BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9188
(104 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SAW|A Chain A, X-Ray Structure Of Homo Sapiens Protein Flj36880
pdb|1SAW|B Chain B, X-Ray Structure Of Homo Sapiens Protein Flj36880
Length = 225
Score = 98.6 bits (244), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 44/84 (52%), Positives = 60/84 (71%)
Query: 6 LQKHAREHGLPWTVGKSFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLF 65
+Q ++ GLPWT+ KSF +CPVS F+P+ +I DP + LWLKVNGELRQ+ T M+F
Sbjct: 109 VQDECKKKGLPWTLAKSFTASCPVSAFVPKEKIPDPHKLKLWLKVNGELRQEGETSSMIF 168
Query: 66 KTGDLISYISQHMTLEPYDLILTG 89
+ISY+S+ +TLE D+ILTG
Sbjct: 169 SIPYIISYVSKIITLEEGDIILTG 192
>pdb|1NR9|A Chain A, Crystal Structure Of Escherichia Coli 1262 (Apc5008),
Putative Isomerase
pdb|1NR9|B Chain B, Crystal Structure Of Escherichia Coli 1262 (Apc5008),
Putative Isomerase
pdb|1NR9|C Chain C, Crystal Structure Of Escherichia Coli 1262 (Apc5008),
Putative Isomerase
pdb|1NR9|D Chain D, Crystal Structure Of Escherichia Coli 1262 (Apc5008),
Putative Isomerase
Length = 223
Score = 76.6 bits (187), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 6 LQKHAREHGLPWTVGKSFDTACPVSDFIPEHEIK-DPDDVPLWLKVNGELRQKSTTGDML 64
+Q ++ G PW K+FD +CP+S FIP E DP + L L VNGE RQ+ TT D +
Sbjct: 109 VQGKXKKAGQPWEKAKAFDNSCPLSGFIPAAEFTGDPQNTTLSLSVNGEQRQQGTTADXI 168
Query: 65 FKTGDLISYISQHMTLEPYDLILTG 89
K LI+Y S+ TL+ D++LTG
Sbjct: 169 HKIVPLIAYXSKFFTLKAGDVVLTG 193
>pdb|3S52|A Chain A, Crystal Structure Of A Putative Fumarylacetoacetate
Hydrolase Family Protein From Yersinia Pestis Co92
pdb|3S52|B Chain B, Crystal Structure Of A Putative Fumarylacetoacetate
Hydrolase Family Protein From Yersinia Pestis Co92
pdb|3S52|C Chain C, Crystal Structure Of A Putative Fumarylacetoacetate
Hydrolase Family Protein From Yersinia Pestis Co92
pdb|3S52|D Chain D, Crystal Structure Of A Putative Fumarylacetoacetate
Hydrolase Family Protein From Yersinia Pestis Co92
Length = 221
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 48/84 (57%)
Query: 6 LQKHAREHGLPWTVGKSFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLF 65
LQ ++ G PW K+FD +CP+S FIP E D L L +NGE+RQ+ T D +
Sbjct: 110 LQAGFKKAGQPWEKAKAFDGSCPISGFIPVAEFGDAQQADLSLTINGEIRQQGNTRDXIT 169
Query: 66 KTGDLISYISQHMTLEPYDLILTG 89
LISY S+ TL D++LTG
Sbjct: 170 PIIPLISYXSRFFTLRAGDIVLTG 193
>pdb|1WZO|A Chain A, Crystal Structure Of The Hpce From Thermus Thermophilus
Hb8
pdb|1WZO|B Chain B, Crystal Structure Of The Hpce From Thermus Thermophilus
Hb8
pdb|1WZO|C Chain C, Crystal Structure Of The Hpce From Thermus Thermophilus
Hb8
pdb|1WZO|D Chain D, Crystal Structure Of The Hpce From Thermus Thermophilus
Hb8
Length = 246
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 49/76 (64%), Gaps = 4/76 (5%)
Query: 16 PWTVGKSFDTACPVSDFIPEHEIKDPDDVPLWLK--VNGELRQKSTTGDMLFKTGDLISY 73
P K DT P+ F+ E++DP D LWL+ VNGELRQ+ T ML+ +L+ +
Sbjct: 141 PPIRAKGRDTFLPLGPFLVVEEVEDPQD--LWLRAYVNGELRQEGHTSRMLYSVAELLEF 198
Query: 74 ISQHMTLEPYDLILTG 89
IS+ MTLEPYD++LTG
Sbjct: 199 ISEFMTLEPYDVLLTG 214
>pdb|3V77|A Chain A, Crystal Structure Of A Putative Fumarylacetoacetate
IsomeraseHYDROLASE FROM OLEISPIRA ANTARCTICA
pdb|3V77|B Chain B, Crystal Structure Of A Putative Fumarylacetoacetate
IsomeraseHYDROLASE FROM OLEISPIRA ANTARCTICA
pdb|3V77|C Chain C, Crystal Structure Of A Putative Fumarylacetoacetate
IsomeraseHYDROLASE FROM OLEISPIRA ANTARCTICA
pdb|3V77|D Chain D, Crystal Structure Of A Putative Fumarylacetoacetate
IsomeraseHYDROLASE FROM OLEISPIRA ANTARCTICA
pdb|3V77|E Chain E, Crystal Structure Of A Putative Fumarylacetoacetate
IsomeraseHYDROLASE FROM OLEISPIRA ANTARCTICA
pdb|3V77|F Chain F, Crystal Structure Of A Putative Fumarylacetoacetate
IsomeraseHYDROLASE FROM OLEISPIRA ANTARCTICA
Length = 224
Score = 65.1 bits (157), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 54/86 (62%), Gaps = 2/86 (2%)
Query: 6 LQKHAREHGLPWTVGKSFDTACPVSDFIPEHEIKDPD--DVPLWLKVNGELRQKSTTGDM 63
+Q +E G PW KSFD ACP+++F+ + + + + L L+ NG+ +Q+ ++ +
Sbjct: 106 VQDQLKEKGHPWERAKSFDGACPLTEFVAVNLASEDEWQAIGLTLEKNGQFQQQGSSAEX 165
Query: 64 LFKTGDLISYISQHMTLEPYDLILTG 89
LF LI++ S+H +L+P D+ILTG
Sbjct: 166 LFPILPLIAHXSEHFSLQPGDVILTG 191
>pdb|1I7O|A Chain A, Crystal Structure Of Hpce
pdb|1I7O|B Chain B, Crystal Structure Of Hpce
pdb|1I7O|C Chain C, Crystal Structure Of Hpce
pdb|1I7O|D Chain D, Crystal Structure Of Hpce
pdb|1GTT|A Chain A, Crystal Structure Of Hpce
pdb|1GTT|B Chain B, Crystal Structure Of Hpce
pdb|1GTT|C Chain C, Crystal Structure Of Hpce
pdb|1GTT|D Chain D, Crystal Structure Of Hpce
Length = 429
Score = 63.9 bits (154), Expect = 2e-11, Method: Composition-based stats.
Identities = 33/70 (47%), Positives = 45/70 (64%), Gaps = 1/70 (1%)
Query: 21 KSFDTACP-VSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQHMT 79
KS D P +S +P+ I DP ++ L VNGELRQ+ TT D++F LI+Y+S+ MT
Sbjct: 325 KSRDGLTPMLSTIVPKEAIPDPHNLTLRTFVNGELRQQGTTADLIFSVPFLIAYLSEFMT 384
Query: 80 LEPYDLILTG 89
L P D+I TG
Sbjct: 385 LNPGDMIATG 394
Score = 35.8 bits (81), Expect = 0.006, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 16 PWTVGKSFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYIS 75
P K D CP+ + + + + D++ ++ ++NG T D+ L+S +S
Sbjct: 105 PAIKAKCRDGFCPIGETVA---LSNVDNLTIYTEINGRPADHWNTADLQRNAAQLLSALS 161
Query: 76 QHMTLEPYDLILTG 89
+ TL P D IL G
Sbjct: 162 EFATLNPGDAILLG 175
>pdb|1NKQ|A Chain A, Crystal Structure Of Yeast Ynq8, A Fumarylacetoacetate
Hydrolase Family Protein
pdb|1NKQ|B Chain B, Crystal Structure Of Yeast Ynq8, A Fumarylacetoacetate
Hydrolase Family Protein
pdb|1NKQ|C Chain C, Crystal Structure Of Yeast Ynq8, A Fumarylacetoacetate
Hydrolase Family Protein
pdb|1NKQ|D Chain D, Crystal Structure Of Yeast Ynq8, A Fumarylacetoacetate
Hydrolase Family Protein
pdb|1NKQ|E Chain E, Crystal Structure Of Yeast Ynq8, A Fumarylacetoacetate
Hydrolase Family Protein
pdb|1NKQ|F Chain F, Crystal Structure Of Yeast Ynq8, A Fumarylacetoacetate
Hydrolase Family Protein
Length = 259
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Query: 6 LQKHAREHGLPWTVGKSFDTACPVSDFIPEHEIKD-----PDDVPLWLKVNGELRQKSTT 60
+Q A++ GLPWT+ K FDT P+S + + D + VNG+LRQ T
Sbjct: 127 VQDEAKKKGLPWTISKGFDTFXPISAIVSREKFSSYKSNLQDIFRVKCSVNGQLRQDGGT 186
Query: 61 GDMLFKTGDLISYISQHMTLEPYDLILTG 89
L ++ +IS ++LEP D+ILTG
Sbjct: 187 NLXLHPLHKILQHISTXISLEPGDIILTG 215
>pdb|3RR6|A Chain A, Structure Of A Putative Uncharacterized Protein From
Mycobacterium Abscessus Atcc 19977 DSM 44196
Length = 265
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Query: 7 QKHAREHGLPWTVGKSFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFK 66
+ H R G WT K DT CP+ +I DP D+ + +VNG++RQ+S T +L
Sbjct: 153 RDHQRADGQ-WTRAKGHDTFCPLGPWIVTD--LDPADLEIRTEVNGQVRQRSRTSLLLHD 209
Query: 67 TGDLISYISQHMTLEPYDLILTG 89
G ++ ++S MTL P D+ILTG
Sbjct: 210 VGAIVEWVSAVMTLLPGDVILTG 232
>pdb|3QDF|A Chain A, Crystal Structure Of 2-Hydroxyhepta-2,4-Diene-1,7-Dioate
Isomerase From Mycobacterium Marinum
Length = 268
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 17 WTVGKSFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQ 76
WT K DT CPV +I DP D+ L +VNG ++Q + T M+ G ++ +IS
Sbjct: 165 WTRAKGHDTFCPVGPWIVTD--VDPADLELRTEVNGAVKQHARTSLMIHDVGAIVEWISA 222
Query: 77 HMTLEPYDLILTG 89
MTL P DLILTG
Sbjct: 223 VMTLLPGDLILTG 235
>pdb|2DFU|A Chain A, Crystal Structure Of The
2-Hydroxyhepta-2,4-Diene-1,7-Dioate Isomerase From
Thermus Thermophilus Hb8
pdb|2DFU|B Chain B, Crystal Structure Of The
2-Hydroxyhepta-2,4-Diene-1,7-Dioate Isomerase From
Thermus Thermophilus Hb8
pdb|2DFU|C Chain C, Crystal Structure Of The
2-Hydroxyhepta-2,4-Diene-1,7-Dioate Isomerase From
Thermus Thermophilus Hb8
pdb|2DFU|D Chain D, Crystal Structure Of The
2-Hydroxyhepta-2,4-Diene-1,7-Dioate Isomerase From
Thermus Thermophilus Hb8
Length = 264
Score = 55.1 bits (131), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Query: 8 KHAREHGLPWTVGKSFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKT 67
+ ++ L W KS D P+ ++ E ++ +P D + VNG LRQ+ T M+F
Sbjct: 149 RDVQKKDLQWVRAKSADKFLPLGPWL-ETDL-NPQDTWVRTYVNGTLRQEGHTSQMIFSV 206
Query: 68 GDLISYISQHMTLEPYDLILTG 89
+++SYIS MTLEP D++LTG
Sbjct: 207 AEILSYISTFMTLEPLDVVLTG 228
>pdb|4DBF|A Chain A, Crystal Structures Of Cg1458
pdb|4DBF|B Chain B, Crystal Structures Of Cg1458
pdb|4DBH|A Chain A, Crystal Structure Of Cg1458 With Inhibitor
pdb|4DBH|B Chain B, Crystal Structure Of Cg1458 With Inhibitor
Length = 288
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 7/79 (8%)
Query: 17 WTVGKSFDTACPVSDFIPEHEIK--DPDDVPLWLKV--NGE--LRQKSTTGDMLFKTGDL 70
W K DT P+ +I E +I D D++P+ ++ +GE L+Q S + M+ K G++
Sbjct: 180 WARAKGIDTFGPIGPWI-ETDINSIDLDNLPIKARLTHDGETQLKQDSNSNQMIMKMGEI 238
Query: 71 ISYISQHMTLEPYDLILTG 89
I +I+ MTL P D+I TG
Sbjct: 239 IEFITASMTLLPGDVIATG 257
>pdb|3R6O|A Chain A, Crystal Structure Of A Probable
2-Hydroxyhepta-2,4-Diene-1, 7- Dioateisomerase From
Mycobacterium Abscessus
Length = 329
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 48 LKVNGELRQKSTTGDMLFKTGDLISYISQHMTLEPYDLILTGKAG 92
L++NGELRQ +T DM +++ +S + L D+ILTG G
Sbjct: 242 LRINGELRQSGSTVDMTLGFAEVVETVSATIALRAGDIILTGTPG 286
>pdb|1GRI|A Chain A, Grb2
pdb|1GRI|B Chain B, Grb2
Length = 217
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 57 KSTTGDML-FKTGDLISYISQHMTLEPYDLILTGKAGFI 94
K+T D L FK GD++ +++ Y L GK GFI
Sbjct: 10 KATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFI 48
>pdb|1AZE|A Chain A, Nmr Structure Of The Complex Between The C32s-Y7v Mutant
Of The Nsh3 Domain Of Grb2 With A Peptide From Sos, 10
Structures
Length = 56
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 57 KSTTGDML-FKTGDLISYISQHMTLEPYDLILTGKAGFI 94
K+T D L FK GD++ +++ Y L GK GFI
Sbjct: 10 KATADDELSFKRGDILKVLNEESDQNWYKAELNGKDGFI 48
>pdb|4GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, 15 Structures
pdb|3GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, Minimized Average Structure
pdb|2GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, 15 Structures
pdb|1GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, Minimized Average Structure
pdb|1GBR|A Chain A, Orientation Of Peptide Fragments From Sos Proteins Bound
To The N-Terminal Sh3 Domain Of Grb2 Determined By Nmr
Spectroscopy
Length = 74
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 57 KSTTGDML-FKTGDLISYISQHMTLEPYDLILTGKAGFI 94
K+T D L FK GD++ +++ Y L GK GFI
Sbjct: 19 KATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFI 57
>pdb|1S2O|A Chain A, X-Ray Structure Of The Sucrose-Phosphatase (Spp) From
Synechocystis Sp. Pcc6803 At 1.40 A Resolution
pdb|1TJ3|A Chain A, X-Ray Structure Of The Sucrose-Phosphatase (Spp) From
Synechocystis Sp. Pcc6803 In A Closed Conformation
pdb|1TJ4|A Chain A, X-Ray Structure Of The Sucrose-Phosphatase (Spp) From
Synechocystis Sp. Pcc6803 In Complex With Sucrose
pdb|1TJ5|A Chain A, X-Ray Structure Of The Sucrose-Phosphatase (Spp) From
Synechocystis Sp. Pcc6803 In Complex With Sucrose And
Phosphate
pdb|1U2S|A Chain A, X-Ray Structure Of The Sucrose-Phosphatase (Spp) From
Synechocystis Sp. Pcc6803 In Complex With Glucose
pdb|1U2T|A Chain A, X-Ray Structure Of The Sucrose-Phosphatase (Spp) From
Synechocystis Sp. Pcc6803 In Complex With Sucrose6p
pdb|2B1Q|A Chain A, X-ray Structure Of The Sucrose-phosphatase (spp) From
Synechocystis Sp.pcc6803 In Complex With Trehalose
pdb|2B1R|A Chain A, X-Ray Structure Of The Sucrose-Phosphatase (Spp) From
Synechocystis Sp.Pcc6803 In Complex With Cellobiose
pdb|2D2V|A Chain A, X-Ray Structure Of The Sucrose-Phosphatase (Spp) From
Synechocystis Sp.Pcc6803 In Complex With Maltose
Length = 244
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 66 KTGDLISYISQHMTLEPYDLILTGKAGF-ILMFQQSPHSV 104
G+ Y+ QH+ +EP ++ G +G I +F+ S V
Sbjct: 162 NKGNATQYLQQHLAMEPSQTLVCGDSGNDIGLFETSARGV 201
>pdb|3OQ3|B Chain B, Structural Basis Of Type-I Interferon Sequestration By A
Poxvirus Decoy Receptor
Length = 329
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 19 VGKSFDTACP-VSDFIPEHEIKDPDDVPLWLKVNGE---LRQKSTTGDM 63
+G+ F CP + D + H D D+V W K+ L ++ GD+
Sbjct: 43 LGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRVKNGDL 91
>pdb|4HHR|A Chain A, Crystal Structure Of Fatty Acid Alpha-dioxygenase
(arabidopsis Thaliana)
pdb|4HHS|A Chain A, Crystal Structure Of Fatty Acid Alpha-dioxygenase
(arabidopsis Thaliana)
Length = 652
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 8 KHAREHGLPWTVGKSFDTACPVSDFIPEH-EIKDPDDVP 45
K + HG+P+++ + F + + +P+ I D DDVP
Sbjct: 379 KKPQNHGVPYSLTEDFTSVYRMHSLLPDQLHILDIDDVP 417
>pdb|2E9X|B Chain B, The Crystal Structure Of Human Gins Core Complex
pdb|2E9X|F Chain F, The Crystal Structure Of Human Gins Core Complex
Length = 185
Score = 25.4 bits (54), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 41 PDDVPLWLKVNGELRQK 57
P +VPLWL +N + RQK
Sbjct: 41 PVEVPLWLAINLKQRQK 57
>pdb|2Q9Q|A Chain A, The Crystal Structure Of Full Length Human Gins Complex
pdb|2Q9Q|E Chain E, The Crystal Structure Of Full Length Human Gins Complex
Length = 191
Score = 25.4 bits (54), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 41 PDDVPLWLKVNGELRQK 57
P +VPLWL +N + RQK
Sbjct: 47 PVEVPLWLAINLKQRQK 63
>pdb|2EHO|C Chain C, Crystal Structure Of Human Gins Complex
pdb|2EHO|G Chain G, Crystal Structure Of Human Gins Complex
pdb|2EHO|K Chain K, Crystal Structure Of Human Gins Complex
Length = 186
Score = 25.4 bits (54), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 41 PDDVPLWLKVNGELRQK 57
P +VPLWL +N + RQK
Sbjct: 42 PVEVPLWLAINLKQRQK 58
>pdb|3L2P|A Chain A, Human Dna Ligase Iii Recognizes Dna Ends By Dynamic
Switching Between Two Dna Bound States
Length = 579
Score = 25.0 bits (53), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 39 KDPDDVPLWLKVN 51
KDP +P WLKVN
Sbjct: 498 KDPSKIPSWLKVN 510
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.140 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,422,311
Number of Sequences: 62578
Number of extensions: 134672
Number of successful extensions: 266
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 236
Number of HSP's gapped (non-prelim): 29
length of query: 104
length of database: 14,973,337
effective HSP length: 69
effective length of query: 35
effective length of database: 10,655,455
effective search space: 372940925
effective search space used: 372940925
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)