Query psy9188
Match_columns 104
No_of_seqs 142 out of 1164
Neff 6.9
Searched_HMMs 29240
Date Fri Aug 16 21:09:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9188.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9188hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l53_A Putative fumarylacetoac 100.0 1.6E-37 5.6E-42 226.7 7.7 103 1-103 101-205 (224)
2 3s52_A Putative fumarylacetoac 100.0 2.1E-37 7.1E-42 225.5 4.9 103 1-103 105-207 (221)
3 1saw_A Hypothetical protein FL 100.0 5.6E-35 1.9E-39 212.9 9.0 103 1-103 104-206 (225)
4 3r6o_A 2-hydroxyhepta-2,4-dien 100.0 4.9E-35 1.7E-39 223.7 8.5 103 1-103 190-304 (329)
5 4dbf_A 2-hydroxyhepta-2,4-dien 100.0 7.9E-35 2.7E-39 219.3 4.9 99 1-103 168-271 (288)
6 3rr6_A Putative uncharacterize 100.0 2.2E-34 7.4E-39 214.8 4.5 97 1-103 150-246 (265)
7 1nkq_A Hypothetical 28.8 kDa p 100.0 1.9E-33 6.6E-38 208.9 6.8 103 1-103 122-229 (259)
8 1wzo_A HPCE; structural genomi 100.0 2.7E-33 9.3E-38 206.2 7.5 100 1-103 129-228 (246)
9 2dfu_A Probable 2-hydroxyhepta 100.0 1.3E-32 4.6E-37 204.8 7.3 97 1-103 146-242 (264)
10 3lzk_A Fumarylacetoacetate hyd 100.0 5.4E-32 1.8E-36 208.9 6.4 91 1-94 192-289 (359)
11 2q18_X 2-keto-3-deoxy-D-arabin 100.0 6.3E-32 2.2E-36 203.3 5.8 100 1-103 165-272 (293)
12 1gtt_A 4-hydroxyphenylacetate 100.0 1.7E-31 5.7E-36 209.7 8.0 99 1-103 308-408 (429)
13 1gtt_A 4-hydroxyphenylacetate 100.0 5.8E-30 2E-34 200.9 8.0 95 1-103 95-189 (429)
14 1hyo_A Fumarylacetoacetate hyd 99.9 3.4E-27 1.2E-31 185.3 5.3 98 1-101 236-363 (421)
15 2wqt_A 2-keto-4-pentenoate hyd 99.9 1.4E-25 4.8E-30 167.0 5.5 84 19-103 149-246 (270)
16 2eb4_A 2-OXO-HEPT-3-ENE-1,7-di 99.9 1.9E-26 6.5E-31 171.4 0.4 87 16-103 159-252 (267)
17 2kl0_A Putative thiamin biosyn 82.2 2.1 7.2E-05 25.1 4.0 45 46-95 1-65 (73)
18 1f0z_A THis protein; ubiquitin 77.8 2.2 7.7E-05 24.1 3.1 25 47-75 2-26 (66)
19 1tyg_B YJBS; alpha beta barrel 74.6 3.5 0.00012 25.1 3.5 30 43-75 18-47 (87)
20 2cu3_A Unknown function protei 72.5 9.2 0.00031 21.3 4.8 23 48-75 2-24 (64)
21 1ryj_A Unknown; beta/alpha pro 67.9 3.3 0.00011 23.8 2.2 27 45-75 4-34 (70)
22 2k5p_A THis protein, thiamine- 64.9 13 0.00045 21.9 4.5 48 46-95 1-69 (78)
23 1gxc_A CHK2, CDS1, serine/thre 60.0 5.3 0.00018 26.2 2.3 19 76-94 116-134 (149)
24 1mg4_A Doublecortin, doublecor 57.6 6.9 0.00023 25.0 2.4 64 40-104 12-89 (113)
25 4egx_A Kinesin-like protein KI 50.6 10 0.00035 26.0 2.5 15 76-90 151-165 (184)
26 4ejq_A Kinesin-like protein KI 49.8 11 0.00038 24.9 2.5 15 76-90 121-135 (154)
27 3fm8_A Kinesin-like protein KI 48.4 11 0.00038 24.2 2.3 14 77-90 102-115 (124)
28 2pie_A E3 ubiquitin-protein li 46.4 14 0.00047 23.8 2.5 15 77-91 89-103 (138)
29 3hx1_A SLR1951 protein; P74513 45.8 17 0.00058 23.3 2.9 15 78-92 94-108 (131)
30 3gqs_A Adenylate cyclase-like 42.5 9.5 0.00032 23.3 1.2 14 77-90 81-94 (106)
31 4h87_A Kanadaptin; FHA domain 42.1 17 0.0006 23.2 2.5 15 77-91 108-122 (130)
32 3els_A PRE-mRNA leakage protei 41.7 12 0.00043 24.9 1.8 16 77-92 131-146 (158)
33 3elv_A PRE-mRNA leakage protei 39.2 17 0.00058 25.6 2.2 16 77-92 178-193 (205)
34 1g3g_A Protien kinase SPK1; FH 39.1 22 0.00075 23.6 2.7 15 77-91 121-135 (164)
35 1wln_A Afadin; beta sandwich, 39.0 11 0.00039 23.5 1.2 15 76-90 91-105 (120)
36 1g6g_A Protein kinase RAD53; b 38.4 18 0.00063 22.8 2.2 16 77-92 93-108 (127)
37 3po8_A RV0020C protein, putati 38.0 18 0.00061 21.7 2.0 15 77-91 76-90 (100)
38 3oun_A Putative uncharacterize 35.1 20 0.00068 24.0 2.0 14 77-90 138-151 (157)
39 2csw_A Ubiquitin ligase protei 32.1 16 0.00055 23.7 1.1 16 77-92 97-112 (145)
40 1uht_A Expressed protein; FHA 30.8 11 0.00039 23.4 0.2 16 77-92 90-105 (118)
41 1rws_A Hypothetical protein PF 30.8 28 0.00097 20.0 2.0 30 45-93 46-75 (77)
42 2xt9_B Putative signal transdu 28.9 33 0.0011 21.1 2.2 14 77-90 84-97 (115)
43 4gjz_A Lysine-specific demethy 28.6 18 0.00063 24.2 1.0 12 77-88 202-213 (235)
44 2jpe_A Nuclear inhibitor of pr 28.6 36 0.0012 21.7 2.4 18 76-93 113-130 (140)
45 2dnf_A Doublecortin domain-con 28.2 16 0.00054 23.0 0.5 44 42-85 13-60 (108)
46 1r21_A Antigen KI-67; beta san 27.7 30 0.001 21.6 1.9 15 76-90 86-100 (128)
47 2i6v_A General secretion pathw 27.3 25 0.00085 20.3 1.3 12 77-88 34-45 (87)
48 2jqj_A DNA damage response pro 27.1 38 0.0013 22.0 2.3 14 77-90 100-113 (151)
49 2k1g_A Lipoprotein SPR; soluti 26.8 22 0.00074 23.1 1.0 13 78-90 66-78 (135)
50 3gt2_A Putative uncharacterize 25.9 28 0.00095 22.5 1.4 14 78-91 88-101 (142)
51 2jyx_A Lipoprotein SPR; soluti 25.4 28 0.00095 22.3 1.4 14 78-91 66-79 (136)
52 2eaq_A LIM domain only protein 25.4 28 0.00096 19.9 1.3 11 78-88 44-54 (90)
53 1dmz_A Protein (protein kinase 24.7 29 0.00098 22.9 1.3 12 77-88 97-108 (158)
54 2j58_A WZA, outer membrane lip 24.3 58 0.002 24.4 3.1 39 44-90 191-231 (359)
55 2i4s_A General secretion pathw 24.1 30 0.001 20.7 1.3 10 79-88 54-63 (105)
56 2pa1_A PDZ and LIM domain prot 24.0 31 0.0011 19.6 1.3 11 78-88 42-52 (87)
57 2odd_A Protein CBFA2T1; MYND z 23.8 18 0.00061 20.1 0.1 14 79-92 3-16 (64)
58 2pkt_A PDZ and LIM domain prot 23.7 32 0.0011 19.7 1.3 11 78-88 43-53 (91)
59 2kb3_A Oxoglutarate dehydrogen 23.6 31 0.0011 22.4 1.3 14 77-90 119-132 (143)
60 1m5z_A GRIP, AMPA receptor int 23.5 32 0.0011 19.7 1.3 10 79-88 49-58 (91)
61 2hbw_A NLP/P60 protein; NLP/P6 23.4 31 0.001 24.5 1.3 15 78-92 159-173 (235)
62 1eik_A RNA polymerase subunit 23.3 33 0.0011 20.5 1.3 14 74-87 45-58 (77)
63 4ayb_H DNA-directed RNA polyme 23.0 24 0.00081 21.4 0.6 13 74-86 51-63 (84)
64 3kw0_A Cysteine peptidase; str 22.8 32 0.0011 23.9 1.3 13 78-90 38-50 (214)
65 1vb7_A PDZ and LIM domain 2; P 22.0 36 0.0012 19.7 1.3 10 79-88 47-56 (94)
66 2q9v_A Membrane-associated gua 21.8 36 0.0012 19.4 1.3 9 80-88 46-54 (90)
67 2jxo_A Ezrin-radixin-moesin-bi 21.7 36 0.0012 19.8 1.3 10 79-88 50-59 (98)
68 2rcz_A Tight junction protein 21.7 37 0.0013 18.6 1.3 9 80-88 40-48 (81)
69 2kjp_A Uncharacterized protein 21.4 36 0.0012 20.0 1.2 10 79-88 17-26 (91)
70 2vsp_A PDZ domain-containing p 21.4 37 0.0013 19.4 1.3 11 78-88 43-53 (91)
71 2q5w_D Molybdopterin convertin 21.3 1.1E+02 0.0037 16.9 3.3 28 46-92 47-74 (77)
72 1mfg_A ERB-B2 interacting prot 21.2 38 0.0013 19.6 1.3 10 79-88 51-60 (95)
73 2q3g_A PDZ and LIM domain prot 21.1 38 0.0013 19.3 1.3 10 79-88 44-53 (89)
74 1rgw_A ZAsp protein; PDZ, cyph 21.1 34 0.0011 19.2 1.0 11 78-88 41-51 (85)
75 2qkv_A Inactivation-NO-after-p 20.9 39 0.0013 19.7 1.3 9 80-88 50-58 (96)
76 3bpu_A Membrane-associated gua 20.9 39 0.0013 19.2 1.3 11 78-88 41-51 (88)
77 2uzc_A Human pdlim5, PDZ and L 20.8 39 0.0013 19.1 1.3 10 79-88 44-53 (88)
78 2vwr_A Ligand of NUMB protein 20.8 39 0.0013 19.5 1.3 10 79-88 47-56 (95)
79 2i04_A Membrane-associated gua 20.8 40 0.0014 19.0 1.3 9 80-88 44-52 (85)
80 2w4f_A Protein LAP4; structura 20.7 39 0.0013 19.5 1.3 10 79-88 51-60 (97)
81 2eeg_A PDZ and LIM domain prot 20.7 39 0.0013 19.5 1.3 11 78-88 48-58 (94)
82 1ihj_A INAD; intermolecular di 20.6 40 0.0014 19.5 1.3 9 80-88 56-64 (98)
83 1hmj_A RPB5, protein (subunit 20.5 35 0.0012 20.4 1.0 13 75-87 44-56 (78)
84 1ujv_A Membrane associated gua 20.3 39 0.0014 19.8 1.2 13 76-88 44-56 (96)
85 2qg1_A Multiple PDZ domain pro 20.2 41 0.0014 19.2 1.3 9 80-88 48-56 (92)
86 2he4_A Na(+)/H(+) exchange reg 20.1 42 0.0014 19.1 1.3 10 79-88 45-54 (90)
87 2jil_A GRIP1 protein, glutamat 20.1 41 0.0014 19.4 1.3 9 80-88 51-59 (97)
No 1
>3l53_A Putative fumarylacetoacetate isomerase/hydrolase; structural genomics, PSI-2, protein structure initiative; HET: TAR; 2.10A {Oleispira antarctica} PDB: 3v77_A*
Probab=100.00 E-value=1.6e-37 Score=226.65 Aligned_cols=103 Identities=31% Similarity=0.554 Sum_probs=99.7
Q ss_pred CchhhhhhHHHhCCCCCcCcccCCCCcccCCcccCC--CCCCCCCeeEEEEECCEEEeecccCccCCCHHHHHHHHHcCC
Q psy9188 1 MLFLFLQKHAREHGLPWTVGKSFDTACPVSDFIPEH--EIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQHM 78 (104)
Q Consensus 1 ~TaRd~q~~~~~~~~~~~~~K~~d~~~p~Gp~i~~~--~~~~~~~l~i~~~vNG~~~q~~~t~~m~~~~~~lia~~s~~~ 78 (104)
+|+||+|.++++++++|.++|+||+|||+|||++++ ++.|+.+++++++|||+++|++++++|+|+++++|+|+|+++
T Consensus 101 vs~Rd~q~~~~~~g~~w~~aK~fd~~~plGp~v~~~~~~~~d~~~l~i~l~vNGe~~q~g~t~~mi~~~~~lia~lS~~~ 180 (224)
T 3l53_A 101 LTLRDVQDQLKEKGHPWERAKSFDGACPLTEFVAVNLASEDEWQAIGLTLEKNGQFQQQGSSAEMLFPILPLIAHMSEHF 180 (224)
T ss_dssp CEEHHHHHHHHHTTCCSHHHHSSTTSEEECCBBCCCCSSGGGGGGEEEEEEETTEEEEEEEGGGCSSCHHHHHHHHHHHS
T ss_pred eEhHHhhhhhhhcCCCcceeeccCCCcccCCcEeCchhhcCChhccEEEEEECCEEEEEEcHHHhcCCHHHHHHHHHCCC
Confidence 689999999998999999999999999999999888 888999999999999999999999999999999999999999
Q ss_pred ccCCCcEEEcCCCCCcccccCCCcc
Q psy9188 79 TLEPYDLILTGKAGFILMFQQSPHS 103 (104)
Q Consensus 79 tL~pGDvi~tGTp~g~~~~~~g~~~ 103 (104)
+|+|||||+||||+|++++++||+.
T Consensus 181 tL~pGDvI~TGTp~Gvg~l~~GD~v 205 (224)
T 3l53_A 181 SLQPGDVILTGTPAGVGPLEVGDSL 205 (224)
T ss_dssp CBCTTCEEECCCCSCCEECCTTCEE
T ss_pred CcCCCCEEEcCCCCCCEEcCCCCEE
Confidence 9999999999999999999999975
No 2
>3s52_A Putative fumarylacetoacetate hydrolase family Pro; csgid, structural genomics, center for structural genomics O infectious diseases; 2.01A {Yersinia pestis} SCOP: d.177.1.1 PDB: 1nr9_A
Probab=100.00 E-value=2.1e-37 Score=225.55 Aligned_cols=103 Identities=37% Similarity=0.576 Sum_probs=99.1
Q ss_pred CchhhhhhHHHhCCCCCcCcccCCCCcccCCcccCCCCCCCCCeeEEEEECCEEEeecccCccCCCHHHHHHHHHcCCcc
Q psy9188 1 MLFLFLQKHAREHGLPWTVGKSFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQHMTL 80 (104)
Q Consensus 1 ~TaRd~q~~~~~~~~~~~~~K~~d~~~p~Gp~i~~~~~~~~~~l~i~~~vNG~~~q~~~t~~m~~~~~~lia~~s~~~tL 80 (104)
+|+||+|.+++.++.+|.++|+||+|||+|||++.++++|+.+++++++|||+++|++++++|+|+++++|+|+|++++|
T Consensus 105 vs~Rd~q~~~~~~~~~~~~aK~~d~~~plGp~i~~~~~~d~~~l~i~l~vNGe~~q~g~t~~mi~~~~~lia~lS~~~tL 184 (221)
T 3s52_A 105 LTLRELQAGFKKAGQPWEKAKAFDGSCPISGFIPVAEFGDAQQADLSLTINGEIRQQGNTRDMITPIIPLISYMSRFFTL 184 (221)
T ss_dssp CEEHHHHHHHHHHTCCSHHHHSSTTCEEECCBEEHHHHCCGGGCEEEEEETTEEEEEEEGGGBSSCHHHHHHHHHHHSCB
T ss_pred eEHHHHhhhhhccCCCcceeecCCCCccccCceehhhcCCccceEEEEEECCEEEEEEcHHHccCCHHHHHHHHhCCCCc
Confidence 68999999988889999999999999999999977788899999999999999999999999999999999999999999
Q ss_pred CCCcEEEcCCCCCcccccCCCcc
Q psy9188 81 EPYDLILTGKAGFILMFQQSPHS 103 (104)
Q Consensus 81 ~pGDvi~tGTp~g~~~~~~g~~~ 103 (104)
+|||||+||||+|++++++||+.
T Consensus 185 ~pGDvI~TGTp~Gvg~l~~GD~v 207 (221)
T 3s52_A 185 RAGDIVLTGTPQGVGPMQSGDML 207 (221)
T ss_dssp CTTCEEECCCCSCCEEECTTCEE
T ss_pred CCCCEEEeCCCCcceecCCCCEE
Confidence 99999999999999999999974
No 3
>1saw_A Hypothetical protein FLJ36880; structural genomics, fumarylacetoacetatehydrolase family, unknown function; 2.20A {Homo sapiens} SCOP: d.177.1.1
Probab=100.00 E-value=5.6e-35 Score=212.89 Aligned_cols=103 Identities=44% Similarity=0.755 Sum_probs=98.9
Q ss_pred CchhhhhhHHHhCCCCCcCcccCCCCcccCCcccCCCCCCCCCeeEEEEECCEEEeecccCccCCCHHHHHHHHHcCCcc
Q psy9188 1 MLFLFLQKHAREHGLPWTVGKSFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQHMTL 80 (104)
Q Consensus 1 ~TaRd~q~~~~~~~~~~~~~K~~d~~~p~Gp~i~~~~~~~~~~l~i~~~vNG~~~q~~~t~~m~~~~~~lia~~s~~~tL 80 (104)
+|+||+|.++++.+.+|..+|+||+|||+|||++.+++.|+.+++++++|||+++|++++++|+|+++++|+|+|++++|
T Consensus 104 vt~r~~q~~~~~~~~~~~~aK~~d~~~plGp~v~~~~~~d~~~l~l~l~vNGe~~q~g~~~~mi~~~~~lia~ls~~~tL 183 (225)
T 1saw_A 104 MTARDVQDECKKKGLPWTLAKSFTASCPVSAFVPKEKIPDPHKLKLWLKVNGELRQEGETSSMIFSIPYIISYVSKIITL 183 (225)
T ss_dssp CEEHHHHHHHHHHTCCSHHHHCSTTCEEECCCEETTSCSCTTSCEEEEEETTEEEEEEEGGGBSSCHHHHHHHHHTTSCB
T ss_pred ccHHHHhhhhhccCCCceEeecCCCCEecCCcccHHHcCCCceeEEEEEECCEEEEEEcHHHcCCCHHHHHHHHhCCCCc
Confidence 68999999887778999999999999999999988888899999999999999999999999999999999999999999
Q ss_pred CCCcEEEcCCCCCcccccCCCcc
Q psy9188 81 EPYDLILTGKAGFILMFQQSPHS 103 (104)
Q Consensus 81 ~pGDvi~tGTp~g~~~~~~g~~~ 103 (104)
+|||||+||||+|++++++||++
T Consensus 184 ~~GDvI~TGTp~Gvg~l~~Gd~v 206 (225)
T 1saw_A 184 EEGDIILTGTPKGVGPVKENDEI 206 (225)
T ss_dssp CTTCEEECCCCSCCEEECTTCEE
T ss_pred CCCCEEEcCCCCCceeCCCCCEE
Confidence 99999999999999999999974
No 4
>3r6o_A 2-hydroxyhepta-2,4-diene-1, 7-dioateisomerase; ssgcid, struc genomics, seattle structural genomics center for infectious isomerase; 1.95A {Mycobacterium abscessus}
Probab=100.00 E-value=4.9e-35 Score=223.73 Aligned_cols=103 Identities=22% Similarity=0.294 Sum_probs=94.2
Q ss_pred CchhhhhhH----HHhCCCCCcCcccCCCCcccCCcc-cCCCCCCCCCeeEEEEECCEEEeecccCccCCCHHHHHHHHH
Q psy9188 1 MLFLFLQKH----AREHGLPWTVGKSFDTACPVSDFI-PEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYIS 75 (104)
Q Consensus 1 ~TaRd~q~~----~~~~~~~~~~~K~~d~~~p~Gp~i-~~~~~~~~~~l~i~~~vNG~~~q~~~t~~m~~~~~~lia~~s 75 (104)
+|+||+|.. .+..+.+|.++|+||+|||+|||+ ++++++|+.++.|+++|||+++|++++++|+|++++||+|+|
T Consensus 190 vSaRd~q~~~g~~~~~~~~~w~~aK~fd~~~plGP~ivt~del~d~~~l~l~l~vNGe~~q~g~t~dMif~~~~lIa~lS 269 (329)
T 3r6o_A 190 ITARDVALPFGFGGSPLQAQVVRGKGYPTFCPTGPWLFTTGSDTTFETFDFELRINGELRQSGSTVDMTLGFAEVVETVS 269 (329)
T ss_dssp CEEHHHHCTTC------CCCHHHHHCSTTSEEBCSCEEECTTCSSCCCCEEEEEETTEEEEEEEGGGCSSCHHHHHHHHH
T ss_pred eEHHHHhhhhcccccccCCccccccCcCcCcccCCeEcChhhcCChhhcEEEEEECCEEEEecCHHHhcCCHHHHHHHHH
Confidence 689999863 223378899999999999999997 899999999999999999999999999999999999999999
Q ss_pred cCCccCCCcEEEcCCCCCcc-------cccCCCcc
Q psy9188 76 QHMTLEPYDLILTGKAGFIL-------MFQQSPHS 103 (104)
Q Consensus 76 ~~~tL~pGDvi~tGTp~g~~-------~~~~g~~~ 103 (104)
++++|+|||||+||||+|++ ++++||+.
T Consensus 270 ~~~tL~pGDvI~TGTp~GvG~~~~p~~~l~~GD~V 304 (329)
T 3r6o_A 270 ATIALRAGDIILTGTPGGCGFQFDPPRYLRPGDVI 304 (329)
T ss_dssp TTSCBCTTCEEECCCCSCCGGGSSSCCCCCTTCEE
T ss_pred cCCCcCCCCEEEcCCccccCCCCCCCccCCCCCEE
Confidence 99999999999999999998 79999974
No 5
>4dbf_A 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase; oxaloacetate decarboxylase; 1.90A {Corynebacterium glutamicum} PDB: 4dbh_A
Probab=100.00 E-value=7.9e-35 Score=219.30 Aligned_cols=99 Identities=27% Similarity=0.399 Sum_probs=92.0
Q ss_pred CchhhhhhHHHhCCCCCcCcccCCCCcccCCcc-cCCCCCCCCCeeEEEEECC----EEEeecccCccCCCHHHHHHHHH
Q psy9188 1 MLFLFLQKHAREHGLPWTVGKSFDTACPVSDFI-PEHEIKDPDDVPLWLKVNG----ELRQKSTTGDMLFKTGDLISYIS 75 (104)
Q Consensus 1 ~TaRd~q~~~~~~~~~~~~~K~~d~~~p~Gp~i-~~~~~~~~~~l~i~~~vNG----~~~q~~~t~~m~~~~~~lia~~s 75 (104)
+|+||+|.. +.+|.++|+||+|||+|||| +..++.|+.+++|+++||| +++|++++++|+|++++||+|+|
T Consensus 168 vsaRd~Q~~----~~~w~~aK~fd~~~plGP~ivt~~~~~d~~~l~i~~~vNG~~~~e~~Q~~~t~~mi~~~~~lIa~lS 243 (288)
T 4dbf_A 168 VSSRDLQFA----DGQWARAKGIDTFGPIGPWIETDINSIDLDNLPIKARLTHDGETQLKQDSNSNQMIMKMGEIIEFIT 243 (288)
T ss_dssp CEEHHHHHH----HSSSHHHHHSTTCEEEEEEEECCGGGSCTTSCEEEEEEEETTEEEEEEEEEGGGBSSCHHHHHHHHH
T ss_pred eEhHHhhhc----cCCccccccCCCCceeCCccccccccCCccccEEEEEEcCCcceEEEEecCHHHhcCCHHHHHHHHh
Confidence 689999985 46899999999999999998 5444458999999999999 99999999999999999999999
Q ss_pred cCCccCCCcEEEcCCCCCcccccCCCcc
Q psy9188 76 QHMTLEPYDLILTGKAGFILMFQQSPHS 103 (104)
Q Consensus 76 ~~~tL~pGDvi~tGTp~g~~~~~~g~~~ 103 (104)
+++||+|||||+||||+|++++++||+.
T Consensus 244 ~~~tL~pGDvI~TGTP~Gvg~l~~GD~v 271 (288)
T 4dbf_A 244 ASMTLLPGDVIATGSPAGTEAMVDGDYI 271 (288)
T ss_dssp TTSCBCTTCEEECCCCSCCCBCCTTCEE
T ss_pred CCCCcCCCCEEEcCCCCCCeecCCCCEE
Confidence 9999999999999999999999999974
No 6
>3rr6_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.58A {Mycobacterium abscessus} PDB: 3qdf_A
Probab=100.00 E-value=2.2e-34 Score=214.77 Aligned_cols=97 Identities=32% Similarity=0.492 Sum_probs=90.7
Q ss_pred CchhhhhhHHHhCCCCCcCcccCCCCcccCCcccCCCCCCCCCeeEEEEECCEEEeecccCccCCCHHHHHHHHHcCCcc
Q psy9188 1 MLFLFLQKHAREHGLPWTVGKSFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQHMTL 80 (104)
Q Consensus 1 ~TaRd~q~~~~~~~~~~~~~K~~d~~~p~Gp~i~~~~~~~~~~l~i~~~vNG~~~q~~~t~~m~~~~~~lia~~s~~~tL 80 (104)
+|+||+|.. +.+|.++|+||+|||+|||+.. ++ |+.+++|+++|||+++|++++++|+|+++++|+|+|+++||
T Consensus 150 vsaRd~q~~----~~~w~~aK~fd~~~plGP~ivt-~~-d~~~l~i~~~vNGe~~q~g~t~~mi~~~~~lIa~lS~~~tL 223 (265)
T 3rr6_A 150 VSARDHQRA----DGQWTRAKGHDTFCPLGPWIVT-DL-DPADLEIRTEVNGQVRQRSRTSLLLHDVGAIVEWVSAVMTL 223 (265)
T ss_dssp CEEHHHHHH----HSSSHHHHHSTTCEEEEEEEES-SC-CGGGCEEEEEETTEEEEEEEGGGBSSCHHHHHHHHHHHSCB
T ss_pred eEhHHhhhc----cCCcceecccCCCcccCCcCcC-CC-CcccCEEEEEECCEEEEEECHHhhcCCHHHHHHHHhcCCCc
Confidence 689999974 4789999999999999999843 35 88999999999999999999999999999999999999999
Q ss_pred CCCcEEEcCCCCCcccccCCCcc
Q psy9188 81 EPYDLILTGKAGFILMFQQSPHS 103 (104)
Q Consensus 81 ~pGDvi~tGTp~g~~~~~~g~~~ 103 (104)
+|||||+||||+|++++++||+.
T Consensus 224 ~pGDvI~TGTp~Gvg~l~~GD~v 246 (265)
T 3rr6_A 224 LPGDVILTGTPEGVGPIVDGDTV 246 (265)
T ss_dssp CTTCEEECCCCSCCEECCTTCEE
T ss_pred CCCCEEEeCCCCCceeCCCCCEE
Confidence 99999999999999999999974
No 7
>1nkq_A Hypothetical 28.8 kDa protein in PSD1-SKO1 intergenic region; dimer, PSI, protein structure initiative; 2.20A {Saccharomyces cerevisiae} SCOP: d.177.1.1
Probab=99.98 E-value=1.9e-33 Score=208.95 Aligned_cols=103 Identities=32% Similarity=0.480 Sum_probs=97.6
Q ss_pred CchhhhhhHHHhCCCCCcCcccCCCCcccCCcccCCCCCCC-----CCeeEEEEECCEEEeecccCccCCCHHHHHHHHH
Q psy9188 1 MLFLFLQKHAREHGLPWTVGKSFDTACPVSDFIPEHEIKDP-----DDVPLWLKVNGELRQKSTTGDMLFKTGDLISYIS 75 (104)
Q Consensus 1 ~TaRd~q~~~~~~~~~~~~~K~~d~~~p~Gp~i~~~~~~~~-----~~l~i~~~vNG~~~q~~~t~~m~~~~~~lia~~s 75 (104)
+|+||+|.++++.+.+|.++|+||+|||+||||+.+++.++ .+++++++|||+++|++++++|+|++++||+|+|
T Consensus 122 vt~Rd~q~~~~~~~~~~~~aK~~d~~~p~Gp~V~~~~~~d~~~dl~~~l~l~l~vNGe~~q~g~t~~m~~~~~~Lia~lS 201 (259)
T 1nkq_A 122 LTARNVQDEAKKKGLPWTISKGFDTFMPISAIVSREKFSSYKSNLQDIFRVKCSVNGQLRQDGGTNLMLHPLHKILQHIS 201 (259)
T ss_dssp CEEHHHHHHHHHHTCCSHHHHHSTTCEEBCCCEEGGGGGGGTTCCTTTEEEEEEETTEEEEEEEGGGBSSCHHHHHHHHH
T ss_pred eeHHHhhhhhhhcCCCcceeeccCcCCCcceEEECccccCcccccccceEEEEEECCEEEEEEcHHHcCCCHHHHHHHHh
Confidence 68999999887789999999999999999999977777777 8999999999999999999999999999999999
Q ss_pred cCCccCCCcEEEcCCCCCcccccCCCcc
Q psy9188 76 QHMTLEPYDLILTGKAGFILMFQQSPHS 103 (104)
Q Consensus 76 ~~~tL~pGDvi~tGTp~g~~~~~~g~~~ 103 (104)
++++|+|||||+||||+|++++++||++
T Consensus 202 ~~~tL~pGDvI~TGTp~Gvg~l~~GD~v 229 (259)
T 1nkq_A 202 TMISLEPGDIILTGTPAGVGELKPGDRV 229 (259)
T ss_dssp TTSCBCTTCEEECCCCSCCEEECTTCEE
T ss_pred CCCCcCCCCEEEeCCCCCcEecCCCCEE
Confidence 9999999999999999999999999975
No 8
>1wzo_A HPCE; structural genomics, riken structural genomics/proteom initiative, RSGI, NPPSFA, isomerase; 1.90A {Thermus thermophilus}
Probab=99.98 E-value=2.7e-33 Score=206.18 Aligned_cols=100 Identities=35% Similarity=0.482 Sum_probs=92.2
Q ss_pred CchhhhhhHHHhCCCCCcCcccCCCCcccCCcccCCCCCCCCCeeEEEEECCEEEeecccCccCCCHHHHHHHHHcCCcc
Q psy9188 1 MLFLFLQKHAREHGLPWTVGKSFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQHMTL 80 (104)
Q Consensus 1 ~TaRd~q~~~~~~~~~~~~~K~~d~~~p~Gp~i~~~~~~~~~~l~i~~~vNG~~~q~~~t~~m~~~~~~lia~~s~~~tL 80 (104)
+|+||+|... ..+|.++|+||+|||+|||+..+++.|+.+++++++|||+++|++++++|+|+++++|+|+|++++|
T Consensus 129 ~s~rd~q~~~---~~~~~~~K~~d~~~~lGp~i~~~~i~d~~~l~i~~~vNGe~~q~g~t~~mi~~~~~lia~ls~~~tL 205 (246)
T 1wzo_A 129 LVARDYVTNT---FRPPIRAKGRDTFLPLGPFLVVEEVEDPQDLWLRAYVNGELRQEGHTSRMLYSVAELLEFISEFMTL 205 (246)
T ss_dssp CEEGGGC-------CCCHHHHCSTTCEEEEEEEECSCCSCTTSCEEEEEETTEEEEEEEGGGBSSCHHHHHHHHHTTSCB
T ss_pred CchHHhcccc---cCCceeeccCCCCEEECCcCcHHHcCCCcccEEEEEECCEEEEeeCHHHhCCCHHHHHHHHhCCCCc
Confidence 5899999753 2789999999999999999777888889999999999999999999999999999999999999999
Q ss_pred CCCcEEEcCCCCCcccccCCCcc
Q psy9188 81 EPYDLILTGKAGFILMFQQSPHS 103 (104)
Q Consensus 81 ~pGDvi~tGTp~g~~~~~~g~~~ 103 (104)
+|||||+||||+|++++++||++
T Consensus 206 ~pGDvI~TGTp~gvg~l~~GD~v 228 (246)
T 1wzo_A 206 EPYDVLLTGTPKGISQVRPGDVM 228 (246)
T ss_dssp CTTCEEECCCCCCSCEECTTCEE
T ss_pred CCCCEEEeCCCCCceECCCCCEE
Confidence 99999999999999999999974
No 9
>2dfu_A Probable 2-hydroxyhepta-2,4-diene-1,7-dioate ISOM; 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase, structural GE NPPSFA; 2.20A {Thermus thermophilus}
Probab=99.97 E-value=1.3e-32 Score=204.76 Aligned_cols=97 Identities=33% Similarity=0.539 Sum_probs=91.3
Q ss_pred CchhhhhhHHHhCCCCCcCcccCCCCcccCCcccCCCCCCCCCeeEEEEECCEEEeecccCccCCCHHHHHHHHHcCCcc
Q psy9188 1 MLFLFLQKHAREHGLPWTVGKSFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQHMTL 80 (104)
Q Consensus 1 ~TaRd~q~~~~~~~~~~~~~K~~d~~~p~Gp~i~~~~~~~~~~l~i~~~vNG~~~q~~~t~~m~~~~~~lia~~s~~~tL 80 (104)
+|+||+|.+ ..+|.++|+||+|||+|||+.. ++ |+.+++++++|||+++|++++++|+|+++++|+|+|++++|
T Consensus 146 vt~Rd~q~~----~~~~~~aK~~d~~~plGp~i~~-~~-d~~~l~i~~~vNGe~~q~g~t~~mi~~~~~lia~ls~~~tL 219 (264)
T 2dfu_A 146 ITARDVQKK----DLQWVRAKSADKFLPLGPWLET-DL-NPQDTWVRTYVNGTLRQEGHTSQMIFSVAEILSYISTFMTL 219 (264)
T ss_dssp CEEHHHHHH----SSSSHHHHCSTTCEEEEEEEES-SC-CTTSCEEEEEETTEEEEEEEGGGBSSCHHHHHHHHHTTSCB
T ss_pred eEhhhhhhc----cCCCceeecCCCCEEECCcCcc-cc-CCCccEEEEEECCEEEEEecHHHhhcCHHHHHHHHhcCCCc
Confidence 589999975 5799999999999999999844 56 89999999999999999999999999999999999999999
Q ss_pred CCCcEEEcCCCCCcccccCCCcc
Q psy9188 81 EPYDLILTGKAGFILMFQQSPHS 103 (104)
Q Consensus 81 ~pGDvi~tGTp~g~~~~~~g~~~ 103 (104)
+|||||+||||+|++++++||+.
T Consensus 220 ~pGDvI~TGTp~Gvg~l~~GD~v 242 (264)
T 2dfu_A 220 EPLDVVLTGTPEGVGALRPGDRL 242 (264)
T ss_dssp CTTCEEECCCCSCCCBCCTTCEE
T ss_pred CCCCEEEeCCCCCccccCCCCEE
Confidence 99999999999999999999975
No 10
>3lzk_A Fumarylacetoacetate hydrolase family protein; structural genomics, PSI-2, protein structure initiative; 1.90A {Sinorhizobium meliloti}
Probab=99.97 E-value=5.4e-32 Score=208.93 Aligned_cols=91 Identities=20% Similarity=0.211 Sum_probs=86.0
Q ss_pred CchhhhhhHHHhCCCCCcCcccCCCCcccCCcc-cCCCCCCC-----CCeeEEEEECCEEEeecc-cCccCCCHHHHHHH
Q psy9188 1 MLFLFLQKHAREHGLPWTVGKSFDTACPVSDFI-PEHEIKDP-----DDVPLWLKVNGELRQKST-TGDMLFKTGDLISY 73 (104)
Q Consensus 1 ~TaRd~q~~~~~~~~~~~~~K~~d~~~p~Gp~i-~~~~~~~~-----~~l~i~~~vNG~~~q~~~-t~~m~~~~~~lia~ 73 (104)
||+||+|.+++.++.+|+++|+ |+++|||| |+|+++++ .+++|+++|||+++|+++ +++|+|++++||+|
T Consensus 192 ~SaRD~Q~~~~~~g~~~~~~K~---~~~~gP~iVt~del~~~~~~~~~~L~l~~~vNGe~~q~~~~t~~Mif~~~~lIa~ 268 (359)
T 3lzk_A 192 VSLRGLIPGELAKGFGFYQSKP---SSAFSPVAVTPEELGEAWDGGKLHLPLHVDLNGEPFGRANAGIDMTFDFPQLIVH 268 (359)
T ss_dssp CEETTTHHHHHHHTSCCSTTSC---CCEECSCEECHHHHGGGBCSSCBCSBEEEEETTEEEECCBTTSSCSSCHHHHHHH
T ss_pred ccHHHhhhhhhccCCCcccccc---ccccCCccccHHHcCccccCCccceEEEEEECCEEEEcCcCcccccCCHHHHHHH
Confidence 7999999999888999999998 58999996 88888765 689999999999999999 99999999999999
Q ss_pred HHcCCccCCCcEEEcCCCCCc
Q psy9188 74 ISQHMTLEPYDLILTGKAGFI 94 (104)
Q Consensus 74 ~s~~~tL~pGDvi~tGTp~g~ 94 (104)
+|+++||+|||||+||||+|+
T Consensus 269 lS~~~tL~pGDvI~TGTpsGv 289 (359)
T 3lzk_A 269 AARTRPLSAGTIIGSGTVSNK 289 (359)
T ss_dssp HTTTSCBCTTEEEECCSCCCC
T ss_pred HhCCCCcCCCCEEEcCCcCCC
Confidence 999999999999999999998
No 11
>2q18_X 2-keto-3-deoxy-D-arabinonate dehydratase; FAH-family fold, lyase; 2.10A {Sulfolobus solfataricus} PDB: 2q19_X 2q1a_X 2q1c_X 2q1d_X 3bqb_A
Probab=99.97 E-value=6.3e-32 Score=203.31 Aligned_cols=100 Identities=20% Similarity=0.255 Sum_probs=92.4
Q ss_pred CchhhhhhHHHhCCCCCcCcccCCCCcccCCcc-cCCCCCCCCCeeEEEEE--CCEEEeec--ccCccCCCHHHHHHHHH
Q psy9188 1 MLFLFLQKHAREHGLPWTVGKSFDTACPVSDFI-PEHEIKDPDDVPLWLKV--NGELRQKS--TTGDMLFKTGDLISYIS 75 (104)
Q Consensus 1 ~TaRd~q~~~~~~~~~~~~~K~~d~~~p~Gp~i-~~~~~~~~~~l~i~~~v--NG~~~q~~--~t~~m~~~~~~lia~~s 75 (104)
+|+||+|.+ .+.+|.++|+||+|||+|||+ +++++.|+.+++|+++| ||+++|++ ++++|+|++++||+|+|
T Consensus 165 vs~Rd~q~~---~~~~~~~aK~~d~~~plGP~ivt~dei~d~~~l~i~l~v~~NGe~~q~g~~~t~~mi~~~~~li~~ls 241 (293)
T 2q18_X 165 VSARDLEAE---NPLYLPQSKIYAGCCAFGPVIVTSDEIKNPYSLDITLKIVREGRVFFEGSVNTNKMRRKIEEQIQYLI 241 (293)
T ss_dssp CEEHHHHHH---CGGGHHHHHCSTTCEEEEEEEECGGGCSCTTSCEEEEEEEETTEEEEEEEEEGGGBCSCHHHHHHHHH
T ss_pred eEeehhhhh---cccCccccccCCCCEEECCcEeCHHHcCCcceeEEEEEEEECCEEEEECCCCHHHhccCHHHHHHHHH
Confidence 689999985 455678999999999999997 78888899999999988 99999998 69999999999999999
Q ss_pred cCCccCCCcEEEcCC---CCCcccccCCCcc
Q psy9188 76 QHMTLEPYDLILTGK---AGFILMFQQSPHS 103 (104)
Q Consensus 76 ~~~tL~pGDvi~tGT---p~g~~~~~~g~~~ 103 (104)
++++|+|||||+||| |.++.++++||+.
T Consensus 242 ~~~tL~pGDvI~TGTg~~p~~~~~l~~GD~v 272 (293)
T 2q18_X 242 RDNPIPDGTILTTGTAIVPGRDKGLKDEDIV 272 (293)
T ss_dssp TTCCCCTTEEEECCCSCCCCTTCCCCTTCEE
T ss_pred cCCCCCCCCEEECCCCCCCCCCcccCCCCEE
Confidence 999999999999999 9999999999974
No 12
>1gtt_A 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; lyase, bifunctional enzyme, multifunctional enzyme decarboxylase; 1.7A {Escherichia coli} SCOP: d.177.1.1 d.177.1.1 PDB: 1i7o_A
Probab=99.97 E-value=1.7e-31 Score=209.68 Aligned_cols=99 Identities=35% Similarity=0.419 Sum_probs=93.8
Q ss_pred Cchhh-hhhHHHhCCCCCcCcccCCCCcccCCcc-cCCCCCCCCCeeEEEEECCEEEeecccCccCCCHHHHHHHHHcCC
Q psy9188 1 MLFLF-LQKHAREHGLPWTVGKSFDTACPVSDFI-PEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQHM 78 (104)
Q Consensus 1 ~TaRd-~q~~~~~~~~~~~~~K~~d~~~p~Gp~i-~~~~~~~~~~l~i~~~vNG~~~q~~~t~~m~~~~~~lia~~s~~~ 78 (104)
+|+|| +|. ...||.++|+||+|||+|||+ +.++++|+.+++++++|||+++|++++++|+|+++++|+|+|+++
T Consensus 308 ~t~Rd~lq~----~~~~w~~~K~~d~~~~lGp~iv~~~~~~d~~~l~i~l~vNGe~~q~g~~~~mi~~~~~lia~ls~~~ 383 (429)
T 1gtt_A 308 YAIRDYLEN----YYRPNLRVKSRDGLTPMLSTIVPKEAIPDPHNLTLRTFVNGELRQQGTTADLIFSVPFLIAYLSEFM 383 (429)
T ss_dssp CEEGGGCCS----SSSSCHHHHSCTTCEEBCSCCEEGGGCSCTTSCEEEEEETTEEEEEEEGGGBSSCHHHHHHHHHTTS
T ss_pred cccchhhhh----hcCCccccccCCCCEEECCcccCHHHcCCCccceEEEEECCEEEEEeCHHHcCCCHHHHHHHHhCCC
Confidence 58999 586 468999999999999999996 888998999999999999999999999999999999999999999
Q ss_pred ccCCCcEEEcCCCCCcccccCCCcc
Q psy9188 79 TLEPYDLILTGKAGFILMFQQSPHS 103 (104)
Q Consensus 79 tL~pGDvi~tGTp~g~~~~~~g~~~ 103 (104)
+|+|||||+||||+|++++++||+.
T Consensus 384 tL~~GDvI~TGTp~gvg~l~~GD~v 408 (429)
T 1gtt_A 384 TLNPGDMIATGTPKGLSDVVPGDEV 408 (429)
T ss_dssp CBCTTCEEECCCCSCCCBCCTTCEE
T ss_pred CcCCCCEEEcCCCCCCeECCCCCEE
Confidence 9999999999999999999999975
No 13
>1gtt_A 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; lyase, bifunctional enzyme, multifunctional enzyme decarboxylase; 1.7A {Escherichia coli} SCOP: d.177.1.1 d.177.1.1 PDB: 1i7o_A
Probab=99.96 E-value=5.8e-30 Score=200.91 Aligned_cols=95 Identities=22% Similarity=0.303 Sum_probs=89.2
Q ss_pred CchhhhhhHHHhCCCCCcCcccCCCCcccCCcccCCCCCCCCCeeEEEEECCEEEeecccCccCCCHHHHHHHHHcCCcc
Q psy9188 1 MLFLFLQKHAREHGLPWTVGKSFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQHMTL 80 (104)
Q Consensus 1 ~TaRd~q~~~~~~~~~~~~~K~~d~~~p~Gp~i~~~~~~~~~~l~i~~~vNG~~~q~~~t~~m~~~~~~lia~~s~~~tL 80 (104)
+|+||+| .+.||.++|+||+|||+||| +++.|+.+++|+++|||+++|++++++|+|+++++|+|+|++++|
T Consensus 95 ~s~Rd~~-----~~~~~~~aK~fd~~~~lGp~---~~~~d~~~l~i~~~vNGe~~q~g~t~~mi~~~~~li~~ls~~~tL 166 (429)
T 1gtt_A 95 VSLPEES-----FYRPAIKAKCRDGFCPIGET---VALSNVDNLTIYTEINGRPADHWNTADLQRNAAQLLSALSEFATL 166 (429)
T ss_dssp CBSCCCC-----SSSCCHHHHCSTTCEEBCCC---BCCSCCTTCEEEEEETTEEEEEEEGGGBSSCHHHHHHHHHTTSCB
T ss_pred eeehhhh-----ccCCccccCCCCCCEEECCh---hhcCCccccEEEEEECCEEEEeCCHHHhcCCHHHHHHHHhcCCCc
Confidence 5889866 35789999999999999999 667789999999999999999999999999999999999999999
Q ss_pred CCCcEEEcCCCCCcccccCCCcc
Q psy9188 81 EPYDLILTGKAGFILMFQQSPHS 103 (104)
Q Consensus 81 ~pGDvi~tGTp~g~~~~~~g~~~ 103 (104)
+|||||+||||+|++++++||+.
T Consensus 167 ~~GDvI~TGTp~g~~~l~~GD~v 189 (429)
T 1gtt_A 167 NPGDAILLGTPQARVEIQPGDRV 189 (429)
T ss_dssp CTTCEEECCCCSCCCEECTTCEE
T ss_pred CCCCEEEEeccCcceecCCCCEE
Confidence 99999999999999999999974
No 14
>1hyo_A Fumarylacetoacetate hydrolase; beta-sandwich roll; HET: HBU; 1.30A {Mus musculus} SCOP: b.34.8.1 d.177.1.1 PDB: 1qcn_A 2hzy_A* 1qco_A 1qqj_A
Probab=99.93 E-value=3.4e-27 Score=185.26 Aligned_cols=98 Identities=20% Similarity=0.178 Sum_probs=84.6
Q ss_pred CchhhhhhHHHhCCCCCcCcccCCCCcccCCcc-cCCCCC--------------------CCC--CeeEEEEEC------
Q psy9188 1 MLFLFLQKHAREHGLPWTVGKSFDTACPVSDFI-PEHEIK--------------------DPD--DVPLWLKVN------ 51 (104)
Q Consensus 1 ~TaRd~q~~~~~~~~~~~~~K~~d~~~p~Gp~i-~~~~~~--------------------~~~--~l~i~~~vN------ 51 (104)
||+||+|.+++. +++|+++|+||++ +|||| ++++++ ++. +++++++||
T Consensus 236 ~SaRdiQ~~e~~-plg~~~aK~f~t~--iGPwivt~d~l~p~~~~~~~~~~~~l~~l~~~~~~~~~l~l~~~vN~~~~~~ 312 (421)
T 1hyo_A 236 WSARDIQQWEYV-PLGPFLGKSFGTT--ISPWVVPMDALMPFVVPNPKQDPKPLPYLCHSQPYTFDINLSVSLKGEGMSQ 312 (421)
T ss_dssp CEEHHHHHHHCT-TTCCCHHHHTCEE--ECSCBEEHHHHGGGEECCCCCSSCCCGGGCCCSCCEECCEEEEEEECTTCSS
T ss_pred ccHHhhhhhhcc-cCCCccccCcCCC--CCCeecchhhcccccccccccCCcccccccccCCCccceEEEEEEecCCCCC
Confidence 799999998765 6778999999996 99997 666653 233 688999999
Q ss_pred CEEEeecccCccCCCHHHHHHHHH-cCCccCCCcEEEcCCCCCcccccCCC
Q psy9188 52 GELRQKSTTGDMLFKTGDLISYIS-QHMTLEPYDLILTGKAGFILMFQQSP 101 (104)
Q Consensus 52 G~~~q~~~t~~m~~~~~~lia~~s-~~~tL~pGDvi~tGTp~g~~~~~~g~ 101 (104)
|+++|++++++|+|+++++|+|+| ++++|+|||||+||||+|+++.+.|+
T Consensus 313 Ge~~q~~~~~~m~~~~~~lIa~lss~g~tL~pGDlI~TGTpsG~~~~~~G~ 363 (421)
T 1hyo_A 313 AATICRSNFKHMYWTMLQQLTHHSVNGCNLRPGDLLASGTISGSDPESFGS 363 (421)
T ss_dssp CEEEEEEETTCCSSCHHHHHHHHHTTSCCCCTTCEEECCCCCCSSGGGCCB
T ss_pred CEEEEecCHHhhcCCHHHHHHHHHHCCCccCCCCEEEcCCCCCCCCCCCcc
Confidence 999999999999999999999995 89999999999999999998654443
No 15
>2wqt_A 2-keto-4-pentenoate hydratase; lyase, dodecahedral form, aromatic hydrocarbons catabolism; 2.80A {Escherichia coli} PDB: 1sv6_A
Probab=99.91 E-value=1.4e-25 Score=166.96 Aligned_cols=84 Identities=15% Similarity=0.148 Sum_probs=79.7
Q ss_pred CcccCCCCc--------ccCCcc-cCCCCCCCCCeeEEEEECCEEEeecccCccCCCHHHHHHHHHc-----CCccCCCc
Q psy9188 19 VGKSFDTAC--------PVSDFI-PEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQ-----HMTLEPYD 84 (104)
Q Consensus 19 ~~K~~d~~~--------p~Gp~i-~~~~~~~~~~l~i~~~vNG~~~q~~~t~~m~~~~~~lia~~s~-----~~tL~pGD 84 (104)
++|+||++| ++|||+ +++++ |+.++.++++|||+++|++++++|+|+|.++|+|+|+ +++|+|||
T Consensus 149 ~~k~~d~~aDn~s~~~~~lGp~~v~~~~~-d~~~l~i~l~vNGe~~q~g~~~~ml~~p~~~v~~ls~~l~~~g~tL~~Gd 227 (270)
T 2wqt_A 149 SIQFVDTVADNASCGVYVIGGPAQRPAGL-DLKNCAMKMTRNNEEVSSGRGSECLGHPLNAAVWLARKMASLGEPLRTGD 227 (270)
T ss_dssp CCCHHHHHHTGGGCCEEEECBCCBCSTTC-CCSSCEEEEEETTEEEEEEEGGGTTTSHHHHHHHHHHHHHHTTCCBCTTC
T ss_pred CCChhcEEccCccCCCEeECcCcCCcccC-ChhhCeEEEEECCEEEEEEchhhccCCHHHHHHHHHHHHHhcCCCcCCCC
Confidence 389999998 999997 78887 8999999999999999999999999999999999998 79999999
Q ss_pred EEEcCCCCCcccccCCCcc
Q psy9188 85 LILTGKAGFILMFQQSPHS 103 (104)
Q Consensus 85 vi~tGTp~g~~~~~~g~~~ 103 (104)
||+||||.++.++++||++
T Consensus 228 vI~TGT~~g~~~l~~GD~v 246 (270)
T 2wqt_A 228 IILTGALGPMVAVNAGDRF 246 (270)
T ss_dssp EEEEEESSCCEECCTTCEE
T ss_pred EEEcCCCCCCeeCCCCCEE
Confidence 9999999999999999975
No 16
>2eb4_A 2-OXO-HEPT-3-ENE-1,7-dioate hydratase; lyase; 1.60A {Escherichia coli} PDB: 2eb5_A 2eb6_A
Probab=99.91 E-value=1.9e-26 Score=171.36 Aligned_cols=87 Identities=13% Similarity=0.148 Sum_probs=79.3
Q ss_pred CCcCcc-cCCCCcccCCcc-cCCCCCCCCCeeEEEEECCEEEeecccCccCCCHHHHHHHHHcCC-----ccCCCcEEEc
Q psy9188 16 PWTVGK-SFDTACPVSDFI-PEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQHM-----TLEPYDLILT 88 (104)
Q Consensus 16 ~~~~~K-~~d~~~p~Gp~i-~~~~~~~~~~l~i~~~vNG~~~q~~~t~~m~~~~~~lia~~s~~~-----tL~pGDvi~t 88 (104)
+|..+| +|++++|+|||+ +++++ |+.++.++++|||+++|++++++|+|+|.++|+|+|+++ +|+|||||+|
T Consensus 159 ~~~~Ad~~~~~~~~lGp~~v~~~~~-d~~~l~~~l~vNGe~~q~g~t~~ml~~p~~~i~~ls~~l~~~g~tL~~GDvI~T 237 (267)
T 2eb4_A 159 FDTISDNAANAGVILGGRPIKPDEL-DLRWISALMYRNGVIEETGVAAGVLNHPANGVAWLANKLAPYDVQLEAGQIILG 237 (267)
T ss_dssp HHHHHTGGGEEEEEECSCCBCTTSS-CGGGCEEEEEETTEEEEEEEGGGTTTSTTHHHHHHHHHHGGGTCCBCTTCEEEC
T ss_pred cceeecccccccEEECCCcCCcccC-ChhhCeEEEEECCEEEEEecHHhcccCHHHHHHHHHHHHHHcCCCCCCCCEEEC
Confidence 455555 788999999986 77887 899999999999999999999999999999999999865 9999999999
Q ss_pred CCCCCcccccCCCcc
Q psy9188 89 GKAGFILMFQQSPHS 103 (104)
Q Consensus 89 GTp~g~~~~~~g~~~ 103 (104)
|||.++.++++||++
T Consensus 238 GT~~g~~~l~~GD~v 252 (267)
T 2eb4_A 238 GSFTRPVPARKGDTF 252 (267)
T ss_dssp CCSSCCEECCTTCEE
T ss_pred CCCCCCEECCCCCEE
Confidence 999999999999975
No 17
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=82.18 E-value=2.1 Score=25.11 Aligned_cols=45 Identities=16% Similarity=0.129 Sum_probs=30.4
Q ss_pred EEEEECCEEEeecccCccCCCHHHHHHHHH--------------------cCCccCCCcEEEcCCCCCcc
Q psy9188 46 LWLKVNGELRQKSTTGDMLFKTGDLISYIS--------------------QHMTLEPYDLILTGKAGFIL 95 (104)
Q Consensus 46 i~~~vNG~~~q~~~t~~m~~~~~~lia~~s--------------------~~~tL~pGDvi~tGTp~g~~ 95 (104)
|.+.|||+.++- .. -++.+|++.+. ....|..||.|--=+|.+.|
T Consensus 1 M~I~vNG~~~e~-~~----~Tl~~LL~~l~~~~~~vAV~vNg~iVpr~~~~~~~L~dGD~veIv~~VgGG 65 (73)
T 2kl0_A 1 MLVTINGEQREV-QS----ASVAALMTELDCTGGHFAVALNYDVVPRGKWDETPVTAGDEIEILTPRQGG 65 (73)
T ss_dssp CCEEETTEEECC-CC----SBHHHHHHHTTCCSSSCEEEESSSEECHHHHTTCBCCTTCEEEEECCCCCC
T ss_pred CEEEECCEEEEc-CC----CcHHHHHHHcCCCCCcEEEEECCEECChHHcCcccCCCCCEEEEEccccCC
Confidence 356788887764 21 37788888764 13578889988777766544
No 18
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=77.76 E-value=2.2 Score=24.12 Aligned_cols=25 Identities=12% Similarity=0.118 Sum_probs=16.2
Q ss_pred EEEECCEEEeecccCccCCCHHHHHHHHH
Q psy9188 47 WLKVNGELRQKSTTGDMLFKTGDLISYIS 75 (104)
Q Consensus 47 ~~~vNG~~~q~~~t~~m~~~~~~lia~~s 75 (104)
.+.|||+.++-... -++.++++++.
T Consensus 2 ~i~vNg~~~~~~~~----~tv~~ll~~l~ 26 (66)
T 1f0z_A 2 QILFNDQAMQCAAG----QTVHELLEQLD 26 (66)
T ss_dssp CEEESSCEECCCTT----CCHHHHHHHHT
T ss_pred EEEECCEEEEcCCC----CcHHHHHHHcC
Confidence 46788887763221 26778888774
No 19
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=74.55 E-value=3.5 Score=25.15 Aligned_cols=30 Identities=17% Similarity=0.072 Sum_probs=18.3
Q ss_pred CeeEEEEECCEEEeecccCccCCCHHHHHHHHH
Q psy9188 43 DVPLWLKVNGELRQKSTTGDMLFKTGDLISYIS 75 (104)
Q Consensus 43 ~l~i~~~vNG~~~q~~~t~~m~~~~~~lia~~s 75 (104)
...|.+.|||+.++-... .-++.+|++.+.
T Consensus 18 ~~~M~I~vNGe~~el~~~---~~Tv~dLL~~L~ 47 (87)
T 1tyg_B 18 GGRHMLQLNGKDVKWKKD---TGTIQDLLASYQ 47 (87)
T ss_dssp ----CEEETTEEECCSSS---CCBHHHHHHHTT
T ss_pred CcceEEEECCEEEECCCC---CCcHHHHHHHhC
Confidence 345788999998874322 127888888874
No 20
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=72.47 E-value=9.2 Score=21.32 Aligned_cols=23 Identities=17% Similarity=0.238 Sum_probs=15.9
Q ss_pred EEECCEEEeecccCccCCCHHHHHHHHH
Q psy9188 48 LKVNGELRQKSTTGDMLFKTGDLISYIS 75 (104)
Q Consensus 48 ~~vNG~~~q~~~t~~m~~~~~~lia~~s 75 (104)
+.|||+.++- . . -++.++++++.
T Consensus 2 i~vNg~~~~~-~--~--~tv~~ll~~l~ 24 (64)
T 2cu3_A 2 VWLNGEPRPL-E--G--KTLKEVLEEMG 24 (64)
T ss_dssp EEETTEEECC-T--T--CCHHHHHHHHT
T ss_pred EEECCEEEEc-C--C--CcHHHHHHHcC
Confidence 5788888764 2 1 27888888875
No 21
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=67.85 E-value=3.3 Score=23.76 Aligned_cols=27 Identities=7% Similarity=0.073 Sum_probs=15.7
Q ss_pred eEEEEECCEE----EeecccCccCCCHHHHHHHHH
Q psy9188 45 PLWLKVNGEL----RQKSTTGDMLFKTGDLISYIS 75 (104)
Q Consensus 45 ~i~~~vNG~~----~q~~~t~~m~~~~~~lia~~s 75 (104)
.|+++|||+. ++-.. . -++.++++++.
T Consensus 4 ~m~i~vNg~~~~~~~~~~~--~--~tv~~Ll~~l~ 34 (70)
T 1ryj_A 4 GMKFTVITDDGKKILESGA--P--RRIKDVLGELE 34 (70)
T ss_dssp CEEEEEEETTEEEEEEESS--C--CBHHHHHHHTT
T ss_pred eEEEEEeCccCceeEECCC--C--CcHHHHHHHhC
Confidence 3677778776 43211 1 26777777763
No 22
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=64.95 E-value=13 Score=21.87 Aligned_cols=48 Identities=17% Similarity=0.009 Sum_probs=29.0
Q ss_pred EEEEECCEEEeecccCccCCCHHHHHHHHHc---------------------CCccCCCcEEEcCCCCCcc
Q psy9188 46 LWLKVNGELRQKSTTGDMLFKTGDLISYISQ---------------------HMTLEPYDLILTGKAGFIL 95 (104)
Q Consensus 46 i~~~vNG~~~q~~~t~~m~~~~~~lia~~s~---------------------~~tL~pGDvi~tGTp~g~~ 95 (104)
|.+.|||+.++-..-.. -++.+|++.+.- ...|..||.|--=++.+.|
T Consensus 1 M~I~vNGe~~e~~~~~~--~Tl~~LL~~l~~~~~~~vAVavNg~iVpr~~~~~~~L~dGD~IEIv~~VgGG 69 (78)
T 2k5p_A 1 MNLTVNGKPSTVDGAES--LNVTELLSALKVAQAEYVTVELNGEVLEREAFDATTVKDGDAVEFLYFMGGG 69 (78)
T ss_dssp CEEEETTEEEECSSCSC--EEHHHHHHHHTCSCTTTCCEEETTEECCTTHHHHCEECSSBCEEECCCCCCS
T ss_pred CEEEECCEEEEcCCCCC--CcHHHHHHHcCCCCCCcEEEEECCEECChHHcCcccCCCCCEEEEEeeecCC
Confidence 46788998776430011 367777777631 1457777777666665544
No 23
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2
Probab=60.02 E-value=5.3 Score=26.20 Aligned_cols=19 Identities=11% Similarity=-0.076 Sum_probs=15.3
Q ss_pred cCCccCCCcEEEcCCCCCc
Q psy9188 76 QHMTLEPYDLILTGKAGFI 94 (104)
Q Consensus 76 ~~~tL~pGDvi~tGTp~g~ 94 (104)
+...|.+||+|..|.+...
T Consensus 116 ~~~~L~~GD~I~lG~~~~~ 134 (149)
T 1gxc_A 116 KRRPLNNNSEIALSLSRNK 134 (149)
T ss_dssp CEEECCTTEEEEESSTTCE
T ss_pred CeEECCCCCEEEECCCCCe
Confidence 3578999999999987543
No 24
>1mg4_A Doublecortin, doublecortin-like kinase (N-terminal domain); DCX domain, microtubule bundling, cortex development, transferase; 1.50A {Homo sapiens} SCOP: d.15.11.1 PDB: 1mfw_A 1mjd_A 2bqq_A 2xrp_I*
Probab=57.58 E-value=6.9 Score=25.02 Aligned_cols=64 Identities=11% Similarity=0.039 Sum_probs=44.2
Q ss_pred CCCCeeEEEEECCEEEeeccc----CccCCCHHHHHHHHHc----CCccCCCcEEEcCCCCC------cccccCCCccC
Q psy9188 40 DPDDVPLWLKVNGELRQKSTT----GDMLFKTGDLISYISQ----HMTLEPYDLILTGKAGF------ILMFQQSPHSV 104 (104)
Q Consensus 40 ~~~~l~i~~~vNG~~~q~~~t----~~m~~~~~~lia~~s~----~~tL~pGDvi~tGTp~g------~~~~~~g~~~~ 104 (104)
.+....|.++.||.....|-. ..-+.+++.++..+++ ...|.-| |=---||.| ...++.|+.||
T Consensus 12 ~~kak~I~~yrNGD~~~~G~~~~v~~~~~~tfd~LL~~lT~~Ls~~v~lp~G-VR~lyt~~G~~~I~sl~dL~dG~~YV 89 (113)
T 1mg4_A 12 EKKAKKVRFYRNGDRYFKGIVYAISPDRFRSFEALLADLTRTLSDNVNLPQG-VRTIYTIDGLKKISSLDQLVEGESYV 89 (113)
T ss_dssp -CCSEEEEEEETTCSSCCCEEEEECTTTCSSHHHHHHHHHHHHCCSSSSTTC-CCEEEETTSSCBCCSGGGCCTTCEEE
T ss_pred CCCceEEEEEECCCCCCCCEEEEECccccCCHHHHHHHHHHHHhhcCCCCcc-eeEEEcCCCCeEcCCHHHhhCCCEEE
Confidence 457789999999987766542 3457899999999865 4588888 733334554 34566676664
No 25
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=50.65 E-value=10 Score=25.99 Aligned_cols=15 Identities=27% Similarity=0.344 Sum_probs=12.3
Q ss_pred cCCccCCCcEEEcCC
Q psy9188 76 QHMTLEPYDLILTGK 90 (104)
Q Consensus 76 ~~~tL~pGDvi~tGT 90 (104)
+...|..||.|..|.
T Consensus 151 ~~~~L~~GDrI~lG~ 165 (184)
T 4egx_A 151 EPSILRSGNRIIMGK 165 (184)
T ss_dssp SCEECCTTCEEEETT
T ss_pred ccEEcCCCCEEEECC
Confidence 355799999999985
No 26
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A
Probab=49.84 E-value=11 Score=24.91 Aligned_cols=15 Identities=27% Similarity=0.344 Sum_probs=12.2
Q ss_pred cCCccCCCcEEEcCC
Q psy9188 76 QHMTLEPYDLILTGK 90 (104)
Q Consensus 76 ~~~tL~pGDvi~tGT 90 (104)
+...|..||+|.-|.
T Consensus 121 ~~~~L~~GD~I~~G~ 135 (154)
T 4ejq_A 121 EPSILRSGNRIIMGK 135 (154)
T ss_dssp SCEECCTTCEEEETT
T ss_pred CceECCCCCEEEECC
Confidence 345799999999984
No 27
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A*
Probab=48.37 E-value=11 Score=24.17 Aligned_cols=14 Identities=36% Similarity=0.361 Sum_probs=11.7
Q ss_pred CCccCCCcEEEcCC
Q psy9188 77 HMTLEPYDLILTGK 90 (104)
Q Consensus 77 ~~tL~pGDvi~tGT 90 (104)
...|..||.|..|.
T Consensus 102 ~~~L~~GD~I~lG~ 115 (124)
T 3fm8_A 102 PIQLHHGDRILWGN 115 (124)
T ss_dssp CEEECTTCEEEETT
T ss_pred cEECCCCCEEEECC
Confidence 46799999999884
No 28
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2
Probab=46.38 E-value=14 Score=23.79 Aligned_cols=15 Identities=20% Similarity=0.208 Sum_probs=13.6
Q ss_pred CCccCCCcEEEcCCC
Q psy9188 77 HMTLEPYDLILTGKA 91 (104)
Q Consensus 77 ~~tL~pGDvi~tGTp 91 (104)
...|.+||+|..|.+
T Consensus 89 ~~~L~~GD~I~lG~~ 103 (138)
T 2pie_A 89 VYSIHQGDYIQLGVP 103 (138)
T ss_dssp CEECCTTCEEEESCC
T ss_pred cEECCCCCEEEECCC
Confidence 588999999999996
No 29
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP}
Probab=45.78 E-value=17 Score=23.26 Aligned_cols=15 Identities=20% Similarity=0.186 Sum_probs=12.9
Q ss_pred CccCCCcEEEcCCCC
Q psy9188 78 MTLEPYDLILTGKAG 92 (104)
Q Consensus 78 ~tL~pGDvi~tGTp~ 92 (104)
..|.+||+|-.|...
T Consensus 94 ~~L~~GD~I~iG~~~ 108 (131)
T 3hx1_A 94 HIIQTGDEIVMGPQV 108 (131)
T ss_dssp EECCTTCEEECSTTC
T ss_pred EECCCCCEEEECCEE
Confidence 789999999998753
No 30
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis}
Probab=42.52 E-value=9.5 Score=23.29 Aligned_cols=14 Identities=21% Similarity=0.368 Sum_probs=11.8
Q ss_pred CCccCCCcEEEcCC
Q psy9188 77 HMTLEPYDLILTGK 90 (104)
Q Consensus 77 ~~tL~pGDvi~tGT 90 (104)
...|.+||+|-.|.
T Consensus 81 ~~~L~~Gd~i~~G~ 94 (106)
T 3gqs_A 81 QSTLSANQVVALGT 94 (106)
T ss_dssp EEECCTTCCEEETT
T ss_pred CeECCCCCEEEECC
Confidence 35899999998886
No 31
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}
Probab=42.14 E-value=17 Score=23.24 Aligned_cols=15 Identities=7% Similarity=0.016 Sum_probs=12.3
Q ss_pred CCccCCCcEEEcCCC
Q psy9188 77 HMTLEPYDLILTGKA 91 (104)
Q Consensus 77 ~~tL~pGDvi~tGTp 91 (104)
...|++||+|--|.-
T Consensus 108 ~~~L~~GD~I~~G~s 122 (130)
T 4h87_A 108 YCRVHVGHVVRFGGS 122 (130)
T ss_dssp CEECCTTCEEEETTC
T ss_pred eeECCCCCEEEECCc
Confidence 467999999998853
No 32
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae}
Probab=41.72 E-value=12 Score=24.88 Aligned_cols=16 Identities=13% Similarity=0.131 Sum_probs=13.7
Q ss_pred CCccCCCcEEEcCCCC
Q psy9188 77 HMTLEPYDLILTGKAG 92 (104)
Q Consensus 77 ~~tL~pGDvi~tGTp~ 92 (104)
...|.+||+|-.|...
T Consensus 131 ~~~L~~GD~I~~G~s~ 146 (158)
T 3els_A 131 YIELRSGDVLTLSEFE 146 (158)
T ss_dssp CEECCTTEEEESSSCG
T ss_pred eEEcCCCCEEEECCCC
Confidence 5789999999999764
No 33
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A
Probab=39.21 E-value=17 Score=25.57 Aligned_cols=16 Identities=13% Similarity=0.131 Sum_probs=13.7
Q ss_pred CCccCCCcEEEcCCCC
Q psy9188 77 HMTLEPYDLILTGKAG 92 (104)
Q Consensus 77 ~~tL~pGDvi~tGTp~ 92 (104)
...|.+||+|-.|.+.
T Consensus 178 ~~~L~~GD~I~fG~s~ 193 (205)
T 3elv_A 178 YIELRSGDVLTLSEFE 193 (205)
T ss_dssp CEECCTTCEEESSSSG
T ss_pred eeECCCCCEEEECCCC
Confidence 3679999999999865
No 34
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A*
Probab=39.13 E-value=22 Score=23.58 Aligned_cols=15 Identities=27% Similarity=0.200 Sum_probs=13.2
Q ss_pred CCccCCCcEEEcCCC
Q psy9188 77 HMTLEPYDLILTGKA 91 (104)
Q Consensus 77 ~~tL~pGDvi~tGTp 91 (104)
...|.+||+|-.|..
T Consensus 121 ~~~L~~GD~I~iG~~ 135 (164)
T 1g3g_A 121 NQLLSQGDEITVGVG 135 (164)
T ss_dssp EEECCTTCEEEESCS
T ss_pred ceEcCCCCEEEECCC
Confidence 488999999999985
No 35
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2
Probab=39.00 E-value=11 Score=23.53 Aligned_cols=15 Identities=13% Similarity=0.064 Sum_probs=13.0
Q ss_pred cCCccCCCcEEEcCC
Q psy9188 76 QHMTLEPYDLILTGK 90 (104)
Q Consensus 76 ~~~tL~pGDvi~tGT 90 (104)
+...|++||+|..|.
T Consensus 91 ~~~~L~~GD~I~iG~ 105 (120)
T 1wln_A 91 ETTMLQSGMRLQFGT 105 (120)
T ss_dssp SCEEECTTCEEEETT
T ss_pred CCEECCCCCEEEECC
Confidence 456899999999997
No 36
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=38.39 E-value=18 Score=22.77 Aligned_cols=16 Identities=25% Similarity=0.119 Sum_probs=13.7
Q ss_pred CCccCCCcEEEcCCCC
Q psy9188 77 HMTLEPYDLILTGKAG 92 (104)
Q Consensus 77 ~~tL~pGDvi~tGTp~ 92 (104)
...|.+||+|-.|...
T Consensus 93 ~~~L~~Gd~I~lG~~~ 108 (127)
T 1g6g_A 93 NQLLSQGDEITVGVGV 108 (127)
T ss_dssp CEECCTTCEEEECTTS
T ss_pred eEEcCCCCEEEECCCc
Confidence 5889999999999864
No 37
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A
Probab=37.97 E-value=18 Score=21.70 Aligned_cols=15 Identities=27% Similarity=0.313 Sum_probs=12.5
Q ss_pred CCccCCCcEEEcCCC
Q psy9188 77 HMTLEPYDLILTGKA 91 (104)
Q Consensus 77 ~~tL~pGDvi~tGTp 91 (104)
...|.+||+|..|..
T Consensus 76 ~~~L~~gd~i~iG~~ 90 (100)
T 3po8_A 76 EWQLADGDVIRLGHS 90 (100)
T ss_dssp EEECCTTCEEEETTE
T ss_pred eEECCCCCEEEECCE
Confidence 468999999998863
No 38
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis}
Probab=35.11 E-value=20 Score=24.03 Aligned_cols=14 Identities=29% Similarity=0.309 Sum_probs=11.9
Q ss_pred CCccCCCcEEEcCC
Q psy9188 77 HMTLEPYDLILTGK 90 (104)
Q Consensus 77 ~~tL~pGDvi~tGT 90 (104)
...|.+||+|-.|.
T Consensus 138 ~~~L~~GD~I~lG~ 151 (157)
T 3oun_A 138 EWQLADGDVIRLGH 151 (157)
T ss_dssp EEECCTTCEEEETT
T ss_pred eEECCCCCEEEECC
Confidence 37899999998885
No 39
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2
Probab=32.06 E-value=16 Score=23.67 Aligned_cols=16 Identities=19% Similarity=0.104 Sum_probs=13.9
Q ss_pred CCccCCCcEEEcCCCC
Q psy9188 77 HMTLEPYDLILTGKAG 92 (104)
Q Consensus 77 ~~tL~pGDvi~tGTp~ 92 (104)
...|.+||+|-.|.+.
T Consensus 97 ~~~L~~GD~I~iG~~~ 112 (145)
T 2csw_A 97 VYSIHQGDYIQLGVPL 112 (145)
T ss_dssp CEECCSSCCEEESCCC
T ss_pred cEECCCCCEEEECCCC
Confidence 5889999999999963
No 40
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=30.82 E-value=11 Score=23.35 Aligned_cols=16 Identities=25% Similarity=0.252 Sum_probs=13.3
Q ss_pred CCccCCCcEEEcCCCC
Q psy9188 77 HMTLEPYDLILTGKAG 92 (104)
Q Consensus 77 ~~tL~pGDvi~tGTp~ 92 (104)
...|.+||+|..|...
T Consensus 90 ~~~L~~gd~i~lG~~~ 105 (118)
T 1uht_A 90 SVNLGDGDVIKLGEYT 105 (118)
T ss_dssp EEECCTTEEEEETTTE
T ss_pred eEEcCCCCEEEECCeE
Confidence 5789999999999753
No 41
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=30.81 E-value=28 Score=19.97 Aligned_cols=30 Identities=17% Similarity=0.062 Sum_probs=21.6
Q ss_pred eEEEEECCEEEeecccCccCCCHHHHHHHHHcCCccCCCcEEEcCCCCC
Q psy9188 45 PLWLKVNGELRQKSTTGDMLFKTGDLISYISQHMTLEPYDLILTGKAGF 93 (104)
Q Consensus 45 ~i~~~vNG~~~q~~~t~~m~~~~~~lia~~s~~~tL~pGDvi~tGTp~g 93 (104)
.+.+.|||+.+... ..|.+||.|.-=.|.+
T Consensus 46 ~v~VavNg~~v~~~-------------------~~L~dGD~V~i~ppv~ 75 (77)
T 1rws_A 46 SAIAKVNGKVVLED-------------------DEVKDGDFVEVIPVVS 75 (77)
T ss_dssp SSCEEETTEEECSS-------------------SCCCSSCCCBCSCCCC
T ss_pred CEEEEECCEECCCC-------------------CCcCCCCEEEEEcccc
Confidence 45788999988642 5788888887666543
No 42
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis}
Probab=28.86 E-value=33 Score=21.08 Aligned_cols=14 Identities=29% Similarity=0.259 Sum_probs=12.1
Q ss_pred CCccCCCcEEEcCC
Q psy9188 77 HMTLEPYDLILTGK 90 (104)
Q Consensus 77 ~~tL~pGDvi~tGT 90 (104)
...|.+||+|..|.
T Consensus 84 ~~~L~~gd~i~iG~ 97 (115)
T 2xt9_B 84 SAVLANGDEVQIGK 97 (115)
T ss_dssp EEEECTTCEEEETT
T ss_pred eEECCCCCEEEECC
Confidence 36899999999986
No 43
>4gjz_A Lysine-specific demethylase 8; JMJC, beta barrel, Fe(II) and 2-oxoglutarate binding, oxidor; HET: AKG BME; 1.05A {Homo sapiens} PDB: 4gjy_A* 4aap_A* 3uyj_A*
Probab=28.56 E-value=18 Score=24.18 Aligned_cols=12 Identities=17% Similarity=0.440 Sum_probs=10.1
Q ss_pred CCccCCCcEEEc
Q psy9188 77 HMTLEPYDLILT 88 (104)
Q Consensus 77 ~~tL~pGDvi~t 88 (104)
.++|+|||+|+-
T Consensus 202 ~~~l~pGD~Lyi 213 (235)
T 4gjz_A 202 SCILSPGEILFI 213 (235)
T ss_dssp EEEECTTCEEEE
T ss_pred EEEECCCCEEEe
Confidence 468999999975
No 44
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus}
Probab=28.55 E-value=36 Score=21.69 Aligned_cols=18 Identities=6% Similarity=-0.047 Sum_probs=14.3
Q ss_pred cCCccCCCcEEEcCCCCC
Q psy9188 76 QHMTLEPYDLILTGKAGF 93 (104)
Q Consensus 76 ~~~tL~pGDvi~tGTp~g 93 (104)
+...|.+||+|-.|...-
T Consensus 113 ~~~~L~~gd~i~~G~~~~ 130 (140)
T 2jpe_A 113 KPQQIPIDSTVSFGASTR 130 (140)
T ss_dssp SCCEECTTCCBBCSSCCC
T ss_pred ccEECCCCCEEEECCceE
Confidence 467899999999987543
No 45
>2dnf_A Doublecortin domain-containing protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens}
Probab=28.19 E-value=16 Score=22.95 Aligned_cols=44 Identities=16% Similarity=0.343 Sum_probs=31.6
Q ss_pred CCeeEEEEECCEEEeecc----cCccCCCHHHHHHHHHcCCccCCCcE
Q psy9188 42 DDVPLWLKVNGELRQKST----TGDMLFKTGDLISYISQHMTLEPYDL 85 (104)
Q Consensus 42 ~~l~i~~~vNG~~~q~~~----t~~m~~~~~~lia~~s~~~tL~pGDv 85 (104)
....|.+..||...-.+. ......+++++++.+++.+.|.-|-|
T Consensus 13 ~pk~I~v~rNGD~~~~g~~v~i~~~~~~sfe~lL~~lT~~v~l~~GaV 60 (108)
T 2dnf_A 13 EPCTIFLIANGDLINPASRLLIPRKTLNQWDHVLQMVTEKITLRSGAV 60 (108)
T ss_dssp CCEEEEECBTTCSSSCCEEEEECHHHHTCHHHHHHHHHHHCCCTTSSC
T ss_pred cceEEEEEeCCCCCCCCEEEEECCccccCHHHHHHHHHHhhCCCCCCE
Confidence 346788888886644332 12366899999999999888887743
No 46
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A*
Probab=27.72 E-value=30 Score=21.64 Aligned_cols=15 Identities=20% Similarity=0.151 Sum_probs=12.8
Q ss_pred cCCccCCCcEEEcCC
Q psy9188 76 QHMTLEPYDLILTGK 90 (104)
Q Consensus 76 ~~~tL~pGDvi~tGT 90 (104)
+...|.+||+|.-|.
T Consensus 86 ~~~~L~~Gd~i~iG~ 100 (128)
T 1r21_A 86 EPVRLKHGDVITIID 100 (128)
T ss_dssp SCEECCTTEEEECSS
T ss_pred CcEEcCCCCEEEECC
Confidence 357899999999985
No 47
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5
Probab=27.29 E-value=25 Score=20.28 Aligned_cols=12 Identities=17% Similarity=0.315 Sum_probs=9.6
Q ss_pred CCccCCCcEEEc
Q psy9188 77 HMTLEPYDLILT 88 (104)
Q Consensus 77 ~~tL~pGDvi~t 88 (104)
...|++||+|..
T Consensus 34 ~aGl~~GD~I~~ 45 (87)
T 2i6v_A 34 SIGLQDGDMAVA 45 (87)
T ss_dssp HTTCCTTCEEEE
T ss_pred HCCCCCCCEEEE
Confidence 347999999974
No 48
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A*
Probab=27.09 E-value=38 Score=21.96 Aligned_cols=14 Identities=36% Similarity=0.377 Sum_probs=12.2
Q ss_pred CCccCCCcEEEcCC
Q psy9188 77 HMTLEPYDLILTGK 90 (104)
Q Consensus 77 ~~tL~pGDvi~tGT 90 (104)
...|..||+|..|.
T Consensus 100 ~~~L~~GD~I~lG~ 113 (151)
T 2jqj_A 100 DYILKNGDRIVFGK 113 (151)
T ss_dssp CEEECSSEEEEETT
T ss_pred ceECCCCCEEEECC
Confidence 36899999999997
No 49
>2k1g_A Lipoprotein SPR; solution structure, bacterial lipoprotein, cysteine PEPT NPLC/P60 family, construct optimized, membrane, palmitate; NMR {Escherichia coli}
Probab=26.84 E-value=22 Score=23.14 Aligned_cols=13 Identities=31% Similarity=0.304 Sum_probs=10.8
Q ss_pred CccCCCcEEEcCC
Q psy9188 78 MTLEPYDLILTGK 90 (104)
Q Consensus 78 ~tL~pGDvi~tGT 90 (104)
..|+|||+|+-.+
T Consensus 66 ~~l~pGDLvFf~~ 78 (135)
T 2k1g_A 66 SNLRTGDLVLFRA 78 (135)
T ss_dssp GGCCTTEEEEEEE
T ss_pred HHccCCcEEEECC
Confidence 5689999999765
No 50
>3gt2_A Putative uncharacterized protein; P60 domain, antigen, unknown function; HET: EDO; 1.75A {Mycobacterium avium subsp}
Probab=25.91 E-value=28 Score=22.48 Aligned_cols=14 Identities=29% Similarity=0.297 Sum_probs=11.5
Q ss_pred CccCCCcEEEcCCC
Q psy9188 78 MTLEPYDLILTGKA 91 (104)
Q Consensus 78 ~tL~pGDvi~tGTp 91 (104)
..|+|||+|+.++.
T Consensus 88 ~~~~pGDlvff~~~ 101 (142)
T 3gt2_A 88 QQARKGDLIFYGPE 101 (142)
T ss_dssp GGCCTTCEEEESGG
T ss_pred hhCCCCCEEEeCCC
Confidence 46899999998763
No 51
>2jyx_A Lipoprotein SPR; solution structure, construct optimized, membrane, palmitate, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli K12} PDB: 2k1g_A
Probab=25.41 E-value=28 Score=22.30 Aligned_cols=14 Identities=29% Similarity=0.294 Sum_probs=11.4
Q ss_pred CccCCCcEEEcCCC
Q psy9188 78 MTLEPYDLILTGKA 91 (104)
Q Consensus 78 ~tL~pGDvi~tGTp 91 (104)
..|+|||+|+..+.
T Consensus 66 ~~l~pGDLvff~~~ 79 (136)
T 2jyx_A 66 SNLRTGDLVLFRAG 79 (136)
T ss_dssp TTCCTTEEEEEECS
T ss_pred HhCCCCCEEEECCC
Confidence 57899999997663
No 52
>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}
Probab=25.36 E-value=28 Score=19.87 Aligned_cols=11 Identities=27% Similarity=0.274 Sum_probs=9.1
Q ss_pred CccCCCcEEEc
Q psy9188 78 MTLEPYDLILT 88 (104)
Q Consensus 78 ~tL~pGDvi~t 88 (104)
..|++||+|+.
T Consensus 44 aGl~~GD~I~~ 54 (90)
T 2eaq_A 44 SQLQVDDEIIA 54 (90)
T ss_dssp TTCCTTCEEEE
T ss_pred cCCCCCCEEEE
Confidence 36999999975
No 53
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A* 1k2m_A* 1k2n_A*
Probab=24.68 E-value=29 Score=22.88 Aligned_cols=12 Identities=25% Similarity=0.144 Sum_probs=10.6
Q ss_pred CCccCCCcEEEc
Q psy9188 77 HMTLEPYDLILT 88 (104)
Q Consensus 77 ~~tL~pGDvi~t 88 (104)
...|.+||+|-.
T Consensus 97 ~~~L~~GD~I~l 108 (158)
T 1dmz_A 97 KFLLQDGDEIKI 108 (158)
T ss_dssp EEECCSSCCEES
T ss_pred eEEcCCCCEEEE
Confidence 478999999998
No 54
>2j58_A WZA, outer membrane lipoprotein WZA; membrane protein; 2.26A {Escherichia coli} PDB: 2w8i_A 2w8h_A*
Probab=24.32 E-value=58 Score=24.35 Aligned_cols=39 Identities=18% Similarity=0.137 Sum_probs=27.5
Q ss_pred eeEEEEECCEEEeecccCccCCCHHHHHHH--HHcCCccCCCcEEEcCC
Q psy9188 44 VPLWLKVNGELRQKSTTGDMLFKTGDLISY--ISQHMTLEPYDLILTGK 90 (104)
Q Consensus 44 l~i~~~vNG~~~q~~~t~~m~~~~~~lia~--~s~~~tL~pGDvi~tGT 90 (104)
-.+.+..+|+.. ..++.+++.. .+....|++||+|.--.
T Consensus 191 ~~V~l~R~g~~~--------~idl~~ll~~g~~~~~~~L~~GD~I~Vp~ 231 (359)
T 2j58_A 191 RNVVLTHNGKDT--------KISLYALMQKGDLTQNHLLYHGDILFIPS 231 (359)
T ss_dssp TCEEEEETTEEE--------EECHHHHHTTCBGGGCCBCCTTCEEEECB
T ss_pred ceEEEEECCeEE--------EEEHHHHhhcCCcccceeccCCCeEEEee
Confidence 356667788753 3466666654 36789999999998764
No 55
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5
Probab=24.06 E-value=30 Score=20.68 Aligned_cols=10 Identities=20% Similarity=0.302 Sum_probs=8.8
Q ss_pred ccCCCcEEEc
Q psy9188 79 TLEPYDLILT 88 (104)
Q Consensus 79 tL~pGDvi~t 88 (104)
.|++||+|..
T Consensus 54 Gl~~GDvI~~ 63 (105)
T 2i4s_A 54 GLQDGDMAVA 63 (105)
T ss_dssp TCCTTCEEEE
T ss_pred CCCCCCEEEE
Confidence 6999999974
No 56
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A
Probab=23.96 E-value=31 Score=19.58 Aligned_cols=11 Identities=36% Similarity=0.643 Sum_probs=9.1
Q ss_pred CccCCCcEEEc
Q psy9188 78 MTLEPYDLILT 88 (104)
Q Consensus 78 ~tL~pGDvi~t 88 (104)
..|++||+|+.
T Consensus 42 aGL~~GD~I~~ 52 (87)
T 2pa1_A 42 ADLRPGDIIVA 52 (87)
T ss_dssp TTCCTTCEEEE
T ss_pred cCCCCCCEEEE
Confidence 45999999975
No 57
>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens}
Probab=23.76 E-value=18 Score=20.14 Aligned_cols=14 Identities=0% Similarity=-0.261 Sum_probs=1.2
Q ss_pred ccCCCcEEEcCCCC
Q psy9188 79 TLEPYDLILTGKAG 92 (104)
Q Consensus 79 tL~pGDvi~tGTp~ 92 (104)
.+.|||+|+...|.
T Consensus 3 ~~~~G~~il~~~~~ 16 (64)
T 2odd_A 3 LYFQGENLYFQGDS 16 (64)
T ss_dssp ------------CC
T ss_pred cCCCCCEEeeCCCC
Confidence 47899999998874
No 58
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*
Probab=23.75 E-value=32 Score=19.74 Aligned_cols=11 Identities=27% Similarity=0.123 Sum_probs=9.0
Q ss_pred CccCCCcEEEc
Q psy9188 78 MTLEPYDLILT 88 (104)
Q Consensus 78 ~tL~pGDvi~t 88 (104)
..|++||+|+.
T Consensus 43 aGl~~GD~I~~ 53 (91)
T 2pkt_A 43 ANLCIGDVITA 53 (91)
T ss_dssp TTCCTTCEEEE
T ss_pred cCCCCCCEEEE
Confidence 45999999975
No 59
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A
Probab=23.64 E-value=31 Score=22.41 Aligned_cols=14 Identities=29% Similarity=0.294 Sum_probs=12.0
Q ss_pred CCccCCCcEEEcCC
Q psy9188 77 HMTLEPYDLILTGK 90 (104)
Q Consensus 77 ~~tL~pGDvi~tGT 90 (104)
...|.+||+|..|.
T Consensus 119 ~~~L~~GD~I~iG~ 132 (143)
T 2kb3_A 119 AQVMQTGDEIQIGK 132 (143)
T ss_dssp EEECCTTEEEEETT
T ss_pred eEECCCCCEEEECC
Confidence 36899999999886
No 60
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=23.49 E-value=32 Score=19.65 Aligned_cols=10 Identities=50% Similarity=0.959 Sum_probs=8.6
Q ss_pred ccCCCcEEEc
Q psy9188 79 TLEPYDLILT 88 (104)
Q Consensus 79 tL~pGDvi~t 88 (104)
.|++||+|+.
T Consensus 49 Gl~~GD~I~~ 58 (91)
T 1m5z_A 49 GLKPYDRLLQ 58 (91)
T ss_dssp TCCTTCEEEE
T ss_pred CCCCCCEEEE
Confidence 4999999975
No 61
>2hbw_A NLP/P60 protein; NLP/P60 family protein, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; HET: UNL; 1.05A {Anabaena variabilis} PDB: 2evr_A 2fg0_A
Probab=23.38 E-value=31 Score=24.46 Aligned_cols=15 Identities=33% Similarity=0.441 Sum_probs=12.1
Q ss_pred CccCCCcEEEcCCCC
Q psy9188 78 MTLEPYDLILTGKAG 92 (104)
Q Consensus 78 ~tL~pGDvi~tGTp~ 92 (104)
..|+|||+|+.++..
T Consensus 159 ~~l~pGDLvff~~~~ 173 (235)
T 2hbw_A 159 DELAPGDLVFFGTPV 173 (235)
T ss_dssp GGCCTTCEEEEECSS
T ss_pred hhCCCCCEEEECCCC
Confidence 458999999998753
No 62
>1eik_A RNA polymerase subunit RPB5; RPBH, OCSP, NESG, protein structure initiative, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.78.1.1
Probab=23.34 E-value=33 Score=20.46 Aligned_cols=14 Identities=7% Similarity=0.237 Sum_probs=10.7
Q ss_pred HHcCCccCCCcEEE
Q psy9188 74 ISQHMTLEPYDLIL 87 (104)
Q Consensus 74 ~s~~~tL~pGDvi~ 87 (104)
++++..+++||||=
T Consensus 45 var~~G~k~GdVvk 58 (77)
T 1eik_A 45 VAKAIGAKRGDIVK 58 (77)
T ss_dssp HHHGGGCCTTCEEE
T ss_pred hhHHhCCCCCCEEE
Confidence 34678899999873
No 63
>4ayb_H DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_H 2y0s_H 2waq_H 4b1o_H 4b1p_Z 2pmz_H 3hkz_H
Probab=22.97 E-value=24 Score=21.38 Aligned_cols=13 Identities=23% Similarity=0.606 Sum_probs=10.0
Q ss_pred HHcCCccCCCcEE
Q psy9188 74 ISQHMTLEPYDLI 86 (104)
Q Consensus 74 ~s~~~tL~pGDvi 86 (104)
++++..++|||||
T Consensus 51 va~~~g~k~GdVv 63 (84)
T 4ayb_H 51 VARSINAKPGDII 63 (84)
T ss_dssp HHHHHTCCTTCEE
T ss_pred hHHhhCCCCCCEE
Confidence 3456689999997
No 64
>3kw0_A Cysteine peptidase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: LYS; 2.50A {Bacillus cereus}
Probab=22.79 E-value=32 Score=23.87 Aligned_cols=13 Identities=23% Similarity=0.268 Sum_probs=11.0
Q ss_pred CccCCCcEEEcCC
Q psy9188 78 MTLEPYDLILTGK 90 (104)
Q Consensus 78 ~tL~pGDvi~tGT 90 (104)
..|++||||+.-+
T Consensus 38 ~~l~~GDlif~~~ 50 (214)
T 3kw0_A 38 NVLKTGDIFLCSG 50 (214)
T ss_dssp TTCCTTCEEEEEE
T ss_pred hhCCCCCEEEEeC
Confidence 5899999999854
No 65
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=22.02 E-value=36 Score=19.72 Aligned_cols=10 Identities=40% Similarity=0.730 Sum_probs=8.5
Q ss_pred ccCCCcEEEc
Q psy9188 79 TLEPYDLILT 88 (104)
Q Consensus 79 tL~pGDvi~t 88 (104)
.|++||+|+.
T Consensus 47 GL~~GD~I~~ 56 (94)
T 1vb7_A 47 DLRPGDIIVA 56 (94)
T ss_dssp TCCTTCEEEE
T ss_pred CCCCCCEEEE
Confidence 5999999974
No 66
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}
Probab=21.84 E-value=36 Score=19.37 Aligned_cols=9 Identities=22% Similarity=0.364 Sum_probs=8.0
Q ss_pred cCCCcEEEc
Q psy9188 80 LEPYDLILT 88 (104)
Q Consensus 80 L~pGDvi~t 88 (104)
|++||+|+.
T Consensus 46 L~~GD~I~~ 54 (90)
T 2q9v_A 46 LRSGDELIS 54 (90)
T ss_dssp CCTTCEEEE
T ss_pred CCCCCEEEE
Confidence 999999974
No 67
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}
Probab=21.71 E-value=36 Score=19.76 Aligned_cols=10 Identities=30% Similarity=0.338 Sum_probs=8.4
Q ss_pred ccCCCcEEEc
Q psy9188 79 TLEPYDLILT 88 (104)
Q Consensus 79 tL~pGDvi~t 88 (104)
.|++||+|+.
T Consensus 50 Gl~~GD~I~~ 59 (98)
T 2jxo_A 50 GLRAQDRIVE 59 (98)
T ss_dssp TCCTTCEEEE
T ss_pred CCCCCCEEEE
Confidence 4999999974
No 68
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A
Probab=21.66 E-value=37 Score=18.63 Aligned_cols=9 Identities=22% Similarity=0.508 Sum_probs=8.1
Q ss_pred cCCCcEEEc
Q psy9188 80 LEPYDLILT 88 (104)
Q Consensus 80 L~pGDvi~t 88 (104)
|++||+|+.
T Consensus 40 l~~GD~I~~ 48 (81)
T 2rcz_A 40 IQEGDVVLK 48 (81)
T ss_dssp CCTTCEEEE
T ss_pred CCCCCEEEE
Confidence 999999975
No 69
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}
Probab=21.45 E-value=36 Score=20.00 Aligned_cols=10 Identities=30% Similarity=0.388 Sum_probs=8.5
Q ss_pred ccCCCcEEEc
Q psy9188 79 TLEPYDLILT 88 (104)
Q Consensus 79 tL~pGDvi~t 88 (104)
.|++||+|+.
T Consensus 17 GL~~GD~I~~ 26 (91)
T 2kjp_A 17 KIEVGDKIIS 26 (91)
T ss_dssp CCCSSCEEEE
T ss_pred cCCCCCEEEE
Confidence 5999999975
No 70
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A
Probab=21.43 E-value=37 Score=19.45 Aligned_cols=11 Identities=36% Similarity=0.474 Sum_probs=8.8
Q ss_pred CccCCCcEEEc
Q psy9188 78 MTLEPYDLILT 88 (104)
Q Consensus 78 ~tL~pGDvi~t 88 (104)
..|++||+|+.
T Consensus 43 aGl~~GD~I~~ 53 (91)
T 2vsp_A 43 AGLEDEDVIIE 53 (91)
T ss_dssp TTCCTTCEEEE
T ss_pred cCCCCCCEEEE
Confidence 34999999975
No 71
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=21.35 E-value=1.1e+02 Score=16.90 Aligned_cols=28 Identities=25% Similarity=0.214 Sum_probs=21.1
Q ss_pred EEEEECCEEEeecccCccCCCHHHHHHHHHcCCccCCCcEEEcCCCC
Q psy9188 46 LWLKVNGELRQKSTTGDMLFKTGDLISYISQHMTLEPYDLILTGKAG 92 (104)
Q Consensus 46 i~~~vNG~~~q~~~t~~m~~~~~~lia~~s~~~tL~pGDvi~tGTp~ 92 (104)
+.+.|||+.+.. ...|.+||.|.-=.|.
T Consensus 47 ~~v~vNg~~v~~-------------------~~~L~~gD~V~i~ppv 74 (77)
T 2q5w_D 47 FQVAVNEEFVQK-------------------SDFIQPNDTVALIPPV 74 (77)
T ss_dssp CEEEETTEEECT-------------------TSEECTTCEEEEECSC
T ss_pred EEEEECCEECCC-------------------CCCcCCCCEEEEECCC
Confidence 478999998853 2589999988765554
No 72
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A
Probab=21.24 E-value=38 Score=19.55 Aligned_cols=10 Identities=40% Similarity=0.581 Sum_probs=8.7
Q ss_pred ccCCCcEEEc
Q psy9188 79 TLEPYDLILT 88 (104)
Q Consensus 79 tL~pGDvi~t 88 (104)
.|++||+|+.
T Consensus 51 gL~~GD~I~~ 60 (95)
T 1mfg_A 51 LLQPGDKIIQ 60 (95)
T ss_dssp TCCTTCEEEE
T ss_pred CCCCCCEEEE
Confidence 7999999974
No 73
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}
Probab=21.11 E-value=38 Score=19.26 Aligned_cols=10 Identities=20% Similarity=0.252 Sum_probs=8.6
Q ss_pred ccCCCcEEEc
Q psy9188 79 TLEPYDLILT 88 (104)
Q Consensus 79 tL~pGDvi~t 88 (104)
.|++||+|+.
T Consensus 44 Gl~~GD~I~~ 53 (89)
T 2q3g_A 44 GVAVGDWVLS 53 (89)
T ss_dssp TCCTTCEEEE
T ss_pred CCCCCCEEEE
Confidence 5999999974
No 74
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A
Probab=21.10 E-value=34 Score=19.24 Aligned_cols=11 Identities=27% Similarity=0.389 Sum_probs=9.1
Q ss_pred CccCCCcEEEc
Q psy9188 78 MTLEPYDLILT 88 (104)
Q Consensus 78 ~tL~pGDvi~t 88 (104)
..|++||+|+.
T Consensus 41 aGl~~GD~I~~ 51 (85)
T 1rgw_A 41 SQLSQGDLVVA 51 (85)
T ss_dssp SSCCCCSBEEE
T ss_pred cCCCCCCEEEE
Confidence 46999999975
No 75
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A
Probab=20.92 E-value=39 Score=19.74 Aligned_cols=9 Identities=33% Similarity=0.412 Sum_probs=8.0
Q ss_pred cCCCcEEEc
Q psy9188 80 LEPYDLILT 88 (104)
Q Consensus 80 L~pGDvi~t 88 (104)
|++||+|+.
T Consensus 50 L~~GD~I~~ 58 (96)
T 2qkv_A 50 LQRGDIITK 58 (96)
T ss_dssp CCTTCEEEE
T ss_pred CCCCCEEEE
Confidence 899999974
No 76
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}
Probab=20.91 E-value=39 Score=19.18 Aligned_cols=11 Identities=36% Similarity=0.374 Sum_probs=9.2
Q ss_pred CccCCCcEEEc
Q psy9188 78 MTLEPYDLILT 88 (104)
Q Consensus 78 ~tL~pGDvi~t 88 (104)
..|++||+|+.
T Consensus 41 aGl~~GD~I~~ 51 (88)
T 3bpu_A 41 RGLKEGDLIVE 51 (88)
T ss_dssp TTCCTTCEEEE
T ss_pred hCCCCCCEEEE
Confidence 47999999974
No 77
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}
Probab=20.82 E-value=39 Score=19.11 Aligned_cols=10 Identities=20% Similarity=0.375 Sum_probs=8.6
Q ss_pred ccCCCcEEEc
Q psy9188 79 TLEPYDLILT 88 (104)
Q Consensus 79 tL~pGDvi~t 88 (104)
.|++||+|+.
T Consensus 44 Gl~~GD~I~~ 53 (88)
T 2uzc_A 44 NVRIGDVVLS 53 (88)
T ss_dssp TCCTTCEEEE
T ss_pred CCCCCCEEEE
Confidence 5999999975
No 78
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}
Probab=20.80 E-value=39 Score=19.48 Aligned_cols=10 Identities=30% Similarity=0.441 Sum_probs=8.4
Q ss_pred ccCCCcEEEc
Q psy9188 79 TLEPYDLILT 88 (104)
Q Consensus 79 tL~pGDvi~t 88 (104)
.|++||+|+.
T Consensus 47 ~L~~GD~I~~ 56 (95)
T 2vwr_A 47 RLSSNDRVLA 56 (95)
T ss_dssp CCCTTCEEEE
T ss_pred CCCCCCEEEE
Confidence 3999999975
No 79
>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}
Probab=20.76 E-value=40 Score=18.96 Aligned_cols=9 Identities=33% Similarity=0.604 Sum_probs=8.0
Q ss_pred cCCCcEEEc
Q psy9188 80 LEPYDLILT 88 (104)
Q Consensus 80 L~pGDvi~t 88 (104)
|++||+|+.
T Consensus 44 l~~GD~I~~ 52 (85)
T 2i04_A 44 METGDVIVS 52 (85)
T ss_dssp CCTTCEEEE
T ss_pred CCCCCEEEE
Confidence 999999974
No 80
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}
Probab=20.72 E-value=39 Score=19.46 Aligned_cols=10 Identities=20% Similarity=0.155 Sum_probs=8.3
Q ss_pred ccCCCcEEEc
Q psy9188 79 TLEPYDLILT 88 (104)
Q Consensus 79 tL~pGDvi~t 88 (104)
.|++||+|+.
T Consensus 51 Gl~~GD~I~~ 60 (97)
T 2w4f_A 51 GVRVGDKLLE 60 (97)
T ss_dssp TCCTTCEEEE
T ss_pred CCCCCCEEEE
Confidence 4999999974
No 81
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.71 E-value=39 Score=19.52 Aligned_cols=11 Identities=45% Similarity=0.492 Sum_probs=9.0
Q ss_pred CccCCCcEEEc
Q psy9188 78 MTLEPYDLILT 88 (104)
Q Consensus 78 ~tL~pGDvi~t 88 (104)
.-|++||+|+.
T Consensus 48 aGl~~GD~I~~ 58 (94)
T 2eeg_A 48 AALCPGDLIQA 58 (94)
T ss_dssp TTCCTTCEEEE
T ss_pred cCCCCCCEEEE
Confidence 35999999974
No 82
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Probab=20.59 E-value=40 Score=19.53 Aligned_cols=9 Identities=44% Similarity=0.423 Sum_probs=8.1
Q ss_pred cCCCcEEEc
Q psy9188 80 LEPYDLILT 88 (104)
Q Consensus 80 L~pGDvi~t 88 (104)
|++||+|+.
T Consensus 56 L~~GD~I~~ 64 (98)
T 1ihj_A 56 LKVGDRILS 64 (98)
T ss_dssp CCTTCEEEE
T ss_pred CCCCCEEEE
Confidence 999999975
No 83
>1hmj_A RPB5, protein (subunit H); RNA polymerase, archaea; NMR {Methanocaldococcus jannaschii} SCOP: d.78.1.1
Probab=20.53 E-value=35 Score=20.43 Aligned_cols=13 Identities=15% Similarity=0.146 Sum_probs=10.5
Q ss_pred HcCCccCCCcEEE
Q psy9188 75 SQHMTLEPYDLIL 87 (104)
Q Consensus 75 s~~~tL~pGDvi~ 87 (104)
+++..+++||||=
T Consensus 44 ar~~G~k~GdVvk 56 (78)
T 1hmj_A 44 IQEIGAKEGDVVR 56 (78)
T ss_pred hHHhCCCCCCEEE
Confidence 4678899999984
No 84
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=20.27 E-value=39 Score=19.83 Aligned_cols=13 Identities=31% Similarity=0.133 Sum_probs=10.5
Q ss_pred cCCccCCCcEEEc
Q psy9188 76 QHMTLEPYDLILT 88 (104)
Q Consensus 76 ~~~tL~pGDvi~t 88 (104)
....|++||+|+.
T Consensus 44 ~~aGL~~GD~I~~ 56 (96)
T 1ujv_A 44 GCPGLCEGDLIVE 56 (96)
T ss_dssp GSTTCCSSCEEEE
T ss_pred ccCCCCCCCEEEE
Confidence 4578999999973
No 85
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}
Probab=20.17 E-value=41 Score=19.20 Aligned_cols=9 Identities=44% Similarity=0.309 Sum_probs=8.1
Q ss_pred cCCCcEEEc
Q psy9188 80 LEPYDLILT 88 (104)
Q Consensus 80 L~pGDvi~t 88 (104)
|++||+|+.
T Consensus 48 L~~GD~I~~ 56 (92)
T 2qg1_A 48 LMQGDQILM 56 (92)
T ss_dssp CCTTCEEEE
T ss_pred CCCCCEEEE
Confidence 999999975
No 86
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Probab=20.06 E-value=42 Score=19.14 Aligned_cols=10 Identities=20% Similarity=0.331 Sum_probs=8.4
Q ss_pred ccCCCcEEEc
Q psy9188 79 TLEPYDLILT 88 (104)
Q Consensus 79 tL~pGDvi~t 88 (104)
.|++||+|+.
T Consensus 45 Gl~~GD~I~~ 54 (90)
T 2he4_A 45 GLRAQDRLIE 54 (90)
T ss_dssp TCCTTCEEEE
T ss_pred CCCCCCEEEE
Confidence 3999999975
No 87
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}
Probab=20.06 E-value=41 Score=19.40 Aligned_cols=9 Identities=33% Similarity=0.682 Sum_probs=8.0
Q ss_pred cCCCcEEEc
Q psy9188 80 LEPYDLILT 88 (104)
Q Consensus 80 L~pGDvi~t 88 (104)
|++||+|+.
T Consensus 51 l~~GD~I~~ 59 (97)
T 2jil_A 51 IKPGDRLLS 59 (97)
T ss_dssp CCTTCEEEE
T ss_pred CCCCCEEEE
Confidence 999999975
Done!