RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9188
(104 letters)
>1saw_A Hypothetical protein FLJ36880; structural genomics,
fumarylacetoacetatehydrolase family, unknown function;
2.20A {Homo sapiens} SCOP: d.177.1.1
Length = 225
Score = 142 bits (361), Expect = 1e-44
Identities = 44/84 (52%), Positives = 60/84 (71%)
Query: 6 LQKHAREHGLPWTVGKSFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLF 65
+Q ++ GLPWT+ KSF +CPVS F+P+ +I DP + LWLKVNGELRQ+ T M+F
Sbjct: 109 VQDECKKKGLPWTLAKSFTASCPVSAFVPKEKIPDPHKLKLWLKVNGELRQEGETSSMIF 168
Query: 66 KTGDLISYISQHMTLEPYDLILTG 89
+ISY+S+ +TLE D+ILTG
Sbjct: 169 SIPYIISYVSKIITLEEGDIILTG 192
>3s52_A Putative fumarylacetoacetate hydrolase family Pro; csgid,
structural genomics, center for structural genomics O
infectious diseases; 2.01A {Yersinia pestis} PDB: 1nr9_A
Length = 221
Score = 141 bits (359), Expect = 3e-44
Identities = 37/84 (44%), Positives = 50/84 (59%)
Query: 6 LQKHAREHGLPWTVGKSFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLF 65
LQ ++ G PW K+FD +CP+S FIP E D L L +NGE+RQ+ T DM+
Sbjct: 110 LQAGFKKAGQPWEKAKAFDGSCPISGFIPVAEFGDAQQADLSLTINGEIRQQGNTRDMIT 169
Query: 66 KTGDLISYISQHMTLEPYDLILTG 89
LISY+S+ TL D++LTG
Sbjct: 170 PIIPLISYMSRFFTLRAGDIVLTG 193
>3l53_A Putative fumarylacetoacetate isomerase/hydrolase; structural
genomics, PSI-2, protein structure initiative; HET: TAR;
2.10A {Oleispira antarctica} PDB: 3v77_A*
Length = 224
Score = 136 bits (344), Expect = 6e-42
Identities = 32/86 (37%), Positives = 56/86 (65%), Gaps = 2/86 (2%)
Query: 6 LQKHAREHGLPWTVGKSFDTACPVSDFIPEHEIKDPD--DVPLWLKVNGELRQKSTTGDM 63
+Q +E G PW KSFD ACP+++F+ + + + + L L+ NG+ +Q+ ++ +M
Sbjct: 106 VQDQLKEKGHPWERAKSFDGACPLTEFVAVNLASEDEWQAIGLTLEKNGQFQQQGSSAEM 165
Query: 64 LFKTGDLISYISQHMTLEPYDLILTG 89
LF LI+++S+H +L+P D+ILTG
Sbjct: 166 LFPILPLIAHMSEHFSLQPGDVILTG 191
>1nkq_A Hypothetical 28.8 kDa protein in PSD1-SKO1 intergenic region;
dimer, PSI, protein structure initiative; 2.20A
{Saccharomyces cerevisiae} SCOP: d.177.1.1
Length = 259
Score = 134 bits (340), Expect = 5e-41
Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Query: 6 LQKHAREHGLPWTVGKSFDTACPVSDFIPEHEIKDP-----DDVPLWLKVNGELRQKSTT 60
+Q A++ GLPWT+ K FDT P+S + + D + VNG+LRQ T
Sbjct: 127 VQDEAKKKGLPWTISKGFDTFMPISAIVSREKFSSYKSNLQDIFRVKCSVNGQLRQDGGT 186
Query: 61 GDMLFKTGDLISYISQHMTLEPYDLILTG 89
ML ++ +IS ++LEP D+ILTG
Sbjct: 187 NLMLHPLHKILQHISTMISLEPGDIILTG 215
>1wzo_A HPCE; structural genomics, riken structural genomics/proteom
initiative, RSGI, NPPSFA, isomerase; 1.90A {Thermus
thermophilus}
Length = 246
Score = 121 bits (305), Expect = 6e-36
Identities = 34/79 (43%), Positives = 47/79 (59%)
Query: 11 REHGLPWTVGKSFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDL 70
P K DT P+ F+ E++DP D+ L VNGELRQ+ T ML+ +L
Sbjct: 136 TNTFRPPIRAKGRDTFLPLGPFLVVEEVEDPQDLWLRAYVNGELRQEGHTSRMLYSVAEL 195
Query: 71 ISYISQHMTLEPYDLILTG 89
+ +IS+ MTLEPYD++LTG
Sbjct: 196 LEFISEFMTLEPYDVLLTG 214
>1gtt_A 4-hydroxyphenylacetate degradation bifunctional
isomerase/decarboxylase; lyase, bifunctional enzyme,
multifunctional enzyme decarboxylase; 1.7A {Escherichia
coli} SCOP: d.177.1.1 d.177.1.1 PDB: 1i7o_A
Length = 429
Score = 118 bits (298), Expect = 2e-33
Identities = 34/80 (42%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 11 REHGLPWTVGKSFDTACPVSDFI-PEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGD 69
+ P KS D P+ I P+ I DP ++ L VNGELRQ+ TT D++F
Sbjct: 315 ENYYRPNLRVKSRDGLTPMLSTIVPKEAIPDPHNLTLRTFVNGELRQQGTTADLIFSVPF 374
Query: 70 LISYISQHMTLEPYDLILTG 89
LI+Y+S+ MTL P D+I TG
Sbjct: 375 LIAYLSEFMTLNPGDMIATG 394
Score = 113 bits (284), Expect = 2e-31
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 16 PWTVGKSFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYIS 75
P K D CP+ + + + + D++ ++ ++NG T D+ L+S +S
Sbjct: 105 PAIKAKCRDGFCPIGETV---ALSNVDNLTIYTEINGRPADHWNTADLQRNAAQLLSALS 161
Query: 76 QHMTLEPYDLILTG 89
+ TL P D IL G
Sbjct: 162 EFATLNPGDAILLG 175
>2dfu_A Probable 2-hydroxyhepta-2,4-diene-1,7-dioate ISOM;
2-hydroxyhepta-2,4-diene-1,7-dioate isomerase,
structural GE NPPSFA; 2.20A {Thermus thermophilus}
Length = 264
Score = 112 bits (283), Expect = 2e-32
Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 5/83 (6%)
Query: 10 AR---EHGLPWTVGKSFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFK 66
AR + L W KS D P+ ++ E ++ +P D + VNG LRQ+ T M+F
Sbjct: 148 ARDVQKKDLQWVRAKSADKFLPLGPWL-ETDL-NPQDTWVRTYVNGTLRQEGHTSQMIFS 205
Query: 67 TGDLISYISQHMTLEPYDLILTG 89
+++SYIS MTLEP D++LTG
Sbjct: 206 VAEILSYISTFMTLEPLDVVLTG 228
>3rr6_A Putative uncharacterized protein; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid; 1.58A {Mycobacterium abscessus} PDB: 3qdf_A
Length = 265
Score = 111 bits (280), Expect = 7e-32
Identities = 30/78 (38%), Positives = 46/78 (58%), Gaps = 2/78 (2%)
Query: 12 EHGLPWTVGKSFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLI 71
WT K DT CP+ +I ++ DP D+ + +VNG++RQ+S T +L G ++
Sbjct: 157 RADGQWTRAKGHDTFCPLGPWI-VTDL-DPADLEIRTEVNGQVRQRSRTSLLLHDVGAIV 214
Query: 72 SYISQHMTLEPYDLILTG 89
++S MTL P D+ILTG
Sbjct: 215 EWVSAVMTLLPGDVILTG 232
>3r6o_A 2-hydroxyhepta-2,4-diene-1, 7-dioateisomerase; ssgcid, struc
genomics, seattle structural genomics center for
infectious isomerase; 1.95A {Mycobacterium abscessus}
Length = 329
Score = 110 bits (276), Expect = 7e-31
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 5/89 (5%)
Query: 6 LQKHAREHGLP----WTVGKSFDTACPVSDFI-PEHEIKDPDDVPLWLKVNGELRQKSTT 60
+ G P GK + T CP ++ + L++NGELRQ +T
Sbjct: 195 VALPFGFGGSPLQAQVVRGKGYPTFCPTGPWLFTTGSDTTFETFDFELRINGELRQSGST 254
Query: 61 GDMLFKTGDLISYISQHMTLEPYDLILTG 89
DM +++ +S + L D+ILTG
Sbjct: 255 VDMTLGFAEVVETVSATIALRAGDIILTG 283
>2q18_X 2-keto-3-deoxy-D-arabinonate dehydratase; FAH-family fold, lyase;
2.10A {Sulfolobus solfataricus} PDB: 2q19_X 2q1a_X
2q1c_X 2q1d_X 3bqb_A
Length = 293
Score = 103 bits (258), Expect = 1e-28
Identities = 20/84 (23%), Positives = 32/84 (38%), Gaps = 5/84 (5%)
Query: 11 REHGLPWTVGKSFDTACPVSDFI-PEHEIKDPDDVPLWLKVNGELR----QKSTTGDMLF 65
E+ L K + C I EIK+P + + LK+ E R T M
Sbjct: 172 AENPLYLPQSKIYAGCCAFGPVIVTSDEIKNPYSLDITLKIVREGRVFFEGSVNTNKMRR 231
Query: 66 KTGDLISYISQHMTLEPYDLILTG 89
K + I Y+ + + ++ TG
Sbjct: 232 KIEEQIQYLIRDNPIPDGTILTTG 255
>3lzk_A Fumarylacetoacetate hydrolase family protein; structural genomics,
PSI-2, protein structure initiative; 1.90A
{Sinorhizobium meliloti}
Length = 359
Score = 83.8 bits (207), Expect = 7e-21
Identities = 20/88 (22%), Positives = 33/88 (37%), Gaps = 4/88 (4%)
Query: 6 LQKHAREHGLPWTVGKSFDTACPV---SDFIPEHEIKDPDDVPLWLKVNGELRQKSTTG- 61
L G + K PV + + E +PL + +NGE ++ G
Sbjct: 197 LIPGELAKGFGFYQSKPSSAFSPVAVTPEELGEAWDGGKLHLPLHVDLNGEPFGRANAGI 256
Query: 62 DMLFKTGDLISYISQHMTLEPYDLILTG 89
DM F LI + ++ L +I +G
Sbjct: 257 DMTFDFPQLIVHAARTRPLSAGTIIGSG 284
>1hyo_A Fumarylacetoacetate hydrolase; beta-sandwich roll; HET: HBU; 1.30A
{Mus musculus} SCOP: b.34.8.1 d.177.1.1 PDB: 1qcn_A
2hzy_A* 1qco_A 1qqj_A
Length = 421
Score = 40.5 bits (94), Expect = 3e-05
Identities = 21/105 (20%), Positives = 34/105 (32%), Gaps = 28/105 (26%)
Query: 13 HGLPWTVGKSFDT-----ACPVSDFIP----------------EHEIKDPDDVPLWLKVN 51
L +GKSF T P+ +P H D+ L + +
Sbjct: 247 VPLGPFLGKSFGTTISPWVVPMDALMPFVVPNPKQDPKPLPYLCHSQPYTFDINLSVSLK 306
Query: 52 GELR------QKSTTGDMLFKTGDLISYIS-QHMTLEPYDLILTG 89
GE +S M + +++ S L P DL+ +G
Sbjct: 307 GEGMSQAATICRSNFKHMYWTMLQQLTHHSVNGCNLRPGDLLASG 351
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii}
SCOP: c.124.1.5
Length = 276
Score = 29.5 bits (67), Expect = 0.14
Identities = 6/41 (14%), Positives = 12/41 (29%), Gaps = 3/41 (7%)
Query: 10 AREHGLPWTV---GKSFDTACPVSDFIPEHEIKDPDDVPLW 47
E+ +P+ V F D + +V +
Sbjct: 207 CHENAIPFYVAAETYKFHPTLKSGDVMLMERDLIRGNVRIR 247
>3u7v_A Beta-galactosidase; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, TIM barrel,
glyco_hydro_42; HET: MSE; 1.80A {Caulobacter crescentus}
Length = 552
Score = 27.3 bits (60), Expect = 0.85
Identities = 16/91 (17%), Positives = 25/91 (27%), Gaps = 4/91 (4%)
Query: 8 KHAREHGLPWTVGKSFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKT 67
+ ARE + + + PE D P +K +GE R S +
Sbjct: 116 EQARERKVRLVLLWFGTWKNSSPSYAPEWVKLDDKRFPRLIKDDGE-RSYSMSPLAKSTL 174
Query: 68 GDLISYISQHMTLEPYDLILTGKAGFILMFQ 98
MT ++M Q
Sbjct: 175 DADRKAFVALMTHL---KAKDAAQKTVIMVQ 202
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD
UDP; 2.00A {Plesiomonas shigelloides} PDB: 3ru9_A*
3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Length = 351
Score = 27.2 bits (61), Expect = 0.98
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 71 ISYISQHMTLEPYDLILTGKAGFI 94
I+Q + P ++TG AGFI
Sbjct: 14 YEEITQQLIFSPKTWLITGVAGFI 37
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD
DATA with FBAR, structural genomics, PSI; 1.80A
{Mycobacterium tuberculosis}
Length = 148
Score = 26.2 bits (57), Expect = 1.6
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 11 REHGLPWTVGKSFD 24
R GLPW G+S
Sbjct: 131 RAVGLPWRQGRSHH 144
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.5 bits (57), Expect = 1.8
Identities = 4/22 (18%), Positives = 8/22 (36%), Gaps = 3/22 (13%)
Query: 35 EHEIK--DPDDVPLWLKVNGEL 54
+ +K D P L + +
Sbjct: 26 QASLKLYADDSAPA-LAIKATM 46
>1r6w_A OSB synthase, O-succinylbenzoate synthase, OSBS; enolase
superfamily, TIM barrel, capping alpha+beta domain,
lyase; HET: 164; 1.62A {Escherichia coli} SCOP: c.1.11.2
d.54.1.1 PDB: 1fhv_A* 1fhu_A 2ofj_A 3gc2_A*
Length = 322
Score = 26.2 bits (58), Expect = 2.2
Identities = 4/21 (19%), Positives = 9/21 (42%)
Query: 6 LQKHAREHGLPWTVGKSFDTA 26
+ A GL + S +++
Sbjct: 250 QVQAAHALGLTAVISSSIESS 270
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.4 bits (57), Expect = 2.4
Identities = 20/100 (20%), Positives = 33/100 (33%), Gaps = 19/100 (19%)
Query: 1 MLFL---FLQKHAREHGLPWT-VGKSFDTACPVSDFIP-EHEIKDPDDVPLWLKVNGELR 55
M+FL FL++ R W G +T + + I D D R
Sbjct: 495 MVFLDFRFLEQKIRHDSTAWNASGSILNT---LQQLKFYKPYICDNDPKY--------ER 543
Query: 56 QKSTTGDMLFKTGDLISYISQHMTLEPYDLILTGKAGFIL 95
+ D L K + + S++ L + L + I
Sbjct: 544 LVNAILDFLPKIEENL-ICSKYTDL--LRIALMAEDEAIF 580
>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus
musculus} PDB: 3t59_A*
Length = 519
Score = 25.7 bits (55), Expect = 3.5
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 6/38 (15%)
Query: 34 PEHEIKDPDDVPLWL-----KVNGELRQKSTTGDMLFK 66
H+++ P + LWL +VN L + + D F
Sbjct: 435 SMHQVRSPSNAILWLWTSHNRVNARL-SGALSEDPHFP 471
>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK,
UDP, N-acetylglucosamine, N- acetylgalactosamine,
UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas
aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*
Length = 352
Score = 25.3 bits (56), Expect = 3.9
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 74 ISQHMTLEPYDLILTGKAGFI 94
+ + + +P ++TG AGFI
Sbjct: 19 LRKELPAQPKVWLITGVAGFI 39
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer,
oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces
cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A*
1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A*
1kbj_A* 1qcw_A* 3ks0_A*
Length = 511
Score = 25.4 bits (56), Expect = 4.4
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 7/33 (21%)
Query: 6 LQKHAREHGLPWTV--GKSFDTACPVSDFIPEH 36
+ KH + W V G +D ++ F+P H
Sbjct: 16 VAKHNKPDDC-WVVINGYVYD----LTRFLPNH 43
>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR
genomics, joint center for structural genomics, JCSG,
prote structure initiative; HET: MSE; 2.55A
{Mesorhizobium loti}
Length = 301
Score = 25.1 bits (54), Expect = 4.8
Identities = 11/82 (13%), Positives = 27/82 (32%), Gaps = 5/82 (6%)
Query: 4 LFLQKHAREHGL-PWTVGKSFDTACPVSDFIPEHEIKDPDDVPLWLKVNGE----LRQKS 58
+ A + G+ P + T V+ +I + P+ R+
Sbjct: 59 AVAAREAAKAGVSPEVLHVDPATGVMVTRYIAGAQTMSPEKFKTRPGSPARAGEAFRKLH 118
Query: 59 TTGDMLFKTGDLISYISQHMTL 80
+G + +L + I ++ +
Sbjct: 119 GSGAVFPFRFELFAMIDDYLKV 140
>3caw_A O-succinylbenzoate synthase; structural genomics, PSI-2, NYSGXRC,
target 9462A, protein structure initiative; 1.87A
{Bdellovibrio bacteriovorus HD100}
Length = 330
Score = 24.8 bits (54), Expect = 6.1
Identities = 3/19 (15%), Positives = 5/19 (26%)
Query: 8 KHAREHGLPWTVGKSFDTA 26
++ L V D
Sbjct: 239 AQCQKWNLKLAVTSYMDHP 257
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.140 0.438
Gapped
Lambda K H
0.267 0.0549 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,644,813
Number of extensions: 87811
Number of successful extensions: 290
Number of sequences better than 10.0: 1
Number of HSP's gapped: 277
Number of HSP's successfully gapped: 35
Length of query: 104
Length of database: 6,701,793
Length adjustment: 69
Effective length of query: 35
Effective length of database: 4,775,244
Effective search space: 167133540
Effective search space used: 167133540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.8 bits)