BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9193
(128 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FSO|A Chain A, Crystal Structure Of Truncated Human Rhogdi Quadruple
Mutant
Length = 139
Score = 89.4 bits (220), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 40/67 (59%), Positives = 47/67 (70%)
Query: 62 AVDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFE 121
A+D +MVGSY P E + TP E+AP GMLARG YS++S FTDDD +HL WEW F
Sbjct: 73 AIDATDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNFT 132
Query: 122 IKKSWKD 128
IKK WKD
Sbjct: 133 IKKDWKD 139
Score = 65.9 bits (159), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 35/49 (71%)
Query: 3 HMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKW 51
+MVGSY P E + TP E+AP GMLARG YS++S FTDDD +HL W
Sbjct: 79 YMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSW 127
>pdb|1CC0|E Chain E, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|F Chain F, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1HH4|D Chain D, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|E Chain E, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 204
Score = 87.8 bits (216), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 39/66 (59%), Positives = 46/66 (69%)
Query: 63 VDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFEI 122
+DK +MVGSY P E + TP E+AP GMLARG YS++S FTDDD +HL WEW I
Sbjct: 139 IDKTDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTI 198
Query: 123 KKSWKD 128
KK WKD
Sbjct: 199 KKDWKD 204
Score = 65.9 bits (159), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 35/49 (71%)
Query: 3 HMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKW 51
+MVGSY P E + TP E+AP GMLARG YS++S FTDDD +HL W
Sbjct: 144 YMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSW 192
>pdb|1FT0|A Chain A, Crystal Structure Of Truncated Human Rhogdi K113a Mutant
pdb|1FT0|B Chain B, Crystal Structure Of Truncated Human Rhogdi K113a Mutant
Length = 139
Score = 87.4 bits (215), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 39/66 (59%), Positives = 46/66 (69%)
Query: 63 VDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFEI 122
+DK +MVGSY P E + TP E+AP GMLARG YS++S FTDDD +HL WEW I
Sbjct: 74 IDKTDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTI 133
Query: 123 KKSWKD 128
KK WKD
Sbjct: 134 KKDWKD 139
Score = 65.9 bits (159), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 35/49 (71%)
Query: 3 HMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKW 51
+MVGSY P E + TP E+AP GMLARG YS++S FTDDD +HL W
Sbjct: 79 YMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSW 127
>pdb|1FST|A Chain A, Crystal Structure Of Truncated Human Rhogdi Triple Mutant
pdb|1FST|B Chain B, Crystal Structure Of Truncated Human Rhogdi Triple Mutant
Length = 182
Score = 87.0 bits (214), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 39/67 (58%), Positives = 46/67 (68%)
Query: 62 AVDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFE 121
A+D +MVGSY P E + TP E+AP GMLARG YS++S FTDDD +HL WEW
Sbjct: 116 AIDATDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLT 175
Query: 122 IKKSWKD 128
IKK WKD
Sbjct: 176 IKKDWKD 182
Score = 65.9 bits (159), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 35/49 (71%)
Query: 3 HMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKW 51
+MVGSY P E + TP E+AP GMLARG YS++S FTDDD +HL W
Sbjct: 122 YMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSW 170
>pdb|4F38|B Chain B, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 204
Score = 86.7 bits (213), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 38/66 (57%), Positives = 46/66 (69%)
Query: 63 VDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFEI 122
+DK +MVGSY P E + TP E+AP GMLARG Y+++S FTDDD +HL WEW I
Sbjct: 139 IDKTDYMVGSYGPRAEEYEFLTPMEEAPKGMLARGSYNIKSRFTDDDRTDHLSWEWNLTI 198
Query: 123 KKSWKD 128
KK WKD
Sbjct: 199 KKEWKD 204
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 35/49 (71%)
Query: 3 HMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKW 51
+MVGSY P E + TP E+AP GMLARG Y+++S FTDDD +HL W
Sbjct: 144 YMVGSYGPRAEEYEFLTPMEEAPKGMLARGSYNIKSRFTDDDRTDHLSW 192
>pdb|1DOA|B Chain B, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 219
Score = 86.7 bits (213), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 38/66 (57%), Positives = 46/66 (69%)
Query: 63 VDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFEI 122
+DK +MVGSY P E + TP E+AP GMLARG Y+++S FTDDD +HL WEW I
Sbjct: 154 IDKTDYMVGSYGPRAEEYEFLTPMEEAPKGMLARGSYNIKSRFTDDDRTDHLSWEWNLTI 213
Query: 123 KKSWKD 128
KK WKD
Sbjct: 214 KKEWKD 219
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 35/49 (71%)
Query: 3 HMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKW 51
+MVGSY P E + TP E+AP GMLARG Y+++S FTDDD +HL W
Sbjct: 159 YMVGSYGPRAEEYEFLTPMEEAPKGMLARGSYNIKSRFTDDDRTDHLSW 207
>pdb|1AJW|A Chain A, Structure Of Rhogdi: A C-Terminal Binding Domain Targets
An N-Terminal Inhibitory Peptide To Gtpases, Nmr, 20
Structures
pdb|1GDF|A Chain A, Structure Of Rhogdi: A C-Terminal Binding Domain Targets
An N-Terminal Inhibitory Peptide To Gtpases, Nmr,
Minimized Average Structure
Length = 145
Score = 86.3 bits (212), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 38/66 (57%), Positives = 46/66 (69%)
Query: 63 VDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFEI 122
+DK +MVGSY P E + TP E+AP GMLARG Y+++S FTDDD +HL WEW I
Sbjct: 80 IDKTDYMVGSYGPRAEEYEFLTPMEEAPKGMLARGSYNIKSRFTDDDRTDHLSWEWNLTI 139
Query: 123 KKSWKD 128
KK WKD
Sbjct: 140 KKEWKD 145
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 35/49 (71%)
Query: 3 HMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKW 51
+MVGSY P E + TP E+AP GMLARG Y+++S FTDDD +HL W
Sbjct: 85 YMVGSYGPRAEEYEFLTPMEEAPKGMLARGSYNIKSRFTDDDRTDHLSW 133
>pdb|1KMT|A Chain A, Crystal Structure Of Rhogdi Glu(154,155)ala Mutant
pdb|1KMT|B Chain B, Crystal Structure Of Rhogdi Glu(154,155)ala Mutant
Length = 141
Score = 85.9 bits (211), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 38/66 (57%), Positives = 45/66 (68%)
Query: 63 VDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFEI 122
+DK +MVGSY P + TP E+AP GMLARG YS++S FTDDD +HL WEW I
Sbjct: 76 IDKTDYMVGSYGPRAAAYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTI 135
Query: 123 KKSWKD 128
KK WKD
Sbjct: 136 KKDWKD 141
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 34/49 (69%)
Query: 3 HMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKW 51
+MVGSY P + TP E+AP GMLARG YS++S FTDDD +HL W
Sbjct: 81 YMVGSYGPRAAAYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSW 129
>pdb|1QVY|A Chain A, Crystal Structure Of Rhogdi K(199,200)r Double Mutant
pdb|1QVY|B Chain B, Crystal Structure Of Rhogdi K(199,200)r Double Mutant
pdb|1QVY|C Chain C, Crystal Structure Of Rhogdi K(199,200)r Double Mutant
pdb|1QVY|D Chain D, Crystal Structure Of Rhogdi K(199,200)r Double Mutant
Length = 139
Score = 85.9 bits (211), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 37/66 (56%), Positives = 46/66 (69%)
Query: 63 VDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFEI 122
+DK +MVGSY P E + TP E+AP GMLARG YS++S FTDDD +HL WEW I
Sbjct: 74 IDKTDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTI 133
Query: 123 KKSWKD 128
++ WKD
Sbjct: 134 RRDWKD 139
Score = 65.9 bits (159), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 35/49 (71%)
Query: 3 HMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKW 51
+MVGSY P E + TP E+AP GMLARG YS++S FTDDD +HL W
Sbjct: 79 YMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSW 127
>pdb|2JHZ|A Chain A, Crystal Structure Of Rhogdi E155s, E157s Mutant
pdb|2JHZ|B Chain B, Crystal Structure Of Rhogdi E155s, E157s Mutant
Length = 138
Score = 85.5 bits (210), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 38/64 (59%), Positives = 45/64 (70%)
Query: 63 VDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFEI 122
+DK +MVGSY P E S+ TP E+AP GMLARG YS++S FTDDD +HL WEW I
Sbjct: 75 IDKTDYMVGSYGPRAESYSFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTI 134
Query: 123 KKSW 126
KK W
Sbjct: 135 KKDW 138
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/49 (61%), Positives = 36/49 (73%)
Query: 3 HMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKW 51
+MVGSY P E S+ TP E+AP GMLARG YS++S FTDDD +HL W
Sbjct: 80 YMVGSYGPRAESYSFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSW 128
>pdb|1FT3|A Chain A, Crystal Structure Of Truncated Rhogdi K141a Mutant
pdb|1FT3|B Chain B, Crystal Structure Of Truncated Rhogdi K141a Mutant
Length = 139
Score = 85.1 bits (209), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 38/66 (57%), Positives = 45/66 (68%)
Query: 63 VDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFEI 122
+D +MVGSY P E + TP E+AP GMLARG YS++S FTDDD +HL WEW I
Sbjct: 74 IDATDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTI 133
Query: 123 KKSWKD 128
KK WKD
Sbjct: 134 KKDWKD 139
Score = 65.9 bits (159), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 35/49 (71%)
Query: 3 HMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKW 51
+MVGSY P E + TP E+AP GMLARG YS++S FTDDD +HL W
Sbjct: 79 YMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSW 127
>pdb|2JHW|A Chain A, Crystal Structure Of Rhogdi E155a, E157a Mutant
pdb|2JHW|B Chain B, Crystal Structure Of Rhogdi E155a, E157a Mutant
Length = 138
Score = 85.1 bits (209), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 37/64 (57%), Positives = 45/64 (70%)
Query: 63 VDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFEI 122
+DK +MVGSY P E ++ TP E+AP GMLARG YS++S FTDDD +HL WEW I
Sbjct: 75 IDKTDYMVGSYGPRAEAYAFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTI 134
Query: 123 KKSW 126
KK W
Sbjct: 135 KKDW 138
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 36/49 (73%)
Query: 3 HMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKW 51
+MVGSY P E ++ TP E+AP GMLARG YS++S FTDDD +HL W
Sbjct: 80 YMVGSYGPRAEAYAFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSW 128
>pdb|2BXW|A Chain A, Crystal Structure Of Rhogdi Lys(135,138,141)tyr Mutant
pdb|2BXW|B Chain B, Crystal Structure Of Rhogdi Lys(135,138,141)tyr Mutant
Length = 141
Score = 84.7 bits (208), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 38/66 (57%), Positives = 45/66 (68%)
Query: 63 VDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFEI 122
+D +MVGSY P E + TP E+AP GMLARG YS++S FTDDD +HL WEW I
Sbjct: 76 IDYTDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTI 135
Query: 123 KKSWKD 128
KK WKD
Sbjct: 136 KKDWKD 141
Score = 65.9 bits (159), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 35/49 (71%)
Query: 3 HMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKW 51
+MVGSY P E + TP E+AP GMLARG YS++S FTDDD +HL W
Sbjct: 81 YMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSW 129
>pdb|2JHX|A Chain A, Crystal Structure Of Rhogdi E155h, E157h Mutant
pdb|2JHX|B Chain B, Crystal Structure Of Rhogdi E155h, E157h Mutant
pdb|2JHY|A Chain A, Crystal Structure Of Rhogdi E155h, E157h Mutant
Length = 138
Score = 83.2 bits (204), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 37/64 (57%), Positives = 44/64 (68%)
Query: 63 VDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFEI 122
+DK +MVGSY P E + TP E+AP GMLARG YS++S FTDDD +HL WEW I
Sbjct: 75 IDKTDYMVGSYGPRAEHYHFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTI 134
Query: 123 KKSW 126
KK W
Sbjct: 135 KKDW 138
Score = 65.5 bits (158), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 35/49 (71%)
Query: 3 HMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKW 51
+MVGSY P E + TP E+AP GMLARG YS++S FTDDD +HL W
Sbjct: 80 YMVGSYGPRAEHYHFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSW 128
>pdb|2JHU|A Chain A, Crystal Structure Of Rhogdi E154a,E155a Mutant
pdb|2JHU|B Chain B, Crystal Structure Of Rhogdi E154a,E155a Mutant
pdb|2JHV|A Chain A, Crystal Structure Of Rhogdi E154a,e155a Mutant
pdb|2JHV|B Chain B, Crystal Structure Of Rhogdi E154a,e155a Mutant
pdb|2JHV|C Chain C, Crystal Structure Of Rhogdi E154a,e155a Mutant
pdb|2JHV|D Chain D, Crystal Structure Of Rhogdi E154a,e155a Mutant
pdb|2JHV|E Chain E, Crystal Structure Of Rhogdi E154a,e155a Mutant
pdb|2JHV|F Chain F, Crystal Structure Of Rhogdi E154a,e155a Mutant
Length = 138
Score = 82.0 bits (201), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 36/64 (56%), Positives = 43/64 (67%)
Query: 63 VDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFEI 122
+DK +MVGSY P + TP E+AP GMLARG YS++S FTDDD +HL WEW I
Sbjct: 75 IDKTDYMVGSYGPRAAAYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTI 134
Query: 123 KKSW 126
KK W
Sbjct: 135 KKDW 138
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 34/49 (69%)
Query: 3 HMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKW 51
+MVGSY P + TP E+AP GMLARG YS++S FTDDD +HL W
Sbjct: 80 YMVGSYGPRAAAYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSW 128
>pdb|2JHT|A Chain A, Crystal Structure Of Rhogdi K135t,K138t,K141t Mutant
pdb|2JHT|B Chain B, Crystal Structure Of Rhogdi K135t,K138t,K141t Mutant
pdb|2JHT|C Chain C, Crystal Structure Of Rhogdi K135t,K138t,K141t Mutant
pdb|2JHT|D Chain D, Crystal Structure Of Rhogdi K135t,K138t,K141t Mutant
Length = 138
Score = 81.3 bits (199), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 43/65 (66%)
Query: 62 AVDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFE 121
+D +MVGSY P E + TP E+AP GMLARG YS++S FTDDD +HL WEW
Sbjct: 74 TIDTTDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLT 133
Query: 122 IKKSW 126
IKK W
Sbjct: 134 IKKDW 138
Score = 65.9 bits (159), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 35/49 (71%)
Query: 3 HMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKW 51
+MVGSY P E + TP E+AP GMLARG YS++S FTDDD +HL W
Sbjct: 80 YMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSW 128
>pdb|2JHS|A Chain A, Crystal Structure Of Rhogdi K135h,K138h,K141h Mutant
Length = 138
Score = 81.3 bits (199), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 36/64 (56%), Positives = 43/64 (67%)
Query: 63 VDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFEI 122
+D +MVGSY P E + TP E+AP GMLARG YS++S FTDDD +HL WEW I
Sbjct: 75 IDHTDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTI 134
Query: 123 KKSW 126
KK W
Sbjct: 135 KKDW 138
Score = 65.5 bits (158), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 35/49 (71%)
Query: 3 HMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKW 51
+MVGSY P E + TP E+AP GMLARG YS++S FTDDD +HL W
Sbjct: 80 YMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSW 128
>pdb|2JI0|A Chain A, Crystal Structure Of Rhogdi K138y, K141y Mutant
Length = 138
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 36/64 (56%), Positives = 43/64 (67%)
Query: 63 VDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFEI 122
+D +MVGSY P E + TP E+AP GMLARG YS++S FTDDD +HL WEW I
Sbjct: 75 IDYTDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTI 134
Query: 123 KKSW 126
KK W
Sbjct: 135 KKDW 138
Score = 65.9 bits (159), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 35/49 (71%)
Query: 3 HMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKW 51
+MVGSY P E + TP E+AP GMLARG YS++S FTDDD +HL W
Sbjct: 80 YMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSW 128
>pdb|1DS6|B Chain B, Crystal Structure Of A Rac-Rhogdi Complex
Length = 180
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 37/64 (57%), Positives = 41/64 (64%)
Query: 63 VDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFEI 122
VDK MVGSY P E + TP E+AP GMLARG Y +S FTDDD +HL WEW I
Sbjct: 115 VDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFTDDDKQDHLSWEWNLSI 174
Query: 123 KKSW 126
KK W
Sbjct: 175 KKEW 178
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/48 (58%), Positives = 32/48 (66%)
Query: 4 MVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKW 51
MVGSY P E + TP E+AP GMLARG Y +S FTDDD +HL W
Sbjct: 121 MVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFTDDDKQDHLSW 168
>pdb|1RHO|A Chain A, Structure Of Rho Guanine Nucleotide Dissociation Inhibitor
pdb|1RHO|B Chain B, Structure Of Rho Guanine Nucleotide Dissociation Inhibitor
pdb|1RHO|C Chain C, Structure Of Rho Guanine Nucleotide Dissociation Inhibitor
Length = 145
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 43/65 (66%)
Query: 63 VDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFEI 122
+DK + VGSY P E + TP E+AP G LARG YS++S FTDDD +HL WEW I
Sbjct: 81 IDKTDYXVGSYGPRAEEYEFLTPVEEAPKGXLARGSYSIKSRFTDDDKTDHLSWEWNLTI 140
Query: 123 KKSWK 127
KK WK
Sbjct: 141 KKDWK 145
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 33/49 (67%)
Query: 3 HMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKW 51
+ VGSY P E + TP E+AP G LARG YS++S FTDDD +HL W
Sbjct: 86 YXVGSYGPRAEEYEFLTPVEEAPKGXLARGSYSIKSRFTDDDKTDHLSW 134
>pdb|2Q66|A Chain A, Structure Of Yeast Poly(A) Polymerase With Atp And
Oligo(A)
Length = 525
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 40 FTDDDDAEHLKWVTLILLPLRFAVDKMVHMVG---SYPPSLELQ-SYTTPPED 88
+T D +HLKW L+ +R V K+ + G ++P + + SY P ED
Sbjct: 363 YTRGSDEQHLKWSGLVESKVRLLVMKLEVLAGIKIAHPFTKPFESSYCCPTED 415
>pdb|1FA0|A Chain A, Structure Of Yeast Poly(A) Polymerase Bound To Manganate
And 3'-Datp
pdb|1FA0|B Chain B, Structure Of Yeast Poly(A) Polymerase Bound To Manganate
And 3'-Datp
pdb|3C66|A Chain A, Yeast Poly(A) Polymerase In Complex With Fip1 Residues
80-105
pdb|3C66|B Chain B, Yeast Poly(A) Polymerase In Complex With Fip1 Residues
80-105
Length = 537
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 40 FTDDDDAEHLKWVTLILLPLRFAVDKMVHMVG---SYPPSLELQ-SYTTPPED 88
+T D +HLKW L+ +R V K+ + G ++P + + SY P ED
Sbjct: 367 YTRGSDEQHLKWSGLVESKVRLLVMKLEVLAGIKIAHPFTKPFESSYCCPTED 419
>pdb|2O1P|A Chain A, Structure Of Yeast Poly(A) Polymerase In A Somewhat Closed
State
pdb|2O1P|B Chain B, Structure Of Yeast Poly(A) Polymerase In A Somewhat Closed
State
Length = 546
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 40 FTDDDDAEHLKWVTLILLPLRFAVDKMVHMVG---SYPPSLELQ-SYTTPPED 88
+T D +HLKW L+ +R V K+ + G ++P + + SY P ED
Sbjct: 367 YTRGSDEQHLKWSGLVESKVRLLVMKLEVLAGIKIAHPFTKPFESSYCCPTED 419
>pdb|2HHP|A Chain A, Structure Of Yeast Poly(A) Polymerase In A Closed
Conformation
Length = 530
Score = 27.3 bits (59), Expect = 2.0, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 40 FTDDDDAEHLKWVTLILLPLRFAVDKMVHMVG---SYPPSLELQ-SYTTPPED 88
+T D +HLKW L+ +R V K+ + G ++P + + SY P ED
Sbjct: 367 YTRGSDEQHLKWSGLVESKVRLLVMKLEVLAGIKIAHPFTKPFESSYCCPTED 419
>pdb|3PXG|A Chain A, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|B Chain B, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|C Chain C, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|D Chain D, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|E Chain E, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|F Chain F, Structure Of Meca121 And Clpc1-485 Complex
Length = 468
Score = 27.3 bits (59), Expect = 2.5, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 9/78 (11%)
Query: 60 RFAVDKMVHMVGSYPPSLELQSYTTPP-----EDAPSGMLARGVYSVQSLFTDD----DD 110
RF DK + ++ + L+S+TTPP E + +VQS + D
Sbjct: 368 RFLPDKAIDLIDEAGSKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRD 427
Query: 111 AEHLKWEWTFEIKKSWKD 128
E E + KKSWK+
Sbjct: 428 TEQRLREQVEDTKKSWKE 445
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 27.3 bits (59), Expect = 2.6, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 9/78 (11%)
Query: 60 RFAVDKMVHMVGSYPPSLELQSYTTPP-----EDAPSGMLARGVYSVQSLFTDD----DD 110
RF DK + ++ + L+S+TTPP E + +VQS + D
Sbjct: 368 RFLPDKAIDLIDEAGSKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRD 427
Query: 111 AEHLKWEWTFEIKKSWKD 128
E E + KKSWK+
Sbjct: 428 TEQRLREQVEDTKKSWKE 445
>pdb|3OC5|A Chain A, Crystal Structure Of The Vibrio Cholerae Secreted
Colonization Factor Tcpf
Length = 318
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 12/87 (13%)
Query: 33 VYSVQSLFTDDDDAEHLKWVTLILLPLRFAVDKMVHMVG------------SYPPSLELQ 80
VY+ + TD +EHL++ L + + + D + + V +YP +
Sbjct: 11 VYATSNEATDSRGSEHLRYPYLECIKIGMSRDYLENCVKVSFPTSQDMFYDAYPSTESDG 70
Query: 81 SYTTPPEDAPSGMLARGVYSVQSLFTD 107
+ T ED + +LA S+Q L+ D
Sbjct: 71 AKTRTKEDFSARLLAGDYDSLQKLYID 97
>pdb|1GNL|A Chain A, Hybrid Cluster Protein From Desulfovibrio Desulfuricans
X-Ray Structure At 1.25a Resolution Using Synchrotron
Radiation At A Wavelength Of 0.933a
pdb|1GNL|B Chain B, Hybrid Cluster Protein From Desulfovibrio Desulfuricans
X-Ray Structure At 1.25a Resolution Using Synchrotron
Radiation At A Wavelength Of 0.933a
pdb|1OA0|A Chain A, Reduced Hybrid Cluster Protein From Desulfovibrio
Desulfuricans X-Ray Structure At 1.25a Resolution
pdb|1OA0|B Chain B, Reduced Hybrid Cluster Protein From Desulfovibrio
Desulfuricans X-Ray Structure At 1.25a Resolution
pdb|1UPX|A Chain A, The Crystal Structure Of The Hybrid Cluster Protein From
Desulfovibrio Desulfuricans Containing Molecules In The
Oxidized And Reduced States.
pdb|1UPX|B Chain B, The Crystal Structure Of The Hybrid Cluster Protein From
Desulfovibrio Desulfuricans Containing Molecules In The
Oxidized And Reduced States
Length = 544
Score = 26.2 bits (56), Expect = 5.9, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 26 SGMLARGVYSVQSLFTDDDDAEHLKWVTLILLPLRFAVDKMVHMVGSYPPSLE 78
S MLA+ +V + T DDD L+W+ L A K ++G + SL+
Sbjct: 120 SAMLAKA-GTVGVMATTDDDVRSLRWLITFGLKGMAAYAKHADVLGKHENSLD 171
>pdb|1GN9|A Chain A, Hybrid Cluster Protein From Desulfovibrio Desulfuricans
Atcc 27774 X-Ray Structure At 2.6a Resolution Using
Synchrotron Radiation At A Wavelength Of 1.722a
pdb|1GN9|B Chain B, Hybrid Cluster Protein From Desulfovibrio Desulfuricans
Atcc 27774 X-Ray Structure At 2.6a Resolution Using
Synchrotron Radiation At A Wavelength Of 1.722a
Length = 544
Score = 25.8 bits (55), Expect = 6.0, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 26 SGMLARGVYSVQSLFTDDDDAEHLKWVTLILLPLRFAVDKMVHMVGSYPPSLE 78
S MLA+ +V + T DDD L+W+ L A K ++G + SL+
Sbjct: 120 SAMLAKA-GTVGVMATTDDDVRSLRWLITFGLKGMAAYAKHADVLGKHENSLD 171
>pdb|3RKK|A Chain A, Crystal Structure Of New Delhi Metallo-Beta-Lactamase-1
From Klebsiella Pneumoniae
pdb|3RKK|B Chain B, Crystal Structure Of New Delhi Metallo-Beta-Lactamase-1
From Klebsiella Pneumoniae
pdb|3SBL|A Chain A, Crystal Structure Of New Delhi Metal-Beta-Lactamase-1 From
Klebsiella Pneumoniae
pdb|3SRX|A Chain A, New Delhi Metallo-Beta-Lactamase-1 Complexed With Cd
pdb|3SRX|B Chain B, New Delhi Metallo-Beta-Lactamase-1 Complexed With Cd
pdb|3SFP|A Chain A, Crystal Structure Of The Mono-Zinc-Boundform Of New Delhi
Metallo- Beta-Lactamase-1 From Klebsiella Pneumoniae
pdb|3SFP|B Chain B, Crystal Structure Of The Mono-Zinc-Boundform Of New Delhi
Metallo- Beta-Lactamase-1 From Klebsiella Pneumoniae
pdb|3SFP|C Chain C, Crystal Structure Of The Mono-Zinc-Boundform Of New Delhi
Metallo- Beta-Lactamase-1 From Klebsiella Pneumoniae
pdb|3SFP|D Chain D, Crystal Structure Of The Mono-Zinc-Boundform Of New Delhi
Metallo- Beta-Lactamase-1 From Klebsiella Pneumoniae
Length = 237
Score = 25.4 bits (54), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 11/83 (13%)
Query: 24 APSGMLARG---VYSVQSLFTDDDDAEHLKWVTL-ILLPLRFAV------DKMVHMVGSY 73
A +G++ R V V + +TDD A+ L W+ I LP+ AV DKM M +
Sbjct: 41 ASNGLIVRDGGRVLVVDTAWTDDQTAQILNWIKQEINLPVALAVVTHAHQDKMGGMDALH 100
Query: 74 PPSLELQSYTTPPEDAPS-GMLA 95
+ + + AP GM+A
Sbjct: 101 AAGIATYANALSNQLAPQEGMVA 123
>pdb|3RKJ|A Chain A, Crystal Structure Of New Delhi Metallo-Beta-Lactamase-1
From Klebsiella Pnueumoniae
pdb|3RKJ|B Chain B, Crystal Structure Of New Delhi Metallo-Beta-Lactamase-1
From Klebsiella Pnueumoniae
Length = 235
Score = 25.4 bits (54), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 11/83 (13%)
Query: 24 APSGMLARG---VYSVQSLFTDDDDAEHLKWVTL-ILLPLRFAV------DKMVHMVGSY 73
A +G++ R V V + +TDD A+ L W+ I LP+ AV DKM M +
Sbjct: 39 ASNGLIVRDGGRVLVVDTAWTDDQTAQILNWIKQEINLPVALAVVTHAHQDKMGGMDALH 98
Query: 74 PPSLELQSYTTPPEDAPS-GMLA 95
+ + + AP GM+A
Sbjct: 99 AAGIATYANALSNQLAPQEGMVA 121
>pdb|4H0D|A Chain A, New Delhi Metallo-Beta-Lactamase-1 Complexed With Mn From
Klebsiella Pneumoniae
pdb|4H0D|B Chain B, New Delhi Metallo-Beta-Lactamase-1 Complexed With Mn From
Klebsiella Pneumoniae
pdb|4HL1|A Chain A, Crystal Structure Of New Delhi Metallo-Beta-Lactamase-1,
Complexed With Cd And Ampicillin
pdb|4HL1|B Chain B, Crystal Structure Of New Delhi Metallo-Beta-Lactamase-1,
Complexed With Cd And Ampicillin
pdb|4HL2|A Chain A, New Delhi Metallo-Beta-Lactamase-1 1.05 A Structure
Complexed With Hydrolyzed Ampicillin
pdb|4HL2|B Chain B, New Delhi Metallo-Beta-Lactamase-1 1.05 A Structure
Complexed With Hydrolyzed Ampicillin
pdb|4HKY|A Chain A, New Delhi Metallo-beta-lactamase-1, Complexed With Cd And
Faropenem
pdb|4HKY|B Chain B, New Delhi Metallo-beta-lactamase-1, Complexed With Cd And
Faropenem
Length = 243
Score = 25.4 bits (54), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 11/83 (13%)
Query: 24 APSGMLARG---VYSVQSLFTDDDDAEHLKWVTL-ILLPLRFAV------DKMVHMVGSY 73
A +G++ R V V + +TDD A+ L W+ I LP+ AV DKM M +
Sbjct: 47 ASNGLIVRDGGRVLVVDTAWTDDQTAQILNWIKQEINLPVALAVVTHAHQDKMGGMDALH 106
Query: 74 PPSLELQSYTTPPEDAPS-GMLA 95
+ + + AP GM+A
Sbjct: 107 AAGIATYANALSNQLAPQEGMVA 129
>pdb|3Q6X|A Chain A, Crystal Structure Of Ndm-1 In Complex With Hydrolyzed
Ampicillin
pdb|3Q6X|B Chain B, Crystal Structure Of Ndm-1 In Complex With Hydrolyzed
Ampicillin
Length = 243
Score = 25.4 bits (54), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 11/83 (13%)
Query: 24 APSGMLARG---VYSVQSLFTDDDDAEHLKWVTL-ILLPLRFAV------DKMVHMVGSY 73
A +G++ R V V + +TDD A+ L W+ I LP+ AV DKM M +
Sbjct: 47 ASNGLIVRDGGRVLVVDTAWTDDQTAQILNWIKQEINLPVALAVVTHAHQDKMGGMDALH 106
Query: 74 PPSLELQSYTTPPEDAPS-GMLA 95
+ + + AP GM+A
Sbjct: 107 AAGIATYANALSNQLAPQEGMVA 129
>pdb|4GYQ|A Chain A, Crystal Structure Of New Delhi Metallo-Beta-Lactamase-1
D223a Mutant From Klebsiella Pneumoniae
pdb|4GYQ|B Chain B, Crystal Structure Of New Delhi Metallo-Beta-Lactamase-1
D223a Mutant From Klebsiella Pneumoniae
pdb|4GYQ|C Chain C, Crystal Structure Of New Delhi Metallo-Beta-Lactamase-1
D223a Mutant From Klebsiella Pneumoniae
pdb|4GYQ|D Chain D, Crystal Structure Of New Delhi Metallo-Beta-Lactamase-1
D223a Mutant From Klebsiella Pneumoniae
Length = 243
Score = 25.4 bits (54), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 11/83 (13%)
Query: 24 APSGMLARG---VYSVQSLFTDDDDAEHLKWVTL-ILLPLRFAV------DKMVHMVGSY 73
A +G++ R V V + +TDD A+ L W+ I LP+ AV DKM M +
Sbjct: 47 ASNGLIVRDGGRVLVVDTAWTDDQTAQILNWIKQEINLPVALAVVTHAHQDKMGGMDALH 106
Query: 74 PPSLELQSYTTPPEDAPS-GMLA 95
+ + + AP GM+A
Sbjct: 107 AAGIATYANALSNQLAPQEGMVA 129
>pdb|3S0Z|A Chain A, Crystal Structure Of New Delhi Metallo-Beta-Lactamase
(Ndm-1)
pdb|3S0Z|B Chain B, Crystal Structure Of New Delhi Metallo-Beta-Lactamase
(Ndm-1)
Length = 224
Score = 25.4 bits (54), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 11/83 (13%)
Query: 24 APSGMLARG---VYSVQSLFTDDDDAEHLKWVTL-ILLPLRFAV------DKMVHMVGSY 73
A +G++ R V V + +TDD A+ L W+ I LP+ AV DKM M +
Sbjct: 28 ASNGLIVRDGGRVLVVDTAWTDDQTAQILNWIKQEINLPVALAVVTHAHQDKMGGMDALH 87
Query: 74 PPSLELQSYTTPPEDAPS-GMLA 95
+ + + AP GM+A
Sbjct: 88 AAGIATYANALSNQLAPQEGMVA 110
>pdb|1OJ7|A Chain A, Structural Genomics, Unknown Function Crystal Structure Of
E. Coli K-12 Yqhd
pdb|1OJ7|B Chain B, Structural Genomics, Unknown Function Crystal Structure Of
E. Coli K-12 Yqhd
pdb|1OJ7|C Chain C, Structural Genomics, Unknown Function Crystal Structure Of
E. Coli K-12 Yqhd
pdb|1OJ7|D Chain D, Structural Genomics, Unknown Function Crystal Structure Of
E. Coli K-12 Yqhd
Length = 408
Score = 25.4 bits (54), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 16 SYTTPPEDAPSGMLARGVYSVQSLFTDDDDAE-HLKWVTLILLPL 59
+YT PP +G++ V++V+ T DA+ H ++ ILL L
Sbjct: 201 TYTLPPRQVANGVVDAFVHTVEQYVTKPVDAKIHDRFAEGILLTL 245
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,624,496
Number of Sequences: 62578
Number of extensions: 186067
Number of successful extensions: 391
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 342
Number of HSP's gapped (non-prelim): 69
length of query: 128
length of database: 14,973,337
effective HSP length: 87
effective length of query: 41
effective length of database: 9,529,051
effective search space: 390691091
effective search space used: 390691091
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)