BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9193
(128 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q4R4J0|GDIR1_MACFA Rho GDP-dissociation inhibitor 1 OS=Macaca fascicularis GN=ARHGDIA
PE=2 SV=1
Length = 204
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 39/66 (59%), Positives = 46/66 (69%)
Query: 63 VDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFEI 122
+DK +MVGSY P E + TP E+AP GMLARG YS++S FTDDD +HL WEW I
Sbjct: 139 IDKTDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTI 198
Query: 123 KKSWKD 128
KK WKD
Sbjct: 199 KKDWKD 204
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 35/49 (71%)
Query: 3 HMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKW 51
+MVGSY P E + TP E+AP GMLARG YS++S FTDDD +HL W
Sbjct: 144 YMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSW 192
>sp|P52565|GDIR1_HUMAN Rho GDP-dissociation inhibitor 1 OS=Homo sapiens GN=ARHGDIA PE=1
SV=3
Length = 204
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 39/66 (59%), Positives = 46/66 (69%)
Query: 63 VDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFEI 122
+DK +MVGSY P E + TP E+AP GMLARG YS++S FTDDD +HL WEW I
Sbjct: 139 IDKTDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTI 198
Query: 123 KKSWKD 128
KK WKD
Sbjct: 199 KKDWKD 204
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 35/49 (71%)
Query: 3 HMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKW 51
+MVGSY P E + TP E+AP GMLARG YS++S FTDDD +HL W
Sbjct: 144 YMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSW 192
>sp|Q5XI73|GDIR1_RAT Rho GDP-dissociation inhibitor 1 OS=Rattus norvegicus GN=Arhgdia
PE=1 SV=1
Length = 204
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 38/66 (57%), Positives = 46/66 (69%)
Query: 63 VDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFEI 122
+DK +MVGSY P E + TP E+AP GMLARG Y+++S FTDDD +HL WEW I
Sbjct: 139 IDKTDYMVGSYGPRAEEYEFLTPMEEAPKGMLARGSYNIKSRFTDDDKTDHLSWEWNLTI 198
Query: 123 KKSWKD 128
KK WKD
Sbjct: 199 KKEWKD 204
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 35/49 (71%)
Query: 3 HMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKW 51
+MVGSY P E + TP E+AP GMLARG Y+++S FTDDD +HL W
Sbjct: 144 YMVGSYGPRAEEYEFLTPMEEAPKGMLARGSYNIKSRFTDDDKTDHLSW 192
>sp|Q99PT1|GDIR1_MOUSE Rho GDP-dissociation inhibitor 1 OS=Mus musculus GN=Arhgdia PE=1
SV=3
Length = 204
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 38/66 (57%), Positives = 46/66 (69%)
Query: 63 VDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFEI 122
+DK +MVGSY P E + TP E+AP GMLARG Y+++S FTDDD +HL WEW I
Sbjct: 139 IDKTDYMVGSYGPRAEEYEFLTPMEEAPKGMLARGSYNIKSRFTDDDKTDHLSWEWNLTI 198
Query: 123 KKSWKD 128
KK WKD
Sbjct: 199 KKEWKD 204
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 35/49 (71%)
Query: 3 HMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKW 51
+MVGSY P E + TP E+AP GMLARG Y+++S FTDDD +HL W
Sbjct: 144 YMVGSYGPRAEEYEFLTPMEEAPKGMLARGSYNIKSRFTDDDKTDHLSW 192
>sp|P19803|GDIR1_BOVIN Rho GDP-dissociation inhibitor 1 OS=Bos taurus GN=ARHGDIA PE=1 SV=3
Length = 204
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 38/66 (57%), Positives = 46/66 (69%)
Query: 63 VDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFEI 122
+DK +MVGSY P E + TP E+AP GMLARG Y+++S FTDDD +HL WEW I
Sbjct: 139 IDKTDYMVGSYGPRAEEYEFLTPMEEAPKGMLARGSYNIKSRFTDDDRTDHLSWEWNLTI 198
Query: 123 KKSWKD 128
KK WKD
Sbjct: 199 KKEWKD 204
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 35/49 (71%)
Query: 3 HMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKW 51
+MVGSY P E + TP E+AP GMLARG Y+++S FTDDD +HL W
Sbjct: 144 YMVGSYGPRAEEYEFLTPMEEAPKGMLARGSYNIKSRFTDDDRTDHLSW 192
>sp|P52566|GDIR2_HUMAN Rho GDP-dissociation inhibitor 2 OS=Homo sapiens GN=ARHGDIB PE=1
SV=3
Length = 201
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 37/64 (57%), Positives = 41/64 (64%)
Query: 63 VDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFEI 122
VDK MVGSY P E + TP E+AP GMLARG Y +S FTDDD +HL WEW I
Sbjct: 136 VDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFTDDDKQDHLSWEWNLSI 195
Query: 123 KKSW 126
KK W
Sbjct: 196 KKEW 199
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/48 (58%), Positives = 32/48 (66%)
Query: 4 MVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKW 51
MVGSY P E + TP E+AP GMLARG Y +S FTDDD +HL W
Sbjct: 142 MVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFTDDDKQDHLSW 189
>sp|Q61599|GDIR2_MOUSE Rho GDP-dissociation inhibitor 2 OS=Mus musculus GN=Arhgdib PE=1
SV=3
Length = 200
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 37/64 (57%), Positives = 41/64 (64%)
Query: 63 VDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFEI 122
VDK MVGSY P E + TP E+AP GMLARG Y +S FTDDD +HL WEW I
Sbjct: 135 VDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFTDDDKQDHLTWEWNLAI 194
Query: 123 KKSW 126
KK W
Sbjct: 195 KKDW 198
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/48 (58%), Positives = 32/48 (66%)
Query: 4 MVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKW 51
MVGSY P E + TP E+AP GMLARG Y +S FTDDD +HL W
Sbjct: 141 MVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFTDDDKQDHLTW 188
>sp|Q99819|GDIR3_HUMAN Rho GDP-dissociation inhibitor 3 OS=Homo sapiens GN=ARHGDIG PE=2
SV=2
Length = 225
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 38/68 (55%), Positives = 43/68 (63%)
Query: 61 FAVDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTF 120
VDK V+MVGSY PS + + TP E+AP G L RG Y V SLFTDDD HL WEW
Sbjct: 158 LRVDKTVYMVGSYGPSAQEYEFVTPVEEAPRGALVRGPYLVVSLFTDDDRTHHLSWEWGL 217
Query: 121 EIKKSWKD 128
I + WKD
Sbjct: 218 CICQDWKD 225
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/50 (58%), Positives = 33/50 (66%)
Query: 2 VHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKW 51
V+MVGSY PS + + TP E+AP G L RG Y V SLFTDDD HL W
Sbjct: 164 VYMVGSYGPSAQEYEFVTPVEEAPRGALVRGPYLVVSLFTDDDRTHHLSW 213
>sp|Q9TU03|GDIR2_BOVIN Rho GDP-dissociation inhibitor 2 OS=Bos taurus GN=ARHGDIB PE=2 SV=3
Length = 200
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/101 (46%), Positives = 55/101 (54%), Gaps = 3/101 (2%)
Query: 28 MLARGV-YSVQSLF-TDDDDAEHLKWVTLILLPLRFAVDKMVHMVGSYPPSLELQSYTTP 85
+L GV Y V+ F + D LK+V VDK MVGSY P E + TP
Sbjct: 99 VLKEGVEYRVKINFKVNKDIVSGLKYVQHTYR-TGVKVDKATFMVGSYGPRPEEYEFLTP 157
Query: 86 PEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFEIKKSW 126
E+AP GMLARG Y +S FTDDD +HL WEW IKK W
Sbjct: 158 IEEAPKGMLARGTYHNKSFFTDDDKHDHLTWEWNLSIKKDW 198
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/48 (58%), Positives = 32/48 (66%)
Query: 4 MVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKW 51
MVGSY P E + TP E+AP GMLARG Y +S FTDDD +HL W
Sbjct: 141 MVGSYGPRPEEYEFLTPIEEAPKGMLARGTYHNKSFFTDDDKHDHLTW 188
>sp|Q62160|GDIR3_MOUSE Rho GDP-dissociation inhibitor 3 OS=Mus musculus GN=Arhgdig PE=2
SV=1
Length = 225
Score = 78.6 bits (192), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 43/68 (63%)
Query: 61 FAVDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTF 120
VDK + MVGSY P + + T E+AP G LARG+Y V+SLFTDDD HL WEW
Sbjct: 158 LRVDKAIFMVGSYGPRAQEYEFVTSVEEAPRGALARGLYVVRSLFTDDDRLNHLSWEWHL 217
Query: 121 EIKKSWKD 128
+ + WKD
Sbjct: 218 HVCQDWKD 225
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 33/50 (66%)
Query: 2 VHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKW 51
+ MVGSY P + + T E+AP G LARG+Y V+SLFTDDD HL W
Sbjct: 164 IFMVGSYGPRAQEYEFVTSVEEAPRGALARGLYVVRSLFTDDDRLNHLSW 213
>sp|Q0II80|GDIR3_BOVIN Rho GDP-dissociation inhibitor 3 OS=Bos taurus GN=ARHGDIG PE=2 SV=1
Length = 225
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 34/65 (52%), Positives = 41/65 (63%)
Query: 63 VDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFEI 122
VDK V+MVGSY PS + + TP E+AP G L RG Y V S FTDDD HL WEW +
Sbjct: 160 VDKAVYMVGSYGPSAQEYEFVTPVEEAPRGALVRGAYVVTSFFTDDDRTAHLSWEWGLYV 219
Query: 123 KKSWK 127
+ W+
Sbjct: 220 CQDWE 224
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 32/50 (64%)
Query: 2 VHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKW 51
V+MVGSY PS + + TP E+AP G L RG Y V S FTDDD HL W
Sbjct: 164 VYMVGSYGPSAQEYEFVTPVEEAPRGALVRGAYVVTSFFTDDDRTAHLSW 213
>sp|Q20496|GDIR_CAEEL Probable rho GDP-dissociation inhibitor OS=Caenorhabditis elegans
GN=rhi-1 PE=2 SV=1
Length = 191
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 42/64 (65%)
Query: 61 FAVDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTF 120
V+ +M+GSY P LE+Q Y +P E+APSGM+ RG Y V S TDDD+ +L W+WT
Sbjct: 127 ITVENEKYMMGSYAPKLEIQEYKSPNEEAPSGMMHRGKYKVYSKITDDDNNVYLDWQWTL 186
Query: 121 EIKK 124
I K
Sbjct: 187 HITK 190
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 35/49 (71%)
Query: 3 HMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKW 51
+M+GSY P LE+Q Y +P E+APSGM+ RG Y V S TDDD+ +L W
Sbjct: 134 YMMGSYAPKLEIQEYKSPNEEAPSGMMHRGKYKVYSKITDDDNNVYLDW 182
>sp|O14224|GDIR_SCHPO Rho GDP-dissociation inhibitor OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPAC6F12.06 PE=1 SV=1
Length = 205
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 42/67 (62%)
Query: 61 FAVDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTF 120
F VDK M+GSY PS +T+ P++AP+GMLARG Y F DDD H ++ W F
Sbjct: 139 FVVDKTSTMIGSYGPSETPYDFTSEPDEAPTGMLARGHYEANGKFVDDDKVVHHEFVWAF 198
Query: 121 EIKKSWK 127
++ KSWK
Sbjct: 199 DVAKSWK 205
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 31/49 (63%)
Query: 4 MVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWV 52
M+GSY PS +T+ P++AP+GMLARG Y F DDD H ++V
Sbjct: 147 MIGSYGPSETPYDFTSEPDEAPTGMLARGHYEANGKFVDDDKVVHHEFV 195
>sp|Q95UQ1|GDIR1_DICDI Putative rho GDP-dissociation inhibitor 1 OS=Dictyostelium
discoideum GN=rdiA PE=1 SV=1
Length = 197
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 41/63 (65%), Gaps = 3/63 (4%)
Query: 68 HMVGSYPPSLELQSYTTPP---EDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFEIKK 124
HM+GS+ P S T P E+APSGMLARG Y+ + +FTDDD+ EHL E+ F IK
Sbjct: 132 HMLGSFAPQALAHSVTNPRHGWEEAPSGMLARGSYTAKVVFTDDDNEEHLSVEYAFSIKS 191
Query: 125 SWK 127
WK
Sbjct: 192 DWK 194
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 34/50 (68%), Gaps = 3/50 (6%)
Query: 3 HMVGSYPPSLELQSYTTPP---EDAPSGMLARGVYSVQSLFTDDDDAEHL 49
HM+GS+ P S T P E+APSGMLARG Y+ + +FTDDD+ EHL
Sbjct: 132 HMLGSFAPQALAHSVTNPRHGWEEAPSGMLARGSYTAKVVFTDDDNEEHL 181
>sp|Q9SFC6|GDIR_ARATH Rho GDP-dissociation inhibitor 1 OS=Arabidopsis thaliana GN=GDI1
PE=1 SV=1
Length = 240
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 42/64 (65%)
Query: 63 VDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFEI 122
VD+ M+G++ P LE ++ P E PSGM ARG YS ++ F DDD+ +L+ ++F+I
Sbjct: 174 VDRAKEMLGTFSPQLEPYNHVMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDI 233
Query: 123 KKSW 126
+K W
Sbjct: 234 RKEW 237
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%)
Query: 3 HMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLK 50
M+G++ P LE ++ P E PSGM ARG YS ++ F DDD+ +L+
Sbjct: 179 EMLGTFSPQLEPYNHVMPEETTPSGMFARGSYSARTKFLDDDNKCYLE 226
>sp|P80237|GDIR1_CAVPO Rho GDP-dissociation inhibitor 1 (Fragments) OS=Cavia porcellus
GN=ARHGDIA PE=1 SV=1
Length = 111
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 35/62 (56%), Gaps = 8/62 (12%)
Query: 63 VDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFEI 122
+DK +MVGSY P E + TP E+AP GMLAR FTDDD +HL E I
Sbjct: 58 IDKTDYMVGSYGPRAEEYEFLTPMEEAPKGMLAR--------FTDDDKTDHLSGERNLTI 109
Query: 123 KK 124
KK
Sbjct: 110 KK 111
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 28/47 (59%), Gaps = 8/47 (17%)
Query: 3 HMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHL 49
+MVGSY P E + TP E+AP GMLAR FTDDD +HL
Sbjct: 63 YMVGSYGPRAEEYEFLTPMEEAPKGMLAR--------FTDDDKTDHL 101
>sp|Q12434|GDIR_YEAST Rho GDP-dissociation inhibitor OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RDI1 PE=1 SV=1
Length = 202
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 61 FAVDKMVHMVGSYPPSLELQSY---TTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWE 117
AVDK+ +GSY P+ + + + P +APSG LARG YS S F DDD HL
Sbjct: 135 IAVDKIDDHLGSYAPNTKTKPFYEVELPESEAPSGFLARGNYSAVSKFIDDDKTNHLTLN 194
Query: 118 WTFEIKK 124
W EI K
Sbjct: 195 WGVEIVK 201
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 5 VGSYPPSLELQSY---TTPPEDAPSGMLARGVYSVQSLFTDDDDAEHL 49
+GSY P+ + + + P +APSG LARG YS S F DDD HL
Sbjct: 144 LGSYAPNTKTKPFYEVELPESEAPSGFLARGNYSAVSKFIDDDKTNHL 191
>sp|Q8WHM8|MATK_PISST Maturase K OS=Pistia stratiotes GN=matK PE=3 SV=1
Length = 511
Score = 32.3 bits (72), Expect = 0.78, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 9 PPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWVTLILLPLRFAVDKMVH 68
P SL L S ++ P R ++S+ F +D+ HL W++ IL+P ++ +V
Sbjct: 110 PFSLRLVSSLEEKKEIPKSQNLRSIHSIFPFF--EDNFSHLNWISDILIPYPDHLEMLVQ 167
Query: 69 MVGSY---PPSLEL 79
++ + PSL L
Sbjct: 168 ILQCWIQDVPSLHL 181
>sp|Q8WHJ9|MATK_WOLAR Maturase K OS=Wolffia arrhiza GN=matK PE=3 SV=1
Length = 508
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 9 PPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWVTLILLPLRFAVDKMVH 68
P SL L S +D P R ++S+ S +D HL +++ ILLP ++K++
Sbjct: 108 PLSLRLVSSLKEKKDIPKYQNLRSIHSIFSFL--EDKFPHLHYISDILLPYPVHLEKLIQ 165
Query: 69 MVGSY---PPSLEL 79
++ + P+L L
Sbjct: 166 ILQCWIHDGPTLHL 179
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.133 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,860,061
Number of Sequences: 539616
Number of extensions: 2300617
Number of successful extensions: 4117
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 4078
Number of HSP's gapped (non-prelim): 39
length of query: 128
length of database: 191,569,459
effective HSP length: 94
effective length of query: 34
effective length of database: 140,845,555
effective search space: 4788748870
effective search space used: 4788748870
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)