RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9185
         (248 letters)



>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus)
           [TaxId: 10090]}
          Length = 68

 Score = 67.2 bits (164), Expect = 1e-15
 Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 4/67 (5%)

Query: 134 RKISDSERDYKKTACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIR 193
           RK ++++R  +K A  RER R+  +N AF+ L+        P ++L K+E LR AIRYI 
Sbjct: 5   RKTTNADR--RKAATMRERRRLSKVNEAFETLKRSTSSN--PNQRLPKVEILRNAIRYIE 60

Query: 194 HLQCLLE 200
            LQ LL 
Sbjct: 61  GLQALLR 67


>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 65

 Score = 62.9 bits (153), Expect = 4e-14
 Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 2/59 (3%)

Query: 140 ERDYKKTACDRERTRMRDMNRAFDLLRNRLPPC--KPPGKKLSKIESLRMAIRYIRHLQ 196
           +   +    + ER R   +N     L   +P    +      SK   L  A  YI+ L+
Sbjct: 2   DEKRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELR 60


>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 83

 Score = 58.3 bits (141), Expect = 4e-12
 Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 2/57 (3%)

Query: 144 KKTACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQCLLE 200
           +      ER R   +  +F  LR+ +P     G+K S+ + L  A  YI++++    
Sbjct: 3   RAHHNALERKRRDHIKDSFHSLRDSVPSL--QGEKASRAQILDKATEYIQYMRRKNH 57


>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 63

 Score = 55.7 bits (134), Expect = 2e-11
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 3/56 (5%)

Query: 144 KKTACDRERTRMRDMNRAFDLLRNRLPPC---KPPGKKLSKIESLRMAIRYIRHLQ 196
           +++    E+ R   +  A   L + +P     +      SK  ++  A RYIRHLQ
Sbjct: 3   RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQ 58


>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 88

 Score = 54.5 bits (131), Expect = 1e-10
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 144 KKTACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQ 196
           ++T    ER R  ++ R+F  LR+++P      +K  K+  L+ A  YI  +Q
Sbjct: 7   RRTHNVLERQRRNELKRSFFALRDQIPEL-ENNEKAPKVVILKKATAYILSVQ 58


>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 79

 Score = 53.8 bits (129), Expect = 2e-10
 Identities = 10/53 (18%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 144 KKTACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQ 196
           + T  + E+ R   +  + + L+  +P   P   + + +  L  A  +I+ L+
Sbjct: 2   RSTHNEMEKNRRAHLRLSLEKLKGLVPLG-PDSSRHTTLSLLTKAKLHIKKLE 53


>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}
          Length = 80

 Score = 48.8 bits (116), Expect = 1e-08
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 3/58 (5%)

Query: 139 SERDYKKTACDRERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQ 196
           S  + +      E+     +N     L++ +   +    KL+K   LR AI YIR LQ
Sbjct: 2   SRGEKRTAHNAIEKRYRSSINDKIIELKDLVVGTE---AKLNKSAVLRKAIDYIRFLQ 56


>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 61

 Score = 36.2 bits (84), Expect = 2e-04
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 6/45 (13%)

Query: 152 RTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQ 196
           R+ + D       L++ +        K+ K   LR AI YI++LQ
Sbjct: 1   RSSINDK---IIELKDLVMGTD---AKMHKSGVLRKAIDYIKYLQ 39


>d2pmra1 a.8.11.1 (A:3-77) Uncharacterized protein MTH1690
           {Methanobacterium thermoautotrophicum [TaxId: 145262]}
          Length = 75

 Score = 25.8 bits (57), Expect = 1.4
 Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 6/58 (10%)

Query: 150 RERTRMRDMNRAFDLLRNRLPPCKPPGKKLSKIESLRMAIRYIRHLQCLLEYGPEYET 207
           RER     + +  +LL   L   K       +   +  A+ Y       LE G ++ T
Sbjct: 2   RER-----IEKDLELLEKNLMEMKSIKLSDDEEAVVERALNYRDDSVYYLEKG-DHIT 53


>d2p41a1 c.66.1.25 (A:8-264) An RNA cap
           (nucleoside-2'-O-)-methyltransferase domain of RNA
           polymerase NS5 {Dengue virus 2 [TaxId: 11060]}
          Length = 257

 Score = 27.2 bits (60), Expect = 1.7
 Identities = 6/18 (33%), Positives = 8/18 (44%)

Query: 229 DDSCVDCGSAIGQWTQYA 246
           +   VD G   G W+ Y 
Sbjct: 67  EGKVVDLGCGRGGWSYYC 84


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.127    0.371 

Gapped
Lambda     K      H
   0.267   0.0680    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 855,872
Number of extensions: 36775
Number of successful extensions: 66
Number of sequences better than 10.0: 1
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 11
Length of query: 248
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 165
Effective length of database: 1,268,006
Effective search space: 209220990
Effective search space used: 209220990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (23.9 bits)