Query psy9185
Match_columns 248
No_of_seqs 155 out of 678
Neff 4.4
Searched_HMMs 46136
Date Fri Aug 16 21:05:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9185.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9185hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3960|consensus 99.7 1E-17 2.3E-22 151.8 9.9 77 129-209 106-182 (284)
2 KOG4029|consensus 99.7 4.7E-17 1E-21 143.9 6.2 64 140-204 106-170 (228)
3 KOG3898|consensus 99.6 7.9E-16 1.7E-20 139.5 4.3 65 139-204 68-132 (254)
4 PF00010 HLH: Helix-loop-helix 99.5 2.5E-13 5.4E-18 95.4 7.4 54 143-196 1-55 (55)
5 KOG4395|consensus 99.4 4.9E-13 1.1E-17 121.7 6.0 63 140-203 171-233 (285)
6 cd00083 HLH Helix-loop-helix d 99.4 4.3E-12 9.3E-17 89.1 8.1 57 142-199 3-59 (60)
7 smart00353 HLH helix loop heli 99.3 2.3E-11 5E-16 84.0 7.4 52 148-200 1-52 (53)
8 KOG0561|consensus 99.1 9.5E-11 2.1E-15 109.3 7.0 56 140-197 57-112 (373)
9 KOG4447|consensus 99.1 3.8E-11 8.2E-16 102.7 3.1 65 141-207 76-140 (173)
10 KOG3910|consensus 98.9 5.2E-09 1.1E-13 102.9 9.1 64 139-202 522-585 (632)
11 KOG1319|consensus 98.3 1.2E-06 2.6E-11 77.7 5.7 60 143-202 62-124 (229)
12 KOG1318|consensus 98.2 1.6E-05 3.4E-10 77.3 12.5 62 141-202 231-292 (411)
13 KOG2483|consensus 97.6 0.00022 4.9E-09 64.7 8.2 61 140-202 56-117 (232)
14 KOG2588|consensus 97.1 0.0018 3.9E-08 68.4 8.6 58 142-202 275-332 (953)
15 KOG4304|consensus 97.1 0.00058 1.3E-08 62.5 4.1 58 143-200 32-93 (250)
16 KOG3561|consensus 96.6 0.0037 8E-08 65.4 5.8 56 143-198 20-75 (803)
17 KOG4447|consensus 96.4 0.0018 3.9E-08 56.1 2.0 56 143-200 21-77 (173)
18 PF01056 Myc_N: Myc amino-term 93.4 0.024 5.1E-07 54.1 0.1 46 42-88 239-294 (329)
19 PLN03217 transcription factor 93.1 0.2 4.3E-06 39.8 4.8 48 155-202 19-68 (93)
20 KOG3558|consensus 87.9 0.65 1.4E-05 48.5 4.4 52 150-202 53-104 (768)
21 KOG3559|consensus 65.9 5.9 0.00013 39.7 3.2 47 152-198 10-56 (598)
22 KOG3560|consensus 65.7 5.1 0.00011 41.3 2.8 48 157-204 39-89 (712)
23 PF11600 CAF-1_p150: Chromatin 33.3 64 0.0014 28.6 4.2 21 40-60 8-28 (216)
24 PF15459 RRP14: 60S ribosome b 21.7 88 0.0019 23.2 2.5 18 153-170 2-19 (64)
25 PF05687 DUF822: Plant protein 21.0 3.6E+02 0.0077 23.5 6.3 26 145-170 13-38 (150)
No 1
>KOG3960|consensus
Probab=99.73 E-value=1e-17 Score=151.78 Aligned_cols=77 Identities=42% Similarity=0.640 Sum_probs=67.2
Q ss_pred cccccCCCCccchHHhhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCcccc
Q psy9185 129 TTRCHRKISDSERDYKKTACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQCLLEYGPEYETI 208 (248)
Q Consensus 129 ~~r~~r~~~~~~~~rR~~aN~RER~Rm~~lN~AF~~LR~~LP~~~~~~kKLSKietLr~Ai~YI~~L~~lL~~~~~~~~~ 208 (248)
++-|||+... .+||++|.+|||+|++.||+||+.|+++ ++..++++|.||||||.||+||..|+.||++....+..
T Consensus 106 ckackrks~s--vDRRKAATMRERRRLkKVNEAFE~LKRr--T~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~~~~ 181 (284)
T KOG3960|consen 106 CKACKRKSTS--VDRRKAATMRERRRLKKVNEAFETLKRR--TSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQAEKG 181 (284)
T ss_pred hhhccccccc--hhHHHHHHHHHHHHHHHHHHHHHHHHhh--cCCCccccccHHHHHHHHHHHHHHHHHHHHHhhccchh
Confidence 6788887654 5799999999999999999999999999 44578999999999999999999999999998655543
Q ss_pred c
Q psy9185 209 L 209 (248)
Q Consensus 209 ~ 209 (248)
+
T Consensus 182 ~ 182 (284)
T KOG3960|consen 182 L 182 (284)
T ss_pred h
Confidence 3
No 2
>KOG4029|consensus
Probab=99.68 E-value=4.7e-17 Score=143.88 Aligned_cols=64 Identities=44% Similarity=0.649 Sum_probs=58.9
Q ss_pred chHHhhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHhcCCC
Q psy9185 140 ERDYKKTACDRERTRMRDMNRAFDLLRNRLPPCKPP-GKKLSKIESLRMAIRYIRHLQCLLEYGPE 204 (248)
Q Consensus 140 ~~~rR~~aN~RER~Rm~~lN~AF~~LR~~LP~~~~~-~kKLSKietLr~Ai~YI~~L~~lL~~~~~ 204 (248)
...+|.++|+|||+||+.||.||+.||.+||. .+. ++|||||+|||+||.||.+|++||+.+..
T Consensus 106 ~~~~~~~~n~RER~Rv~~vN~~f~~Lr~~lP~-~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~ 170 (228)
T KOG4029|consen 106 TSAQRQARNARERQRVQSVNSAFAELRALLPT-EPPQSKKLSKVETLRLATSYIRYLTKLLATQEA 170 (228)
T ss_pred hhhhhhhhhhhhhhcccchhhhhHHHHhcCCC-CCCcccccCcccchHHHHHHHHHHHHHhccccc
Confidence 34578899999999999999999999999995 666 99999999999999999999999999863
No 3
>KOG3898|consensus
Probab=99.58 E-value=7.9e-16 Score=139.45 Aligned_cols=65 Identities=43% Similarity=0.510 Sum_probs=59.7
Q ss_pred cchHHhhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCC
Q psy9185 139 SERDYKKTACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQCLLEYGPE 204 (248)
Q Consensus 139 ~~~~rR~~aN~RER~Rm~~lN~AF~~LR~~LP~~~~~~kKLSKietLr~Ai~YI~~L~~lL~~~~~ 204 (248)
..+.||.++|+|||+|||+||+|||.||++||. ...+.||+|||||++|.+||..|+.++..+..
T Consensus 68 ~~~~rR~kaNaRER~RMH~LNdAld~LReviP~-~~~~~klskIetl~~a~~yi~als~~~ls~~~ 132 (254)
T KOG3898|consen 68 ALTLRRLKANARERTRMHDLNDALDALREVIPH-GLHPPKLSKIETLRLAANYIAALSEVLLSGIA 132 (254)
T ss_pred hhhhhcccccchhhccccchhHHHHHhHhhccC-cCCCCCCCcchhHHhhhcchhhhccccccCCC
Confidence 346789999999999999999999999999995 67899999999999999999999998887753
No 4
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.45 E-value=2.5e-13 Score=95.36 Aligned_cols=54 Identities=43% Similarity=0.669 Sum_probs=49.2
Q ss_pred HhhHhhHHHHHHHHHHHHHHHHHHhhCCCC-CCCCCCCCHHHHHHHHHHHHHHHH
Q psy9185 143 YKKTACDRERTRMRDMNRAFDLLRNRLPPC-KPPGKKLSKIESLRMAIRYIRHLQ 196 (248)
Q Consensus 143 rR~~aN~RER~Rm~~lN~AF~~LR~~LP~~-~~~~kKLSKietLr~Ai~YI~~L~ 196 (248)
+|..+|.+||.|+..||.+|+.|+.+||.+ .....|++|++||+.||+||..|+
T Consensus 1 rR~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 1 RRQKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 578899999999999999999999999963 136789999999999999999996
No 5
>KOG4395|consensus
Probab=99.38 E-value=4.9e-13 Score=121.69 Aligned_cols=63 Identities=44% Similarity=0.579 Sum_probs=58.2
Q ss_pred chHHhhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhcCC
Q psy9185 140 ERDYKKTACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQCLLEYGP 203 (248)
Q Consensus 140 ~~~rR~~aN~RER~Rm~~lN~AF~~LR~~LP~~~~~~kKLSKietLr~Ai~YI~~L~~lL~~~~ 203 (248)
...||.+||+|||+||+.||.|||.||.+|| ....++||||.|||++|..||..|..+|+...
T Consensus 171 ~~~rr~aanarErrrm~gLN~AfD~Lr~v~p-~~~~d~~LSkyetLqmaq~yi~~l~~~l~~~~ 233 (285)
T KOG4395|consen 171 NSHRRLAANARERRRMNGLNSAFDRLRLVVP-DGDSDKKLSKYETLQMAQGYILALGCLLDLPM 233 (285)
T ss_pred HHhhhcccchHHHHHhhhHHHHHHHHHHhcC-CCCccchhhhhhHHHHHHHHHhhhHHhhcCcc
Confidence 4468899999999999999999999999999 56789999999999999999999999997764
No 6
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.35 E-value=4.3e-12 Score=89.07 Aligned_cols=57 Identities=51% Similarity=0.688 Sum_probs=51.8
Q ss_pred HHhhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy9185 142 DYKKTACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQCLL 199 (248)
Q Consensus 142 ~rR~~aN~RER~Rm~~lN~AF~~LR~~LP~~~~~~kKLSKietLr~Ai~YI~~L~~lL 199 (248)
.+|..+|.+||.|+..||.+|+.|+..||. .....|++|+.||..|++||..|+..+
T Consensus 3 ~~r~~~~~~Er~RR~~~n~~~~~L~~llp~-~~~~~k~~k~~iL~~a~~yI~~L~~~~ 59 (60)
T cd00083 3 SRREAHNLRERRRRERINDAFDELRSLLPT-LPPSKKLSKAEILRKAVDYIKSLQELL 59 (60)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHCCC-CCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 367789999999999999999999999995 335899999999999999999999865
No 7
>smart00353 HLH helix loop helix domain.
Probab=99.26 E-value=2.3e-11 Score=84.03 Aligned_cols=52 Identities=56% Similarity=0.754 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy9185 148 CDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQCLLE 200 (248)
Q Consensus 148 N~RER~Rm~~lN~AF~~LR~~LP~~~~~~kKLSKietLr~Ai~YI~~L~~lL~ 200 (248)
|.+||.|+..||.+|+.|+..||.. ....|++|+.||..|++||..|+..++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~-~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTL-PNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 5789999999999999999999953 368999999999999999999998765
No 8
>KOG0561|consensus
Probab=99.13 E-value=9.5e-11 Score=109.34 Aligned_cols=56 Identities=38% Similarity=0.542 Sum_probs=51.4
Q ss_pred chHHhhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q psy9185 140 ERDYKKTACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQC 197 (248)
Q Consensus 140 ~~~rR~~aN~RER~Rm~~lN~AF~~LR~~LP~~~~~~kKLSKietLr~Ai~YI~~L~~ 197 (248)
++.||..||..||+||+.||.+|..||.+||. -.+.||||..||+...+||..|+.
T Consensus 57 rRmRReIANsNERRRMQSINAGFqsLr~LlPr--~eGEKLSKAAILQQTa~yI~~Le~ 112 (373)
T KOG0561|consen 57 RRMRREIANSNERRRMQSINAGFQSLRALLPR--KEGEKLSKAAILQQTADYIHQLEG 112 (373)
T ss_pred HHHHHHhhcchHHHHHHhhhHHHHHHHHhcCc--ccchhhHHHHHHHHHHHHHHHHHh
Confidence 45688899999999999999999999999996 458999999999999999999874
No 9
>KOG4447|consensus
Probab=99.11 E-value=3.8e-11 Score=102.69 Aligned_cols=65 Identities=38% Similarity=0.581 Sum_probs=58.3
Q ss_pred hHHhhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCccc
Q psy9185 141 RDYKKTACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQCLLEYGPEYET 207 (248)
Q Consensus 141 ~~rR~~aN~RER~Rm~~lN~AF~~LR~~LP~~~~~~kKLSKietLr~Ai~YI~~L~~lL~~~~~~~~ 207 (248)
+.+|.-||.|||+|-++||+||..||+.||+ . +..|||||.||++|..||.+|..+|..+...+.
T Consensus 76 q~qrv~anvrerqRtqsLn~AF~~lr~iipt-l-PsdklSkiqtLklA~ryidfl~~vl~s~l~~~~ 140 (173)
T KOG4447|consen 76 QKQRVMANVRERQRTQSLNEAFAALRKIIPT-L-PSDKLSKIQTLKLAARYIDFLYQVLQSDLELDP 140 (173)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHhhcCC-C-CccccccccchhhcccCCchhhhcccccccccc
Confidence 4578899999999999999999999999996 3 478999999999999999999999998854443
No 10
>KOG3910|consensus
Probab=98.90 E-value=5.2e-09 Score=102.89 Aligned_cols=64 Identities=27% Similarity=0.295 Sum_probs=58.2
Q ss_pred cchHHhhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhcC
Q psy9185 139 SERDYKKTACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQCLLEYG 202 (248)
Q Consensus 139 ~~~~rR~~aN~RER~Rm~~lN~AF~~LR~~LP~~~~~~kKLSKietLr~Ai~YI~~L~~lL~~~ 202 (248)
.+++||.+.|+|||-|+++||+||.+|-+.+-.....+|--+|+-||.+|+.-|..|++.+++-
T Consensus 522 REkERR~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRER 585 (632)
T KOG3910|consen 522 REKERRMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRER 585 (632)
T ss_pred HHHHHHhhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHHc
Confidence 4578999999999999999999999999887744567899999999999999999999999875
No 11
>KOG1319|consensus
Probab=98.29 E-value=1.2e-06 Score=77.70 Aligned_cols=60 Identities=27% Similarity=0.429 Sum_probs=51.8
Q ss_pred HhhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCC---CCCCHHHHHHHHHHHHHHHHHHHhcC
Q psy9185 143 YKKTACDRERTRMRDMNRAFDLLRNRLPPCKPPG---KKLSKIESLRMAIRYIRHLQCLLEYG 202 (248)
Q Consensus 143 rR~~aN~RER~Rm~~lN~AF~~LR~~LP~~~~~~---kKLSKietLr~Ai~YI~~L~~lL~~~ 202 (248)
||.++..-||+|..-||.+++.|+.+||.+.+.+ .||||.-||+.||+||.+|..-....
T Consensus 62 rr~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kq 124 (229)
T KOG1319|consen 62 RRRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQ 124 (229)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667888899999999999999999999876543 69999999999999999997655443
No 12
>KOG1318|consensus
Probab=98.23 E-value=1.6e-05 Score=77.26 Aligned_cols=62 Identities=27% Similarity=0.393 Sum_probs=55.6
Q ss_pred hHHhhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhcC
Q psy9185 141 RDYKKTACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQCLLEYG 202 (248)
Q Consensus 141 ~~rR~~aN~RER~Rm~~lN~AF~~LR~~LP~~~~~~kKLSKietLr~Ai~YI~~L~~lL~~~ 202 (248)
+.||..+|+=||+|.-+||+...+|..+||.+...+-|+.|--||+.+++||..|++.++..
T Consensus 231 r~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~~ 292 (411)
T KOG1318|consen 231 RRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQRA 292 (411)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHHH
Confidence 34566799999999999999999999999987777889999999999999999999988844
No 13
>KOG2483|consensus
Probab=97.62 E-value=0.00022 Score=64.73 Aligned_cols=61 Identities=18% Similarity=0.245 Sum_probs=51.2
Q ss_pred chHHhhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHhcC
Q psy9185 140 ERDYKKTACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLS-KIESLRMAIRYIRHLQCLLEYG 202 (248)
Q Consensus 140 ~~~rR~~aN~RER~Rm~~lN~AF~~LR~~LP~~~~~~kKLS-KietLr~Ai~YI~~L~~lL~~~ 202 (248)
....|..+|+-||+|...|.++|+.||..||. .. +.+-+ -+.||+.|..||..|+......
T Consensus 56 ~~~~R~~HN~LEk~RRahlk~~~~~Lk~~vP~-~~-~~~~~t~lsiL~kA~~~i~~l~~~~~~~ 117 (232)
T KOG2483|consen 56 AASSRAHHNALEKRRRAHLKDCFESLKDSVPL-LN-GETRSTTLSILDKALEHIQSLERKSATQ 117 (232)
T ss_pred CCcchhhhhhhhHHHHHHHHHHHHHHHHhCCC-CC-CcchhhhhHhhhhHHHHHHHHHhHHHHH
Confidence 34578899999999999999999999999995 43 44444 8999999999999998765543
No 14
>KOG2588|consensus
Probab=97.11 E-value=0.0018 Score=68.41 Aligned_cols=58 Identities=26% Similarity=0.248 Sum_probs=51.9
Q ss_pred HHhhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhcC
Q psy9185 142 DYKKTACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQCLLEYG 202 (248)
Q Consensus 142 ~rR~~aN~RER~Rm~~lN~AF~~LR~~LP~~~~~~kKLSKietLr~Ai~YI~~L~~lL~~~ 202 (248)
.+|.++|.-|++=..+||+-..+||..|| +..-||.|-++||.||+||..|+......
T Consensus 275 ~kRtAHN~IEKRYRsSINDKI~eLk~lV~---g~~aKl~kSavLr~ai~~i~dl~~~nq~l 332 (953)
T KOG2588|consen 275 EKRTAHNIIEKRYRSSINDKIIELKDLVP---GTEAKLNKSAVLRKAIDYIEDLQGYNQKL 332 (953)
T ss_pred cccchhhHHHHHhhcchhHHHHHHHHhcC---ccHhhhhhhhhHHHHHHHHHHhhcccccc
Confidence 68999999999999999999999999999 34789999999999999999998754433
No 15
>KOG4304|consensus
Probab=97.06 E-value=0.00058 Score=62.53 Aligned_cols=58 Identities=26% Similarity=0.338 Sum_probs=48.4
Q ss_pred HhhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCC----CCCCHHHHHHHHHHHHHHHHHHHh
Q psy9185 143 YKKTACDRERTRMRDMNRAFDLLRNRLPPCKPPG----KKLSKIESLRMAIRYIRHLQCLLE 200 (248)
Q Consensus 143 rR~~aN~RER~Rm~~lN~AF~~LR~~LP~~~~~~----kKLSKietLr~Ai~YI~~L~~lL~ 200 (248)
|+..+-.-||+|..-||.++++||.+||.+.-.+ .||-|.+||.++.+|.+.|+..-.
T Consensus 32 rk~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~ 93 (250)
T KOG4304|consen 32 RKVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQ 93 (250)
T ss_pred hhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcccc
Confidence 4455678899999999999999999999544222 799999999999999999987433
No 16
>KOG3561|consensus
Probab=96.55 E-value=0.0037 Score=65.43 Aligned_cols=56 Identities=23% Similarity=0.361 Sum_probs=51.9
Q ss_pred HhhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q psy9185 143 YKKTACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQCL 198 (248)
Q Consensus 143 rR~~aN~RER~Rm~~lN~AF~~LR~~LP~~~~~~kKLSKietLr~Ai~YI~~L~~l 198 (248)
.|..+|.-||+|...+|.=.++|-.+||.+..-.+|+-|..|||+|+..|+.+..+
T Consensus 20 ~Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 20 KRENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 47789999999999999999999999998766789999999999999999998885
No 17
>KOG4447|consensus
Probab=96.39 E-value=0.0018 Score=56.10 Aligned_cols=56 Identities=27% Similarity=0.322 Sum_probs=47.3
Q ss_pred HhhHhhHH-HHHHHHHHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy9185 143 YKKTACDR-ERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQCLLE 200 (248)
Q Consensus 143 rR~~aN~R-ER~Rm~~lN~AF~~LR~~LP~~~~~~kKLSKietLr~Ai~YI~~L~~lL~ 200 (248)
.+.-+|.| ||.|-+.+|++|..|+.++|- .+..+.+|+.+|+.|..||..|.++-.
T Consensus 21 ~~~~~r~~~e~~R~~~ls~~s~l~g~l~pg--spa~gk~~~ktlr~~~~~~~~~dE~q~ 77 (173)
T KOG4447|consen 21 EEECDRQRKERGRKRRLSDASTLLGKLEPG--SPADGKRGKKTLRIGTDSIQSLDELQK 77 (173)
T ss_pred hhhhhhhHHHHhHHhhhhhhhhhccccCCC--CCCcccccccccccCCCchhhHHHHHH
Confidence 44455666 999999999999999999994 346788999999999999999988644
No 18
>PF01056 Myc_N: Myc amino-terminal region; InterPro: IPR012682 The class III basic helix-turn-helix (bHLH) transcription factors have proliferative and apoptotic roles and are characterised by the presence of a leucine zipper adjacent to the bHLH domain. The myc oncogene gene was first discovered in small-cell lung cancer cell lines where it is found to be deregulated []. Although the biochemical function of the gene product is unknown, as a nuclear protein with a short half-life it may play a direct or indirect role in controlling gene expression []. Myc forms a heterodimer with Max, and this complex regulates cell growth through direct activation of genes involved in cell replication []. This entry represents the N-terminal domain found adjacent to the basic helix-loop-helix (bHLH) region (IPR001092 from INTERPRO).; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1EE4_C.
Probab=93.35 E-value=0.024 Score=54.07 Aligned_cols=46 Identities=13% Similarity=0.062 Sum_probs=0.0
Q ss_pred ccccCCCceecccCCCCCCcc-cCCC---------CCCCCCCCCCcCCccccccCCC
Q psy9185 42 LHNADLNFVKDESSSPSSSTL-ISSQ---------CLPSSMTSGQISSSTLTVLHPM 88 (248)
Q Consensus 42 ~~~~~~~~vt~~~sspsss~~-~ss~---------~s~s~~ts~~~s~s~~~~~~~~ 88 (248)
-.+||||||||+++.+.+... .+.. -++-..-+-+.++. ||||+|+
T Consensus 239 eeeEEIDVVTVEkr~~~~~~~~~~t~~~t~~~r~~~~~l~lKRchv~ih-QHNYAAp 294 (329)
T PF01056_consen 239 EEEEEIDVVTVEKRQSSSRRKPSTTFTVTITSRAQPSPLILKRCHVSIH-QHNYAAP 294 (329)
T ss_dssp ---------------------------------------------------------
T ss_pred CCCcceEEEEeeeccccCccccccccccccccccCCCCccceeeeeeec-cccccCC
Confidence 458999999999987643311 1110 01112233344665 9999997
No 19
>PLN03217 transcription factor ATBS1; Provisional
Probab=93.07 E-value=0.2 Score=39.83 Aligned_cols=48 Identities=23% Similarity=0.257 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHhhCCCCC--CCCCCCCHHHHHHHHHHHHHHHHHHHhcC
Q psy9185 155 MRDMNRAFDLLRNRLPPCK--PPGKKLSKIESLRMAIRYIRHLQCLLEYG 202 (248)
Q Consensus 155 m~~lN~AF~~LR~~LP~~~--~~~kKLSKietLr~Ai~YI~~L~~lL~~~ 202 (248)
-.+||+-..+|+.+||... ....|.|-.++|+.+|+||..|..-+++-
T Consensus 19 ddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdL 68 (93)
T PLN03217 19 EDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDL 68 (93)
T ss_pred HHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999532 23568899999999999999998776654
No 20
>KOG3558|consensus
Probab=87.88 E-value=0.65 Score=48.48 Aligned_cols=52 Identities=29% Similarity=0.395 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhcC
Q psy9185 150 RERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQCLLEYG 202 (248)
Q Consensus 150 RER~Rm~~lN~AF~~LR~~LP~~~~~~kKLSKietLr~Ai~YI~~L~~lL~~~ 202 (248)
--|.|..+=|.-|.+|.++||-...-.-.|-|+.|+|+||.|.+ |.+++...
T Consensus 53 AARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLR-lrk~a~~g 104 (768)
T KOG3558|consen 53 AARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLR-LRKFAGAG 104 (768)
T ss_pred hhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHH-HHHHhhcC
Confidence 34567888899999999999943345789999999999999976 45555544
No 21
>KOG3559|consensus
Probab=65.92 E-value=5.9 Score=39.72 Aligned_cols=47 Identities=26% Similarity=0.359 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q psy9185 152 RTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQCL 198 (248)
Q Consensus 152 R~Rm~~lN~AF~~LR~~LP~~~~~~kKLSKietLr~Ai~YI~~L~~l 198 (248)
|.|.+.=|..|-+|.+.||-...-...|-|..|+|+|..||.+-.-.
T Consensus 10 ~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKmr~vF 56 (598)
T KOG3559|consen 10 RTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKMRNVF 56 (598)
T ss_pred HHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHHHHhc
Confidence 35667779999999999994333345599999999999999876544
No 22
>KOG3560|consensus
Probab=65.69 E-value=5.1 Score=41.34 Aligned_cols=48 Identities=29% Similarity=0.453 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHH---HHHHHHhcCCC
Q psy9185 157 DMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIR---HLQCLLEYGPE 204 (248)
Q Consensus 157 ~lN~AF~~LR~~LP~~~~~~kKLSKietLr~Ai~YI~---~L~~lL~~~~~ 204 (248)
.||..+|.|..+||....--.||-|+.+||+++.|++ +.+-+|.....
T Consensus 39 RLNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr~KSfFqvvl~~s~~ 89 (712)
T KOG3560|consen 39 RLNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLRVKSFFQVVLHQSSR 89 (712)
T ss_pred HhhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhcCcc
Confidence 3799999999999952223479999999999999996 45666766653
No 23
>PF11600 CAF-1_p150: Chromatin assembly factor 1 complex p150 subunit, N-terminal; InterPro: IPR021644 P150 is a polypeptide subunit of CAF-1, which functions in depositing newly synthesised and acetylated histones H3/H4 into chromatin during DNA replication and repair [].P150 is the HP1 interaction site of CAF-1 and lies within the N-terminal region of the protein [].
Probab=33.32 E-value=64 Score=28.58 Aligned_cols=21 Identities=38% Similarity=0.340 Sum_probs=9.7
Q ss_pred ccccccCCCceecccCCCCCC
Q psy9185 40 EILHNADLNFVKDESSSPSSS 60 (248)
Q Consensus 40 e~~~~~~~~~vt~~~sspsss 60 (248)
++-+..+++++.++++++++|
T Consensus 8 ~~~~~~~~~~~S~sss~ss~s 28 (216)
T PF11600_consen 8 ESSSSSDSSVLSSSSSSSSSS 28 (216)
T ss_pred cCCCcccCCcccccCCCCCCC
Confidence 344455555555544434333
No 24
>PF15459 RRP14: 60S ribosome biogenesis protein Rrp14
Probab=21.72 E-value=88 Score=23.22 Aligned_cols=18 Identities=33% Similarity=0.503 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHhhCC
Q psy9185 153 TRMRDMNRAFDLLRNRLP 170 (248)
Q Consensus 153 ~Rm~~lN~AF~~LR~~LP 170 (248)
.|++.=|.+|+.|-.+||
T Consensus 2 erl~~h~~~Fd~Ll~LIP 19 (64)
T PF15459_consen 2 ERLRAHSSFFDGLLSLIP 19 (64)
T ss_pred cHHHHHHHHHHHHHHhCC
Confidence 367888999999999999
No 25
>PF05687 DUF822: Plant protein of unknown function (DUF822); InterPro: IPR008540 This group of proteins contains members of the BZR1/LAT61 family of plant transcriptional repressors involved in controlling the response to Brassinosteroids (BRs). BRs are plant hormones that play essential roles in growth and development. BZR1 binds directly to DNA repressing the synthesis of genes involved in BR synthesis. Phosphorylation of BZR1 by BIN1 targets BZR1 to the 20S proteosome, while dephosphorylation leads to nuclear accumulation of BZR1 [].
Probab=21.03 E-value=3.6e+02 Score=23.55 Aligned_cols=26 Identities=27% Similarity=0.215 Sum_probs=20.4
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHhhCC
Q psy9185 145 KTACDRERTRMRDMNRAFDLLRNRLP 170 (248)
Q Consensus 145 ~~aN~RER~Rm~~lN~AF~~LR~~LP 170 (248)
.....|||+|..---.-|..||.+=-
T Consensus 13 Ennk~RERrRRAIaakIfaGLR~~Gn 38 (150)
T PF05687_consen 13 ENNKRRERRRRAIAAKIFAGLRAHGN 38 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34556999999777778999999733
Done!