RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9193
         (128 letters)



>d1kmta_ b.1.18.8 (A:) Rho GDP-dissociation inhibitor 1, RhoGDI
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 138

 Score =  110 bits (277), Expect = 5e-33
 Identities = 36/64 (56%), Positives = 43/64 (67%)

Query: 63  VDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFEI 122
           +DK  +MVGSY P      + TP E+AP GMLARG YS++S FTDDD  +HL WEW   I
Sbjct: 75  IDKTDYMVGSYGPRAAAYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTI 134

Query: 123 KKSW 126
           KK W
Sbjct: 135 KKDW 138



 Score = 82.1 bits (203), Expect = 7e-22
 Identities = 28/51 (54%), Positives = 34/51 (66%)

Query: 1   MVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKW 51
             +MVGSY P      + TP E+AP GMLARG YS++S FTDDD  +HL W
Sbjct: 78  TDYMVGSYGPRAAAYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSW 128


>d1ds6b_ b.1.18.8 (B:) Rho GDP-dissociation inhibitor 1, RhoGDI
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 179

 Score =  110 bits (278), Expect = 1e-32
 Identities = 37/64 (57%), Positives = 41/64 (64%)

Query: 63  VDKMVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKWEWTFEI 122
           VDK   MVGSY P  E   + TP E+AP GMLARG Y  +S FTDDD  +HL WEW   I
Sbjct: 115 VDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFTDDDKQDHLSWEWNLSI 174

Query: 123 KKSW 126
           KK W
Sbjct: 175 KKEW 178



 Score = 82.5 bits (204), Expect = 1e-21
 Identities = 28/51 (54%), Positives = 32/51 (62%)

Query: 1   MVHMVGSYPPSLELQSYTTPPEDAPSGMLARGVYSVQSLFTDDDDAEHLKW 51
              MVGSY P  E   + TP E+AP GMLARG Y  +S FTDDD  +HL W
Sbjct: 118 ATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFTDDDKQDHLSW 168


>d1vzva_ b.57.1.1 (A:) VZV protease {Varicella-Zoster virus [TaxId:
           10335]}
          Length = 221

 Score = 27.0 bits (60), Expect = 0.58
 Identities = 9/29 (31%), Positives = 17/29 (58%)

Query: 64  DKMVHMVGSYPPSLELQSYTTPPEDAPSG 92
           ++ +++V +Y PS+ L S    P + P G
Sbjct: 96  ERALYLVTNYLPSVSLSSKRLSPNEIPDG 124



 Score = 24.3 bits (53), Expect = 4.4
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 1   MVHMVGSYPPSLELQSYTTPPEDAPSG 27
            +++V +Y PS+ L S    P + P G
Sbjct: 98  ALYLVTNYLPSVSLSSKRLSPNEIPDG 124


>d1ia6a_ a.102.1.2 (A:) Nonprocessive cellulase Cel9M {Clostridium
           cellulolyticum [TaxId: 1521]}
          Length = 431

 Score = 25.3 bits (55), Expect = 2.6
 Identities = 13/85 (15%), Positives = 24/85 (28%), Gaps = 7/85 (8%)

Query: 28  MLARGVYSVQSLFTDDDDAEHL----KWVTLILLPLRFAVDKMVHMVGSYPPSLELQSYT 83
           +L   +Y  +  F    +   +    K+ T   L          + VG         +Y 
Sbjct: 73  ILGWSLYEFKESFDATGNTTKMLQQLKYFTDYFLKSHPNSTTFYYQVGEGNAD---HTYW 129

Query: 84  TPPEDAPSGMLARGVYSVQSLFTDD 108
             PE+      +       S  +D 
Sbjct: 130 GAPEEQTGQRPSLYKADPSSPASDI 154


>d1tf4a1 a.102.1.2 (A:1-460) Endo/exocellulase:cellobiose E-4,
           N-terminal domain {Thermomonospora fusca [TaxId: 2021]}
          Length = 460

 Score = 25.3 bits (55), Expect = 2.7
 Identities = 12/68 (17%), Positives = 20/68 (29%), Gaps = 7/68 (10%)

Query: 27  GMLARGVYSVQSLFTDDDDAEHL----KWVTLILLPLRFAVDKMVHMVGSYPPSLELQSY 82
            MLA G       +       +L    +WV    +    + + +   VG          +
Sbjct: 71  TMLAWGAIESPEGYIRSGQMPYLKDNLRWVNDYFIKAHPSPNVLYVQVGD---GDADHKW 127

Query: 83  TTPPEDAP 90
             P E  P
Sbjct: 128 WGPAEVMP 135


>d2qs8a2 c.1.9.18 (A:64-373) Xaa-Pro dipeptidase {Alteromonas
           macleodii [TaxId: 28108]}
          Length = 310

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 9/64 (14%), Positives = 15/64 (23%), Gaps = 6/64 (9%)

Query: 63  VDKMVHMVGSYPPSLELQSYTTPPEDAPSG------MLARGVYSVQSLFTDDDDAEHLKW 116
           +D  VH    Y    +          A             G  +V+ +      A  L+ 
Sbjct: 3   MDMHVHFGQEYQSKAQAPIKVEREMQAILATQHAYVTFKSGFTTVRQVGDSGLVAISLRD 62

Query: 117 EWTF 120
               
Sbjct: 63  AINS 66


>d1q33a_ d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose
           pyrophosphatase) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 292

 Score = 24.3 bits (52), Expect = 5.7
 Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 1/43 (2%)

Query: 29  LARGVYSVQSLFTDDDDAEHLKWVTLI-LLPLRFAVDKMVHMV 70
              G      +    DDA  +KWV +   L L  +  + + +V
Sbjct: 231 DETGEIMDNLMLEAGDDAGKVKWVDINDKLKLYASHSQFIKLV 273


>d1outa_ a.1.1.2 (A:) Hemoglobin, alpha-chain {Trout (Oncorhynchus
           mykiss) [TaxId: 8022]}
          Length = 142

 Score = 23.8 bits (51), Expect = 6.7
 Identities = 4/16 (25%), Positives = 8/16 (50%)

Query: 111 AEHLKWEWTFEIKKSW 126
           A H   ++T E+  + 
Sbjct: 111 AIHFPSDFTPEVHIAV 126


>d1hlma_ a.1.1.2 (A:) Hemoglobin, different isoforms {Caudina
           arenicola, also known as Molpadia arenicola [TaxId:
           7698]}
          Length = 158

 Score = 23.5 bits (50), Expect = 9.0
 Identities = 3/17 (17%), Positives = 7/17 (41%)

Query: 111 AEHLKWEWTFEIKKSWK 127
              L   +T ++  +W 
Sbjct: 126 KAELGVGFTKQVHDAWA 142


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.133    0.413 

Gapped
Lambda     K      H
   0.267   0.0315    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 517,652
Number of extensions: 21403
Number of successful extensions: 70
Number of sequences better than 10.0: 1
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 15
Length of query: 128
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 53
Effective length of database: 1,377,846
Effective search space: 73025838
Effective search space used: 73025838
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.5 bits)