Query psy9185
Match_columns 248
No_of_seqs 155 out of 678
Neff 4.4
Searched_HMMs 29240
Date Fri Aug 16 21:06:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9185.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9185hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ql2_B Neurod1, neurogenic dif 99.9 5.1E-23 1.7E-27 148.9 7.9 59 143-202 2-60 (60)
2 1mdy_A Protein (MYOD BHLH doma 99.9 1.8E-22 6E-27 149.5 8.0 67 131-201 2-68 (68)
3 4aya_A DNA-binding protein inh 99.8 8.3E-20 2.8E-24 143.7 7.7 66 143-209 25-90 (97)
4 2lfh_A DNA-binding protein inh 99.8 1.8E-20 6.2E-25 139.1 2.9 51 146-197 17-67 (68)
5 3u5v_A Protein MAX, transcript 99.7 2.2E-17 7.7E-22 124.4 4.5 65 141-205 3-67 (76)
6 1hlo_A Protein (transcription 99.6 8.6E-15 2.9E-19 110.0 7.6 61 140-202 9-69 (80)
7 1nkp_B MAX protein, MYC proto- 99.5 3.7E-14 1.3E-18 106.9 7.1 57 143-201 2-58 (83)
8 1nkp_A C-MYC, MYC proto-oncoge 99.5 6.9E-14 2.4E-18 107.5 7.8 59 141-200 4-62 (88)
9 1nlw_A MAD protein, MAX dimeri 99.4 4.4E-13 1.5E-17 101.6 7.5 57 144-201 2-58 (80)
10 1am9_A Srebp-1A, protein (ster 99.3 5.3E-12 1.8E-16 95.6 7.9 58 141-201 4-61 (82)
11 1an4_A Protein (upstream stimu 99.2 1.6E-12 5.6E-17 93.8 1.6 55 143-197 5-61 (65)
12 1a0a_A BHLH, protein (phosphat 99.2 1.1E-11 3.7E-16 90.0 2.6 57 143-199 2-61 (63)
13 4h10_B Circadian locomoter out 99.1 1.7E-10 5.7E-15 86.1 8.5 58 140-200 5-62 (71)
14 4h10_A ARYL hydrocarbon recept 99.1 4.1E-11 1.4E-15 89.5 4.9 58 141-198 7-64 (73)
15 4ati_A MITF, microphthalmia-as 99.1 1.1E-10 3.9E-15 93.9 7.5 61 142-202 26-86 (118)
16 4f3l_A Mclock, circadian locom 98.4 3.3E-07 1.1E-11 83.4 6.9 57 141-200 10-66 (361)
17 4f3l_B BMAL1B; BHLH, PAS, circ 98.2 7.1E-07 2.4E-11 82.3 4.8 56 141-196 11-66 (387)
18 4ath_A MITF, microphthalmia-as 97.8 3.1E-05 1E-09 59.3 6.4 46 156-201 5-50 (83)
19 3muj_A Transcription factor CO 93.0 0.17 5.8E-06 41.9 5.9 41 156-196 94-134 (138)
20 3mlp_A Transcription factor CO 66.5 1.1 3.7E-05 42.4 -0.3 40 156-195 320-359 (402)
21 1pd7_B MAD1; PAH2, SIN3, eukar 46.0 13 0.00045 22.5 2.2 20 178-197 1-20 (26)
No 1
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=99.88 E-value=5.1e-23 Score=148.89 Aligned_cols=59 Identities=44% Similarity=0.585 Sum_probs=55.2
Q ss_pred HhhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhcC
Q psy9185 143 YKKTACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQCLLEYG 202 (248)
Q Consensus 143 rR~~aN~RER~Rm~~lN~AF~~LR~~LP~~~~~~kKLSKietLr~Ai~YI~~L~~lL~~~ 202 (248)
+|.+||+|||+||+.||+||+.||.+||. .+.++||||++||++|++||.+|+++|+++
T Consensus 2 rR~~~N~rER~R~~~iN~af~~LR~~lP~-~~~~~klSKi~tLr~Ai~YI~~L~~~L~~g 60 (60)
T 2ql2_B 2 RRMKANARERNRMHGLNAALDNLRKVVPC-YSKTQKLSKIETLRLAKNYIWALSEILRSG 60 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSS-CCSSSCCCHHHHHHHHHHHHHHHHHHTTC-
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHccC-CCCcCcCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 78899999999999999999999999995 678999999999999999999999999864
No 2
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.87 E-value=1.8e-22 Score=149.49 Aligned_cols=67 Identities=42% Similarity=0.624 Sum_probs=59.4
Q ss_pred cccCCCCccchHHhhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhc
Q psy9185 131 RCHRKISDSERDYKKTACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQCLLEY 201 (248)
Q Consensus 131 r~~r~~~~~~~~rR~~aN~RER~Rm~~lN~AF~~LR~~LP~~~~~~kKLSKietLr~Ai~YI~~L~~lL~~ 201 (248)
.|+|+. ....+|.+||+|||+||+.||+||+.||.+||. .+++||||++||+.||+||.+|+++|++
T Consensus 2 ~ckr~~--~~~~rR~~aN~rER~R~~~iN~af~~LR~~iP~--~~~~KlSKi~tLr~Ai~YI~~L~~~L~~ 68 (68)
T 1mdy_A 2 ELKRKT--TNADRRKAATMRERRRLSKVNEAFETLKRSTSS--NPNQRLPKVEILRNAIRYIEGLQALLRD 68 (68)
T ss_dssp CSSCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCS--CTTSCCCHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCcCC--CchhhhhHhhHHHHHHHHHHHHHHHHHHHhcCC--CCCCCCCHHHHHHHHHHHHHHHHHHHcC
Confidence 466654 346789999999999999999999999999995 3489999999999999999999999864
No 3
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=99.80 E-value=8.3e-20 Score=143.74 Aligned_cols=66 Identities=30% Similarity=0.424 Sum_probs=53.8
Q ss_pred HhhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCccccc
Q psy9185 143 YKKTACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQCLLEYGPEYETIL 209 (248)
Q Consensus 143 rR~~aN~RER~Rm~~lN~AF~~LR~~LP~~~~~~kKLSKietLr~Ai~YI~~L~~lL~~~~~~~~~~ 209 (248)
|++.+..+||.||+.||+||+.||++||+ .+.++|||||||||+||+||.+|+++|++.+.....+
T Consensus 25 R~k~~~~~~r~Rm~~lN~AF~~LR~~vP~-~p~~kKLSKIETLRlAi~YI~~Lq~~L~~~~~~~~~~ 90 (97)
T 4aya_A 25 RSKTPVDDPMSLLYNMNDCYSKLKELVPS-IPQNKKVSKMEILQHVIDYILDLQIALDSHLKPSFLV 90 (97)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHCTT-SCSSSCCCHHHHHHHHHHHHHHHHHHHHTTTSTTCC-
T ss_pred HHhcccccHHHHHHHHHHHHHHHHHHCCC-CCCCCcccHHHHHHHHHHHHHHHHHHHhcCCCCcchh
Confidence 44455677899999999999999999995 6789999999999999999999999999987544433
No 4
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.79 E-value=1.8e-20 Score=139.06 Aligned_cols=51 Identities=35% Similarity=0.574 Sum_probs=48.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q psy9185 146 TACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQC 197 (248)
Q Consensus 146 ~aN~RER~Rm~~lN~AF~~LR~~LP~~~~~~kKLSKietLr~Ai~YI~~L~~ 197 (248)
.||+|||+||+.||+||+.||++||. .+.++|||||||||+||+||.+|+.
T Consensus 17 ~a~erER~Rm~~lN~aF~~LR~~VP~-~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 17 PAAEEPLSLLDDMNHCYSRLRELVPG-VPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CCBCCCSCSSSHHHHHHHHHHHHCCC-CCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred CccHHHHHHHHHHHHHHHHHHHHCCC-CCCCCCccHHHHHHHHHHHHHHHHc
Confidence 57999999999999999999999995 6889999999999999999999985
No 5
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.67 E-value=2.2e-17 Score=124.36 Aligned_cols=65 Identities=25% Similarity=0.190 Sum_probs=53.1
Q ss_pred hHHhhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCc
Q psy9185 141 RDYKKTACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQCLLEYGPEY 205 (248)
Q Consensus 141 ~~rR~~aN~RER~Rm~~lN~AF~~LR~~LP~~~~~~kKLSKietLr~Ai~YI~~L~~lL~~~~~~ 205 (248)
.++|..+|++||+|+..||+||+.||.+||.+.+.++++||++||+.||+||..|++.|++...+
T Consensus 3 ~~rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~~~ 67 (76)
T 3u5v_A 3 ADKRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNLN 67 (76)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred hhHHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45889999999999999999999999999943455677799999999999999999999987543
No 6
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.55 E-value=8.6e-15 Score=110.03 Aligned_cols=61 Identities=25% Similarity=0.355 Sum_probs=54.4
Q ss_pred chHHhhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhcC
Q psy9185 140 ERDYKKTACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQCLLEYG 202 (248)
Q Consensus 140 ~~~rR~~aN~RER~Rm~~lN~AF~~LR~~LP~~~~~~kKLSKietLr~Ai~YI~~L~~lL~~~ 202 (248)
...+|..+|.+||+|+..||.+|+.|+.+||.. .+.|+||++||+.|++||.+|+..++..
T Consensus 9 ~~~~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~--~~~k~sK~~iL~~Ai~YI~~L~~~~~~L 69 (80)
T 1hlo_A 9 DADKRAHHNALERKRRDHIKDSFHSLRDSVPSL--QGEKASRAQILDKATEYIQYMRRKNHTH 69 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGG--TTSCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHCcCC--CCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 356899999999999999999999999999952 3578999999999999999999877653
No 7
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.49 E-value=3.7e-14 Score=106.95 Aligned_cols=57 Identities=25% Similarity=0.349 Sum_probs=51.7
Q ss_pred HhhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhc
Q psy9185 143 YKKTACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQCLLEY 201 (248)
Q Consensus 143 rR~~aN~RER~Rm~~lN~AF~~LR~~LP~~~~~~kKLSKietLr~Ai~YI~~L~~lL~~ 201 (248)
+|..+|.+||+|+..||++|+.|+.+||.. .+.|+||++||+.|++||..|+..++.
T Consensus 2 rR~~hn~~Er~RR~~in~~f~~Lr~lvP~~--~~~k~sK~~iL~~Ai~YI~~L~~~~~~ 58 (83)
T 1nkp_B 2 KRAHHNALERKRRDHIKDSFHSLRDSVPSL--QGEKASRAQILDKATEYIQYMRRKNHT 58 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSGGG--TTSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHHHHHHHHHHHHHHCCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 688999999999999999999999999952 368899999999999999999976654
No 8
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.48 E-value=6.9e-14 Score=107.53 Aligned_cols=59 Identities=27% Similarity=0.357 Sum_probs=53.8
Q ss_pred hHHhhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy9185 141 RDYKKTACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQCLLE 200 (248)
Q Consensus 141 ~~rR~~aN~RER~Rm~~lN~AF~~LR~~LP~~~~~~kKLSKietLr~Ai~YI~~L~~lL~ 200 (248)
..+|..+|..||+|+..||++|+.||.+||. .+.+.|+||+.||+.||+||..|+....
T Consensus 4 ~~~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~-~~~~~K~sK~~iL~~A~~YI~~L~~~~~ 62 (88)
T 1nkp_A 4 NVKRRTHNVLERQRRNELKRSFFALRDQIPE-LENNEKAPKVVILKKATAYILSVQAEEQ 62 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCGG-GTTCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-CCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4589999999999999999999999999994 5568999999999999999999998654
No 9
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.41 E-value=4.4e-13 Score=101.57 Aligned_cols=57 Identities=18% Similarity=0.234 Sum_probs=52.0
Q ss_pred hhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhc
Q psy9185 144 KKTACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQCLLEY 201 (248)
Q Consensus 144 R~~aN~RER~Rm~~lN~AF~~LR~~LP~~~~~~kKLSKietLr~Ai~YI~~L~~lL~~ 201 (248)
|..+|+.||+|+..||.+|+.||.+||. .+.+.|+||+.||+.|++||..|+.-...
T Consensus 2 R~~HN~~ER~RR~~lk~~f~~Lr~~vP~-~~~~~k~sk~~iL~kA~~yI~~L~~~~~~ 58 (80)
T 1nlw_A 2 RSTHNEMEKNRRAHLRLSLEKLKGLVPL-GPDSSRHTTLSLLTKAKLHIKKLEDSDRK 58 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCC-CSSSCCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999994 56789999999999999999999986543
No 10
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.30 E-value=5.3e-12 Score=95.58 Aligned_cols=58 Identities=26% Similarity=0.248 Sum_probs=53.1
Q ss_pred hHHhhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhc
Q psy9185 141 RDYKKTACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQCLLEY 201 (248)
Q Consensus 141 ~~rR~~aN~RER~Rm~~lN~AF~~LR~~LP~~~~~~kKLSKietLr~Ai~YI~~L~~lL~~ 201 (248)
..+|..+|..||+|...||++|..|+.+||. .+.|++|+.||..||+||.+|+..++.
T Consensus 4 ~~rr~~H~~~ErrRR~~in~~f~~L~~lvP~---~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~ 61 (82)
T 1am9_A 4 GEKRTAHNAIEKRYRSSINDKIIELKDLVVG---TEAKLNKSAVLRKAIDYIRFLQHSNQK 61 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---SSCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhhHHHHHHHHHHHHHHHHHHhccC---CCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999999999999999999999994 368999999999999999999987764
No 11
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.23 E-value=1.6e-12 Score=93.84 Aligned_cols=55 Identities=24% Similarity=0.200 Sum_probs=48.5
Q ss_pred HhhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCC--CCCCCHHHHHHHHHHHHHHHHH
Q psy9185 143 YKKTACDRERTRMRDMNRAFDLLRNRLPPCKPP--GKKLSKIESLRMAIRYIRHLQC 197 (248)
Q Consensus 143 rR~~aN~RER~Rm~~lN~AF~~LR~~LP~~~~~--~kKLSKietLr~Ai~YI~~L~~ 197 (248)
+|..+|..||+|...||++|+.|+.+||.+... ..|++|+.||..|++||..|+.
T Consensus 5 rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~ 61 (65)
T 1an4_A 5 RRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQ 61 (65)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHT
T ss_pred HHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHH
Confidence 567899999999999999999999999964422 2589999999999999999986
No 12
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.15 E-value=1.1e-11 Score=90.03 Aligned_cols=57 Identities=26% Similarity=0.264 Sum_probs=49.5
Q ss_pred HhhHhhHHHHHHHHHHHHHHHHHHhhCCCCCC---CCCCCCHHHHHHHHHHHHHHHHHHH
Q psy9185 143 YKKTACDRERTRMRDMNRAFDLLRNRLPPCKP---PGKKLSKIESLRMAIRYIRHLQCLL 199 (248)
Q Consensus 143 rR~~aN~RER~Rm~~lN~AF~~LR~~LP~~~~---~~kKLSKietLr~Ai~YI~~L~~lL 199 (248)
+|..++.-||.|+..||.+|+.|+.+||.+.. .+.++||.+||.+|++||..|++-+
T Consensus 2 kr~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~ 61 (63)
T 1a0a_A 2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG 61 (63)
T ss_dssp CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHh
Confidence 46678999999999999999999999995432 2689999999999999999998643
No 13
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.14 E-value=1.7e-10 Score=86.07 Aligned_cols=58 Identities=19% Similarity=0.322 Sum_probs=52.5
Q ss_pred chHHhhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy9185 140 ERDYKKTACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQCLLE 200 (248)
Q Consensus 140 ~~~rR~~aN~RER~Rm~~lN~AF~~LR~~LP~~~~~~kKLSKietLr~Ai~YI~~L~~lL~ 200 (248)
.+.+|..+|..||+|...||..|..|+.+||. ...|+.|..||+.||+||..|+..+.
T Consensus 5 ~~~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~---~~~K~dK~sIL~~aI~yik~Lq~~~~ 62 (71)
T 4h10_B 5 DKAKRVSRNKSEKKRRDQFNVLIKELGSMLPG---NARKMDKSTVLQKSIDFLRKHKEITA 62 (71)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSS---CCSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHhhhhhHHHhhHHHHHHHHHHHHHHhCCC---CCCCCcHHHHHHHHHHHHHHHHHhhh
Confidence 34578899999999999999999999999993 46799999999999999999998764
No 14
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.13 E-value=4.1e-11 Score=89.54 Aligned_cols=58 Identities=28% Similarity=0.491 Sum_probs=51.7
Q ss_pred hHHhhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q psy9185 141 RDYKKTACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQCL 198 (248)
Q Consensus 141 ~~rR~~aN~RER~Rm~~lN~AF~~LR~~LP~~~~~~kKLSKietLr~Ai~YI~~L~~l 198 (248)
+.+|..++..||+|...||.+|+.|+.+||.+.....||.|+.||++||+||..|+..
T Consensus 7 ~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~~ 64 (73)
T 4h10_A 7 KNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA 64 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhcC
Confidence 4578889999999999999999999999996544568999999999999999998754
No 15
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.12 E-value=1.1e-10 Score=93.88 Aligned_cols=61 Identities=25% Similarity=0.291 Sum_probs=48.4
Q ss_pred HHhhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhcC
Q psy9185 142 DYKKTACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQCLLEYG 202 (248)
Q Consensus 142 ~rR~~aN~RER~Rm~~lN~AF~~LR~~LP~~~~~~kKLSKietLr~Ai~YI~~L~~lL~~~ 202 (248)
.+|..+|.-||+|...||++|..|+.+||.+...+.|++|+.||..||+||..|+..++..
T Consensus 26 ~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l 86 (118)
T 4ati_A 26 QKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRA 86 (118)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677899999999999999999999999976555789999999999999999998766544
No 16
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.42 E-value=3.3e-07 Score=83.38 Aligned_cols=57 Identities=19% Similarity=0.288 Sum_probs=44.4
Q ss_pred hHHhhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Q psy9185 141 RDYKKTACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQCLLE 200 (248)
Q Consensus 141 ~~rR~~aN~RER~Rm~~lN~AF~~LR~~LP~~~~~~kKLSKietLr~Ai~YI~~L~~lL~ 200 (248)
+.+|..+|..||+|...||..|..|+.+|| ....||.|+.||++|+.||..|+.+-.
T Consensus 10 ~~~~~~~~~~e~~rr~~~n~~~~~l~~~~p---~~~~~~dk~~il~~~~~~~~~~~~~~~ 66 (361)
T 4f3l_A 10 KAKRVSRNKSEKKRRDQFNVLIKELGSMLP---GNARKMDKSTVLQKSIDFLRKHKETTA 66 (361)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHTCC---SSSCCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHhCC---CCCCCcCHHHHHHHHHHHHHHHHhhcc
Confidence 346778999999999999999999999999 246899999999999999999998654
No 17
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.24 E-value=7.1e-07 Score=82.29 Aligned_cols=56 Identities=29% Similarity=0.527 Sum_probs=50.1
Q ss_pred hHHhhHhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q psy9185 141 RDYKKTACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQ 196 (248)
Q Consensus 141 ~~rR~~aN~RER~Rm~~lN~AF~~LR~~LP~~~~~~kKLSKietLr~Ai~YI~~L~ 196 (248)
+.+|..+|.-||+|...||..|.+|+.+||.+.....||.|+.||++|+.||+.|+
T Consensus 11 ~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~ 66 (387)
T 4f3l_B 11 KNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLR 66 (387)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHH
T ss_pred hhhcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhh
Confidence 45678899999999999999999999999954345789999999999999999887
No 18
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=97.85 E-value=3.1e-05 Score=59.33 Aligned_cols=46 Identities=24% Similarity=0.345 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhc
Q psy9185 156 RDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQCLLEY 201 (248)
Q Consensus 156 ~~lN~AF~~LR~~LP~~~~~~kKLSKietLr~Ai~YI~~L~~lL~~ 201 (248)
-+||+.|.+|..+||.+..++-|+.|..||+.|++||.+|++-.+.
T Consensus 5 ~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r 50 (83)
T 4ath_A 5 FNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQR 50 (83)
T ss_dssp HHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHH
T ss_pred hhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHH
Confidence 3699999999999997656789999999999999999999875443
No 19
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=93.04 E-value=0.17 Score=41.89 Aligned_cols=41 Identities=20% Similarity=0.264 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q psy9185 156 RDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQ 196 (248)
Q Consensus 156 ~~lN~AF~~LR~~LP~~~~~~kKLSKietLr~Ai~YI~~L~ 196 (248)
-.|+-+|++|.+.||-......+|.|.-||+.|.++...|-
T Consensus 94 PtId~gfqrl~k~~pr~pgdpe~lpk~~~lkraa~l~e~~~ 134 (138)
T 3muj_A 94 PTIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEALY 134 (138)
T ss_dssp CCHHHHHHHHHHHSCCCTTCCSSCCHHHHHHHHHHHHHHHH
T ss_pred CccccchhhhccccCCCCCChhhhhHHHHHHHHHHHHHHHh
Confidence 56899999999999954455699999999999999988773
No 20
>3mlp_A Transcription factor COE1; transcription factor, pseudo-IG-fold, TIG-domain, IPT-domain loop-helix; HET: DNA CIT; 2.80A {Mus musculus} PDB: 3n50_A
Probab=66.51 E-value=1.1 Score=42.42 Aligned_cols=40 Identities=20% Similarity=0.287 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q psy9185 156 RDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHL 195 (248)
Q Consensus 156 ~~lN~AF~~LR~~LP~~~~~~kKLSKietLr~Ai~YI~~L 195 (248)
-.|.-+|.+|.+.||-......+|.|--||+.|.+++..|
T Consensus 320 PtIdygfqRLqK~iPrhpGdpErLpKevilkRaadl~eal 359 (402)
T 3mlp_A 320 PTIDYGFQRLQKVIPRHPGDPERLPKEVILKRAADLVEAL 359 (402)
T ss_dssp CTTTTTTTTTTTC-----------CHHHHHHHHHHHHHHH
T ss_pred CccccchhhhcccCCCCCCChHhChHHHHHHHHHHHHHHh
Confidence 5688999999999995444569999999999999977766
No 21
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=46.03 E-value=13 Score=22.51 Aligned_cols=20 Identities=20% Similarity=0.165 Sum_probs=17.2
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q psy9185 178 KLSKIESLRMAIRYIRHLQC 197 (248)
Q Consensus 178 KLSKietLr~Ai~YI~~L~~ 197 (248)
+|.+|.+|..|.+|+...+.
T Consensus 1 ~~~nvq~LLeAAeyLErrEr 20 (26)
T 1pd7_B 1 VRMNIQMLLEAADYLERRER 20 (26)
T ss_dssp CCCSTHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHH
Confidence 46689999999999998775
Done!