K + +++ Q+
Sbjct: 67 DHPNVIRYYCSETTDRFLYIALELCNLNLQDLVESKNVSDENLKLQKEYNPISLLRQIA- 125
Query: 408 SLAVAEV-ELEFEHRDLHMSNILVLQTDQDESSFTLDDTHYAMKTAGVQVTIIDFTISRC 466
VA + L+ HRDL NILV + + + + + I DF + +
Sbjct: 126 -SGVAHLHSLKIIHRDLKPQNILVSTSSRFTADQQTGAENLRIL-------ISDFGLCKK 177
Query: 467 FVGEKICY 474
+ +
Sbjct: 178 LDSGQSSF 185
>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant,
catalytic domain, synthetic inhibitor, TRAN transferase
inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB:
4g34_A*
Length = 299
Score = 33.1 bits (76), Expect = 0.22
Identities = 34/177 (19%), Positives = 60/177 (33%), Gaps = 49/177 (27%)
Query: 267 KKIGEGVYGEVFKLNNS------VIKIMPIEGDQSVNGEEQKKFREIFSEIMVTKETSDL 320
+ +G G +G VF+ N IK + + + +K RE+ + + + L
Sbjct: 11 QCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNREL---AREKVMREV--KAL-----AKL 60
Query: 321 QYRTENSTPCFTELLKCSCVRGRYPDRLVTLWEEFAKTKKSYNDHPSMFEEDQIFIILEL 380
++ V RY + W E K + + ++I ++L
Sbjct: 61 EH--PG------------IV--RYFNA----WLE----KNTTEKLQPSSPKVYLYIQMQL 96
Query: 381 KNGG------NDSGDIKYRSPNQTYAMILQVVFSLAVAEV-ELEFEHRDLHMSNILV 430
N I+ R + + LQ+ AV + HRDL SNI
Sbjct: 97 CRKENLKDWMNGRCTIEERERSVCLHIFLQIA--EAVEFLHSKGLMHRDLKPSNIFF 151
>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase,
transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A*
3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A*
3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A*
2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A*
Length = 289
Score = 33.0 bits (76), Expect = 0.23
Identities = 13/62 (20%), Positives = 31/62 (50%), Gaps = 9/62 (14%)
Query: 259 PSSALKNCKKIGEGVYGEVFK--LNNSV-IKIMPIEGDQSVNGEEQKKFREIFSEIMVTK 315
P + ++IG G +G V+K + V +K++ + ++ + F+ +E+ V +
Sbjct: 22 PDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLN---VTAPTPQQLQAFK---NEVGVLR 75
Query: 316 ET 317
+T
Sbjct: 76 KT 77
>3lb7_A RAF proto-oncogene serine/threonine-protein kinas; kinase domain,
alternative splicing, ATP-binding, disease MU kinase,
metal-binding; 4.00A {Homo sapiens} PDB: 3omv_A*
Length = 307
Score = 33.1 bits (76), Expect = 0.23
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 9/62 (14%)
Query: 259 PSSALKNCKKIGEGVYGEVFK--LNNSV-IKIMPIEGDQSVNGEEQKKFREIFSEIMVTK 315
+S + +IG G +G V+K + V +KI+ + E+ + FR +E+ V +
Sbjct: 34 EASEVMLSTRIGSGSFGTVYKGKWHGDVAVKILKV---VDPTPEQFQAFR---NEVAVLR 87
Query: 316 ET 317
+T
Sbjct: 88 KT 89
>3q4u_A Activin receptor type-1; structural genomics consortium, SGC,
protein kinase, transfe; HET: LDN FLC; 1.82A {Homo
sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*
Length = 301
Score = 32.7 bits (75), Expect = 0.26
Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
Query: 257 RYPSSALKNCKKIGEGVYGEVFK---LNNSV-IKIMPIEGDQSVNGEEQKKFREIFSEIM 312
R + + + +G+G YGEV++ +V +KI ++S E E+++ +M
Sbjct: 4 RTVARDITLLECVGKGRYGEVWRGSWQGENVAVKIFSSRDEKSWFRE-----TELYNTVM 58
Query: 313 V 313
+
Sbjct: 59 L 59
>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET:
ATP; 3.46A {Homo sapiens}
Length = 319
Score = 32.3 bits (74), Expect = 0.37
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 9/62 (14%)
Query: 259 PSSALKNCKKIGEGVYGEVFK--LNNSV-IKIMPIEGDQSVNGEEQKKFREIFSEIMVTK 315
P L+ + IG+G +G+V+ + V I+++ IE D N ++ K F+ E+M +
Sbjct: 31 PFEQLEIGELIGKGRFGQVYHGRWHGEVAIRLIDIERD---NEDQLKAFK---REVMAYR 84
Query: 316 ET 317
+T
Sbjct: 85 QT 86
>3uqc_A Probable conserved transmembrane protein; structural genomics, TB
structural genomics consortium, TBSG fold, FHAA,
transferase; 2.26A {Mycobacterium tuberculosis} PDB:
3oun_B* 3otv_A 3ouk_A
Length = 286
Score = 32.0 bits (73), Expect = 0.40
Identities = 9/62 (14%), Positives = 16/62 (25%), Gaps = 2/62 (3%)
Query: 370 EEDQIFIILELKNGGNDSGDIKYR-SPNQTYAMILQVVFSLAVAEVELEFEHRDLHMSNI 428
++ E GG+ SP + + + A H S +
Sbjct: 102 TRAGGLVVAEWIRGGSLQEVADTSPSPVGAIRAMQSLAAAADAAH-RAGVALSIDHPSRV 160
Query: 429 LV 430
V
Sbjct: 161 RV 162
>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding,
nucleotide serine/threonine-protein kinase, transferase,
signaling Pro; HET: ACP; 1.80A {Dictyostelium
discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*
Length = 287
Score = 31.9 bits (73), Expect = 0.43
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 7/53 (13%)
Query: 267 KKIGEGVYGEVFK----LNNSV--IKIMPIEGDQSVNGEEQKKFREIFSEIMV 313
K+IG+G +G V K + SV IK + I GD E +KF+E E+ +
Sbjct: 25 KQIGKGGFGLVHKGRLVKDKSVVAIKSL-ILGDSEGETEMIEKFQEFQREVFI 76
>3soc_A Activin receptor type-2A; structural genomics consortium, SGC,
transferase, protein KI; HET: GVD; 1.95A {Homo sapiens}
PDB: 3q4t_A* 2qlu_A*
Length = 322
Score = 31.6 bits (72), Expect = 0.57
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 9/59 (15%)
Query: 259 PSSALKNCKKIGEGVYGEVFKL---NNSV-IKIMPIEGDQSVNGEEQKKFREIFSEIMV 313
S L+ + G +G V+K N V +KI PI+ QS E E++S +
Sbjct: 22 QSMPLQLLEVKARGRFGCVWKAQLLNEYVAVKIFPIQDKQSWQNE-----YEVYSLPGM 75
>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural
genomics consortium, SGC, PR kinase,
transferase-antibiotic complex; HET: STU GOL; 1.65A
{Homo sapiens}
Length = 310
Score = 31.5 bits (72), Expect = 0.61
Identities = 12/59 (20%), Positives = 27/59 (45%), Gaps = 10/59 (16%)
Query: 259 PSSALKNCKKIGEGVYGEVFK----LNNSVIKIMPIEGDQSVNGEEQKKF-REIFSEIM 312
S L + + +G+G +G+ K V+ + + + E Q+ F +E+ ++M
Sbjct: 8 RPSDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKEL---IRFDEETQRTFLKEV--KVM 61
>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural
genomics, structural genomics consortium, ATP-binding,
disease mutation; HET: ADP; 2.35A {Homo sapiens}
Length = 336
Score = 31.7 bits (72), Expect = 0.62
Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 9/55 (16%)
Query: 263 LKNCKKIGEGVYGEVFK--LNNSV--IKIMPIEGDQSVNGEEQKKFREIFSEIMV 313
LK + IG G YG V+K L+ +K+ Q+ + I+ ++
Sbjct: 15 LKLLELIGRGRYGAVYKGSLDERPVAVKVFSFANRQNF-----INEKNIYRVPLM 64
>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor,
transferase-transferase inhibitor CO; HET: ANP; 1.30A
{Homo sapiens} PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A*
3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A
3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3mb7_A* 3mb6_A*
3owj_A* 3owk_A* ...
Length = 330
Score = 31.5 bits (72), Expect = 0.72
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 22/65 (33%)
Query: 252 VSFE--DRYPSSALKNCKKIGEGVYGEVFKLNNS------VIKIM-PIEGDQSVNGEEQK 302
V + D Y + +K+G G Y EVF+ N V+KI+ P+ +++K
Sbjct: 30 VEWGNQDDY-----QLVRKLGRGKYSEVFEAINITNNEKVVVKILKPV--------KKKK 76
Query: 303 KFREI 307
REI
Sbjct: 77 IKREI 81
>3mdy_A Bone morphogenetic protein receptor type-1B; complex
(isomerase-protein kinase), receptor serine/threonin
structural genomics consortium, SGC; HET: LDN; 2.05A
{Homo sapiens}
Length = 337
Score = 31.2 bits (71), Expect = 0.77
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 13/63 (20%)
Query: 257 RYPSSALKNCKKIGEGVYGEVFK---LNNSV-IKIMPIEGDQSVNGEEQKKFREIFSEIM 312
R + ++ K+IG+G YGEV+ V +K+ EE FRE +EI
Sbjct: 33 RTIAKQIQMVKQIGKGRYGEVWMGKWRGEKVAVKVFFTT-------EEASWFRE--TEIY 83
Query: 313 VTK 315
T
Sbjct: 84 QTV 86
>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase;
HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB:
1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A*
1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A*
3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...
Length = 420
Score = 31.2 bits (71), Expect = 0.92
Identities = 13/73 (17%), Positives = 25/73 (34%), Gaps = 5/73 (6%)
Query: 207 RRSSSLSSTGDEDTLYETVLSSSLQYDDNEFCRKKILDICQQEDVVSFEDRYPSSALKNC 266
R++S + + S + D + ++ Q E Y +
Sbjct: 5 PRTTSFAESCKPVQQPSAFGSMKVSRDKDGSKVTTVVATPGQGPDRPQEVSY-----TDT 59
Query: 267 KKIGEGVYGEVFK 279
K IG G +G V++
Sbjct: 60 KVIGNGSFGVVYQ 72
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase,
phosphorylation, SH2, SH3, phosphotyrosine,
proto-oncogene, phosphotransferase; HET: PTR; 1.50A
{Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB:
1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B*
3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A*
3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Length = 452
Score = 31.3 bits (71), Expect = 0.93
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Query: 371 EDQIFIILELKNGGN-----DSGDIKYRSPNQTYAMILQVVFSLAVAEVELEFEHRDLHM 425
E+ I+I+ E + G+ KY Q M Q+ +A E + + HRDL
Sbjct: 250 EEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVE-RMNYVHRDLRA 308
Query: 426 SNILV 430
+NILV
Sbjct: 309 ANILV 313
>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding;
HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 3blh_A*
3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A*
Length = 351
Score = 31.1 bits (71), Expect = 0.95
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 9/32 (28%)
Query: 257 RYPSSALKNC---------KKIGEGVYGEVFK 279
+Y S C KIG+G +GEVFK
Sbjct: 4 QYDSVECPFCDEVSKYEKLAKIGQGTFGEVFK 35
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase,
transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7
Length = 535
Score = 31.4 bits (71), Expect = 0.98
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Query: 371 EDQIFIILELKNGGN-----DSGDIKYRSPNQTYAMILQVVFSLAVAEVELEFEHRDLHM 425
E+ I+I+ E + G+ KY Q M Q+ +A E + + HRDL
Sbjct: 333 EEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVE-RMNYVHRDLRA 391
Query: 426 SNILV 430
+NILV
Sbjct: 392 ANILV 396
>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase,
structural genomics CONS SGC, hemicholinium-3,
phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens}
PDB: 3lq3_A* 2ig7_A*
Length = 379
Score = 31.0 bits (69), Expect = 1.0
Identities = 13/86 (15%), Positives = 28/86 (32%)
Query: 363 NDHPSMFEEDQIFIILELKNGGNDSGDIKYRSPNQTYAMILQVVFSLAVAEVELEFEHRD 422
+ +F + ++ ++ + + L + F H D
Sbjct: 167 KEPHWLFGTMERYLKQIQDLPPTGLPEMNLLEMYSLKDEMGNLRKLLESTPSPVVFCHND 226
Query: 423 LHMSNILVLQTDQDESSFTLDDTHYA 448
+ NIL+L ++ S L D Y+
Sbjct: 227 IQEGNILLLSEPENADSLMLVDFEYS 252
>1i2k_A 4-amino-4-deoxychorismate lyase; pyridoxal phosphate, PABC; HET:
PLP; 1.79A {Escherichia coli} SCOP: e.17.1.1 PDB:
1et0_A* 1i2l_A*
Length = 269
Score = 30.6 bits (70), Expect = 1.2
Identities = 7/52 (13%), Positives = 18/52 (34%), Gaps = 9/52 (17%)
Query: 239 RKKILDICQQEDVVSFEDRYPSSALKNCKKIGEGVYGEVFKLNNSVIKIMPI 290
R+ + + Q E + E+ + N+++ +MP+
Sbjct: 202 RQFCIRLLAQSSYQLVEVQASLEESLQAD--------EMV-ICNALMPVMPV 244
>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein
kinase), receptor serine/threonine kinase; 2.60A {Homo
sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A*
3kcf_A*
Length = 342
Score = 30.9 bits (70), Expect = 1.2
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 9/60 (15%)
Query: 254 FEDRYPSSALKNCKKIGEGVYGEVFK---LNNSV-IKIMPIEGDQSVNGEEQKKFREIFS 309
R + + + IG+G +GEV++ V +KI ++S E EI+
Sbjct: 35 LVQRTIARTIVLQESIGKGRFGEVWRGKWRGEEVAVKIFSSREERSWFRE-----AEIYQ 89
>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat,
ATP-binding, cell junction, cell membrane,
integrin-binding protein, membrane, nucleotide- binding;
1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A*
Length = 271
Score = 30.7 bits (70), Expect = 1.2
Identities = 10/48 (20%), Positives = 21/48 (43%), Gaps = 7/48 (14%)
Query: 263 LKNCKKIGEGVYGEVFK---LNNSV-IKIMPIEGDQSVNGEEQKKFRE 306
L K+ E GE++K N + +K++ + + + + F E
Sbjct: 12 LNFLTKLNENHSGELWKGRWQGNDIVVKVLK---VRDWSTRKSRDFNE 56
>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas;
spindle assembly checkpoint, mitosis, kinase,
activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo
sapiens}
Length = 365
Score = 30.7 bits (69), Expect = 1.5
Identities = 13/108 (12%), Positives = 34/108 (31%), Gaps = 16/108 (14%)
Query: 365 HPSMFEEDQIFIILELKNGG------NDSGDIKYRSPNQTYAMILQVVFSLAVAEV-ELE 417
+ + ++ ++ EL + G N + + Q + + + +V + E
Sbjct: 133 YSAHLFQNGSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVHDCE 192
Query: 418 FEHRDLHMSNILVLQTDQDESSFTLDDTHYAMKTAGVQVTIIDFTISR 465
H D+ N ++ ++ + +ID S
Sbjct: 193 IIHGDIKPDNFILGNGFLEQDDEDDLSAG---------LALIDLGQSI 231
>3gxj_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline,
aortic aneurysm, ATP-binding, craniosynostosis, disease
mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens}
PDB: 1vjy_A* 3gxl_A* 3hmm_A* 2wot_A* 2wou_A* 1py5_A*
1rw8_A*
Length = 303
Score = 30.4 bits (69), Expect = 1.5
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 13/57 (22%)
Query: 263 LKNCKKIGEGVYGEVFK---LNNSV-IKIMPIEGDQSVNGEEQKKFREIFSEIMVTK 315
+ + IG+G +GEV++ V +KI EE+ FRE +EI T
Sbjct: 5 IVLQESIGKGRFGEVWRGKWRGEEVAVKIFSSR-------EERSWFRE--AEIYQTV 52
>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage
kinase, MLK family, MLK1 and MLK3 subtype selective
inhibitors; HET: VIN; 2.60A {Homo sapiens}
Length = 271
Score = 30.3 bits (69), Expect = 1.6
Identities = 10/58 (17%), Positives = 27/58 (46%), Gaps = 6/58 (10%)
Query: 259 PSSALKNCKKIGEGVYGEVFK---LNNSV-IKIMPIEGDQSVNGEEQKKFREIFSEIM 312
+ L + IG G +G+V++ + + V +K + D+ ++ + +E ++
Sbjct: 5 DFAELTLEEIIGIGGFGKVYRAFWIGDEVAVKAARHDPDEDISQTIENVRQEA--KLF 60
Score = 28.8 bits (65), Expect = 3.9
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 12/46 (26%)
Query: 420 HRDLHMSNILVLQTDQDESSFTLDDTHYAMKTAGVQVTIIDFTISR 465
HRDL SNIL+ + D ++ +K I DF ++R
Sbjct: 131 HRDLKSSNILI-----LQKVENGDLSNKILK-------ITDFGLAR 164
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.7 bits (66), Expect = 1.7
Identities = 5/39 (12%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 38 ESNEEDEMYYSQTEDSVIEAHKKSVRFLDETLKKEKTDN 76
++ ++ E + + + +E +K + R D+ ++ +
Sbjct: 115 KAKKDLEEWNQRQSEQ-VEKNKINNRIADKAFYQQPDAD 152
>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent
kinase, cell cycle control, alpha/beta, complex
(inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP:
d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B*
2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B
2w9f_B
Length = 326
Score = 30.3 bits (69), Expect = 1.8
Identities = 9/12 (75%), Positives = 11/12 (91%)
Query: 268 KIGEGVYGEVFK 279
+IGEG YG+VFK
Sbjct: 18 EIGEGAYGKVFK 29
>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle,
phosphorylation, ATP-BIN cell division, disease
mutation, kinase; 3.00A {Homo sapiens}
Length = 308
Score = 29.8 bits (68), Expect = 1.9
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 268 KIGEGVYGEVFK 279
+IG G YG V+K
Sbjct: 16 EIGVGAYGTVYK 27
>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci
inhibitory kinase; structural genomics, structural
genomics consortium, SGC; 1.70A {Homo sapiens}
Length = 311
Score = 30.0 bits (68), Expect = 2.0
Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 8/47 (17%)
Query: 267 KKIGEGVYGEVFKLNNS------VIKIMPIEGDQSVNGEEQKKFREI 307
++G G YGEVFK+ + +K + +K E+
Sbjct: 63 SRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPK--DRARKLAEV 107
>3rgf_A Cyclin-dependent kinase 8; protein kinase complex,
transferase,transcription; HET: BAX; 2.20A {Homo
sapiens}
Length = 405
Score = 30.2 bits (68), Expect = 2.2
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 10/46 (21%)
Query: 234 DNEFCRKKILDICQQEDVVSFEDRYPSSALKNCKKIGEGVYGEVFK 279
D +F K + + ED+ +E K+G G YG V+K
Sbjct: 4 DYDFKVKLSSERERVEDLFEYEGC----------KVGRGTYGHVYK 39
>3niz_A Rhodanese family protein; structural genomics, structural genomics
consortium, SGC, phosphotransferase, cyclin dependent
kinase; HET: ADP; 2.40A {Cryptosporidium parvum} PDB:
2qkr_A*
Length = 311
Score = 29.8 bits (68), Expect = 2.2
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 247 QQEDVVSFEDRYPSSALKN---CKKIGEGVYGEVFK 279
E+ Y ++ +K+GEG YG V+K
Sbjct: 4 HHHHSSGRENLYFQGLMEKYQKLEKVGEGTYGVVYK 39
>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85;
cyclin-dependent kinase, signaling protein,transfera
cycle complex; HET: MES AGS; 2.90A {Saccharomyces
cerevisiae} PDB: 2pk9_A*
Length = 317
Score = 29.5 bits (67), Expect = 2.7
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 268 KIGEGVYGEVFK 279
K+G G Y V+K
Sbjct: 12 KLGNGTYATVYK 23
>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces
cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A*
1how_A 2jd5_A
Length = 373
Score = 29.7 bits (67), Expect = 2.7
Identities = 12/72 (16%), Positives = 21/72 (29%), Gaps = 15/72 (20%)
Query: 404 QVVFSLAVAEVELEFEHRDLHMSNILVLQTDQDESSFTLDDTHYAMKTAGVQVTIIDFTI 463
Q++ L H D+ N+L+ D E+ + I D
Sbjct: 139 QLLLGLDYMHRRCGIIHTDIKPENVLMEIVDSPENLIQ--------------IKIADLG- 183
Query: 464 SRCFVGEKICYY 475
+ C+ E
Sbjct: 184 NACWYDEHYTNS 195
>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET:
D15; 2.40A {Homo sapiens}
Length = 311
Score = 29.5 bits (67), Expect = 2.9
Identities = 10/13 (76%), Positives = 10/13 (76%)
Query: 267 KKIGEGVYGEVFK 279
KIGEG YG VFK
Sbjct: 9 GKIGEGSYGVVFK 21
>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase,
quinoxaline, alternative splicing, ATP-binding,
chromosomal rearrangement; HET: IHX; 1.40A {Homo
sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A*
2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A*
2wgj_A* 3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A*
3ctj_A* ...
Length = 298
Score = 29.5 bits (67), Expect = 2.9
Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 15/80 (18%)
Query: 364 DHP--------SMFEEDQIFIILELKNGGNDSGDIKYRSPNQTYAMILQVVFSLAVAE-- 413
HP + E ++L G+ I+ + N T ++ F L VA+
Sbjct: 84 SHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIG--FGLQVAKGM 141
Query: 414 ---VELEFEHRDLHMSNILV 430
+F HRDL N ++
Sbjct: 142 KYLASKKFVHRDLAARNCML 161
>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding,
serine/threonine-protein kinase, transferase; 1.85A
{Giardia lamblia} PDB: 3gc0_A*
Length = 329
Score = 29.5 bits (67), Expect = 2.9
Identities = 9/12 (75%), Positives = 11/12 (91%)
Query: 268 KIGEGVYGEVFK 279
K+GEG YGEV+K
Sbjct: 41 KLGEGTYGEVYK 52
>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET:
DKI; 1.53A {Homo sapiens}
Length = 331
Score = 29.5 bits (67), Expect = 2.9
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 267 KKIGEGVYGEVFK 279
+GEG YG V K
Sbjct: 31 GLVGEGSYGMVMK 43
>1ob3_A PFPK5, cell division control protein 2 homolog; transferase,
serine/threonine-protein kinase, ATP-binding,
phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP:
d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A
Length = 288
Score = 29.4 bits (67), Expect = 2.9
Identities = 9/12 (75%), Positives = 10/12 (83%)
Query: 268 KIGEGVYGEVFK 279
KIGEG YG V+K
Sbjct: 9 KIGEGTYGVVYK 20
>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2,
phosphorylation, transferase; HET: STU; 2.50A
{Arabidopsis thaliana} PDB: 3ppz_A*
Length = 309
Score = 29.6 bits (67), Expect = 2.9
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 10/59 (16%)
Query: 259 PSSALKNCKKIGEGVYGEVFK---LNNSV-IKIMPIEGDQSVNGEEQKKF-REIFSEIM 312
P L +KIG G +G V + + V +KI+ +Q + E +F RE+ IM
Sbjct: 35 PWCDLNIKEKIGAGSFGTVHRAEWHGSDVAVKILM---EQDFHAERVNEFLREV--AIM 88
>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal
transduction, GRB2, SHC, ATP-binding, glycoprotein,
membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7
Length = 373
Score = 29.3 bits (66), Expect = 3.2
Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 15/80 (18%)
Query: 364 DHP--------SMFEEDQIFIILELKNGGNDSGDIKYRSPNQTYAMILQVVFSLAVAE-- 413
HP + E ++L G+ I+ + N T ++ F L VA+
Sbjct: 148 SHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIG--FGLQVAKGM 205
Query: 414 ---VELEFEHRDLHMSNILV 430
+F HRDL N ++
Sbjct: 206 KFLASKKFVHRDLAARNCML 225
>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation,
protein-protein interaction, PR kinase, cell cycle,
transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP:
d.144.1.7
Length = 346
Score = 29.5 bits (67), Expect = 3.3
Identities = 5/13 (38%), Positives = 8/13 (61%)
Query: 267 KKIGEGVYGEVFK 279
+GEG + V+K
Sbjct: 16 DFLGEGQFATVYK 28
>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase,
cell cycle, inhibition, cyclin-dependent kinase, cancer,
ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A*
2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A*
1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A*
1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...
Length = 299
Score = 29.0 bits (66), Expect = 3.4
Identities = 9/12 (75%), Positives = 10/12 (83%)
Query: 268 KIGEGVYGEVFK 279
KIGEG YG V+K
Sbjct: 10 KIGEGTYGVVYK 21
>4e5w_A Tyrosine-protein kinase JAK1; kinase domain,
transferase-transferase inhibit complex; HET: PTR 0NT;
1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A*
3eyh_A*
Length = 302
Score = 29.2 bits (66), Expect = 3.5
Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 244 DICQQEDVVSFEDR--YPSSALKNCKKIGEGVYGEVFK 279
DI ++ + D + LK + +GEG +G+V
Sbjct: 2 DIVSEKKPATEVDPTHFEKRFLKRIRDLGEGHFGKVEL 39
>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase
inhibitor complex, transferase-transferase activator
complex; HET: 3O0; 1.95A {Homo sapiens} PDB: 1unh_A*
1ung_A* 1unl_A* 1h4l_A
Length = 292
Score = 29.0 bits (66), Expect = 3.9
Identities = 10/12 (83%), Positives = 10/12 (83%)
Query: 268 KIGEGVYGEVFK 279
KIGEG YG VFK
Sbjct: 9 KIGEGTYGTVFK 20
>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding,
transfera phosphorylation, transmembrane,
tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}
Length = 325
Score = 29.2 bits (66), Expect = 4.0
Identities = 11/46 (23%), Positives = 16/46 (34%), Gaps = 4/46 (8%)
Query: 238 CRKKILDICQQED----VVSFEDRYPSSALKNCKKIGEGVYGEVFK 279
+ + E+ SF +S + K IG G GEV
Sbjct: 22 EPQFYAEPHTYEEPGRAGRSFTREIEASRIHIEKIIGSGDSGEVCY 67
>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment,
structural genomics, mutant, structural genomics
consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB:
2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A
2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A*
2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...
Length = 373
Score = 28.9 bits (65), Expect = 4.6
Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 4/46 (8%)
Query: 238 CRKKILDICQQED----VVSFEDRYPSSALKNCKKIGEGVYGEVFK 279
+ +D ED V F ++ + K +G G +GEV
Sbjct: 18 GLRTFVDPHTFEDPTQTVHEFAKELDATNISIDKVVGAGEFGEVCS 63
>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase,
phosphorylation, staurosporine, transferase; HET: STU;
2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*
Length = 278
Score = 28.7 bits (65), Expect = 5.0
Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 6/66 (9%)
Query: 370 EEDQIFIILELKNGGN-----DSGDIKYRSPNQTYAMILQVVFSLAVAEVELEFEHRDLH 424
E+ ++I+ E G+ S + L V ++ E F HRDL
Sbjct: 86 EKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLE-GNNFVHRDLA 144
Query: 425 MSNILV 430
N+LV
Sbjct: 145 ARNVLV 150
>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP
binding, phosphorylation, intracellular,
transferase-transferase inhibitor complex; HET: IAQ;
1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A*
3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A*
3mj1_A* 3mj2_A*
Length = 267
Score = 28.7 bits (65), Expect = 5.2
Identities = 19/68 (27%), Positives = 25/68 (36%), Gaps = 9/68 (13%)
Query: 369 FEEDQIFIILELKNGGNDSGDIKY-RSPNQTYAMILQVVFSLAVAE--VELE---FEHRD 422
E+ I ++ E G Y R+ +A + L V E LE HRD
Sbjct: 73 LEQAPICLVTEFMEHGCL---SDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACVIHRD 129
Query: 423 LHMSNILV 430
L N LV
Sbjct: 130 LAARNCLV 137
>1qft_A Protein (female-specific histamine binding protein 2); lipocalin,
ligand binding protein; 1.25A {Rhipicephalus
appendiculatus} SCOP: b.60.1.1 PDB: 1qfv_A 3gaq_A 3g7x_A
Length = 175
Score = 28.3 bits (62), Expect = 5.2
Identities = 9/59 (15%), Positives = 19/59 (32%), Gaps = 3/59 (5%)
Query: 289 PIEGDQSVNGEEQKKFREIFSEIMVTKETSDLQYRTENSTPCFTELLKCSCVRGRYPDR 347
P D++ NG Q ++ + + + T + P + C V +
Sbjct: 3 PDWADEAANGAHQDAWKSLK---ADVENVYYMVKATYKNDPVWGNDFTCVGVMANDVNE 58
>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase
activator complex; HET: ADN; 2.00A {Homo sapiens}
Length = 307
Score = 28.5 bits (64), Expect = 5.7
Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 12/54 (22%)
Query: 259 PSSALKNCKKIGEGVYGEVFK---LNNSV-IKIMPIEGDQSVNGEEQKKF-REI 307
++ + +G G +G V K V IK + E E+K F E+
Sbjct: 6 DYKEIEVEEVVGRGAFGVVCKAKWRAKDVAIKQIESE-------SERKAFIVEL 52
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein
serine/threonine kinase, S based drug design, MAP3K14,
transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A*
4g3c_A 4dn5_A*
Length = 336
Score = 28.5 bits (64), Expect = 5.8
Identities = 10/50 (20%), Positives = 23/50 (46%), Gaps = 6/50 (12%)
Query: 252 VSFEDRYPSSALKNCKKIGEGVYGEVFKLNNSV------IKIMPIEGDQS 295
V +E R + + ++G G +GEV ++ + +K + +E +
Sbjct: 49 VDYEYREEVHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVFRV 98
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase,
integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB:
2j0k_A*
Length = 656
Score = 28.7 bits (64), Expect = 6.1
Identities = 14/92 (15%), Positives = 34/92 (36%), Gaps = 1/92 (1%)
Query: 188 CRSFVSYSEEFSSAVSFKSRRSSSLSSTGDEDTLYETVLSSSLQYDDNEFCRKKILDICQ 247
CR V+ + + K + S + + V S ++ + + + I +
Sbjct: 318 CR-LVNGATQSFIIRPQKEGERALPSIPKLANNEKQGVRSHTVSVSETDDYAEIIDEEDT 376
Query: 248 QEDVVSFEDRYPSSALKNCKKIGEGVYGEVFK 279
+ + ++ + IGEG +G+V +
Sbjct: 377 YTMPSTRDYEIQRERIELGRCIGEGQFGDVHQ 408
>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase;
HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7
Length = 333
Score = 28.4 bits (64), Expect = 6.2
Identities = 12/46 (26%), Positives = 16/46 (34%), Gaps = 4/46 (8%)
Query: 238 CRKKILDICQQED----VVSFEDRYPSSALKNCKKIGEGVYGEVFK 279
D V+ F S + K IG G +GEV+K
Sbjct: 17 TENLYFQGAMGSDPNQAVLKFTTEIHPSCVTRQKVIGAGEFGEVYK 62
>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo
sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A*
3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A*
3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A*
3ad6_A* 3kmm_A* 1qpd_A* ...
Length = 279
Score = 28.3 bits (64), Expect = 6.5
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Query: 371 EDQIFIILELKNGGN-----DSGDIKYRSPNQTYAMILQVVFSLAVAEVELEFEHRDLHM 425
++ I+II E G+ + + N+ M Q+ +A E E + HRDL
Sbjct: 79 QEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIE-ERNYIHRDLRA 137
Query: 426 SNILV 430
+NILV
Sbjct: 138 ANILV 142
>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase,
ATP binding, phosphoryla transferase; HET: ATP; 1.75A
{Homo sapiens} PDB: 4fvp_A* 4fvr_A*
Length = 289
Score = 28.0 bits (63), Expect = 7.1
Identities = 18/100 (18%), Positives = 34/100 (34%), Gaps = 15/100 (15%)
Query: 369 FEEDQIFIILELKNGGNDSGDIKYRSPNQTYAMILQVVFSLAVAEVELE---FEHRDLHM 425
D+ ++ E G+ +K L+V LA A LE H ++
Sbjct: 82 VCGDENILVQEFVKFGSLDTYLKKNKNCINILWKLEVAKQLAAAMHFLEENTLIHGNVCA 141
Query: 426 SNILVLQTDQDESSFTLDDTHYAMKTAGVQVTIIDFTISR 465
NIL+++ + ++ + + D IS
Sbjct: 142 KNILLIREEDRKTGNPP------------FIKLSDPGISI 169
>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase;
2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A*
1u54_A* 3eqr_A* 3eqp_B*
Length = 291
Score = 28.0 bits (63), Expect = 7.4
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 259 PSSALKNCKKIGEGVYGEVFK 279
L+ +K+G+G +G V +
Sbjct: 16 GEKDLRLLEKLGDGSFGVVRR 36
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha
& beta protein, PLP-dependent transferase, aminotransf
mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB:
2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Length = 425
Score = 28.4 bits (64), Expect = 7.5
Identities = 5/18 (27%), Positives = 12/18 (66%)
Query: 239 RKKILDICQQEDVVSFED 256
+K+I ++ ++ D + ED
Sbjct: 213 KKEIYELARKYDFLIIED 230
>3kmv_A Alpha-L-arabinofuranosidase B; protein:carboydrate interactions,
carbohydrate-binding modul trefoil fold, CBM42, sugar
binding protein; 1.80A {Clostridium thermocellum}
Length = 157
Score = 27.2 bits (60), Expect = 8.4
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 363 NDHPSMFEEDQIFIILELKNGGNDSGDIKYRSPNQTYAMILQVVFSLAVAEVELEFEHRD 422
ND S+F E F I+ G D I ++S N I + L + E+ E + +D
Sbjct: 82 NDGTSLFAESATFKIVP---GLADPSYISFQSYNFPTRYIRHYNYLLRLDEIVTELDRQD 138
>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2,
autoinhibitory, ATP-binding, nucleotide phosphorylation,
serine/threonine-protein kinase; 2.00A {Mus musculus}
PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A
Length = 342
Score = 27.6 bits (62), Expect = 9.8
Identities = 13/58 (22%), Positives = 18/58 (31%), Gaps = 16/58 (27%)
Query: 420 HRDLHMSNILVLQTDQDESSFTLDDTHYAMKTAGVQVTIIDFTISRCFVGEKICYYDL 477
HRDL SNIL + + S + I DF ++ E
Sbjct: 139 HRDLKPSNILYVDESGNPES----------------IRICDFGFAKQLRAENGLLMTP 180
>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting
of N- and C-lobes, transferase; 2.40A {Homo sapiens}
SCOP: d.144.1.7 PDB: 1xr0_A
Length = 370
Score = 27.7 bits (62), Expect = 9.9
Identities = 24/119 (20%), Positives = 38/119 (31%), Gaps = 25/119 (21%)
Query: 165 GKMWKRSLINNSIREQHKVSHKFC--RSFVSYSEEFSSAVSFKSR-RSSSLSSTGDEDTL 221
G + HK++ + R +E SS S R ++ S+ + +
Sbjct: 2 GSSHHHHHHSQDPPAVHKLTKRIPLRRQVTVSAESSSSMNSNTPLVRITTRLSSTADTPM 61
Query: 222 YETVLSSSLQYDDN-EFCRKKILDICQQEDVVSFEDRYPSSALKNCKKIGEGVYGEVFK 279
V L D EF R K+ L K +GEG +G+V
Sbjct: 62 LAGVSEYELPEDPKWEFPRDKL-------------------TLG--KPLGEGCFGQVVM 99
>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR;
3.30A {Ustilago maydis}
Length = 394
Score = 28.1 bits (63), Expect = 9.9
Identities = 11/25 (44%), Positives = 13/25 (52%), Gaps = 5/25 (20%)
Query: 255 EDRYPSSALKNCKKIGEGVYGEVFK 279
E Y NCK IG G +G VF+
Sbjct: 39 EIAY-----TNCKVIGNGSFGVVFQ 58
>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation,
transferase-transferas inhibitor complex; HET: SEP BX7;
1.80A {Homo sapiens}
Length = 319
Score = 27.8 bits (62), Expect = 10.0
Identities = 10/52 (19%), Positives = 19/52 (36%), Gaps = 11/52 (21%)
Query: 267 KKIGEGVYGEVFKLNNSV------IKIMPIEGDQSVNGEEQKKFREIFSEIM 312
+G+G VF+ + IK+ + S + RE E++
Sbjct: 15 DILGQGATANVFRGRHKKTGDLFAIKVFN---NISFLRPVDVQMREF--EVL 61
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.132 0.378
Gapped
Lambda K H
0.267 0.0672 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,306,749
Number of extensions: 484775
Number of successful extensions: 1520
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1484
Number of HSP's successfully gapped: 149
Length of query: 562
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 463
Effective length of database: 3,937,614
Effective search space: 1823115282
Effective search space used: 1823115282
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.0 bits)