Query psy9193
Match_columns 128
No_of_seqs 145 out of 411
Neff 4.9
Searched_HMMs 29240
Date Fri Aug 16 21:17:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9193.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9193hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1kmt_A RHO GDP-dissociation in 100.0 5.2E-47 1.8E-51 284.3 11.1 102 26-128 35-141 (141)
2 1ds6_B RHO GDP-dissociation in 100.0 2.4E-45 8.1E-50 284.6 10.5 96 32-128 84-180 (180)
3 1doa_B RHO GDI 1, protein (GDP 100.0 1.1E-44 3.8E-49 287.8 10.8 102 26-128 113-219 (219)
4 1kmt_A RHO GDP-dissociation in 99.8 3.8E-21 1.3E-25 143.9 4.4 54 2-55 80-133 (141)
5 1ds6_B RHO GDP-dissociation in 99.8 2.7E-20 9.3E-25 144.1 4.5 54 2-55 119-172 (180)
6 1doa_B RHO GDI 1, protein (GDP 99.8 7.4E-20 2.5E-24 145.3 4.5 54 2-55 158-211 (219)
7 3t5g_B Retinal ROD rhodopsin-s 90.6 1 3.5E-05 33.7 7.2 89 24-113 51-143 (152)
8 2ag4_A GM2-AP, ganglioside GM2 79.4 3 0.0001 30.6 4.9 40 82-123 123-162 (164)
9 1tza_A APAG protein, SOR45; st 76.0 9.8 0.00034 27.5 6.8 92 19-117 17-113 (134)
10 1xq4_A Protein APAG; all beta 75.8 11 0.00039 27.3 7.1 91 19-117 22-118 (139)
11 1xvs_A Protein APAG; MCSG APC2 73.4 17 0.00058 25.9 7.4 92 19-117 17-113 (126)
12 2f1e_A Protein APAG; APAG prot 68.1 29 0.001 24.6 8.7 92 19-117 18-114 (127)
13 3nqz_A MCP-02, secreted metall 67.6 5.9 0.0002 29.2 4.0 37 31-70 37-73 (180)
14 4goj_C Protein UNC-119 homolog 66.7 4.4 0.00015 32.3 3.3 76 33-110 142-225 (240)
15 1nep_A EPV20, BNPC2, epididyma 60.1 39 0.0013 23.3 7.6 97 21-123 22-129 (130)
16 2r5o_A Putative ATP binding co 51.6 65 0.0022 23.2 7.8 95 21-119 58-160 (188)
17 3bal_A Acetylacetone-cleaving 43.7 22 0.00074 26.0 3.6 84 32-119 45-139 (153)
18 1xwv_A DER F II; beta sheets, 39.0 92 0.0032 21.3 6.7 95 23-124 23-129 (129)
19 2le2_A P56; UDG inhibition, DN 32.4 44 0.0015 20.6 3.1 22 97-118 8-29 (56)
20 2c4x_A Endoglucanase, ctcel9D- 32.0 1.7E+02 0.0059 22.7 7.3 18 31-48 68-85 (260)
21 2ich_A Putative ATTH; structur 30.7 85 0.0029 25.4 5.5 50 71-121 1-50 (335)
22 3gqq_A Protein UNC-119 homolog 28.8 80 0.0027 24.3 4.7 94 25-119 89-190 (195)
23 1b69_A Protein (integrase); in 28.3 51 0.0018 21.3 3.0 31 89-121 11-43 (69)
24 2ag4_A GM2-AP, ganglioside GM2 27.4 86 0.0029 22.6 4.5 28 17-45 123-150 (164)
25 4ejq_A Kinesin-like protein KI 26.8 52 0.0018 23.4 3.2 45 57-101 17-65 (154)
26 2bn8_A CEDA, cell division act 25.9 38 0.0013 22.6 2.1 38 65-102 14-53 (87)
27 2kyw_A Adhesion exoprotein; st 24.9 43 0.0015 22.5 2.2 12 100-111 4-15 (87)
28 4asl_A EPA1P; cell adhesion, l 22.8 77 0.0026 24.0 3.7 29 93-121 198-227 (259)
29 2y72_A Collagenase, collagenas 21.7 1.5E+02 0.0053 18.4 4.9 17 96-112 58-74 (85)
30 2v2f_A Penicillin binding prot 21.2 45 0.0015 16.8 1.4 16 101-116 5-20 (26)
No 1
>1kmt_A RHO GDP-dissociation inhibitor 1; immunoglobulin fold, beta sandwich motif, isoprenyl-binding, protein binding; 1.30A {Homo sapiens} SCOP: b.1.18.8 PDB: 2jhu_A 2jhv_A 2jhw_A 1ft3_A 1ft0_A 1qvy_A 2jhz_A 2bxw_A 2jhx_A 2jhy_A 1rho_A 1fso_A 2ji0_A 2jhs_A* 2jht_A 1ajw_A 1gdf_A
Probab=100.00 E-value=5.2e-47 Score=284.26 Aligned_cols=102 Identities=40% Similarity=0.706 Sum_probs=95.0
Q ss_pred ccceE----EEEEEEEEEEEEcCC-CceeEEEEEeeecceeEeecccceeeeeCCCCCCeeecCCCCCCCccceeeeeee
Q psy9193 26 SGMLA----RGVYSVQSLFTDDDD-AEHLKWVTLILLPLRFAVDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYS 100 (128)
Q Consensus 26 sG~l~----rg~Ysvk~~F~ddd~-v~~L~y~q~~Vkr~Gi~Vdk~~~miGsy~P~~e~y~~~~~~eeaPsG~laRG~Y~ 100 (128)
+...+ .+.|+++++|+|+++ ++||+|+|+ |||+||+||++++|||||+|++++|+++||+|||||||||||+|+
T Consensus 35 k~~~f~iKEG~~Y~iki~F~V~~eivsGLkY~q~-v~r~Gi~Vdk~~~mlGsy~P~~e~y~~~~~~eeaPsG~laRG~Y~ 113 (141)
T 1kmt_A 35 KKQSFVLKEGVEYRIKISFRVNREIVSGMKYIQH-TYRKGVKIDKTDYMVGSYGPRAAAYEFLTPVEEAPKGMLARGSYS 113 (141)
T ss_dssp GGCCEEEETTCEEEEEEEEEECSSCEEEEEEEEE-EEETTEEEEEEEEEEEEECCCSSCEEEECCCEECCCSTTTCEEEE
T ss_pred ccCceEccCCcEEEEEEEEEEccccccCcEEEEE-EEECCEEECcceEeeeccCCCCCcceecCCCccCCceeEEeeeee
Confidence 44544 389999999999966 799999999 699999999999999999999999999999999999999999999
Q ss_pred eEEEEEeCCCCcEEEEEeceeeecCCCC
Q psy9193 101 VQSLFTDDDDAEHLKWEWTFEIKKSWKD 128 (128)
Q Consensus 101 a~s~f~DdD~~~~l~~ew~feI~K~W~~ 128 (128)
|+|+|+|||+++||+|+|+|+|+|+|+|
T Consensus 114 a~s~F~DDD~~~hl~~~w~feI~KdW~~ 141 (141)
T 1kmt_A 114 IKSRFTDDDKTDHLSWEWNLTIKKDWKD 141 (141)
T ss_dssp EEEEEECTTCCCSEEEEEEEEEESCC--
T ss_pred eeEEEEcCCCcEEEEEEEeEEEecCCCC
Confidence 9999999999999999999999999986
No 2
>1ds6_B RHO GDP-dissociation inhibitor 2; beta sandwhich, protein-protein complex, G-domain, immunoglobulin fold, walker fold, GTP-binding protein; HET: GDP; 2.35A {Homo sapiens} SCOP: b.1.18.8 PDB: 1fst_A
Probab=100.00 E-value=2.4e-45 Score=284.59 Aligned_cols=96 Identities=46% Similarity=0.794 Sum_probs=92.8
Q ss_pred EEEEEEEEEEEcCC-CceeEEEEEeeecceeEeecccceeeeeCCCCCCeeecCCCCCCCccceeeeeeeeEEEEEeCCC
Q psy9193 32 GVYSVQSLFTDDDD-AEHLKWVTLILLPLRFAVDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDD 110 (128)
Q Consensus 32 g~Ysvk~~F~ddd~-v~~L~y~q~~Vkr~Gi~Vdk~~~miGsy~P~~e~y~~~~~~eeaPsG~laRG~Y~a~s~f~DdD~ 110 (128)
+.|+++++|+|+++ ++||+|+|+ |||+||+||++++|||||+|++++|+++||+|||||||||||+|+|+|+|+|||+
T Consensus 84 s~Y~iki~F~V~~eivsGLkY~q~-v~r~Gi~Vdk~~~mlGsy~P~~e~y~~~~p~eeaPsG~laRG~Y~a~skF~DDD~ 162 (180)
T 1ds6_B 84 SEYRVKIHFKVNRDIVSGLKYVQH-TYRTGVKVDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFTDDDK 162 (180)
T ss_dssp CEEEEEEEECCCSSCEEEEEEEEE-EEETTEEEEEEEEEEEEECCCSSCEEEECCCEECCCSTTTCEEEEEEEEEECTTC
T ss_pred cEEEEEEEEEEecccccCcEEEEE-EEECCEEECCceEeeeccCCCCCceeecCCCccCCcceeeeeeeeeeEEEEcCCC
Confidence 79999999999965 799999999 6999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEeceeeecCCCC
Q psy9193 111 AEHLKWEWTFEIKKSWKD 128 (128)
Q Consensus 111 ~~~l~~ew~feI~K~W~~ 128 (128)
++||+|+|+|+|+|+|+|
T Consensus 163 ~~hl~~~wsfeI~KdW~~ 180 (180)
T 1ds6_B 163 QDHLSWEWNLSIKKEWGE 180 (180)
T ss_dssp CCCEEEEEEEEEESSCC-
T ss_pred ceEEEEEEEEEEeeCCCC
Confidence 999999999999999986
No 3
>1doa_B RHO GDI 1, protein (GDP-dissociation inhibitor 1); GTP-binding protein, CDC42, cell cycle; HET: GDP GER; 2.60A {Bos taurus} SCOP: b.1.18.8 PDB: 1hh4_D* 1cc0_E*
Probab=100.00 E-value=1.1e-44 Score=287.76 Aligned_cols=102 Identities=40% Similarity=0.702 Sum_probs=96.6
Q ss_pred ccceE----EEEEEEEEEEEEcCC-CceeEEEEEeeecceeEeecccceeeeeCCCCCCeeecCCCCCCCccceeeeeee
Q psy9193 26 SGMLA----RGVYSVQSLFTDDDD-AEHLKWVTLILLPLRFAVDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYS 100 (128)
Q Consensus 26 sG~l~----rg~Ysvk~~F~ddd~-v~~L~y~q~~Vkr~Gi~Vdk~~~miGsy~P~~e~y~~~~~~eeaPsG~laRG~Y~ 100 (128)
+...+ .+.|+++++|+|+++ ++||+|+|+ |||+||+||++++|||||+|++++|+++||+|||||||||||+|+
T Consensus 113 k~~~F~IKEGs~Y~lki~FkV~~eIVsGLkY~q~-VkR~GI~Vdk~~~MlGSY~P~~e~y~~~~p~EeAPSGmLARG~Y~ 191 (219)
T 1doa_B 113 KKQSFVLKEGVEYRIKISFRVNREIVSGMKYIQH-TYRKGVKIDKTDYMVGSYGPRAEEYEFLTPMEEAPKGMLARGSYN 191 (219)
T ss_dssp GGCCEEEETTCEEEEEEEECBCSSCEEEEEEEEE-EEETTEEEEEEEEEEEEECCCSSCEEEECCCEECCCTTSCCSEEE
T ss_pred cCCCEEecCCCEEEEEEEEEEecceecCcEEEEE-EEECCeEECCcceeeeccCCCCCcccccCCCccCCccceeeeeee
Confidence 55555 389999999999966 799999999 699999999999999999999999999999999999999999999
Q ss_pred eEEEEEeCCCCcEEEEEeceeeecCCCC
Q psy9193 101 VQSLFTDDDDAEHLKWEWTFEIKKSWKD 128 (128)
Q Consensus 101 a~s~f~DdD~~~~l~~ew~feI~K~W~~ 128 (128)
|+|+|+|||+++||+|+|+|+|+|+|+|
T Consensus 192 akSkF~DDD~~~hL~~eWsfeI~KdW~~ 219 (219)
T 1doa_B 192 IKSRFTDDDRTDHLSWEWNLTIKKEWKD 219 (219)
T ss_dssp EEEEEECTTCCCCEEEEEEEEEESSTTC
T ss_pred eeEEEEeCCCceEEEEEEEEEEecCCCC
Confidence 9999999999999999999999999986
No 4
>1kmt_A RHO GDP-dissociation inhibitor 1; immunoglobulin fold, beta sandwich motif, isoprenyl-binding, protein binding; 1.30A {Homo sapiens} SCOP: b.1.18.8 PDB: 2jhu_A 2jhv_A 2jhw_A 1ft3_A 1ft0_A 1qvy_A 2jhz_A 2bxw_A 2jhx_A 2jhy_A 1rho_A 1fso_A 2ji0_A 2jhs_A* 2jht_A 1ajw_A 1gdf_A
Probab=99.82 E-value=3.8e-21 Score=143.93 Aligned_cols=54 Identities=52% Similarity=0.851 Sum_probs=52.2
Q ss_pred cceeeecCCCCCCCcccCCCCCCCccceEEEEEEEEEEEEEcCCCceeEEEEEe
Q psy9193 2 VHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWVTLI 55 (128)
Q Consensus 2 ~~m~Gsy~P~~~~~~~~~p~eeaPsG~l~rg~Ysvk~~F~ddd~v~~L~y~q~~ 55 (128)
++|||||+|++|+|++++|+|||||||||||+|+++++|+|||+.+||.|.|.+
T Consensus 80 ~~mlGsy~P~~e~y~~~~~~eeaPsG~laRG~Y~a~s~F~DDD~~~hl~~~w~f 133 (141)
T 1kmt_A 80 DYMVGSYGPRAAAYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNL 133 (141)
T ss_dssp EEEEEEECCCSSCEEEECCCEECCCSTTTCEEEEEEEEEECTTCCCSEEEEEEE
T ss_pred eEeeeccCCCCCcceecCCCccCCceeEEeeeeeeeEEEEcCCCcEEEEEEEeE
Confidence 589999999999999999999999999999999999999999999999999985
No 5
>1ds6_B RHO GDP-dissociation inhibitor 2; beta sandwhich, protein-protein complex, G-domain, immunoglobulin fold, walker fold, GTP-binding protein; HET: GDP; 2.35A {Homo sapiens} SCOP: b.1.18.8 PDB: 1fst_A
Probab=99.79 E-value=2.7e-20 Score=144.11 Aligned_cols=54 Identities=52% Similarity=0.867 Sum_probs=52.2
Q ss_pred cceeeecCCCCCCCcccCCCCCCCccceEEEEEEEEEEEEEcCCCceeEEEEEe
Q psy9193 2 VHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWVTLI 55 (128)
Q Consensus 2 ~~m~Gsy~P~~~~~~~~~p~eeaPsG~l~rg~Ysvk~~F~ddd~v~~L~y~q~~ 55 (128)
++|||||+|++++|++++|+|||||||||||+|+++++|+|||+.+||.|.|.+
T Consensus 119 ~~mlGsy~P~~e~y~~~~p~eeaPsG~laRG~Y~a~skF~DDD~~~hl~~~wsf 172 (180)
T 1ds6_B 119 TFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFTDDDKQDHLSWEWNL 172 (180)
T ss_dssp EEEEEEECCCSSCEEEECCCEECCCSTTTCEEEEEEEEEECTTCCCCEEEEEEE
T ss_pred eEeeeccCCCCCceeecCCCccCCcceeeeeeeeeeEEEEcCCCceEEEEEEEE
Confidence 589999999999999999999999999999999999999999999999999985
No 6
>1doa_B RHO GDI 1, protein (GDP-dissociation inhibitor 1); GTP-binding protein, CDC42, cell cycle; HET: GDP GER; 2.60A {Bos taurus} SCOP: b.1.18.8 PDB: 1hh4_D* 1cc0_E*
Probab=99.78 E-value=7.4e-20 Score=145.30 Aligned_cols=54 Identities=52% Similarity=0.847 Sum_probs=52.3
Q ss_pred cceeeecCCCCCCCcccCCCCCCCccceEEEEEEEEEEEEEcCCCceeEEEEEe
Q psy9193 2 VHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWVTLI 55 (128)
Q Consensus 2 ~~m~Gsy~P~~~~~~~~~p~eeaPsG~l~rg~Ysvk~~F~ddd~v~~L~y~q~~ 55 (128)
++|||||+|++++|++++|+|||||||||||+|+++++|+|||+.+||.|.|.+
T Consensus 158 ~~MlGSY~P~~e~y~~~~p~EeAPSGmLARG~Y~akSkF~DDD~~~hL~~eWsf 211 (219)
T 1doa_B 158 DYMVGSYGPRAEEYEFLTPMEEAPKGMLARGSYNIKSRFTDDDRTDHLSWEWNL 211 (219)
T ss_dssp EEEEEEECCCSSCEEEECCCEECCCTTSCCSEEEEEEEEECTTCCCCEEEEEEE
T ss_pred ceeeeccCCCCCcccccCCCccCCccceeeeeeeeeEEEEeCCCceEEEEEEEE
Confidence 589999999999999999999999999999999999999999999999999985
No 7
>3t5g_B Retinal ROD rhodopsin-sensitive CGMP 3',5'-cyclic phosphodiesterase subunit delta...; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: b.1.18.8 PDB: 1ksg_B* 1ksj_B* 1ksh_B* 3t5i_B*
Probab=90.58 E-value=1 Score=33.73 Aligned_cols=89 Identities=16% Similarity=0.173 Sum_probs=66.1
Q ss_pred CCccceEEEEEEEEEEEEEcCCCceeEEEEEeeecceeEeecccceeeeeCCCCC---CeeecCCCCC-CCccceeeeee
Q psy9193 24 APSGMLARGVYSVQSLFTDDDDAEHLKWVTLILLPLRFAVDKMVHMVGSYPPSLE---LQSYTTPPED-APSGMLARGVY 99 (128)
Q Consensus 24 aPsG~l~rg~Ysvk~~F~ddd~v~~L~y~q~~Vkr~Gi~Vdk~~~miGsy~P~~e---~y~~~~~~ee-aPsG~laRG~Y 99 (128)
.|..+|-.-+=..++.|.+++.+.+++.+|. ++=+|-.+..-..-.|==.|+.. .+.+.+|++. .=+--+.-|.-
T Consensus 51 fp~~~L~~~~V~~~i~Fs~~epi~nFRmier-hyf~~~lle~~dF~FGF~IP~StNTWe~i~E~~~~~~mlpa~~lsGnv 129 (152)
T 3t5g_B 51 VPKKILKCKAVSRELNFSSTEQMEKFRLEQK-VYFKGQCLEEWFFEFGFVIPNSTNTWQSLIEAAPESQMMPASVLTGNV 129 (152)
T ss_dssp ECGGGGGCSEEEEEEEEEESSCEEEEEEEEE-EEETTEEEEEEEEEEEEECTTEEEEEEEEEEBCCGGGSCCHHHHTTTE
T ss_pred cCHHHhcchhheEEEEEeccccccccEEEEE-EEEcCceeeeEeeeeeeEcCCCCcccceEEEcCCccccCCHhHcCCcE
Confidence 4666666667778999999888999999999 59888888888888888789964 3444454331 22223345999
Q ss_pred eeEEEEEeCCCCcE
Q psy9193 100 SVQSLFTDDDDAEH 113 (128)
Q Consensus 100 ~a~s~f~DdD~~~~ 113 (128)
.+..+|+|+|.-..
T Consensus 130 ~IeT~f~d~d~li~ 143 (152)
T 3t5g_B 130 IIETKFFDDDLLVS 143 (152)
T ss_dssp EEEEEEEETTEEEE
T ss_pred EEEEEEecCCEEEE
Confidence 99999999998433
No 8
>2ag4_A GM2-AP, ganglioside GM2 activator; complex of single chain lipid and fatty acids, lipid binding; HET: LP3 OLA; 1.80A {Homo sapiens} SCOP: b.95.1.1 PDB: 1tjj_A* 2af9_A* 2ag2_A* 1pu5_A* 2ag9_A* 1g13_A* 1pub_A* 2agc_A*
Probab=79.42 E-value=3 Score=30.60 Aligned_cols=40 Identities=20% Similarity=0.354 Sum_probs=29.6
Q ss_pred ecCCCCCCCccceeeeeeeeEEEEEeCCCCcEEEEEeceeee
Q psy9193 82 YTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFEIK 123 (128)
Q Consensus 82 ~~~~~eeaPsG~laRG~Y~a~s~f~DdD~~~~l~~ew~feI~ 123 (128)
+.+|..+.|+ +|..|.|+++..+.| +++...=.+-.|.|+
T Consensus 123 ~~lp~~~lP~-~l~~G~Y~v~~~~~~-~~~~l~Ci~~~~~l~ 162 (164)
T 2ag4_A 123 FVVPDLELPS-WLTTGNYRIESVLSS-SGKRLGCIKIAASLK 162 (164)
T ss_dssp EEECCCCCCT-TCSSEEEEEEEEEEE-TTEEEEEEEEEEEEE
T ss_pred eecCcccccC-ccCCceEEEEEEEec-CCCEEEEEEEEEEEE
Confidence 5566668887 899999999999987 554666555555553
No 9
>1tza_A APAG protein, SOR45; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG, unknown function; 2.40A {Shewanella oneidensis} SCOP: b.1.23.1
Probab=76.04 E-value=9.8 Score=27.47 Aligned_cols=92 Identities=18% Similarity=0.210 Sum_probs=52.6
Q ss_pred CCCCCCCccceEEEEEEEEEEEEEcCCCceeEEEEEeeecce-eEeecccceeeeeC---CCCCCeeecCC-CCCCCccc
Q psy9193 19 TPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWVTLILLPLR-FAVDKMVHMVGSYP---PSLELQSYTTP-PEDAPSGM 93 (128)
Q Consensus 19 ~p~eeaPsG~l~rg~Ysvk~~F~ddd~v~~L~y~q~~Vkr~G-i~Vdk~~~miGsy~---P~~e~y~~~~~-~eeaPsG~ 93 (128)
.|+...|..-..-=.|+|+|.=.-+..+.-|.=.|.|.--.| +..-.-+-.||.++ |.+ .+++++- .=.+|+|
T Consensus 17 ~~e~S~p~~~~y~faY~ItI~N~~~~~vQL~sRhW~Itd~~g~~~eV~G~GVVGeqP~L~PGe-~F~YtSg~~L~Tp~G- 94 (134)
T 1tza_A 17 IEQQSSPEDEKYLFSYTITIINLGEQAAKLETRHWIITDANGKTSEVQGAGVVGETPTIPPNT-AYQYTSGTVLDTPFG- 94 (134)
T ss_dssp EEECCBTTBCCEEEEEEEEEEECSSSCEEEEEEEEEEEETTSCEEEEEEESBTTBCCEECTTE-EEEEEEEEEESSSEE-
T ss_pred chhhCCCCCCEEEEEEEEEEEeCCCCCEEEEecEEEEEeCCCCEEEEEcCceEcCCCcCCCCC-ceEEcCCcCcCCCce-
Confidence 344445544434446888886555444445555565422222 22223455688887 554 5666543 4567999
Q ss_pred eeeeeeeeEEEEEeCCCCcEEEEE
Q psy9193 94 LARGVYSVQSLFTDDDDAEHLKWE 117 (128)
Q Consensus 94 laRG~Y~a~s~f~DdD~~~~l~~e 117 (128)
.++|+|... ++|| ..++.+
T Consensus 95 ~M~G~y~m~----~~~G-~~F~v~ 113 (134)
T 1tza_A 95 IMYGTYGMV----SESG-EHFNAI 113 (134)
T ss_dssp EEEEEEEEE----ETTC-CEEEEE
T ss_pred EEEEEEEEE----ECCC-CEEEEE
Confidence 789999974 6777 455443
No 10
>1xq4_A Protein APAG; all beta protein, structural genomics, protein structure initiative, PSI, northeast structural genomics consortium, NESG; 2.70A {Bordetella pertussis} SCOP: b.1.23.1
Probab=75.82 E-value=11 Score=27.32 Aligned_cols=91 Identities=22% Similarity=0.276 Sum_probs=54.8
Q ss_pred CCCCCCCccceEEEEEEEEEEEEEcCCCceeEEEEEeeec-ce-eEeecccceeeeeC---CCCCCeeecCC-CCCCCcc
Q psy9193 19 TPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWVTLILLP-LR-FAVDKMVHMVGSYP---PSLELQSYTTP-PEDAPSG 92 (128)
Q Consensus 19 ~p~eeaPsG~l~rg~Ysvk~~F~ddd~v~~L~y~q~~Vkr-~G-i~Vdk~~~miGsy~---P~~e~y~~~~~-~eeaPsG 92 (128)
.|+...|..-..-=.|+|+|.=.-+..+.-|.=.|.| .- .| +..-.-+-.||.++ |.+ .+++++- .=.+|+|
T Consensus 22 ~~e~S~p~~~~y~FaY~ItI~N~~~~~vQL~sRhW~I-tD~~G~~~eV~G~GVVGeqPvL~PGe-~F~YtSg~~L~Tp~G 99 (139)
T 1xq4_A 22 VPEQSDPSQQQYVFAYTVRITNTGSHPAQVISRHWII-TDGEERVQEVRGLGVVGQQPLLAPGE-TFEYTSGCPLPTPIG 99 (139)
T ss_dssp CGGGCBGGGTBEEEEEEEEEEECSSSCEEEEEEEEEE-ECTTSCEEEEEEESSSSCCCEECTTC-EEEEEEEEEESSSEE
T ss_pred chhhCCCCCCEEEEEEEEEEEeCCCCCEEEEecEEEE-EeCCCCEEEEECCCeecCCCcCCCCC-ceEEcCCcCcCCCce
Confidence 4555566555445578888875555445555556664 32 22 22223455688887 555 5666543 4567999
Q ss_pred ceeeeeeeeEEEEEeCCCCcEEEEE
Q psy9193 93 MLARGVYSVQSLFTDDDDAEHLKWE 117 (128)
Q Consensus 93 ~laRG~Y~a~s~f~DdD~~~~l~~e 117 (128)
.++|+|.+. |+|| ..++.+
T Consensus 100 -~M~G~y~m~----~~~G-~~F~v~ 118 (139)
T 1xq4_A 100 -TMRGTYHCV----GENG-IPFEVP 118 (139)
T ss_dssp -EEEEEEEEE----ETTS-CEEEEE
T ss_pred -EEEEEEEEE----eCCC-CEEEEE
Confidence 789999974 6777 444443
No 11
>1xvs_A Protein APAG; MCSG APC26324, midwest center for structural genomics, structure initiative, PSI, structural genomics, unknown FUN; 2.01A {Vibrio cholerae} SCOP: b.1.23.1
Probab=73.42 E-value=17 Score=25.87 Aligned_cols=92 Identities=18% Similarity=0.168 Sum_probs=54.6
Q ss_pred CCCCCCCccceEEEEEEEEEEEEEcCCCceeEEEEEeeecce-eEeecccceeeeeC---CCCCCeeecCC-CCCCCccc
Q psy9193 19 TPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWVTLILLPLR-FAVDKMVHMVGSYP---PSLELQSYTTP-PEDAPSGM 93 (128)
Q Consensus 19 ~p~eeaPsG~l~rg~Ysvk~~F~ddd~v~~L~y~q~~Vkr~G-i~Vdk~~~miGsy~---P~~e~y~~~~~-~eeaPsG~ 93 (128)
.|+...|..-..-=.|+|+|.=.-+..+.-|.=.|.|.--.| +..-.-+-.||.++ |.+ .|++++- .=.+|.|
T Consensus 17 ~~e~S~p~~~~y~faY~I~I~N~~~~~vQL~sRhW~Itd~~g~~~eV~G~GVVG~qP~L~PGe-~f~YtSg~~L~tp~G- 94 (126)
T 1xvs_A 17 IEEQSNPEYQRFVFAYLITIKNLSSQTVQLMSRRWLITDADGKQTVVEGDGVVGEQPRIKAND-EYTYSSGTALDTPVG- 94 (126)
T ss_dssp CGGGCBGGGTBEEEEEEEEEEECSSSCEEEEEEEEEEEETTCCEEEEEEESBTTBCCEECTTC-EEEEEEEEEESSSEE-
T ss_pred chhcCCCcCCEEEEEEEEEEEECCCCCEEEEecEEEEEeCCCCEEEEECCceEcCCCcCCCCC-ceEEeCCcCcCCCcE-
Confidence 455555655555557888888555444445555565412222 22223455688887 554 5666543 4567899
Q ss_pred eeeeeeeeEEEEEeCCCCcEEEEE
Q psy9193 94 LARGVYSVQSLFTDDDDAEHLKWE 117 (128)
Q Consensus 94 laRG~Y~a~s~f~DdD~~~~l~~e 117 (128)
.++|+|.+ +|+|| ..++.+
T Consensus 95 ~M~G~y~m----~~~~G-~~F~v~ 113 (126)
T 1xvs_A 95 VMQGQYLM----IDEQG-ESFTVE 113 (126)
T ss_dssp EEEEEEEE----ECTTS-CEEEEE
T ss_pred EEEEEEEE----EECCC-CEEEEE
Confidence 77999997 57887 555443
No 12
>2f1e_A Protein APAG; APAG protein, xanthomonas axonopodis PV.citri, structural genomics, unknown function; NMR {Xanthomonas axonopodis PV}
Probab=68.12 E-value=29 Score=24.59 Aligned_cols=92 Identities=17% Similarity=0.095 Sum_probs=55.0
Q ss_pred CCCCCCCccceEEEEEEEEEEEEEcCCCceeEEEEEeeecce-eEeecccceeeeeC---CCCCCeeecCC-CCCCCccc
Q psy9193 19 TPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWVTLILLPLR-FAVDKMVHMVGSYP---PSLELQSYTTP-PEDAPSGM 93 (128)
Q Consensus 19 ~p~eeaPsG~l~rg~Ysvk~~F~ddd~v~~L~y~q~~Vkr~G-i~Vdk~~~miGsy~---P~~e~y~~~~~-~eeaPsG~ 93 (128)
.|+...|..-..-=.|+|+|.=.-+..+.-|.=.|.|.--.| +..-.-+-.||.++ |.+ .+++++- .=.+|+|
T Consensus 18 ~~e~S~p~~~~y~faY~I~I~N~~~~~vQL~sRhW~Itd~~g~~~eV~G~GVVG~qP~L~PGe-~f~YtSg~~L~tp~G- 95 (127)
T 2f1e_A 18 LAHQSTPDEGRYAFAYSIRIQNAGAVPARLVARHWQITDGNGRTEQVDGEGVVGEQPWLRPGE-AFHYTSGVLLETEQG- 95 (127)
T ss_dssp CSTTCBGGGTBEEEEEEEEEEECSSSCEEEEEEEEEEEETTSCEEEEEESSBTTBCCEECTTC-EEEEEEEEEESSSCE-
T ss_pred chhhCCCcCCEEEEEEEEEEEeCCCCCEEEEeceEEEEeCCCCEEEEECCCeecCCCcCCCCC-ceEEeCCcCcCCCcE-
Confidence 556666655555557888887655544555555566412222 22223455688887 554 5665543 4567889
Q ss_pred eeeeeeeeEEEEEeCCCCcEEEEE
Q psy9193 94 LARGVYSVQSLFTDDDDAEHLKWE 117 (128)
Q Consensus 94 laRG~Y~a~s~f~DdD~~~~l~~e 117 (128)
.++|+|.+ +|+|+ ..++.+
T Consensus 96 ~M~G~y~m----~~~~G-~~F~v~ 114 (127)
T 2f1e_A 96 QMQGHYDM----VADDG-TEFIAP 114 (127)
T ss_dssp EEEEEEEE----EETTC-CEEEEE
T ss_pred EEEEEEEE----EECCC-CEEEEE
Confidence 77999997 47777 454443
No 13
>3nqz_A MCP-02, secreted metalloprotease MCP02; autoprocessed complex, the thermolysin family, hydro; 2.05A {Pseudoalteromonas SP} PDB: 3nqy_A
Probab=67.58 E-value=5.9 Score=29.16 Aligned_cols=37 Identities=11% Similarity=0.017 Sum_probs=30.2
Q ss_pred EEEEEEEEEEEEcCCCceeEEEEEeeecceeEeeccccee
Q psy9193 31 RGVYSVQSLFTDDDDAEHLKWVTLILLPLRFAVDKMVHMV 70 (128)
Q Consensus 31 rg~Ysvk~~F~ddd~v~~L~y~q~~Vkr~Gi~Vdk~~~mi 70 (128)
...|.++..++|.++..|.+|.|.+ .||+|.-.+..+
T Consensus 37 ~~~~~~~~~~~d~~G~~hvr~qqty---~GiPV~g~~~vv 73 (180)
T 3nqz_A 37 GNELVVLKEFTSNNGEVTRRYQQTY---QGIPVIGDTVSL 73 (180)
T ss_dssp TEEEEEEEEEECTTSEEEEEEEEEE---TTEEEESCCEEE
T ss_pred ccCeEEEEEEECCCCCEEEEEEEEE---CCEEEECCEEEE
Confidence 3689999999999889999999985 788886555443
No 14
>4goj_C Protein UNC-119 homolog A; small G protein ARL, GDI-like solubilizing factors, cilia, S protein; HET: GNP; 2.10A {Homo sapiens} PDB: 4gok_G*
Probab=66.70 E-value=4.4 Score=32.30 Aligned_cols=76 Identities=20% Similarity=0.222 Sum_probs=55.7
Q ss_pred EEEEEEEEEEcCC-CceeEEEEEeeecceeEeecccceeeeeCCCCC---CeeecCC--CCCCCccceeeeeeee--EEE
Q psy9193 33 VYSVQSLFTDDDD-AEHLKWVTLILLPLRFAVDKMVHMVGSYPPSLE---LQSYTTP--PEDAPSGMLARGVYSV--QSL 104 (128)
Q Consensus 33 ~Ysvk~~F~ddd~-v~~L~y~q~~Vkr~Gi~Vdk~~~miGsy~P~~e---~y~~~~~--~eeaPsG~laRG~Y~a--~s~ 104 (128)
+=.+++.|.+.|+ +.+++.+|. ++=+|..+..-+.-.|==.|+.. .+.+.+| .+..|.-|+. |.|.. .|.
T Consensus 142 tVga~i~Fsvgdkpv~nFRmiER-hyFrd~lLksfDFeFGFcIPnS~NTWE~IyE~p~ls~~l~~emi~-~p~Et~sdSF 219 (240)
T 4goj_C 142 QVGATVEFTVGDKPVNNFRMIER-HYFRNQLLKSFDFHFGFCIPSSKNTCEHIYDFPPLSEELISEMIR-HPYETQSDSF 219 (240)
T ss_dssp EEEEEEEEECCSSCEEEEEEEEE-EEETTEEEEEEEEEEEEECTTCEEEEEEEEECCCCCHHHHHHHHH-STTCEEEEEE
T ss_pred ceeeEEEEeeCceehhcceeeeh-hhhcccchheeccccceeccCCcccceeEEecCCcchhhHHHHHh-CCCceeeeee
Confidence 3346799999776 999999999 59889999999999998889974 4555555 4445555555 88843 355
Q ss_pred EEeCCC
Q psy9193 105 FTDDDD 110 (128)
Q Consensus 105 f~DdD~ 110 (128)
|.+||+
T Consensus 220 YFvddk 225 (240)
T 4goj_C 220 YFVDDR 225 (240)
T ss_dssp EEETTE
T ss_pred EEECCE
Confidence 556665
No 15
>1nep_A EPV20, BNPC2, epididymal secretory protein E1; niemann-PICK C2, LDL, cholesterol, lipid bindin; HET: NAG; 1.70A {Bos taurus} SCOP: b.1.18.7 PDB: 2hka_A*
Probab=60.11 E-value=39 Score=23.29 Aligned_cols=97 Identities=23% Similarity=0.245 Sum_probs=60.2
Q ss_pred CCCCCccceEE-EEEEEEEEEEEcCCCceeEEEEEeeecceeEee--cc--cce-eeeeCCCC--CC--eeecCC-CCCC
Q psy9193 21 PEDAPSGMLAR-GVYSVQSLFTDDDDAEHLKWVTLILLPLRFAVD--KM--VHM-VGSYPPSL--EL--QSYTTP-PEDA 89 (128)
Q Consensus 21 ~eeaPsG~l~r-g~Ysvk~~F~ddd~v~~L~y~q~~Vkr~Gi~Vd--k~--~~m-iGsy~P~~--e~--y~~~~~-~eea 89 (128)
..+.+.=.|.| ..+++.+.|+-+..+..|+-.-. ++=.|+.+- -. +.= -|..=|-. +. |...+| ....
T Consensus 22 ~C~~~PC~l~rG~~~~i~i~f~~~~~~~~~~~~v~-~~~~gv~vp~~~~~~daC~~g~~CPl~~G~~~~y~~~lpV~~~~ 100 (130)
T 1nep_A 22 PCPTQPCKLHRGQSYSVNVTFTSNTQSQSSKAVVH-GIVMGIPVPFPIPESDGCKSGIRCPIEKDKTYNYVNKLPVKNEY 100 (130)
T ss_dssp SCSSSSEEEETTCEEEEEEEEEESSCBSCCEEEEE-EEETTEEEECCCSCCBGGGTTCCSSBCTTCEEEEEEEEECCTTS
T ss_pred CCCCCCCEEEcCCeEEEEEEEEcccccceEEEEEE-EEECCEEeeccCCCCCcccCCCcCcccCCcEEEEEEEeEecccC
Confidence 33344444555 59999999999988888876544 355787763 11 111 12222332 23 444455 3345
Q ss_pred CccceeeeeeeeEEEEEeCCCCcEEEEEeceeee
Q psy9193 90 PSGMLARGVYSVQSLFTDDDDAEHLKWEWTFEIK 123 (128)
Q Consensus 90 PsG~laRG~Y~a~s~f~DdD~~~~l~~ew~feI~ 123 (128)
|. ++|.++-..+|+++....=|+-.++|+
T Consensus 101 P~-----~~~~v~~~L~d~~~~~l~C~~~~~~I~ 129 (130)
T 1nep_A 101 PS-----IKVVVEWELTDDKNQRFFCWQIPIEVE 129 (130)
T ss_dssp CS-----SEEEEEEEEECTTSCEEEEEEEEEEEE
T ss_pred CC-----ccEEEEEEEEcCCCCEEEEEEEeEEEE
Confidence 55 579999999999997777777777765
No 16
>2r5o_A Putative ATP binding component of ABC- transporter; immunoglobulin fold, carbohydrate binding, domain swapping, O antigen export; HET: PG4; 1.30A {Escherichia coli}
Probab=51.63 E-value=65 Score=23.22 Aligned_cols=95 Identities=9% Similarity=-0.053 Sum_probs=56.3
Q ss_pred CCCCCccceEE-EEEEEEEEEEEcCCCceeEEEEEeeecceeEeecccceeeeeCC-----CC-CCeeecCCCCCCCccc
Q psy9193 21 PEDAPSGMLAR-GVYSVQSLFTDDDDAEHLKWVTLILLPLRFAVDKMVHMVGSYPP-----SL-ELQSYTTPPEDAPSGM 93 (128)
Q Consensus 21 ~eeaPsG~l~r-g~Ysvk~~F~ddd~v~~L~y~q~~Vkr~Gi~Vdk~~~miGsy~P-----~~-e~y~~~~~~eeaPsG~ 93 (128)
.+..|...+.. -.+++++.++....+..+.+--.|-.+.|..|--...+.-...+ .+ +.+.+.|... . .
T Consensus 58 ~~G~~~~~~~~Ge~v~l~i~~~~~~~i~~~v~G~~Ik~~~G~~I~g~nT~~~~~~~~~~~~~~G~~~~v~f~f~-l---~ 133 (188)
T 2r5o_A 58 AGVDFPPSLTGNQQTDFLMKVVFEYDFDCVVPGILIKTLDGLFLYGTNSFLASEGRENISVSRGDVRVFKFSLP-V---D 133 (188)
T ss_dssp TTEESCSSEETTCEEEEEEEEEESSCEEEEEEEEEEEETTCCEEEEEEHHHHTTTCCCEEECTTCEEEEEEEEE-C---C
T ss_pred CCCCEeeEEeCCCEEEEEEEEEECCcCCccEEEEEEECCCCCEEEecCcccccccccccccCCCCEEEEEEEEe-c---c
Confidence 34445555554 48889999999877777776666533668876544322211112 11 2223333222 2 4
Q ss_pred eeeeeeeeEEEEEeCC-CCcEEEEEec
Q psy9193 94 LARGVYSVQSLFTDDD-DAEHLKWEWT 119 (128)
Q Consensus 94 laRG~Y~a~s~f~DdD-~~~~l~~ew~ 119 (128)
|.-|.|.+..-+.+.+ ...+..+.|.
T Consensus 134 L~~G~Y~lsv~i~~~~~~~~~~~~d~~ 160 (188)
T 2r5o_A 134 LNSGDYLLSFGISAGNPQTDMTPLDRR 160 (188)
T ss_dssp BCSEEEEEEEEEEEEETTTEEEEEEEE
T ss_pred cCCCeEEEEEEEecCCcCCCcEEEEEE
Confidence 8889999999998866 4456555554
No 17
>3bal_A Acetylacetone-cleaving enzyme; jelly roll, tetramer, dioxygenase, iron, metal-binding, oxidoreductase; 1.95A {Acinetobacter johnsonii}
Probab=43.71 E-value=22 Score=26.04 Aligned_cols=84 Identities=18% Similarity=0.076 Sum_probs=55.0
Q ss_pred EEEEEEEEEEEcCC---CceeEEEEEeeecceeEeecccce------eeeeC--CCCCCeeecCCCCCCCccceeeeeee
Q psy9193 32 GVYSVQSLFTDDDD---AEHLKWVTLILLPLRFAVDKMVHM------VGSYP--PSLELQSYTTPPEDAPSGMLARGVYS 100 (128)
Q Consensus 32 g~Ysvk~~F~ddd~---v~~L~y~q~~Vkr~Gi~Vdk~~~m------iGsy~--P~~e~y~~~~~~eeaPsG~laRG~Y~ 100 (128)
|.+++.++|.-.-. ..|..-++.+|-+..+.....+.. -|||. |-...|...+.++++.==+..+|.
T Consensus 45 g~~t~lvr~~pG~~~p~H~H~g~ee~~VL~G~~~~~~Gd~~~~~~~~aGsYv~ePpGs~H~p~~~~~~~~~~~~~~Gp-- 122 (153)
T 3bal_A 45 SSWTAIFNCPAGSSFASHIHAGPGEYFLTKGKMEVRGGEQEGGSTAYAPSYGFESSGALHGKTFFPVESQFYMTFLGP-- 122 (153)
T ss_dssp TEEEEEEEECTTEEECCEEESSCEEEEEEESEEEETTCGGGTSEEEESSEEEEECTTCEESCCEESSCEEEEEEEESC--
T ss_pred ceEEEEEEeCCCCCccCccCCCCEEEEEEEEEEEecCccccCccccCCCeEEEcCCCCcccceeCCCCeEEEEEEECC--
Confidence 88888888876532 344445555556777777666666 89987 666666644555555434445566
Q ss_pred eEEEEEeCCCCcEEEEEec
Q psy9193 101 VQSLFTDDDDAEHLKWEWT 119 (128)
Q Consensus 101 a~s~f~DdD~~~~l~~ew~ 119 (128)
..|+|+|++.....+|.
T Consensus 123 --~~y~d~~g~~~~~~d~~ 139 (153)
T 3bal_A 123 --LNFIDDNGKVIASIGWA 139 (153)
T ss_dssp --EEEECTTSCEEEEECHH
T ss_pred --eEEECCCCCEeEEEcHH
Confidence 49999999877666553
No 18
>1xwv_A DER F II; beta sheets, allergen; HET: PE3 XPE; 1.83A {Dermatophagoides farinae} SCOP: b.1.18.7 PDB: 1ahk_A 1ahm_A 1wrf_A 2f08_A* 1a9v_A 1ktj_A
Probab=38.98 E-value=92 Score=21.34 Aligned_cols=95 Identities=15% Similarity=0.159 Sum_probs=58.5
Q ss_pred CCCccceEE-EEEEEEEEEEEcCCCceeEEEEEeeecceeEeecc--cceeeeeC--CCC--CC--eeecCC-CCCCCcc
Q psy9193 23 DAPSGMLAR-GVYSVQSLFTDDDDAEHLKWVTLILLPLRFAVDKM--VHMVGSYP--PSL--EL--QSYTTP-PEDAPSG 92 (128)
Q Consensus 23 eaPsG~l~r-g~Ysvk~~F~ddd~v~~L~y~q~~Vkr~Gi~Vdk~--~~miGsy~--P~~--e~--y~~~~~-~eeaPsG 92 (128)
+.+.=.|.| ..+++.+.|+-+..+..|+-.=. ++=.|+.+.=. +.-.=++. |-. +. |...++ +...|+
T Consensus 23 ~~~pC~l~rG~~~~i~~~f~~~~~~~~l~~~v~-~~~~g~~ip~p~~~~daC~~~~CPl~~G~~~~y~~~~~v~~~~P~- 100 (129)
T 1xwv_A 23 GSDPCIIHRGKPFTLEALFDANQNTKTAKIEIK-ASLDGLEIDVPGIDTNACHFMKCPLVKGQQYDAKYTWNVPKIAPK- 100 (129)
T ss_dssp BTSCEEEETTSEEEEEEEEECCSCBSCCEEEEE-EEETTEEECCCSCCCBGGGTSCSSBCTTCEEEEEEEEECCTTSCC-
T ss_pred CCCCCEEeCCCeEEEEEEEECCCccceEEEEEE-EEEcCEEeecCCCCCCccCCccCcccCCEEEEEEEEeEecccCCC-
Confidence 333344555 59999999999877888886655 36678876311 00000111 221 23 443454 344555
Q ss_pred ceeeee-eeeEEEEEeCCCCcEEEE-Eeceeeec
Q psy9193 93 MLARGV-YSVQSLFTDDDDAEHLKW-EWTFEIKK 124 (128)
Q Consensus 93 ~laRG~-Y~a~s~f~DdD~~~~l~~-ew~feI~K 124 (128)
++ |.++-..+||++ ...=| +-.++|++
T Consensus 101 ----v~~~~v~~~L~d~~~-~l~Cf~~~~~~I~~ 129 (129)
T 1xwv_A 101 ----SENVVVTVKLVGDNG-VLACAIATHAKIRD 129 (129)
T ss_dssp ----BSCEEEEEEEEETTE-EEEEEEECCEEEEC
T ss_pred ----CceEEEEEEEEcCCC-cEEEEecccEEEeC
Confidence 56 999999999988 77777 77777764
No 19
>2le2_A P56; UDG inhibition, DNA mimicry, hydrolas inhibitor; NMR {Bacillus phage PHI29}
Probab=32.40 E-value=44 Score=20.61 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=18.3
Q ss_pred eeeeeEEEEEeCCCCcEEEEEe
Q psy9193 97 GVYSVQSLFTDDDDAEHLKWEW 118 (128)
Q Consensus 97 G~Y~a~s~f~DdD~~~~l~~ew 118 (128)
-+|.+.-...||||.+|.+.-=
T Consensus 8 dsy~~t~ll~dddg~q~~e~h~ 29 (56)
T 2le2_A 8 DSYDVTMLLQDDDGKQYYEYHK 29 (56)
T ss_dssp SSEEEEEEEECTTSCEEEEEEE
T ss_pred cceeEEEEEEcCCCceeeeeec
Confidence 3789999999999999987643
No 20
>2c4x_A Endoglucanase, ctcel9D-CEL44A; cellulase ctcel9D-CEL44A, PKD domain, CBM44, carbohydrate BI module, beta-sandwich proteins, cellulosome; 2.0A {Clostridium thermocellum} PDB: 2c26_A
Probab=32.01 E-value=1.7e+02 Score=22.75 Aligned_cols=18 Identities=33% Similarity=0.595 Sum_probs=14.9
Q ss_pred EEEEEEEEEEEEcCCCce
Q psy9193 31 RGVYSVQSLFTDDDDAEH 48 (128)
Q Consensus 31 rg~Ysvk~~F~ddd~v~~ 48 (128)
-|.|+++++.+|+++...
T Consensus 68 ~GtYtVtLTVtD~~G~s~ 85 (260)
T 2c4x_A 68 PGTYKVKLIVTDNQGASS 85 (260)
T ss_dssp CEEEEEEEEEEETTSCEE
T ss_pred CEEEEEEEEEEeCCCCeE
Confidence 399999999999877543
No 21
>2ich_A Putative ATTH; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lipid binding protein; HET: NHE; 2.00A {Nitrosomonas europaea} SCOP: b.176.1.1
Probab=30.68 E-value=85 Score=25.40 Aligned_cols=50 Identities=14% Similarity=0.186 Sum_probs=37.4
Q ss_pred eeeCCCCCCeeecCCCCCCCccceeeeeeeeEEEEEeCCCCcEEEEEecee
Q psy9193 71 GSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFE 121 (128)
Q Consensus 71 Gsy~P~~e~y~~~~~~eeaPsG~laRG~Y~a~s~f~DdD~~~~l~~ew~fe 121 (128)
|.|+|=.....+.||.|.+|---+-=--..++-...|+|+ ..+-++|+|=
T Consensus 1 ~~f~~v~p~~~~~fP~D~~~Hp~~~~EWWY~tg~L~~~~G-~~~G~q~TfF 50 (335)
T 2ich_A 1 GVLAPVVPGKALEFPQDFGAHNDFRIEWWYVTGWLETPTG-KPLGFQITFF 50 (335)
T ss_dssp --CCCCCTTCCCCTTGGGSCCTTSSEEEEEEEEEEECTTC-CEEEEEEEEE
T ss_pred CCcccCCCCCCccCchhcCcCCCCceeeEEEEEEEecCCC-CEEEEEEEEE
Confidence 5577766778888999999886555566667777788888 5799999973
No 22
>3gqq_A Protein UNC-119 homolog A; human retinal protein 4, HRG4, U119A_human, HR3066A, NESG, structural genomics, PSI-2, protein structure initiative; 1.95A {Homo sapiens} PDB: 3rbq_A*
Probab=28.79 E-value=80 Score=24.32 Aligned_cols=94 Identities=20% Similarity=0.223 Sum_probs=60.9
Q ss_pred CccceEEEEEEEEEEEEEcCC-CceeEEEEEeeecceeEeecccceeeeeCCCCC---CeeecCCCCC-CCccceeeeee
Q psy9193 25 PSGMLARGVYSVQSLFTDDDD-AEHLKWVTLILLPLRFAVDKMVHMVGSYPPSLE---LQSYTTPPED-APSGMLARGVY 99 (128)
Q Consensus 25 PsG~l~rg~Ysvk~~F~ddd~-v~~L~y~q~~Vkr~Gi~Vdk~~~miGsy~P~~e---~y~~~~~~ee-aPsG~laRG~Y 99 (128)
|..+|-.-+=..++.|.+.++ +.+++.+|. ++=+|-.+..-..-.|==.|++. ...+.+|+=. .=---+..+.|
T Consensus 89 ~~~~L~~k~V~~~i~Fsvgdkpi~nFRmier-hyF~~~llk~~dF~FGFcIP~StNTWE~iye~P~l~~~~i~emi~~P~ 167 (195)
T 3gqq_A 89 TPAFLRLRQVGATVEFTVGDKPVNNFRMIER-HYFRNQLLKSFDFHFGFCIPSSKNTCEHIYDFPPLSEELISEMIRHPY 167 (195)
T ss_dssp CGGGGGCSEEEEEEEEECCSSCBCSEEEEEE-EEETTEEEEEEEEECCCBCTTSEEEEEEEEECCCCCHHHHHHHHHSTT
T ss_pred CHHHhcchhhceEEEEeeCCccccccEEEEE-EEeCCceeeEEeeeeeeEcCCCCccceeeeecCCCCHHHHHHHHhCCC
Confidence 556666666678999999984 999999999 58888888888887877679864 3555566311 00111233566
Q ss_pred eeEE--E-EEeCCCCcEEEEEec
Q psy9193 100 SVQS--L-FTDDDDAEHLKWEWT 119 (128)
Q Consensus 100 ~a~s--~-f~DdD~~~~l~~ew~ 119 (128)
..+| - ||||-=.-|=+-+|+
T Consensus 168 et~SDSFYFVd~kLvMHNKA~Y~ 190 (195)
T 3gqq_A 168 ETQSDSFYFVDDRLVMHNKADYS 190 (195)
T ss_dssp CEEEEEEEEETTEEEEEEEEEEE
T ss_pred ccccceeEEECCEEEEccceecc
Confidence 6654 3 676544444444444
No 23
>1b69_A Protein (integrase); integrase, DNA binding, transposition, complex, beta-sheet recognition; HET: DNA; NMR {Enterococcus faecalis} SCOP: d.10.1.1 PDB: 1tn9_A* 1bb8_A 2bb8_A
Probab=28.30 E-value=51 Score=21.27 Aligned_cols=31 Identities=19% Similarity=0.457 Sum_probs=25.0
Q ss_pred CCccceee--eeeeeEEEEEeCCCCcEEEEEecee
Q psy9193 89 APSGMLAR--GVYSVQSLFTDDDDAEHLKWEWTFE 121 (128)
Q Consensus 89 aPsG~laR--G~Y~a~s~f~DdD~~~~l~~ew~fe 121 (128)
-..|...| |.|..+ |+|.+|+.+.-..|.++
T Consensus 11 L~~GesqR~dG~Y~yr--y~d~~Gkr~~vYs~~L~ 43 (69)
T 1b69_A 11 LKTGESQRKDGRYLYK--YIDSFGEPQFVYSWKLV 43 (69)
T ss_dssp CCTTEEECSSSCEEEE--EECTTSSEEEEEESCSS
T ss_pred cCCCeEEccCCcEEEE--EEcCCCCEEEEEecccc
Confidence 35677777 888765 89999999999999887
No 24
>2ag4_A GM2-AP, ganglioside GM2 activator; complex of single chain lipid and fatty acids, lipid binding; HET: LP3 OLA; 1.80A {Homo sapiens} SCOP: b.95.1.1 PDB: 1tjj_A* 2af9_A* 2ag2_A* 1pu5_A* 2ag9_A* 1g13_A* 1pub_A* 2agc_A*
Probab=27.41 E-value=86 Score=22.55 Aligned_cols=28 Identities=25% Similarity=0.593 Sum_probs=19.9
Q ss_pred ccCCCCCCCccceEEEEEEEEEEEEEcCC
Q psy9193 17 YTTPPEDAPSGMLARGVYSVQSLFTDDDD 45 (128)
Q Consensus 17 ~~~p~eeaPsG~l~rg~Ysvk~~F~ddd~ 45 (128)
+.+|..+.|+ .+..|.|+++..+.++++
T Consensus 123 ~~lp~~~lP~-~l~~G~Y~v~~~~~~~~~ 150 (164)
T 2ag4_A 123 FVVPDLELPS-WLTTGNYRIESVLSSSGK 150 (164)
T ss_dssp EEECCCCCCT-TCSSEEEEEEEEEEETTE
T ss_pred eecCcccccC-ccCCceEEEEEEEecCCC
Confidence 3455557776 556799999999977443
No 25
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A
Probab=26.78 E-value=52 Score=23.41 Aligned_cols=45 Identities=16% Similarity=0.158 Sum_probs=37.5
Q ss_pred ecceeEeecccceeeeeCCCCCCeeecCCCCCCCcccee----eeeeee
Q psy9193 57 LPLRFAVDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLA----RGVYSV 101 (128)
Q Consensus 57 kr~Gi~Vdk~~~miGsy~P~~e~y~~~~~~eeaPsG~la----RG~Y~a 101 (128)
+..||.+++.-..+|-..|+..+|-+...+|-.-+|.|. .|.+.+
T Consensus 17 ~e~gi~~~~~g~~~gv~~~~~~PhLvnLn~Dp~ls~~lvy~L~~g~t~I 65 (154)
T 4ejq_A 17 AEMGVAMREDGGTLGVFSPKKTPHLVNLNEDPLMSECLLYYIKDGITRV 65 (154)
T ss_dssp HHTTEEECTTSSEEEECCCSSSCEEEECCCCTTCSSEEEEECCSEEEEE
T ss_pred HHcCCeEeccCceeeeecCCCCceEEEecCCcccCceEEEEeCCCCEEE
Confidence 678999999999999999999999999999988888653 455544
No 26
>2bn8_A CEDA, cell division activator CEDA; cell division activator protein, cell cycle protein; NMR {Escherichia coli} PDB: 2d35_A
Probab=25.95 E-value=38 Score=22.63 Aligned_cols=38 Identities=18% Similarity=0.165 Sum_probs=19.7
Q ss_pred cccceeeeeCCCCCCe--eecCCCCCCCccceeeeeeeeE
Q psy9193 65 KMVHMVGSYPPSLELQ--SYTTPPEDAPSGMLARGVYSVQ 102 (128)
Q Consensus 65 k~~~miGsy~P~~e~y--~~~~~~eeaPsG~laRG~Y~a~ 102 (128)
....-|-||-|+.|+- +...--|.--.-++.||+|-|-
T Consensus 14 qqnrpvisyvprvepapp~ha~kmd~frdvw~lrgkyvaf 53 (87)
T 2bn8_A 14 QQNRQIISYVPRTEPAPPEHAIKMDSFRDVWMLRGKYVAF 53 (87)
T ss_dssp -------CCCCCCCCBTTBSCBCTTTCTTEEEETTEEEEB
T ss_pred hcCCcceeeccCCCCCCchHhhhcccchhheeeccceEEE
Confidence 3444567999998751 1112223334568999999874
No 27
>2kyw_A Adhesion exoprotein; structural genomics, northeast structural genomics consortiu GFT, PSI-2, protein structure initiative; NMR {Pediococcus pentosaceus}
Probab=24.94 E-value=43 Score=22.47 Aligned_cols=12 Identities=25% Similarity=0.493 Sum_probs=10.3
Q ss_pred eeEEEEEeCCCC
Q psy9193 100 SVQSLFTDDDDA 111 (128)
Q Consensus 100 ~a~s~f~DdD~~ 111 (128)
+++.+|+|||++
T Consensus 4 ~i~I~YVDDDk~ 15 (87)
T 2kyw_A 4 DATITYVDDDKG 15 (87)
T ss_dssp EEEEEEEETTTT
T ss_pred ceeEEEEecCCC
Confidence 578899999985
No 28
>4asl_A EPA1P; cell adhesion, lectin, tissue invasion, pathogenicity; HET: GAL NGA; 1.24A {Candida glabrata} PDB: 4af9_A* 4afc_A* 4afa_A* 4afb_A* 4a3x_A*
Probab=22.82 E-value=77 Score=24.03 Aligned_cols=29 Identities=21% Similarity=0.492 Sum_probs=25.4
Q ss_pred ceeeee-eeeEEEEEeCCCCcEEEEEecee
Q psy9193 93 MLARGV-YSVQSLFTDDDDAEHLKWEWTFE 121 (128)
Q Consensus 93 ~laRG~-Y~a~s~f~DdD~~~~l~~ew~fe 121 (128)
-|..|. |+++..|.+..+.-+|.+.|...
T Consensus 198 ~L~aG~~Ypiri~y~n~~g~~~l~~~~~~P 227 (259)
T 4asl_A 198 HLDAGVYYPIRLFYNNREYDGALSFTFKTE 227 (259)
T ss_dssp EECTTCBEEEEEEEEECSSCEEEEEEEEET
T ss_pred EecCCCEEEEEEEEEeCCCCcEEEEEEECC
Confidence 467785 99999999999999999999763
No 29
>2y72_A Collagenase, collagenase G; polycystic kidney disease domain, beta barrel, collagen RECO domain, hydrolase; 1.18A {Clostridium histolyticum} PDB: 3jqu_A 3js7_A
Probab=21.73 E-value=1.5e+02 Score=18.39 Aligned_cols=17 Identities=41% Similarity=0.565 Sum_probs=14.9
Q ss_pred eeeeeeEEEEEeCCCCc
Q psy9193 96 RGVYSVQSLFTDDDDAE 112 (128)
Q Consensus 96 RG~Y~a~s~f~DdD~~~ 112 (128)
-|.|.++.+..|++|..
T Consensus 58 ~G~Y~v~LtVtd~~G~~ 74 (85)
T 2y72_A 58 AGTYNVTLKVTDDKGAT 74 (85)
T ss_dssp CEEEEEEEEEEETTSCE
T ss_pred CeEEEEEEEEEECCCCE
Confidence 39999999999999843
No 30
>2v2f_A Penicillin binding protein 1A; transpeptidase activity, peptidoglycan synthesis, transferase, hydrolase; HET: MES; 1.9A {Streptococcus pneumoniae} PDB: 2zc5_A* 2zc6_A*
Probab=21.20 E-value=45 Score=16.75 Aligned_cols=16 Identities=13% Similarity=0.053 Sum_probs=12.0
Q ss_pred eEEEEEeCCCCcEEEE
Q psy9193 101 VQSLFTDDDDAEHLKW 116 (128)
Q Consensus 101 a~s~f~DdD~~~~l~~ 116 (128)
..|+++|.+|+.+.++
T Consensus 5 ~ss~IYD~~g~~i~~l 20 (26)
T 2v2f_A 5 TSSKIYDNKNQLIADL 20 (26)
T ss_pred CCCEEEeCCCCEeeec
Confidence 4588999999766554
Done!