RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9188
(104 letters)
>d1sawa_ d.177.1.1 (A:) FAHD1 (Flj36880, YISKL) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 217
Score = 95.9 bits (238), Expect = 1e-26
Identities = 44/85 (51%), Positives = 60/85 (70%)
Query: 5 FLQKHAREHGLPWTVGKSFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDML 64
+Q ++ GLPWT+ KSF +CPVS F+P+ +I DP + LWLKVNGELRQ+ T M+
Sbjct: 100 DVQDECKKKGLPWTLAKSFTASCPVSAFVPKEKIPDPHKLKLWLKVNGELRQEGETSSMI 159
Query: 65 FKTGDLISYISQHMTLEPYDLILTG 89
F +ISY+S+ +TLE D+ILTG
Sbjct: 160 FSIPYIISYVSKIITLEEGDIILTG 184
>d1nkqa_ d.177.1.1 (A:) Hypothetical protein Ynl168c {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 257
Score = 69.1 bits (168), Expect = 3e-16
Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Query: 6 LQKHAREHGLPWTVGKSFDTACPVSDFIPEHEIKD-----PDDVPLWLKVNGELRQKSTT 60
+Q A++ GLPWT+ K FDT P+S + + D + VNG+LRQ T
Sbjct: 126 VQDEAKKKGLPWTISKGFDTFMPISAIVSREKFSSYKSNLQDIFRVKCSVNGQLRQDGGT 185
Query: 61 GDMLFKTGDLISYISQHMTLEPYDLILTG 89
ML ++ +IS ++LEP D+ILTG
Sbjct: 186 NLMLHPLHKILQHISTMISLEPGDIILTG 214
>d1nr9a_ d.177.1.1 (A:) Putative isomerase YcgM {Escherichia coli
[TaxId: 562]}
Length = 221
Score = 63.7 bits (154), Expect = 2e-14
Identities = 37/84 (44%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 7 QKHAREHGLPWTVGKSFDTACPVSDFI-PEHEIKDPDDVPLWLKVNGELRQKSTTGDMLF 65
Q ++ G PW K+FD +CP+S FI DP + L L VNGE RQ+ TT DM+
Sbjct: 109 QGKMKKAGQPWEKAKAFDNSCPLSGFIPAAEFTGDPQNTTLSLSVNGEQRQQGTTADMIH 168
Query: 66 KTGDLISYISQHMTLEPYDLILTG 89
K LI+Y+S+ TL+ D++LTG
Sbjct: 169 KIVPLIAYMSKFFTLKAGDVVLTG 192
>d1gtta2 d.177.1.1 (A:214-429) 4-hydroxyphenylacetate degradation
bifunctional isomerase/decarboxylase HpcE {Escherichia
coli [TaxId: 562]}
Length = 216
Score = 58.7 bits (141), Expect = 1e-12
Identities = 30/73 (41%), Positives = 42/73 (57%)
Query: 17 WTVGKSFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQ 76
V +S +P+ I DP ++ L VNGELRQ+ TT D++F LI+Y+S+
Sbjct: 109 LRVKSRDGLTPMLSTIVPKEAIPDPHNLTLRTFVNGELRQQGTTADLIFSVPFLIAYLSE 168
Query: 77 HMTLEPYDLILTG 89
MTL P D+I TG
Sbjct: 169 FMTLNPGDMIATG 181
>d1hyoa2 d.177.1.1 (A:119-416) Fumarylacetoacetate hydrolase, FAH,
C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 298
Score = 52.4 bits (125), Expect = 5e-10
Identities = 12/109 (11%), Positives = 26/109 (23%), Gaps = 30/109 (27%)
Query: 11 REHGLPWTVGKSFDTACPVSDFIP-----------------------EHEIKDPDDVPLW 47
+ +P +S ++ H D+ L
Sbjct: 123 QWEYVPLGPFLGKSFGTTISPWVVPMDALMPFVVPNPKQDPKPLPYLCHSQPYTFDINLS 182
Query: 48 L------KVNGELRQKSTTGDMLFKTGDLISYI-SQHMTLEPYDLILTG 89
+ +S M + +++ L P DL+ +G
Sbjct: 183 VSLKGEGMSQAATICRSNFKHMYWTMLQQLTHHSVNGCNLRPGDLLASG 231
>d1sv6a_ d.177.1.1 (A:) 2-keto-4-pentenoate hydratase MhpD
{Escherichia coli [TaxId: 562]}
Length = 261
Score = 43.0 bits (100), Expect = 1e-06
Identities = 11/82 (13%), Positives = 24/82 (29%), Gaps = 5/82 (6%)
Query: 13 HGLPWTVGKSFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLIS 72
+ + + D + + + N E + L +
Sbjct: 150 QFVDTVADNASCGVYVIGGPAQRPAGLDLKNCAMKMTRNNEEVSSGRGSECLGHPLNAAV 209
Query: 73 YISQHM-----TLEPYDLILTG 89
++++ M L D+ILTG
Sbjct: 210 WLARKMASLGEPLRTGDIILTG 231
>d1gtta1 d.177.1.1 (A:1-213) 4-hydroxyphenylacetate degradation
bifunctional isomerase/decarboxylase HpcE {Escherichia
coli [TaxId: 562]}
Length = 213
Score = 41.9 bits (97), Expect = 2e-06
Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
Query: 6 LQKHAREHGLPWTVGKSFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLF 65
+ P K D CP+ + + + D++ ++ ++NG T D+
Sbjct: 95 VSLPEESFYRPAIKAKCRDGFCPIGETVALS---NVDNLTIYTEINGRPADHWNTADLQR 151
Query: 66 KTGDLISYISQHMTLEPYDLILTG 89
L+S +S+ TL P D IL G
Sbjct: 152 NAAQLLSALSEFATLNPGDAILLG 175
>d1s48a_ e.8.1.4 (A:) Viral RNA polymerase {Bovine viral diarrhea
virus [TaxId: 11099]}
Length = 588
Score = 26.4 bits (58), Expect = 0.71
Identities = 10/56 (17%), Positives = 17/56 (30%)
Query: 23 FDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQHM 78
+DT D EI+ W K + T ++ G++ Q
Sbjct: 258 WDTQVTSKDLQLIGEIQKYYYKKEWHKFIDTITDHMTEVPVITADGEVYIRNGQRG 313
>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding
protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 529
Score = 25.3 bits (55), Expect = 1.6
Identities = 16/89 (17%), Positives = 32/89 (35%), Gaps = 12/89 (13%)
Query: 4 LFLQKHAREHGLPWTVGKSFDTACPVSDFIPEHEIKD--PDDVP---LWLKVNGELRQKS 58
L L +P + +++ + I EH + + PD+ K ELR+
Sbjct: 132 LRLADVLWNSQIPLLICRTYGLVGYMRIIIKEHPVIESHPDNALEDLRLDKPFPELREHF 191
Query: 59 TTGDMLFKTGDLISYISQHMTLEPYDLIL 87
+ D+ S+ P+ +I+
Sbjct: 192 QSYDLDHMEKKDHSHT-------PWIVII 213
>d1y6ia1 a.118.1.22 (A:1-82) Mg-chelatase cofactor Gun4
{Synechocystis sp. pcc 6803 [TaxId: 1148]}
Length = 82
Score = 24.4 bits (53), Expect = 1.8
Identities = 4/19 (21%), Positives = 7/19 (36%)
Query: 5 FLQKHAREHGLPWTVGKSF 23
+L K+ VG +
Sbjct: 41 YLAKNVPLEKPVLAVGNVY 59
>d1mbma_ b.47.1.3 (A:) NSP4 proteinase {Equine arteritis virus, EAV
[TaxId: 11047]}
Length = 198
Score = 23.3 bits (50), Expect = 6.5
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 28 PVSDFIPEHEIKDPDDVP 45
+ IP++ I D D VP
Sbjct: 167 SIPKDIPDNIIADVDAVP 184
>d1j20a2 d.210.1.1 (A:171-395) Argininosuccinate synthetase,
C-terminal domain {Thermus thermophilus [TaxId: 274]}
Length = 225
Score = 23.3 bits (50), Expect = 8.0
Identities = 7/66 (10%), Positives = 18/66 (27%), Gaps = 2/66 (3%)
Query: 41 PDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQHMTLEPYDLILTGKAG--FILMFQ 98
P + + E ++ F GD ++ + ++ L G +
Sbjct: 26 PKGMFRMTQDPEEAPDAPEYVEVEFFEGDPVAVNGERLSPAALLQRLNEIGGRHGVGRVD 85
Query: 99 QSPHSV 104
+
Sbjct: 86 IVENRF 91
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.140 0.438
Gapped
Lambda K H
0.267 0.0612 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 404,413
Number of extensions: 16961
Number of successful extensions: 54
Number of sequences better than 10.0: 1
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 20
Length of query: 104
Length of database: 2,407,596
Length adjustment: 65
Effective length of query: 39
Effective length of database: 1,515,146
Effective search space: 59090694
Effective search space used: 59090694
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.1 bits)