Query psy9193
Match_columns 128
No_of_seqs 145 out of 411
Neff 4.9
Searched_HMMs 46136
Date Fri Aug 16 21:17:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9193.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9193hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3205|consensus 100.0 5E-44 1.1E-48 279.6 11.8 114 13-127 80-200 (200)
2 PF02115 Rho_GDI: RHO protein 100.0 1.7E-41 3.7E-46 267.6 8.4 93 32-125 107-200 (200)
3 KOG3205|consensus 99.8 3.8E-21 8.3E-26 151.0 5.2 55 1-55 139-193 (200)
4 PF02115 Rho_GDI: RHO protein 99.7 9.3E-19 2E-23 138.5 1.9 54 2-55 142-195 (200)
5 PF02221 E1_DerP2_DerF2: ML do 84.6 11 0.00025 26.3 8.7 86 31-122 31-134 (134)
6 cd00917 PG-PI_TP The phosphati 84.5 9.3 0.0002 27.4 7.8 82 28-114 24-116 (122)
7 PF07504 FTP: Fungalysin/Therm 81.6 4.1 8.9E-05 24.8 4.4 35 33-70 1-35 (51)
8 PF05351 GMP_PDE_delta: GMP-PD 80.4 3.7 7.9E-05 31.8 4.6 81 28-110 57-145 (157)
9 PF11797 DUF3324: Protein of u 77.5 26 0.00056 25.8 8.9 85 32-124 42-131 (140)
10 smart00737 ML Domain involved 72.7 29 0.00063 24.1 8.2 81 29-114 22-112 (118)
11 PF04379 DUF525: Protein of un 60.8 29 0.00062 24.2 5.1 79 22-102 4-87 (90)
12 cd00258 GM2-AP GM2 activator p 59.2 25 0.00054 27.4 5.0 39 83-123 122-160 (162)
13 PRK05461 apaG CO2+/MG2+ efflux 52.1 95 0.002 23.0 10.9 91 19-116 18-113 (127)
14 cd01759 PLAT_PL PLAT/LH2 domai 44.2 1.2E+02 0.0026 21.9 7.1 44 33-78 2-45 (113)
15 PF02494 HYR: HYR domain; Int 39.4 85 0.0019 20.3 4.6 30 87-117 47-76 (81)
16 PF13752 DUF4165: Domain of un 39.3 46 0.00099 25.0 3.5 30 94-123 91-120 (124)
17 smart00697 DM8 Repeats found i 39.0 76 0.0017 20.6 4.3 38 83-122 55-92 (93)
18 PF04584 Pox_A28: Poxvirus A28 35.0 45 0.00098 25.5 3.0 60 45-116 39-100 (140)
19 cd00915 MD-1_MD-2 MD-1 and MD- 29.3 2.4E+02 0.0053 21.0 8.5 80 31-117 34-127 (130)
20 COG2967 ApaG Uncharacterized p 29.2 2.5E+02 0.0054 21.1 8.8 87 17-110 15-107 (126)
21 PF04234 CopC: CopC domain; I 28.5 1.5E+02 0.0033 20.1 4.6 29 94-123 69-97 (97)
22 PF15432 Sec-ASP3: Accessory S 27.8 1.8E+02 0.0038 21.6 5.1 51 28-87 49-101 (128)
23 KOG1690|consensus 27.6 46 0.001 27.1 2.0 19 21-39 34-52 (215)
24 PF11850 DUF3370: Protein of u 26.5 1.1E+02 0.0024 27.4 4.4 63 25-94 368-435 (441)
25 PF04787 Pox_H7: Late protein 24.9 58 0.0013 25.1 2.1 25 95-119 29-54 (147)
26 PF06155 DUF971: Protein of un 24.7 16 0.00035 24.7 -0.9 38 81-118 50-87 (89)
27 KOG4038|consensus 22.9 11 0.00024 28.6 -2.1 86 23-110 48-138 (150)
28 PF00379 Chitin_bind_4: Insect 22.8 1.9E+02 0.004 17.5 4.0 29 86-119 18-46 (52)
29 PF13511 DUF4124: Domain of un 22.6 57 0.0012 20.1 1.4 13 103-115 16-28 (60)
30 cd00912 ML The ML (MD-2-relate 21.4 3E+02 0.0065 19.3 8.8 90 22-113 20-120 (127)
31 COG5514 Uncharacterized conser 20.5 1.4E+02 0.0029 24.0 3.4 38 22-60 51-96 (203)
No 1
>KOG3205|consensus
Probab=100.00 E-value=5e-44 Score=279.64 Aligned_cols=114 Identities=39% Similarity=0.658 Sum_probs=104.7
Q ss_pred CCCcccCCCCCCC--ccceE----EEEEEEEEEEEEcCC-CceeEEEEEeeecceeEeecccceeeeeCCCCCCeeecCC
Q psy9193 13 ELQSYTTPPEDAP--SGMLA----RGVYSVQSLFTDDDD-AEHLKWVTLILLPLRFAVDKMVHMVGSYPPSLELQSYTTP 85 (128)
Q Consensus 13 ~~~~~~~p~eeaP--sG~l~----rg~Ysvk~~F~ddd~-v~~L~y~q~~Vkr~Gi~Vdk~~~miGsy~P~~e~y~~~~~ 85 (128)
++.++.++.+-.| ++..+ .+.|+++|.|+|++. ++||+|.|+ |+|.||+|||+.+|||||+|++|+|++.+|
T Consensus 80 ~pi~ldlt~~~~~~~k~~~f~iKEGs~Y~lki~F~Vq~eIvSGLrY~q~-v~r~Gv~VDk~~~MlGSy~P~~e~ye~~~p 158 (200)
T KOG3205|consen 80 PPIVLDLTGDLSPELKKQWFTIKEGSEYRLKISFRVQREIVSGLRYVQT-VYRTGVKVDKTKYMLGSYGPQAEPYEFVTP 158 (200)
T ss_pred CCeEEeCCCCccccccCceEEeecCcEEEEEEEEEEeeheeccceeeeE-EeecceEEeehhhhcccCCCCCcceeeeCC
Confidence 3455666666666 78777 379999999999966 799999999 599999999999999999999999999999
Q ss_pred CCCCCccceeeeeeeeEEEEEeCCCCcEEEEEeceeeecCCC
Q psy9193 86 PEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFEIKKSWK 127 (128)
Q Consensus 86 ~eeaPsG~laRG~Y~a~s~f~DdD~~~~l~~ew~feI~K~W~ 127 (128)
+|||||||||||+|.|+|+|+|||+++||+|+|+|+|+|+|.
T Consensus 159 ~eeAPsGmlaRG~Ys~~skF~DDDk~~hLe~~w~~~I~K~W~ 200 (200)
T KOG3205|consen 159 EEEAPSGMLARGSYSAKSKFTDDDKTCHLEWNWTFDIKKEWK 200 (200)
T ss_pred cccCCccceeecceeeeeEEecCCCceEEEEEEEEEEeeccC
Confidence 999999999999999999999999999999999999999995
No 2
>PF02115 Rho_GDI: RHO protein GDP dissociation inhibitor; InterPro: IPR000406 The GDP dissociation inhibitor for rho proteins, rho GDI, regulates GDP/GTP exchange by inhibiting the dissociation of GDP from them. The protein contains 204 amino acids, with a calculated Mr value of 23,421. Hydropathy analysis shows it to be largely hydrophilic, with a single hydrophobic region. Results of database searches suggest rho GDI is a novel protein, currently with no known homologue. The protein plays an important role in the activation of the superoxide (O2-)-generating NADPH oxidase of phagocytes. This process requires the interaction of membrane-associated cytochrome b559 with 3 cytosolic components: p47-phox, p67-phox and a heterodimer of the small G-protein p21rac1 and rho GDI []. The association of p21rac and GDI inhibits dissociation of GDP from p21rac, thereby maintaining it in an inactive form. The proteins are attached via a lipid tail on p21rac that binds to the hydrophobic region of GDI []. Dissociation of these proteins might be mediated by the release of lipids (e.g., arachidonate and phosphatidate) from membranes through the action of phospholipases []. The lipids may then compete with the lipid tail on p21rac for the hydrophobic pocket on GDI.; GO: 0005094 Rho GDP-dissociation inhibitor activity, 0005737 cytoplasm; PDB: 2JHV_A 2JHU_A 2JI0_A 2JHS_A 1RHO_A 2JHW_A 1FT3_A 2JHZ_B 1QVY_C 1FST_B ....
Probab=100.00 E-value=1.7e-41 Score=267.63 Aligned_cols=93 Identities=45% Similarity=0.755 Sum_probs=84.3
Q ss_pred EEEEEEEEEEEcCC-CceeEEEEEeeecceeEeecccceeeeeCCCCCCeeecCCCCCCCccceeeeeeeeEEEEEeCCC
Q psy9193 32 GVYSVQSLFTDDDD-AEHLKWVTLILLPLRFAVDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDD 110 (128)
Q Consensus 32 g~Ysvk~~F~ddd~-v~~L~y~q~~Vkr~Gi~Vdk~~~miGsy~P~~e~y~~~~~~eeaPsG~laRG~Y~a~s~f~DdD~ 110 (128)
++|+++++|+|++. ++||+|+|+ |||+||+||+++.|||||+|++++|+++||+|+|||||||||+|+|+|+|+|||+
T Consensus 107 s~Y~l~i~F~V~~~ivsGL~Y~q~-Vkr~Gi~Vdk~~~miGsy~P~~e~y~~~~p~eeaPsG~laRG~Y~aks~f~DdD~ 185 (200)
T PF02115_consen 107 SKYRLKITFKVQHEIVSGLKYVQT-VKRKGIPVDKREEMIGSYAPQTEPYEKTFPEEEAPSGMLARGSYTAKSKFVDDDK 185 (200)
T ss_dssp -EEEEEEEEEE-SS-EEEEEEEEE-EEETTEEEEEEEEEEEEE--ESSEEEEEEEEEE--BSTTT-EEEEEEEEEEETTS
T ss_pred CEEEEEEEEEECCccccCcEEEEE-EEECCEeEcccceeeeccCCCCcceEEeCcCccCCCceeEeeeeeEEEEEEeCCC
Confidence 79999999999987 799999999 6999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEeceeeecC
Q psy9193 111 AEHLKWEWTFEIKKS 125 (128)
Q Consensus 111 ~~~l~~ew~feI~K~ 125 (128)
++||+|+|+|+|+|+
T Consensus 186 ~~~l~~~w~feI~Kd 200 (200)
T PF02115_consen 186 NVHLEWEWSFEIKKD 200 (200)
T ss_dssp SECEEEEEEEEEESS
T ss_pred cEEEEEEEEEEEecC
Confidence 999999999999996
No 3
>KOG3205|consensus
Probab=99.83 E-value=3.8e-21 Score=150.98 Aligned_cols=55 Identities=53% Similarity=0.828 Sum_probs=52.9
Q ss_pred CcceeeecCCCCCCCcccCCCCCCCccceEEEEEEEEEEEEEcCCCceeEEEEEe
Q psy9193 1 MVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWVTLI 55 (128)
Q Consensus 1 ~~~m~Gsy~P~~~~~~~~~p~eeaPsG~l~rg~Ysvk~~F~ddd~v~~L~y~q~~ 55 (128)
+.+|||||+|++|+|.|.+|+||||+||||||+|+++++|+|||+.+||.|.|.+
T Consensus 139 ~~~MlGSy~P~~e~ye~~~p~eeAPsGmlaRG~Ys~~skF~DDDk~~hLe~~w~~ 193 (200)
T KOG3205|consen 139 TKYMLGSYGPQAEPYEFVTPEEEAPSGMLARGSYSAKSKFTDDDKTCHLEWNWTF 193 (200)
T ss_pred hhhhcccCCCCCcceeeeCCcccCCccceeecceeeeeEEecCCCceEEEEEEEE
Confidence 3689999999999999999999999999999999999999999999999999985
No 4
>PF02115 Rho_GDI: RHO protein GDP dissociation inhibitor; InterPro: IPR000406 The GDP dissociation inhibitor for rho proteins, rho GDI, regulates GDP/GTP exchange by inhibiting the dissociation of GDP from them. The protein contains 204 amino acids, with a calculated Mr value of 23,421. Hydropathy analysis shows it to be largely hydrophilic, with a single hydrophobic region. Results of database searches suggest rho GDI is a novel protein, currently with no known homologue. The protein plays an important role in the activation of the superoxide (O2-)-generating NADPH oxidase of phagocytes. This process requires the interaction of membrane-associated cytochrome b559 with 3 cytosolic components: p47-phox, p67-phox and a heterodimer of the small G-protein p21rac1 and rho GDI []. The association of p21rac and GDI inhibits dissociation of GDP from p21rac, thereby maintaining it in an inactive form. The proteins are attached via a lipid tail on p21rac that binds to the hydrophobic region of GDI []. Dissociation of these proteins might be mediated by the release of lipids (e.g., arachidonate and phosphatidate) from membranes through the action of phospholipases []. The lipids may then compete with the lipid tail on p21rac for the hydrophobic pocket on GDI.; GO: 0005094 Rho GDP-dissociation inhibitor activity, 0005737 cytoplasm; PDB: 2JHV_A 2JHU_A 2JI0_A 2JHS_A 1RHO_A 2JHW_A 1FT3_A 2JHZ_B 1QVY_C 1FST_B ....
Probab=99.73 E-value=9.3e-19 Score=138.50 Aligned_cols=54 Identities=50% Similarity=0.801 Sum_probs=47.0
Q ss_pred cceeeecCCCCCCCcccCCCCCCCccceEEEEEEEEEEEEEcCCCceeEEEEEe
Q psy9193 2 VHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWVTLI 55 (128)
Q Consensus 2 ~~m~Gsy~P~~~~~~~~~p~eeaPsG~l~rg~Ysvk~~F~ddd~v~~L~y~q~~ 55 (128)
++|||||+|++++|++++|+|+||+||||||+|+|+++|+|||+.+||.|.|.+
T Consensus 142 ~~miGsy~P~~e~y~~~~p~eeaPsG~laRG~Y~aks~f~DdD~~~~l~~~w~f 195 (200)
T PF02115_consen 142 EEMIGSYAPQTEPYEKTFPEEEAPSGMLARGSYTAKSKFVDDDKNVHLEWEWSF 195 (200)
T ss_dssp EEEEEEE--ESSEEEEEEEEEE--BSTTT-EEEEEEEEEEETTSSECEEEEEEE
T ss_pred ceeeeccCCCCcceEEeCcCccCCCceeEeeeeeEEEEEEeCCCcEEEEEEEEE
Confidence 579999999999999999999999999999999999999999999999999975
No 5
>PF02221 E1_DerP2_DerF2: ML domain; InterPro: IPR003172 The MD-2-related lipid-recognition (ML) domain is implicated in lipid recognition, particularly in the recognition of pathogen related products. It has an immunoglobulin-like beta-sandwich fold similar to that of E-set Ig domains. This domain is present in the following proteins: Epididymal secretory protein E1 (also known as Niemann-Pick C2 protein), which is known to bind cholesterol. Niemann-Pick disease type C2 is a fatal hereditary disease characterised by accumulation of low-density lipoprotein-derived cholesterol in lysosomes []. House-dust mite allergen proteins such as Der f 2 from Dermatophagoides farinae and Der p 2 from Dermatophagoides pteronyssinus []. ; PDB: 2AG9_B 1G13_B 2AG2_B 2AG4_A 1TJJ_C 1PU5_C 1PUB_A 2AF9_A 3T6Q_D 3M7O_B ....
Probab=84.56 E-value=11 Score=26.28 Aligned_cols=86 Identities=23% Similarity=0.294 Sum_probs=52.8
Q ss_pred EEEEEEEEEEEEc-CCCceeEEEEEeeecce-eEeecc----c-ceeee---eC---CCC--CC--eeecCC-CCCCCcc
Q psy9193 31 RGVYSVQSLFTDD-DDAEHLKWVTLILLPLR-FAVDKM----V-HMVGS---YP---PSL--EL--QSYTTP-PEDAPSG 92 (128)
Q Consensus 31 rg~Ysvk~~F~dd-d~v~~L~y~q~~Vkr~G-i~Vdk~----~-~miGs---y~---P~~--e~--y~~~~~-~eeaPsG 92 (128)
.+.+++++.|... +...+++..-. ++-.| ++|.-. . ..-.. .. |-. +. |.+.++ +...|.|
T Consensus 31 g~~~~i~~~f~~~~~~~~~~~~~v~-~~~~g~~~ip~~g~~~~~d~C~~~~~~~~~CPi~~G~~~~~~~~~~i~~~~p~~ 109 (134)
T PF02221_consen 31 GQPVTITIDFNTSKKDSDGLKVKVE-AKVGGWIPIPFPGLCEYYDLCDNLFGNGLSCPIKAGEYYTYTYTIPIPKIYPPG 109 (134)
T ss_dssp TSEEEEEEEEEECSSBBSSEEEEEE-EEETTEEEEEEESSSCEEEEEGTSCCSSTTSTBTTTEEEEEEEEEEESTTSSSE
T ss_pred CCEEEEEEEEEEccccccCCEEEEE-EEECCcEEEccccccCccchhhhcccccccCccCCCcEEEEEEEEEcccceeeE
Confidence 3699999999555 44778877544 46676 776554 2 12110 11 322 22 333333 3555555
Q ss_pred ceeeeeeeeEEEEEeCCCCcEEEEEeceee
Q psy9193 93 MLARGVYSVQSLFTDDDDAEHLKWEWTFEI 122 (128)
Q Consensus 93 ~laRG~Y~a~s~f~DdD~~~~l~~ew~feI 122 (128)
+|+++-+++|+++...+=++-.++|
T Consensus 110 -----~~~i~~~l~d~~~~~i~C~~~~v~I 134 (134)
T PF02221_consen 110 -----KYTIQWKLTDQDGEEIACFEFPVKI 134 (134)
T ss_dssp -----EEEEEEEEEETTTEEEEEEEEEEEE
T ss_pred -----EEEEEEEEEeCCCCEEEEEEEEeEC
Confidence 9999999999998777666655554
No 6
>cd00917 PG-PI_TP The phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP) has been shown to bind phosphatidylglycerol and phosphatidylinositol, but the biological significance of this is still obscure. These proteins belong to the ML domain family.
Probab=84.48 E-value=9.3 Score=27.36 Aligned_cols=82 Identities=16% Similarity=0.045 Sum_probs=50.2
Q ss_pred ceEEEEEEEEEEEEEcCCCce-eEEEEEeeecceeEeeccccee-------eeeCCCC---CCeeecCCCCCCCccceee
Q psy9193 28 MLARGVYSVQSLFTDDDDAEH-LKWVTLILLPLRFAVDKMVHMV-------GSYPPSL---ELQSYTTPPEDAPSGMLAR 96 (128)
Q Consensus 28 ~l~rg~Ysvk~~F~ddd~v~~-L~y~q~~Vkr~Gi~Vdk~~~mi-------Gsy~P~~---e~y~~~~~~eeaPsG~laR 96 (128)
+...+..++.+.|+.+..+.. +.-.=. ++-.||++-....-+ |--=|=. ..+..+ -+.| .++-.
T Consensus 24 ~~~G~~~ti~~~~~~~~~v~~g~~~~v~-~~~~~i~~~~~~~DlC~~~~~~g~~CPi~~G~~~~~~~---~~ip-~~~P~ 98 (122)
T cd00917 24 PAAGQNLTIEASGSVGKEIEDGAYVVVE-VKYGFIRLLSETYDLCDETKNVDLSCPIEPGDKFLTKL---VDLP-GEIPP 98 (122)
T ss_pred cCCCCcEEEEEEEEECcCcCCCCEEEEE-EEECCEEeecccCCcccccccCCCcCCcCCCcEEEEEE---eeCC-CCCCC
Confidence 444579999999999988764 454434 588898876433311 2111322 122222 2333 44555
Q ss_pred eeeeeEEEEEeCCCCcEE
Q psy9193 97 GVYSVQSLFTDDDDAEHL 114 (128)
Q Consensus 97 G~Y~a~s~f~DdD~~~~l 114 (128)
|+|.++.++.|+|+..+.
T Consensus 99 g~y~v~~~l~d~~~~~i~ 116 (122)
T cd00917 99 GKYTVSARAYTKDDEEIT 116 (122)
T ss_pred ceEEEEEEEECCCCCEEE
Confidence 899999999998775543
No 7
>PF07504 FTP: Fungalysin/Thermolysin Propeptide Motif; InterPro: IPR011096 The FTP domain is found in the propeptide region of bacterial and fungal metallopeptidases belonging to MEROPS peptidase families M4 and M36 respectively. In bacteria the FTP domain is N-terminal to this entry, the PepSY domain; in fungi the M36 peptidases do not contain the PepSY domain. Propeptide swapping experiments have shown that the propeptides of the M4 and M36 families are not functionally interchangeable []. The function of the propeptide in M36 peptidases has not been described, but it is likely, as in other related peptidases, to have targeting, chaperone activity and to inhibit peptidase activity, so as to prevent premature activation [, ].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding; PDB: 3NQY_A 3NQZ_A.
Probab=81.62 E-value=4.1 Score=24.85 Aligned_cols=35 Identities=20% Similarity=0.181 Sum_probs=24.8
Q ss_pred EEEEEEEEEEcCCCceeEEEEEeeecceeEeeccccee
Q psy9193 33 VYSVQSLFTDDDDAEHLKWVTLILLPLRFAVDKMVHMV 70 (128)
Q Consensus 33 ~Ysvk~~F~ddd~v~~L~y~q~~Vkr~Gi~Vdk~~~mi 70 (128)
.|++....+|..+..+.+|.|.+ .||+|.-.+..+
T Consensus 1 ~l~~~~~~~d~~G~~~vr~qQ~~---~GvpV~g~~~~v 35 (51)
T PF07504_consen 1 DLKVTSVTTDKNGKTHVRYQQYY---NGVPVYGGELIV 35 (51)
T ss_dssp -EEEEEEEE-TTSEEEEEEEEEE---TTEEB-S--EEE
T ss_pred CcEEEEEEECCCCCEEEEEEEEE---CCEEEeCCEEEE
Confidence 36778888888778999999986 899987766544
No 8
>PF05351 GMP_PDE_delta: GMP-PDE, delta subunit; InterPro: IPR008015 GMP-PDE delta subunit was originally identified as a fourth subunit of rod-specific cGMP phosphodiesterase (PDE) (3.1.4.35 from EC). The precise function of PDE delta subunit in the rod specific GMP-PDE complex is unclear. In addition, PDE delta subunit is not confined to photoreceptor cells but is widely distributed in different tissues. PDE delta subunit is thought to be a specific soluble transport factor for certain prenylated proteins and Arl2-GTP a regulator of PDE-mediated transport [].; PDB: 3RBQ_B 3GQQ_C 3T5I_A 3T5G_B 1KSG_B 1KSJ_B 1KSH_B.
Probab=80.38 E-value=3.7 Score=31.84 Aligned_cols=81 Identities=17% Similarity=0.242 Sum_probs=57.0
Q ss_pred ceEEEEEEEEEEEEE-cCCCceeEEEEEeeecceeEeecccceeeeeCCCCC---CeeecCC--CCCCCccceeeeee--
Q psy9193 28 MLARGVYSVQSLFTD-DDDAEHLKWVTLILLPLRFAVDKMVHMVGSYPPSLE---LQSYTTP--PEDAPSGMLARGVY-- 99 (128)
Q Consensus 28 ~l~rg~Ysvk~~F~d-dd~v~~L~y~q~~Vkr~Gi~Vdk~~~miGsy~P~~e---~y~~~~~--~eeaPsG~laRG~Y-- 99 (128)
+|-.-+=..++.|.+ ++.+.+++.+|. ++=+|-.+..=..-.|==-|++. .+.+.+| .+..|.-|| .|.|
T Consensus 57 ~L~~k~V~~~i~Fsvg~~pv~nFRmier-hyF~~~llk~~dF~FGFcIP~S~NTwE~iye~p~l~~~l~~~mi-~gp~et 134 (157)
T PF05351_consen 57 FLKLKTVGREIEFSVGDEPVNNFRMIER-HYFRDQLLKSFDFEFGFCIPNSTNTWEHIYEFPPLSQMLPAEMI-SGPYET 134 (157)
T ss_dssp GGG-SEEEEEEEEEE-SS-ECCEEEEEE-EEETTEEEEEEEEEEEEE-TTCEEEEEEEEEB--CSCCHHHHHH-CTTTTE
T ss_pred HhcchhheEEEEEEECceeccccEeeEe-eeecCceeeEEEeeeeeEcCCCccceeEEEEcCCCCchhHHHHH-cCCCcc
Confidence 343355678999999 666999999999 59888888888888887779964 4555565 334444444 4766
Q ss_pred eeEEEEEeCCC
Q psy9193 100 SVQSLFTDDDD 110 (128)
Q Consensus 100 ~a~s~f~DdD~ 110 (128)
..-|.|.+||+
T Consensus 135 ~sdSfyfv~~~ 145 (157)
T PF05351_consen 135 KSDSFYFVDDK 145 (157)
T ss_dssp EEEEEEEETTE
T ss_pred eEEEEEEeCCE
Confidence 57778888887
No 9
>PF11797 DUF3324: Protein of unknown function C-terminal (DUF3324); InterPro: IPR021759 This family consists of several hypothetical bacterial proteins of unknown function.
Probab=77.52 E-value=26 Score=25.79 Aligned_cols=85 Identities=11% Similarity=0.071 Sum_probs=55.3
Q ss_pred EEEEEEEEEEEcCC--CceeEEEEEeeecce--eEeecccceeeeeCCCCC-CeeecCCCCCCCccceeeeeeeeEEEEE
Q psy9193 32 GVYSVQSLFTDDDD--AEHLKWVTLILLPLR--FAVDKMVHMVGSYPPSLE-LQSYTTPPEDAPSGMLARGVYSVQSLFT 106 (128)
Q Consensus 32 g~Ysvk~~F~ddd~--v~~L~y~q~~Vkr~G--i~Vdk~~~miGsy~P~~e-~y~~~~~~eeaPsG~laRG~Y~a~s~f~ 106 (128)
|+-.+.+.++-... +..|+..-.| +++| -.+-+.+..-.+.||++. .|......+ -|.=|+|+++.+..
T Consensus 42 ~~~~i~~~l~N~~~~~l~~~~v~a~V-~~~~~~k~~~~~~~~~~~mAPNS~f~~~i~~~~~-----~lk~G~Y~l~~~~~ 115 (140)
T PF11797_consen 42 GRNVIQANLQNPQPAILKKLTVDAKV-TKKGSKKVLYTFKKENMQMAPNSNFNFPIPLGGK-----KLKPGKYTLKITAK 115 (140)
T ss_pred CeeEEEEEEECCCchhhcCcEEEEEE-EECCCCeEEEEeeccCCEECCCCeEEeEecCCCc-----CccCCEEEEEEEEE
Confidence 45555566655544 6788888885 6555 345555655669999985 333333222 45558999999999
Q ss_pred eCCCCcEEEEEeceeeec
Q psy9193 107 DDDDAEHLKWEWTFEIKK 124 (128)
Q Consensus 107 DdD~~~~l~~ew~feI~K 124 (128)
.+++ ++.|+=.|.|..
T Consensus 116 ~~~~--~W~f~k~F~It~ 131 (140)
T PF11797_consen 116 SGKK--TWTFTKDFTITA 131 (140)
T ss_pred cCCc--EEEEEEEEEECH
Confidence 9888 445544677754
No 10
>smart00737 ML Domain involved in innate immunity and lipid metabolism. ML (MD-2-related lipid-recognition) is a novel domain identified in MD-1, MD-2, GM2A, Npc2 and multiple proteins of unknown function in plants, animals and fungi. These single-domain proteins were predicted to form a beta-rich fold containing multiple strands, and to mediate diverse biological functions through interacting with specific lipids.
Probab=72.69 E-value=29 Score=24.07 Aligned_cols=81 Identities=22% Similarity=0.272 Sum_probs=49.3
Q ss_pred eEEEEEEEEEEEEEcCCCceeEEEEEeeeccee--Eeecccc----eeeeeCCCC--CC--eeecCCCCCCCccceeeee
Q psy9193 29 LARGVYSVQSLFTDDDDAEHLKWVTLILLPLRF--AVDKMVH----MVGSYPPSL--EL--QSYTTPPEDAPSGMLARGV 98 (128)
Q Consensus 29 l~rg~Ysvk~~F~ddd~v~~L~y~q~~Vkr~Gi--~Vdk~~~----miGsy~P~~--e~--y~~~~~~eeaPsG~laRG~ 98 (128)
...+..++++.|+.+..+..|+..-. ++..|+ ++-.... .+|..=|-. +. |...++ .|+ .+-+|+
T Consensus 22 ~~g~~~~i~i~f~~~~~~~~~~~~v~-~~~~g~~ip~~~~~~d~C~~~~~~CPl~~G~~~~~~~~~~---v~~-~~P~~~ 96 (118)
T smart00737 22 VRGKTLTISISFTLNEDISKLKVVVH-VKIGGIEVPIPGETYDLCKLLGSKCPIEKGETVNYTNSLT---VPG-IFPPGK 96 (118)
T ss_pred CCCCEEEEEEEEEEcccceEEEEEEE-EEECCEEEeccCCCCCccccCCCCCCCCCCeeEEEEEeeE---ccc-cCCCeE
Confidence 33468899999999988888865443 467774 4432222 123333543 23 333332 222 445789
Q ss_pred eeeEEEEEeCCCCcEE
Q psy9193 99 YSVQSLFTDDDDAEHL 114 (128)
Q Consensus 99 Y~a~s~f~DdD~~~~l 114 (128)
|+++.+.+|+|+..+.
T Consensus 97 ~~v~~~l~d~~~~~i~ 112 (118)
T smart00737 97 YTVKWELTDEDGEELA 112 (118)
T ss_pred EEEEEEEEcCCCCEEE
Confidence 9999999998875543
No 11
>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO). F-box proteins contain a carboxy-terminal domain that interacts with protein substrates []. The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity [, , ].; PDB: 2F1E_A 1XVS_A 1TZA_A 1XQ4_D.
Probab=60.80 E-value=29 Score=24.19 Aligned_cols=79 Identities=23% Similarity=0.243 Sum_probs=43.2
Q ss_pred CCCCccceEEEEEEEEEEEEEcCCCceeEEEEEeeecce-eEeecccceeeeeC---CCCCCeeecCC-CCCCCccceee
Q psy9193 22 EDAPSGMLARGVYSVQSLFTDDDDAEHLKWVTLILLPLR-FAVDKMVHMVGSYP---PSLELQSYTTP-PEDAPSGMLAR 96 (128)
Q Consensus 22 eeaPsG~l~rg~Ysvk~~F~ddd~v~~L~y~q~~Vkr~G-i~Vdk~~~miGsy~---P~~e~y~~~~~-~eeaPsG~laR 96 (128)
...|..--.-=.|+|+|.=.-+..+.-|.=.|.|.-..| +..-.-+-.||.++ |.+ .+++.+- .=.+|.|. ++
T Consensus 4 ~S~p~~~~y~f~Y~I~I~N~~~~~vqL~sR~W~I~d~~g~~~~V~G~GVVG~~P~L~pGe-~f~Y~S~~~l~t~~G~-M~ 81 (90)
T PF04379_consen 4 QSDPSQNRYVFAYRIRIENHSDESVQLLSRHWIITDADGHVEEVEGEGVVGQQPVLAPGE-SFEYTSGCPLSTPSGS-ME 81 (90)
T ss_dssp G-BGGGTBEEEEEEEEEEE-SSS-EEEEEEEEEEEETTS-EEEEEEESBTTB--EE-TTE-EEEEEEEEEESSSEEE-EE
T ss_pred ccCCCCCeEEEEEEEEEEECCCCCEEEEccEEEEEeCCCCEEEEECCceEccCceECCCC-cEEEcCCCCcCCCCEE-EE
Confidence 344444444457888888333333555666666534444 33233445678777 555 5555543 45568888 89
Q ss_pred eeeeeE
Q psy9193 97 GVYSVQ 102 (128)
Q Consensus 97 G~Y~a~ 102 (128)
|+|...
T Consensus 82 G~y~~~ 87 (90)
T PF04379_consen 82 GSYTMV 87 (90)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999754
No 12
>cd00258 GM2-AP GM2 activator protein (GM2-AP) is a non-enzymatic lysosomal protein that acts as cofactor in the sequential degradation of gangliosides. GM2A is an essential cofactor for beta-hexosaminidase A (Hex A) in the enzymatic hydrolysis of GM2 ganglioside to GM3. Mutation of the gene results in the AB variant of Tay-Sachs disease. GM2-AP and similar proteins belong to the ML domain family.
Probab=59.16 E-value=25 Score=27.44 Aligned_cols=39 Identities=28% Similarity=0.444 Sum_probs=28.3
Q ss_pred cCCCCCCCccceeeeeeeeEEEEEeCCCCcEEEEEeceeee
Q psy9193 83 TTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFEIK 123 (128)
Q Consensus 83 ~~~~eeaPsG~laRG~Y~a~s~f~DdD~~~~l~~ew~feI~ 123 (128)
..|.-+-| .+|.+|+|+++..- +.+++++-=.+-+|+++
T Consensus 122 ~lP~~~LP-s~l~~G~Y~i~~~l-~~~g~~l~C~~~~~sL~ 160 (162)
T cd00258 122 TLPNVDLP-SWLTNGNYRITGIL-MADGKELGCGKFTFSLE 160 (162)
T ss_pred ecccccCC-CccCCCcEEEEEEE-CCCCCEEEEEEEEEEEe
Confidence 45555556 79999999999965 77786666566666654
No 13
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=52.15 E-value=95 Score=22.97 Aligned_cols=91 Identities=21% Similarity=0.191 Sum_probs=49.7
Q ss_pred CCCCCCCccceEEEEEEEEEEEEEcCCCceeEEEEEeeecce-eEeecccceeeeeC---CCCCCeeecCC-CCCCCccc
Q psy9193 19 TPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWVTLILLPLR-FAVDKMVHMVGSYP---PSLELQSYTTP-PEDAPSGM 93 (128)
Q Consensus 19 ~p~eeaPsG~l~rg~Ysvk~~F~ddd~v~~L~y~q~~Vkr~G-i~Vdk~~~miGsy~---P~~e~y~~~~~-~eeaPsG~ 93 (128)
.|+..+|.--..-=.|+|+|.=.-+..+.-|.=.|.|.--.| +..-.-+-.||.++ |.+ .+++.+- .=.+|.|.
T Consensus 18 ~~e~S~p~~~~y~f~Y~ItI~N~~~~~vQL~~R~W~I~d~~g~~~~V~G~GVVG~qP~L~PGe-~F~Y~S~~~l~tp~G~ 96 (127)
T PRK05461 18 LEEQSDPEEGRYVFAYTITIENLGRVPVQLLSRHWLITDANGRVQEVRGEGVVGEQPVLAPGE-SFEYTSGAVLETPSGT 96 (127)
T ss_pred CcccCCCcCCEEEEEEEEEEEECCCCCEEEEeeeEEEEECCCCEEEEECCceecCCceECCCC-CeEEeCCCCccCCCEE
Confidence 555566644444456777775322222333344444311112 22222344688887 554 5666643 44579998
Q ss_pred eeeeeeeeEEEEEeCCCCcEEEE
Q psy9193 94 LARGVYSVQSLFTDDDDAEHLKW 116 (128)
Q Consensus 94 laRG~Y~a~s~f~DdD~~~~l~~ 116 (128)
++|+|.+. ++|| +.++.
T Consensus 97 -M~G~y~~~----~~~G-~~F~v 113 (127)
T PRK05461 97 -MQGHYQMV----DEDG-ERFEV 113 (127)
T ss_pred -EEEEEEEE----eCCC-CEEEE
Confidence 79999975 6777 44443
No 14
>cd01759 PLAT_PL PLAT/LH2 domain of pancreatic triglyceride lipase. Lipases hydrolyze phospholipids and triglycerides to generate fatty acids for energy production or for storage and to release inositol phosphates that act as second messengers. The central role of triglyceride lipases is in energy production. The proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.
Probab=44.20 E-value=1.2e+02 Score=21.92 Aligned_cols=44 Identities=14% Similarity=0.103 Sum_probs=26.3
Q ss_pred EEEEEEEEEEcCCCceeEEEEEeeecceeEeecccceeeeeCCCCC
Q psy9193 33 VYSVQSLFTDDDDAEHLKWVTLILLPLRFAVDKMVHMVGSYPPSLE 78 (128)
Q Consensus 33 ~Ysvk~~F~ddd~v~~L~y~q~~Vkr~Gi~Vdk~~~miGsy~P~~e 78 (128)
+|.++++|...+++.+-=++... -.+|.. ...+...|++.|+..
T Consensus 2 ~Yqv~V~~s~~~~~~g~~~vsL~-G~~g~s-~~~~i~~g~l~pg~t 45 (113)
T cd01759 2 RYKVSVTLSGKKKVTGTILVSLY-GNKGNT-RQYEIFKGTLKPGNT 45 (113)
T ss_pred eEEEEEEEecccccCceEEEEEE-cCCCCc-cceEEEeeeecCCCE
Confidence 69999999887665543333332 233333 444555777777753
No 15
>PF02494 HYR: HYR domain; InterPro: IPR003410 This domain is known as the HYR (Hyalin Repeat) domain, after the protein hyalin that is composed exclusively of this repeat. This domain probably corresponds to a new superfamily in the immunoglobulin fold. The function of this domain is uncertain it may be involved in cell adhesion. In the Sushi repeat-containing protein (SrpX), this domain is found between two sushi repeats.
Probab=39.44 E-value=85 Score=20.34 Aligned_cols=30 Identities=17% Similarity=0.246 Sum_probs=23.5
Q ss_pred CCCCccceeeeeeeeEEEEEeCCCCcEEEEE
Q psy9193 87 EDAPSGMLARGVYSVQSLFTDDDDAEHLKWE 117 (128)
Q Consensus 87 eeaPsG~laRG~Y~a~s~f~DdD~~~~l~~e 117 (128)
...|+..|.-|.|.++-+.+|..|+.- +..
T Consensus 47 ~~~~g~~f~~G~t~V~ytA~D~~GN~a-~C~ 76 (81)
T PF02494_consen 47 NHPPGDLFPVGTTTVTYTATDAAGNSA-TCS 76 (81)
T ss_pred cCCCCceEeeceEEEEEEEEECCCCEE-EEE
Confidence 345677889999999999999988654 443
No 16
>PF13752 DUF4165: Domain of unknown function (DUF4165)
Probab=39.35 E-value=46 Score=24.98 Aligned_cols=30 Identities=27% Similarity=0.505 Sum_probs=27.2
Q ss_pred eeeeeeeeEEEEEeCCCCcEEEEEeceeee
Q psy9193 94 LARGVYSVQSLFTDDDDAEHLKWEWTFEIK 123 (128)
Q Consensus 94 laRG~Y~a~s~f~DdD~~~~l~~ew~feI~ 123 (128)
|.-|.|++++-..|-+++..-++++.|-|-
T Consensus 91 l~dG~ytvk~eiL~s~g~vV~t~s~~~~ID 120 (124)
T PF13752_consen 91 LGDGTYTVKSEILDSQGTVVQTYSYPFTID 120 (124)
T ss_pred CCCCcEEEEEEeeccCCCEEEeeeEeEEEe
Confidence 467999999999999999999999998874
No 17
>smart00697 DM8 Repeats found in several Drosophila proteins.
Probab=38.96 E-value=76 Score=20.63 Aligned_cols=38 Identities=16% Similarity=0.106 Sum_probs=28.7
Q ss_pred cCCCCCCCccceeeeeeeeEEEEEeCCCCcEEEEEeceee
Q psy9193 83 TTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFEI 122 (128)
Q Consensus 83 ~~~~eeaPsG~laRG~Y~a~s~f~DdD~~~~l~~ew~feI 122 (128)
.++++.-| -+|-.|.|.+...|+.++. .....+..+.+
T Consensus 55 ~l~~~~~p-~~lP~G~y~~~~~~~~~~~-~~~~~~~~~~~ 92 (93)
T smart00697 55 RLDENLLP-SFLPDGDYRLNLTFFFGKI-KVKGRVVYFTL 92 (93)
T ss_pred EeCcccCC-ccCCCeeEEEEEEEEcCcc-cceeeEEEEEe
Confidence 45567778 4788999999999997765 66666666554
No 18
>PF04584 Pox_A28: Poxvirus A28 family; InterPro: IPR007664 The poxvirus A28 protein is expressed at late times during the virus replication cycle and is a membrane component of the intracellular mature virion. Repression of A28 inhibits cell-to-cell spread, suggesting that all poxviruses use a common A28-dependent mechanism of cell penetration []. An N-terminal hydrophobic sequence, present in all poxvirus A28 orthologues, anchors the protein in the virion surface membrane so that most of it is exposed to the cytoplasm [].; GO: 0016032 viral reproduction, 0019031 viral envelope
Probab=35.04 E-value=45 Score=25.53 Aligned_cols=60 Identities=18% Similarity=0.200 Sum_probs=44.6
Q ss_pred CCceeEEEEEeeecceeEeecccceeeeeCCCCCCeeecCCCCCCCccceeeeeeeeEEEE--EeCCCCcEEEE
Q psy9193 45 DAEHLKWVTLILLPLRFAVDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLF--TDDDDAEHLKW 116 (128)
Q Consensus 45 ~v~~L~y~q~~Vkr~Gi~Vdk~~~miGsy~P~~e~y~~~~~~eeaPsG~laRG~Y~a~s~f--~DdD~~~~l~~ 116 (128)
....|+|-.++ .|..+|++- |.|++++|.++--|-.+..+ +.|...|.| ..+++...+.|
T Consensus 39 ~~~~LEYskt~---g~~~iDr~V-----~DPND~~~DvkqKWRCv~~~----~~yvs~S~FGF~s~~~~~~~~f 100 (140)
T PF04584_consen 39 AHSALEYSKTI---GGNYIDRRV-----FDPNDEVYDVKQKWRCVKYN----NVYVSASEFGFKSNSGGNIRKF 100 (140)
T ss_pred hccceeEeecC---CCcccccee-----eCCCCcccChhhceEEEeeC----CeEEEEEecceEecCCCCceec
Confidence 35678887765 667788874 88999999888888877666 889999997 45555455554
No 19
>cd00915 MD-1_MD-2 MD-1 and MD-2 are cofactors required for LPS signaling through cell surface receptors. MD-2 and its binding partner, Toll-like receptor 4 (TLR4), are essential for the innate immune responses of mammalian cells to bacterial lipopolysaccharide (LPS); MD-2 directly binds the lipid A moiety of LPS. The TLR4-like receptor, RP105, which mediates LPS-induced lymphocyte proliferation, interacts with MD-1; MD-1 enhances RP105-mediated LPS-induced growth of B cells. These proteins belong to the ML domain family.
Probab=29.27 E-value=2.4e+02 Score=21.01 Aligned_cols=80 Identities=14% Similarity=0.015 Sum_probs=53.9
Q ss_pred EEEEEEEEEEEEcCCCceeEEEEEeeecceeEeecccceee--------eeCCCC--CC--ee--ecCCCCCCCccceee
Q psy9193 31 RGVYSVQSLFTDDDDAEHLKWVTLILLPLRFAVDKMVHMVG--------SYPPSL--EL--QS--YTTPPEDAPSGMLAR 96 (128)
Q Consensus 31 rg~Ysvk~~F~ddd~v~~L~y~q~~Vkr~Gi~Vdk~~~miG--------sy~P~~--e~--y~--~~~~~eeaPsG~laR 96 (128)
+..+++.+.|+-...+..|...=. ..=.|+++=...+- | ++=|.. +. |. +.+|-..-| .
T Consensus 34 g~n~~I~~~f~~~~d~~~L~~~v~-~~~~g~~lP~~~e~-~C~~g~~~~s~CP~~kGet~~Y~~p~slpi~~yP-----~ 106 (130)
T cd00915 34 GTNGFIRIKFILRRDIKELYFNLS-LNVNGIEVLTRSEI-ICHGYLDKYSFCGALKGETVYYVGPFSFKGILIP-----Q 106 (130)
T ss_pred CCcEEEEEEEEECcccceeEEEEE-EEECCccCCCCCcc-cccCCCcccccCCccCCceEEEeeeecccccccC-----C
Confidence 368999999999988888876654 36678554433333 5 666764 44 44 445555455 4
Q ss_pred eeeeeEEEEEeCCCCcEEEEE
Q psy9193 97 GVYSVQSLFTDDDDAEHLKWE 117 (128)
Q Consensus 97 G~Y~a~s~f~DdD~~~~l~~e 117 (128)
|+|.++-..+|+++..+.=|+
T Consensus 107 ~~y~V~weL~d~~~~~l~Cf~ 127 (130)
T cd00915 107 GQYRCVAELIVENRETVACAN 127 (130)
T ss_pred ccEEEEEEEECCCCCEEEEEE
Confidence 699999999998885544443
No 20
>COG2967 ApaG Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism]
Probab=29.20 E-value=2.5e+02 Score=21.14 Aligned_cols=87 Identities=26% Similarity=0.297 Sum_probs=52.2
Q ss_pred ccCCCCCCCccceEEEEEEEEEEEEEcCCCceeEEEEEeeecceeEee--cccceeeeeC---CCCCCeeecCC-CCCCC
Q psy9193 17 YTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWVTLILLPLRFAVD--KMVHMVGSYP---PSLELQSYTTP-PEDAP 90 (128)
Q Consensus 17 ~~~p~eeaPsG~l~rg~Ysvk~~F~ddd~v~~L~y~q~~Vkr~Gi~Vd--k~~~miGsy~---P~~e~y~~~~~-~eeaP 90 (128)
+-+++...|+-=.+-=-|+++|.=.-+..+.-|.=.|.| .-+-=+|+ .-+-.||.=+ |. +.|++++- +=++|
T Consensus 15 ~yleeQS~P~~~RyvfaYtitI~N~g~~~vqLlsR~W~I-Td~~g~v~eV~G~GVVGeQP~l~PG-~~y~YtSg~~l~Tp 92 (126)
T COG2967 15 RYLEEQSSPEEERYVFAYTVTIRNLGEVPVQLLSRYWLI-TDGNGRVTEVEGEGVVGEQPLLAPG-EEYQYTSGCPLDTP 92 (126)
T ss_pred EEccccCCcccceEEEEEEEEEecCCCccceeeeeEEEE-ecCCCcEEEEEcCceeccccccCCC-CceEEcCCcCccCC
Confidence 345666677643333457777776665556666666665 33322222 2244566544 33 45666653 67889
Q ss_pred ccceeeeeeeeEEEEEeCCC
Q psy9193 91 SGMLARGVYSVQSLFTDDDD 110 (128)
Q Consensus 91 sG~laRG~Y~a~s~f~DdD~ 110 (128)
+|.| ||+|.+ .|+||
T Consensus 93 ~G~M-~GhY~M----~~e~G 107 (126)
T COG2967 93 SGTM-QGHYEM----IDEDG 107 (126)
T ss_pred cceE-EEEEEE----ecCCC
Confidence 9965 899987 57788
No 21
>PF04234 CopC: CopC domain; InterPro: IPR007348 CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule. Along with CopA, CopC mediates copper resistance by sequestration of copper in the periplasm [].; GO: 0005507 copper ion binding, 0046688 response to copper ion, 0042597 periplasmic space; PDB: 1IX2_B 1LYQ_A 2C9P_C 2C9R_A 2C9Q_A 1M42_A 1OT4_A 1NM4_A.
Probab=28.48 E-value=1.5e+02 Score=20.13 Aligned_cols=29 Identities=24% Similarity=0.440 Sum_probs=21.8
Q ss_pred eeeeeeeeEEEEEeCCCCcEEEEEeceeee
Q psy9193 94 LARGVYSVQSLFTDDDDAEHLKWEWTFEIK 123 (128)
Q Consensus 94 laRG~Y~a~s~f~DdD~~~~l~~ew~feI~ 123 (128)
|+-|.|++.=+.+-.|| --++=.++|.++
T Consensus 69 l~~G~YtV~wrvvs~DG-H~~~G~~~F~V~ 97 (97)
T PF04234_consen 69 LPPGTYTVSWRVVSADG-HPVSGSFSFTVK 97 (97)
T ss_dssp --SEEEEEEEEEEETTS-CEEEEEEEEEE-
T ss_pred CCCceEEEEEEEEecCC-CCcCCEEEEEEC
Confidence 77799999999999999 556667777663
No 22
>PF15432 Sec-ASP3: Accessory Sec secretory system ASP3
Probab=27.85 E-value=1.8e+02 Score=21.64 Aligned_cols=51 Identities=20% Similarity=0.227 Sum_probs=32.1
Q ss_pred ceEEE-EEEEEEEEEEcCC-CceeEEEEEeeecceeEeecccceeeeeCCCCCCeeecCCCC
Q psy9193 28 MLARG-VYSVQSLFTDDDD-AEHLKWVTLILLPLRFAVDKMVHMVGSYPPSLELQSYTTPPE 87 (128)
Q Consensus 28 ~l~rg-~Ysvk~~F~ddd~-v~~L~y~q~~Vkr~Gi~Vdk~~~miGsy~P~~e~y~~~~~~e 87 (128)
+|.|| +|.+.+.+..... ...|+..-- |+..+.|+..-=+...-.++.|.+
T Consensus 49 lLk~G~~Y~l~~~~~~~P~~svylki~F~---------dr~~e~i~~~i~k~~~~~F~yP~~ 101 (128)
T PF15432_consen 49 LLKRGHTYQLKFNIDVVPENSVYLKIIFF---------DRQGEEIEEQIIKNDSFEFTYPEE 101 (128)
T ss_pred EecCCCEEEEEEEEEEccCCeEEEEEEEE---------ccCCCEeeEEEEecCceEEeCCCC
Confidence 34465 8999999988844 456655532 555666666655555556666654
No 23
>KOG1690|consensus
Probab=27.63 E-value=46 Score=27.11 Aligned_cols=19 Identities=32% Similarity=0.560 Sum_probs=16.8
Q ss_pred CCCCCccceEEEEEEEEEE
Q psy9193 21 PEDAPSGMLARGVYSVQSL 39 (128)
Q Consensus 21 ~eeaPsG~l~rg~Ysvk~~ 39 (128)
.+|+|.|+|..|.|++.+.
T Consensus 34 ~eelpk~tmv~G~yk~qly 52 (215)
T KOG1690|consen 34 IEELPKGTMVTGNYKAQLY 52 (215)
T ss_pred hhhCCCCcEEEeeeeeeee
Confidence 5899999999999998753
No 24
>PF11850 DUF3370: Protein of unknown function (DUF3370); InterPro: IPR021801 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 452 to 532 amino acids in length.
Probab=26.54 E-value=1.1e+02 Score=27.43 Aligned_cols=63 Identities=19% Similarity=0.329 Sum_probs=41.4
Q ss_pred CccceEEEEEEEEEEEEEcCCCceeEEEEEeeecceeEeecccceeeeeC--CCCC---CeeecCCCCCCCccce
Q psy9193 25 PSGMLARGVYSVQSLFTDDDDAEHLKWVTLILLPLRFAVDKMVHMVGSYP--PSLE---LQSYTTPPEDAPSGML 94 (128)
Q Consensus 25 PsG~l~rg~Ysvk~~F~ddd~v~~L~y~q~~Vkr~Gi~Vdk~~~miGsy~--P~~e---~y~~~~~~eeaPsG~l 94 (128)
+.-.+|||+ |+++|.||.+..--+|.+. |-|.|=. .+-|++.. |.+. .-.+.-|+|-+|.=.|
T Consensus 368 ~~~vfFRGt--Vrv~y~d~~g~~~~r~vHL-vqRrGQ~----g~pL~~l~l~Pge~r~V~V~~lYPpDATPPQVL 435 (441)
T PF11850_consen 368 AGFVFFRGT--VRVRYKDDQGQPQTRYVHL-VQRRGQQ----GEPLVTLNLKPGEQRLVRVDFLYPPDATPPQVL 435 (441)
T ss_pred CCceeEeee--EEEEeccCCCCcceeEEEE-EEecCCc----CCcceEEEcCCCCcceEEEEEEcCCCCCCCceE
Confidence 445566885 7889999987767799998 5887642 33455443 5543 1334458888886554
No 25
>PF04787 Pox_H7: Late protein H7; InterPro: IPR006872 This is a family of poxvirus late H7 proteins.
Probab=24.87 E-value=58 Score=25.10 Aligned_cols=25 Identities=16% Similarity=0.339 Sum_probs=21.9
Q ss_pred eeeeeeeEEEE-EeCCCCcEEEEEec
Q psy9193 95 ARGVYSVQSLF-TDDDDAEHLKWEWT 119 (128)
Q Consensus 95 aRG~Y~a~s~f-~DdD~~~~l~~ew~ 119 (128)
.||..+....| +|+|++..++|+|.
T Consensus 29 L~~~~P~~tifsid~~g~f~iDF~Yd 54 (147)
T PF04787_consen 29 LLNKHPNDTIFSIDEDGKFFIDFEYD 54 (147)
T ss_pred HhcCCCcceeeeEcCCCCEEEEeeeC
Confidence 46888899999 99999999999983
No 26
>PF06155 DUF971: Protein of unknown function (DUF971); InterPro: IPR010376 This domain is found in gamma-butyrobetaine dioxygenase and trimethyllysine dioxygenase proteins.; PDB: 2L6N_A 3LUU_A 2L6P_A 3MS5_A 3O2G_A 3N6W_A.
Probab=24.74 E-value=16 Score=24.68 Aligned_cols=38 Identities=26% Similarity=0.678 Sum_probs=28.2
Q ss_pred eecCCCCCCCccceeeeeeeeEEEEEeCCCCcEEEEEe
Q psy9193 81 SYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEW 118 (128)
Q Consensus 81 ~~~~~~eeaPsG~laRG~Y~a~s~f~DdD~~~~l~~ew 118 (128)
....|.+-.|..+-.-|.|.+...|-|+...-+.+|+|
T Consensus 50 ~~~~~~~v~~~~i~~~G~y~l~i~WsDGH~sgiY~~~~ 87 (89)
T PF06155_consen 50 TADIPPDVRPKSIEPVGNYALRITWSDGHDSGIYPWEW 87 (89)
T ss_dssp --GCGTTTTEEEEEEETTTEEEEEETTSB---EEEHHH
T ss_pred ccccCCCceEeEEEECCCCEEEEEECCCCceeEecHHH
Confidence 44678899999998889999999998777655777766
No 27
>KOG4038|consensus
Probab=22.88 E-value=11 Score=28.59 Aligned_cols=86 Identities=16% Similarity=0.211 Sum_probs=60.2
Q ss_pred CCCccceEEEEEEEEEEEEEcCCCceeEEEEEeeecceeEeecccceeeeeCCCCCCeeecCCCCCCCcc-----ceeee
Q psy9193 23 DAPSGMLARGVYSVQSLFTDDDDAEHLKWVTLILLPLRFAVDKMVHMVGSYPPSLELQSYTTPPEDAPSG-----MLARG 97 (128)
Q Consensus 23 eaPsG~l~rg~Ysvk~~F~ddd~v~~L~y~q~~Vkr~Gi~Vdk~~~miGsy~P~~e~y~~~~~~eeaPsG-----~laRG 97 (128)
-.|+.+|-.-.-+-.+-|.-....+.++..|. |+=+|-.+..==..+|=-.|+... ++..-.|-||.. ...-|
T Consensus 48 rvpkkilkcravsreinfss~e~mekfrleqk-vyfkg~i~eewffefgfvipnstn-twqs~ieaapesqmmpasvl~g 125 (150)
T KOG4038|consen 48 RVPKKILKCRAVSREINFSSIESMEKFRLEQK-VYFKGRIMEEWFFEFGFVIPNSTN-TWQSTIEAAPESQMMPASVLNG 125 (150)
T ss_pred cccHHHHhhHhhhhhcccchHHHHHhhhhhhe-eeecceeHHHhhhhhceeccCCcc-hHHHHHhhCchhccCChhhccC
Confidence 45777777555555677877778899999999 588887776666667877788642 222223444433 23469
Q ss_pred eeeeEEEEEeCCC
Q psy9193 98 VYSVQSLFTDDDD 110 (128)
Q Consensus 98 ~Y~a~s~f~DdD~ 110 (128)
.-.+...|+|+|-
T Consensus 126 nv~iet~fyd~dl 138 (150)
T KOG4038|consen 126 NVTIETSFYDNDL 138 (150)
T ss_pred ceEEEEEEecCCE
Confidence 9999999999985
No 28
>PF00379 Chitin_bind_4: Insect cuticle protein; InterPro: IPR000618 Insect cuticle is composed of proteins and chitin. The cuticular proteins seem to be specific to the type of cuticle (flexible or stiff) that occur at stages of the insect development. The proteins found in the flexible cuticle of larva and pupa of different insects share a conserved C-terminal section [] such a region is also found in the soft endocuticle of adults insects [] as well as in other cuticular proteins including in arachnids []. In addition, cuticular proteins share hydrophobic regions dominated by tetrapeptide repeats (A-A-P-A/V), which are presumed to be functionally important [, ]. Many insect cuticle proteins also include a 35-36 amino acid motif known as the R and R consensus. An extended form of this motif has been shown [] to bind chitin. It has no sequence similiarity to the cysteine-containing chitin-binding domain of chitinases and some peritrophic membrane proteins, suggesting that arthropods have two distinct classes of chitin-binding proteins, those with the chitin-binding domains found in lectins, chitinases and peritrophic membranes (cysCBD), and those with the type of chitin-binding domains found in cuticular proteins (non-cysCBD) []. The cuticle protein signature has been found in locust cuticle proteins 7 (LM-7), 8 (LM-8), 19 (LM-19) and endocuticle structural glycoprotein ABD-4; Hyalophora cecropia (Cecropia moth) cuticle proteins 12 and 66; Drosophila melanogaster (Fruit fly) larval cuticles proteins I, II, III and IV (LCP1 to LCP4); drosophila pupal cuticle proteins PCP, EDG-78E and EDG-84E; Manduca sexta (Tobacco hawkmoth) cuticle protein LCP-14; Tenebrio molitor (Yellow mealworm) cuticle proteins ACP-20, A1A, A2B and A3A; and Araneus diadematus (Spider) cuticle proteins ACP 11.9, ACP 12.4, ACP 12.6, ACP 15.5 and ACP 15.7.; GO: 0042302 structural constituent of cuticle
Probab=22.85 E-value=1.9e+02 Score=17.48 Aligned_cols=29 Identities=31% Similarity=0.575 Sum_probs=19.4
Q ss_pred CCCCCccceeeeeeeeEEEEEeCCCCcEEEEEec
Q psy9193 86 PEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWT 119 (128)
Q Consensus 86 ~eeaPsG~laRG~Y~a~s~f~DdD~~~~l~~ew~ 119 (128)
.++...+--.||+|. |+|+|+ ...+++|.
T Consensus 18 ~~~~~~~~~v~GsY~----y~~pdG-~~~~V~Y~ 46 (52)
T PF00379_consen 18 PETEDEGGVVRGSYS----YIDPDG-QTRTVTYV 46 (52)
T ss_pred cccCCCCCEEEEEEE----EECCCC-CEEEEEEE
Confidence 344456666778885 688888 56666664
No 29
>PF13511 DUF4124: Domain of unknown function (DUF4124)
Probab=22.57 E-value=57 Score=20.06 Aligned_cols=13 Identities=15% Similarity=0.350 Sum_probs=10.4
Q ss_pred EEEEeCCCCcEEE
Q psy9193 103 SLFTDDDDAEHLK 115 (128)
Q Consensus 103 s~f~DdD~~~~l~ 115 (128)
-+.+|++|++|++
T Consensus 16 Yk~~D~~G~v~ys 28 (60)
T PF13511_consen 16 YKWVDENGVVHYS 28 (60)
T ss_pred EEEECCCCCEEEC
Confidence 3678999998875
No 30
>cd00912 ML The ML (MD-2-related lipid-recognition) domain is present in MD-1, MD-2, GM2 activator protein, Niemann-Pick type C2 (Npc2) protein, phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP), mite allergen Der p 2 and several proteins of unknown function in plants, animals and fungi. These single-domain proteins form two anti-parallel beta-pleated sheets stabilized by three disulfide bonds and with an accessible central hydrophobic cavity, and are predicted to mediate diverse biological functions through interaction with specific lipids.
Probab=21.43 E-value=3e+02 Score=19.30 Aligned_cols=90 Identities=18% Similarity=0.105 Sum_probs=56.5
Q ss_pred CCCCccceEEEEEEEEEEEEEcCCCceeEEEEEeeecceeEeecc---cce--e----eeeCCCC--CCeeecCCCCCCC
Q psy9193 22 EDAPSGMLARGVYSVQSLFTDDDDAEHLKWVTLILLPLRFAVDKM---VHM--V----GSYPPSL--ELQSYTTPPEDAP 90 (128)
Q Consensus 22 eeaPsG~l~rg~Ysvk~~F~ddd~v~~L~y~q~~Vkr~Gi~Vdk~---~~m--i----Gsy~P~~--e~y~~~~~~eeaP 90 (128)
+++|=-+...+..++.+.|+.+..+..|+..=. ++..||++-.. .-. . +..=|-. +.|.+.... ..|
T Consensus 20 ~~~pC~~~~g~~~~i~~~f~~~~~~~~~~~~v~-~~~~gi~~p~~~~~~d~C~~~~~~~~~CPl~~G~~~~~~~~~-~v~ 97 (127)
T cd00912 20 DPLPCPDHRGGNYNLSVTGTLREDIKSLYVDLA-LMSQGIKVLNPDNSYDFCEAGLPKPSFCPLRKGQQYSYAKTV-NVP 97 (127)
T ss_pred CCCCCcccCCCeEEEEEEEEECccccEEEEEEE-EEECCEEeccCCCCCCcccccCcccccCCcCCCCEEEEEEEE-ecC
Confidence 334444444579999999999988888865544 58889886542 211 1 3344554 344444322 244
Q ss_pred ccceeeeeeeeEEEEEeCCCCcE
Q psy9193 91 SGMLARGVYSVQSLFTDDDDAEH 113 (128)
Q Consensus 91 sG~laRG~Y~a~s~f~DdD~~~~ 113 (128)
+=.+.++.|.++..-+|+|+..+
T Consensus 98 ~~~~P~~~~~v~~~l~~~~~~~v 120 (127)
T cd00912 98 EFTIPTIEYQVVLEDVTDKGEVL 120 (127)
T ss_pred cccCCCeeEEEEEEEEcCCCCEE
Confidence 34567789999999999887543
No 31
>COG5514 Uncharacterized conserved protein [Function unknown]
Probab=20.52 E-value=1.4e+02 Score=24.03 Aligned_cols=38 Identities=16% Similarity=0.135 Sum_probs=29.5
Q ss_pred CCCCccceEEEEEEEEEEEEEcCC--------CceeEEEEEeeecce
Q psy9193 22 EDAPSGMLARGVYSVQSLFTDDDD--------AEHLKWVTLILLPLR 60 (128)
Q Consensus 22 eeaPsG~l~rg~Ysvk~~F~ddd~--------v~~L~y~q~~Vkr~G 60 (128)
...|.|=-+|.-|.=+++|.+-+. +++|+|++. |-|.|
T Consensus 51 s~v~~G~~a~~py~E~i~~~~~~~aTNas~Q~Lv~~~Yh~~-vfr~~ 96 (203)
T COG5514 51 SNVGNGGPARRPYRERIRMDAIDPATNASPQLLVGLRYHSH-VFRPG 96 (203)
T ss_pred CCCCCCCccccceeEEEEeccCCcccCCCcceeEEEeeeee-ccccc
Confidence 356778888999999999987532 468999999 58776
Done!