RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9193
(128 letters)
>1kmt_A RHO GDP-dissociation inhibitor 1; immunoglobulin fold, beta
sandwich motif, isoprenyl-binding, protein binding;
1.30A {Homo sapiens} SCOP: b.1.18.8 PDB: 2jhu_A 2jhv_A
2jhw_A 1ft3_A 1ft0_A 1qvy_A 2jhz_A 2bxw_A 2jhx_A 2jhy_A
1rho_A 1fso_A 2ji0_A 2jhs_A* 2jht_A 1ajw_A 1gdf_A
Length = 141
Score = 109 bits (273), Expect = 5e-32
Identities = 38/66 (57%), Positives = 45/66 (68%)
Query: 63 VDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFEI 122
+DK +MVGSY P + TP E+AP GMLARG YS++S FTDDD +HL WEW I
Sbjct: 76 IDKTDYMVGSYGPRAAAYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTI 135
Query: 123 KKSWKD 128
KK WKD
Sbjct: 136 KKDWKD 141
Score = 77.6 bits (191), Expect = 1e-19
Identities = 28/51 (54%), Positives = 34/51 (66%)
Query: 1 MVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKW 51
+MVGSY P + TP E+AP GMLARG YS++S FTDDD +HL W
Sbjct: 79 TDYMVGSYGPRAAAYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSW 129
>1ds6_B RHO GDP-dissociation inhibitor 2; beta sandwhich, protein-protein
complex, G-domain, immunoglobulin fold, walker fold,
GTP-binding protein; HET: GDP; 2.35A {Homo sapiens}
SCOP: b.1.18.8 PDB: 1fst_A
Length = 180
Score = 106 bits (266), Expect = 2e-30
Identities = 37/66 (56%), Positives = 42/66 (63%)
Query: 63 VDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFEI 122
VDK MVGSY P E + TP E+AP GMLARG Y +S FTDDD +HL WEW I
Sbjct: 115 VDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFTDDDKQDHLSWEWNLSI 174
Query: 123 KKSWKD 128
KK W +
Sbjct: 175 KKEWGE 180
Score = 75.0 bits (184), Expect = 3e-18
Identities = 28/51 (54%), Positives = 32/51 (62%)
Query: 1 MVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKW 51
MVGSY P E + TP E+AP GMLARG Y +S FTDDD +HL W
Sbjct: 118 ATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFTDDDKQDHLSW 168
>1doa_B RHO GDI 1, protein (GDP-dissociation inhibitor 1); GTP-binding
protein, CDC42, cell cycle; HET: GDP GER; 2.60A {Bos
taurus} SCOP: b.1.18.8 PDB: 1hh4_D* 1cc0_E*
Length = 219
Score = 105 bits (262), Expect = 2e-29
Identities = 38/66 (57%), Positives = 46/66 (69%)
Query: 63 VDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFEI 122
+DK +MVGSY P E + TP E+AP GMLARG Y+++S FTDDD +HL WEW I
Sbjct: 154 IDKTDYMVGSYGPRAEEYEFLTPMEEAPKGMLARGSYNIKSRFTDDDRTDHLSWEWNLTI 213
Query: 123 KKSWKD 128
KK WKD
Sbjct: 214 KKEWKD 219
Score = 74.4 bits (182), Expect = 1e-17
Identities = 28/49 (57%), Positives = 35/49 (71%)
Query: 3 HMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKW 51
+MVGSY P E + TP E+AP GMLARG Y+++S FTDDD +HL W
Sbjct: 159 YMVGSYGPRAEEYEFLTPMEEAPKGMLARGSYNIKSRFTDDDRTDHLSW 207
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.9 bits (90), Expect = 2e-04
Identities = 25/142 (17%), Positives = 42/142 (29%), Gaps = 39/142 (27%)
Query: 7 SYPPSLELQSYTTPPEDAPSGMLA-RGVYSVQSLFTD-DDDAEHLKWVTLILLPLRFAVD 64
S PPS+ L+ E PS ML+ + + + + + HL + + L
Sbjct: 318 SLPPSI-LEDSLENNEGVPSPMLSISNL-TQEQVQDYVNKTNSHLPAGKQVEISLVNGAK 375
Query: 65 KMVHMVGSYPPSL-----ELQSYTTPPED----------------------AP--SGMLA 95
+V V P SL L+ P +P S +L
Sbjct: 376 NLV--VSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLV 433
Query: 96 RGVYSVQSLFTDDDDAEHLKWE 117
L D ++ +
Sbjct: 434 ----PASDLINKDLVKNNVSFN 451
Score = 37.0 bits (85), Expect = 9e-04
Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 45/136 (33%)
Query: 8 YPPSLELQSYTTPPEDAPS--------------GMLARGVYSV--QSL-FTDDDDAEHLK 50
+ L + + P + P G++ Y V + L FT + +LK
Sbjct: 209 FTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLK 268
Query: 51 WVTL----ILLPLRFA-----------VDKMVHM---VG-----SYP----PSLELQSYT 83
T ++ + A V K + + +G +YP P L+
Sbjct: 269 GATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSL 328
Query: 84 TPPEDAPSGMLA-RGV 98
E PS ML+ +
Sbjct: 329 ENNEGVPSPMLSISNL 344
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 0.35
Identities = 8/20 (40%), Positives = 11/20 (55%), Gaps = 6/20 (30%)
Query: 11 SLELQSYTTPPEDAPSGMLA 30
SL+L Y + AP+ LA
Sbjct: 28 SLKL--YA--DDSAPA--LA 41
Score = 28.8 bits (63), Expect = 0.35
Identities = 8/20 (40%), Positives = 11/20 (55%), Gaps = 6/20 (30%)
Query: 76 SLELQSYTTPPEDAPSGMLA 95
SL+L Y + AP+ LA
Sbjct: 28 SLKL--YA--DDSAPA--LA 41
>1yf2_A Type I restriction-modification enzyme, S subunit; structura
genomics, PSI, protein structure initiative; 2.40A
{Methanocaldococcus jannaschii} SCOP: d.287.1.2
d.287.1.2
Length = 425
Score = 27.7 bits (62), Expect = 1.3
Identities = 7/34 (20%), Positives = 12/34 (35%), Gaps = 2/34 (5%)
Query: 94 LARGVYSVQSLFTDDDDAEHLKWEWTFEIKKSWK 127
+ +G+ L T K EI + W+
Sbjct: 198 IKKGLM--HKLLTKGIGHSRFKKSEIGEIPEDWE 229
>2xfg_A Endoglucanase 1; hydrolase-sugar binding protein complex, family-9
glycoside hydrolase, hydrolase, sugar binding protein;
1.68A {Clostridium thermocellum}
Length = 466
Score = 26.0 bits (57), Expect = 4.7
Identities = 17/79 (21%), Positives = 23/79 (29%), Gaps = 10/79 (12%)
Query: 28 MLARGVYSVQSLFTDDDDAEH----LKWVTLILLPLRFAVDKMVHMVGSYPPSLELQSYT 83
ML VY + F H +KW + D + VG ++
Sbjct: 93 MLGWAVYEYEDAFKQSGQYNHILNNIKWACDYFIKCHPEKDVYYYQVGDGHAD---HAWW 149
Query: 84 TPPEDAPSGMLARGVYSVQ 102
P E P R Y V
Sbjct: 150 GPAEVMPM---ERPSYKVD 165
>2zuy_A YESX protein; beta-propeller, lyase; 1.65A {Bacillus subtilis}
Length = 620
Score = 25.5 bits (55), Expect = 6.8
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 88 DAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTF 120
+ PS ++ARG Y+ L D LK W F
Sbjct: 282 ERPSLVMARGYYTRTVLVAYDFRNGRLKKRWVF 314
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 25.6 bits (55), Expect = 7.3
Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 23/95 (24%)
Query: 2 VH--MVGSY--PPSLELQSYTTPPEDAPSGMLARGVYSVQSL---FTDDDDAEHLKWVTL 54
+H +V Y P + + P D Y + + + E + +
Sbjct: 445 LHRSIVDHYNIPKTFDSDDLIPPYLDQ---------YFYSHIGHHLKNIEHPERMTLFRM 495
Query: 55 ILLPLRFAVDKMVH------MVGSYPPSL-ELQSY 82
+ L RF K+ H GS +L +L+ Y
Sbjct: 496 VFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFY 530
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.133 0.413
Gapped
Lambda K H
0.267 0.0516 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,101,181
Number of extensions: 113033
Number of successful extensions: 239
Number of sequences better than 10.0: 1
Number of HSP's gapped: 237
Number of HSP's successfully gapped: 16
Length of query: 128
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 45
Effective length of database: 4,384,350
Effective search space: 197295750
Effective search space used: 197295750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.9 bits)