BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9195
(139 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8IZS8|CA2D3_HUMAN Voltage-dependent calcium channel subunit alpha-2/delta-3 OS=Homo
sapiens GN=CACNA2D3 PE=1 SV=1
Length = 1091
Score = 143 bits (361), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 71/131 (54%), Positives = 91/131 (69%), Gaps = 3/131 (2%)
Query: 10 GLMWSEGLDEVFRENYMADPTLLWQYFGSAKGFLRTYPDKEDAPAED--LIFDCRNRQWY 67
G+ WSE L++VF +N+ DP+L+WQYFGSAKGF R YP + P E+ + FDCRNR+WY
Sbjct: 188 GVYWSESLNKVFVDNFDRDPSLIWQYFGSAKGFFRQYPGIKWEPDENGVIAFDCRNRKWY 247
Query: 68 IQATTCSKDVVILVDNSGSMAGMRNTTAKLVLHSLLQTFSNNDFINIFKFNLTVDTIVPC 127
IQA T KDVVILVD SGSM G+R T AK + S+L T ++DF NI +N + + PC
Sbjct: 248 IQAATSPKDVVILVDVSGSMKGLRLTIAKQTVSSILDTLGDDDFFNIIAYNEELHYVEPC 307
Query: 128 LGNYSLVQTLR 138
L N +LVQ R
Sbjct: 308 L-NGTLVQADR 317
>sp|Q9Z1L5|CA2D3_MOUSE Voltage-dependent calcium channel subunit alpha-2/delta-3 OS=Mus
musculus GN=Cacna2d3 PE=1 SV=1
Length = 1091
Score = 143 bits (361), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 71/131 (54%), Positives = 91/131 (69%), Gaps = 3/131 (2%)
Query: 10 GLMWSEGLDEVFRENYMADPTLLWQYFGSAKGFLRTYPDKEDAPAED--LIFDCRNRQWY 67
G+ WSE L++VF +N+ DP+L+WQYFGSAKGF R YP + P E+ + FDCRNR+WY
Sbjct: 188 GVYWSESLNKVFVDNFDRDPSLIWQYFGSAKGFFRQYPGIKWEPDENGVIAFDCRNRKWY 247
Query: 68 IQATTCSKDVVILVDNSGSMAGMRNTTAKLVLHSLLQTFSNNDFINIFKFNLTVDTIVPC 127
IQA T KDVVILVD SGSM G+R T AK + S+L T ++DF NI +N + + PC
Sbjct: 248 IQAATSPKDVVILVDVSGSMKGLRLTIAKQTVSSILDTLGDDDFFNIITYNEELHYVEPC 307
Query: 128 LGNYSLVQTLR 138
L N +LVQ R
Sbjct: 308 L-NGTLVQADR 317
>sp|Q8CFG5|CA2D3_RAT Voltage-dependent calcium channel subunit alpha-2/delta-3 OS=Rattus
norvegicus GN=Cacna2d3 PE=2 SV=1
Length = 1085
Score = 143 bits (360), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 71/131 (54%), Positives = 91/131 (69%), Gaps = 3/131 (2%)
Query: 10 GLMWSEGLDEVFRENYMADPTLLWQYFGSAKGFLRTYPDKEDAPAED--LIFDCRNRQWY 67
G+ WSE L++VF +N+ DP+L+WQYFGSAKGF R YP + P E+ + FDCRNR+WY
Sbjct: 188 GVYWSESLNKVFVDNFDRDPSLIWQYFGSAKGFFRQYPGIKWEPDENGVIAFDCRNRKWY 247
Query: 68 IQATTCSKDVVILVDNSGSMAGMRNTTAKLVLHSLLQTFSNNDFINIFKFNLTVDTIVPC 127
IQA T KDVVILVD SGSM G+R T AK + S+L T ++DF NI +N + + PC
Sbjct: 248 IQAATSPKDVVILVDVSGSMKGLRLTIAKQTVSSILDTLGDDDFFNIITYNEELHYVEPC 307
Query: 128 LGNYSLVQTLR 138
L N +LVQ R
Sbjct: 308 L-NGTLVQADR 317
>sp|Q7Z3S7|CA2D4_HUMAN Voltage-dependent calcium channel subunit alpha-2/delta-4 OS=Homo
sapiens GN=CACNA2D4 PE=1 SV=2
Length = 1137
Score = 138 bits (347), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 72/135 (53%), Positives = 85/135 (62%), Gaps = 3/135 (2%)
Query: 6 DVRAGLMWSEGLDEVFRENYMADPTLLWQYFGSAKGFLRTYPDKEDAPAED--LIFDCRN 63
D+ G+ SE L+ VF EN+ DPTL WQYFGSA GF R YP + P E+ + FDCRN
Sbjct: 219 DILNGVYMSEALNAVFVENFQRDPTLTWQYFGSATGFFRIYPGIKWTPDENGVITFDCRN 278
Query: 64 RQWYIQATTCSKDVVILVDNSGSMAGMRNTTAKLVLHSLLQTFSNNDFINIFKFNLTVDT 123
R WYIQA T KD+VILVD SGSM G+R T AK + ++L T NDFINI +N V
Sbjct: 279 RGWYIQAATSPKDIVILVDVSGSMKGLRMTIAKHTITTILDTLGENDFINIIAYNDYVHY 338
Query: 124 IVPCLGNYSLVQTLR 138
I PC LVQ R
Sbjct: 339 IEPCFKGI-LVQADR 352
>sp|Q5RJF7|CA2D4_MOUSE Voltage-dependent calcium channel subunit alpha-2/delta-4 OS=Mus
musculus GN=Cacna2d4 PE=2 SV=1
Length = 1116
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 69/135 (51%), Positives = 84/135 (62%), Gaps = 3/135 (2%)
Query: 6 DVRAGLMWSEGLDEVFRENYMADPTLLWQYFGSAKGFLRTYPDKEDAPAED--LIFDCRN 63
D+ G+ SE L+ VF EN+ DPTL WQYFGS+ GF R YP + P E+ + FDCRN
Sbjct: 198 DILNGVYMSEALNPVFVENFQRDPTLTWQYFGSSTGFFRIYPGIKWMPDENGVIAFDCRN 257
Query: 64 RQWYIQATTCSKDVVILVDNSGSMAGMRNTTAKLVLHSLLQTFSNNDFINIFKFNLTVDT 123
R WYIQA T KD+VILVD SGSM G+R AK + ++L T NDF+NI +N V
Sbjct: 258 RGWYIQAATSPKDIVILVDISGSMKGLRMAIAKHTITTILDTLGENDFVNIIAYNDYVHY 317
Query: 124 IVPCLGNYSLVQTLR 138
I PC LVQ R
Sbjct: 318 IEPCFKGI-LVQADR 331
>sp|O08532|CA2D1_MOUSE Voltage-dependent calcium channel subunit alpha-2/delta-1 OS=Mus
musculus GN=Cacna2d1 PE=1 SV=1
Length = 1103
Score = 103 bits (256), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 68/113 (60%), Gaps = 5/113 (4%)
Query: 11 LMWSEGLDEVFRENYMADPTLLWQYFGSAKGFLRTYP-----DKEDAPAEDLIFDCRNRQ 65
L W+ LDEVF+ N DPTLLWQ FGSA G R YP D P + ++D R R
Sbjct: 183 LNWTSALDEVFKRNRDEDPTLLWQVFGSATGLARYYPASPWVDNSRTPNKIDLYDVRRRP 242
Query: 66 WYIQATTCSKDVVILVDNSGSMAGMRNTTAKLVLHSLLQTFSNNDFINIFKFN 118
WYIQ KD++ILVD SGS++G+ + + +L+T S++DF+N+ FN
Sbjct: 243 WYIQGAASPKDMLILVDVSGSVSGLTLKLIRTSVSEMLETLSDDDFVNVASFN 295
>sp|P54289|CA2D1_HUMAN Voltage-dependent calcium channel subunit alpha-2/delta-1 OS=Homo
sapiens GN=CACNA2D1 PE=1 SV=3
Length = 1103
Score = 102 bits (255), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 49/113 (43%), Positives = 69/113 (61%), Gaps = 5/113 (4%)
Query: 11 LMWSEGLDEVFRENYMADPTLLWQYFGSAKGFLRTYP-----DKEDAPAEDLIFDCRNRQ 65
L W+ LDEVF++N DP+LLWQ FGSA G R YP D P + ++D R R
Sbjct: 183 LNWTSALDEVFKKNREEDPSLLWQVFGSATGLARYYPASPWVDNSRTPNKIDLYDVRRRP 242
Query: 66 WYIQATTCSKDVVILVDNSGSMAGMRNTTAKLVLHSLLQTFSNNDFINIFKFN 118
WYIQ KD++ILVD SGS++G+ + + +L+T S++DF+N+ FN
Sbjct: 243 WYIQGAASPKDMLILVDVSGSVSGLTLKLIRTSVSEMLETLSDDDFVNVASFN 295
>sp|Q9NY47|CA2D2_HUMAN Voltage-dependent calcium channel subunit alpha-2/delta-2 OS=Homo
sapiens GN=CACNA2D2 PE=1 SV=2
Length = 1150
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/109 (45%), Positives = 68/109 (62%), Gaps = 1/109 (0%)
Query: 11 LMWSEGLDEVFRENYMADPTLLWQYFGSAKGFLRTYPDKE-DAPAEDLIFDCRNRQWYIQ 69
L W+E L+ VF EN DPTLLWQ FGSA G R YP AP + ++D R R WYIQ
Sbjct: 225 LNWTEALENVFMENRRQDPTLLWQVFGSATGVTRYYPATPWRAPKKIDLYDVRRRPWYIQ 284
Query: 70 ATTCSKDVVILVDNSGSMAGMRNTTAKLVLHSLLQTFSNNDFINIFKFN 118
+ KD+VI+VD SGS++G+ K + +L T S++D++N+ FN
Sbjct: 285 GASSPKDMVIIVDVSGSVSGLTLKLMKTSVCEMLDTLSDDDYVNVASFN 333
>sp|P13806|CA2D1_RABIT Voltage-dependent calcium channel subunit alpha-2/delta-1
OS=Oryctolagus cuniculus GN=CACNA2D1 PE=1 SV=1
Length = 1106
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 69/113 (61%), Gaps = 5/113 (4%)
Query: 11 LMWSEGLDEVFRENYMADPTLLWQYFGSAKGFLRTYP-----DKEDAPAEDLIFDCRNRQ 65
L W+ LD+VF++N DP+LLWQ FGSA G R YP D P + ++D R R
Sbjct: 185 LNWTSALDDVFKKNREEDPSLLWQVFGSATGLARYYPASPWVDNSRTPNKIDLYDVRRRP 244
Query: 66 WYIQATTCSKDVVILVDNSGSMAGMRNTTAKLVLHSLLQTFSNNDFINIFKFN 118
WYIQ KD++ILVD SGS++G+ + + +L+T S++DF+N+ FN
Sbjct: 245 WYIQGAASPKDMLILVDVSGSVSGLTLKLIRTSVSEMLETLSDDDFVNVASFN 297
>sp|Q8CFG6|CA2D2_RAT Voltage-dependent calcium channel subunit alpha-2/delta-2 OS=Rattus
norvegicus GN=Cacna2d2 PE=2 SV=1
Length = 1157
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/109 (45%), Positives = 68/109 (62%), Gaps = 1/109 (0%)
Query: 11 LMWSEGLDEVFRENYMADPTLLWQYFGSAKGFLRTYPDKE-DAPAEDLIFDCRNRQWYIQ 69
L W+E L+ VF EN DPTLLWQ FGSA G R YP AP + ++D R R WYIQ
Sbjct: 228 LNWTEALENVFIENRRQDPTLLWQVFGSATGVTRYYPATPWRAPKKIDLYDVRRRPWYIQ 287
Query: 70 ATTCSKDVVILVDNSGSMAGMRNTTAKLVLHSLLQTFSNNDFINIFKFN 118
+ KD+VI+VD SGS++G+ K + +L T S++D++N+ FN
Sbjct: 288 GASSPKDMVIIVDVSGSVSGLTLKLMKTSVCEMLDTLSDDDYVNVASFN 336
>sp|Q6PHS9|CA2D2_MOUSE Voltage-dependent calcium channel subunit alpha-2/delta-2 OS=Mus
musculus GN=Cacna2d2 PE=1 SV=1
Length = 1154
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/109 (45%), Positives = 68/109 (62%), Gaps = 1/109 (0%)
Query: 11 LMWSEGLDEVFRENYMADPTLLWQYFGSAKGFLRTYPDKE-DAPAEDLIFDCRNRQWYIQ 69
L W+E L+ VF EN DPTLLWQ FGSA G R YP AP + ++D R R WYIQ
Sbjct: 228 LNWTEALENVFIENRRQDPTLLWQVFGSATGVTRYYPATPWRAPKKIDLYDVRRRPWYIQ 287
Query: 70 ATTCSKDVVILVDNSGSMAGMRNTTAKLVLHSLLQTFSNNDFINIFKFN 118
+ KD+VI+VD SGS++G+ K + +L T S++D++N+ FN
Sbjct: 288 GASSPKDMVIIVDVSGSVSGLTLKLMKTSVCEMLDTLSDDDYVNVASFN 336
>sp|P54290|CA2D1_RAT Voltage-dependent calcium channel subunit alpha-2/delta-1 OS=Rattus
norvegicus GN=Cacna2d1 PE=1 SV=1
Length = 1091
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 66/113 (58%), Gaps = 6/113 (5%)
Query: 11 LMWSEGLDEVFRENYMADPTLLWQYFGSAKGFLRTYP-----DKEDAPAEDLIFDCRNRQ 65
L W+ LDEVF+ N DPTLLWQ F +A R YP D P + ++D R R
Sbjct: 183 LNWTSALDEVFKRNRDEDPTLLWQVF-AADRLARYYPASPWVDNSRTPNKIDLYDVRRRP 241
Query: 66 WYIQATTCSKDVVILVDNSGSMAGMRNTTAKLVLHSLLQTFSNNDFINIFKFN 118
WYIQ KD++ILVD SGS++G+ + + +L+T S++DF+N+ FN
Sbjct: 242 WYIQGAASPKDMLILVDVSGSVSGLTLKLIRTSVSEMLETLSDDDFVNVASFN 294
>sp|P34374|UNC36_CAEEL Voltage-dependent calcium channel unc-36 OS=Caenorhabditis elegans
GN=unc-36 PE=1 SV=2
Length = 1249
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 80/140 (57%), Gaps = 6/140 (4%)
Query: 4 HDDVRAGLMWSEGLDEVFRENYMADPTLLWQYFGSAKGFLRTYPDKE---DAPAEDL-IF 59
++D+ + WS+ +D V+R N L +Q F S G++R YP D E L +F
Sbjct: 175 NEDLLRKIDWSD-IDAVYRTNREETKDLAFQLFCSEAGYMRYYPAASWFWDNQDEHLDLF 233
Query: 60 DCRNRQWYIQATTCSKDVVILVDNSGSMAGMRNTTAKLVLHSLLQTFSNNDFINIFKFNL 119
DCRN +WYI + T SK+V+I++D SGSM G R AK ++L+T S+ND+ NI F+
Sbjct: 234 DCRNTEWYINSATNSKNVLIMLDMSGSMLGQRYEVAKQTTEAILETLSHNDYFNIMTFSK 293
Query: 120 TVDTIVPCLGNYSLVQ-TLR 138
+ C G L+Q T+R
Sbjct: 294 NTFLLDGCNGTNGLLQATMR 313
>sp|A8XP97|UNC36_CAEBR Voltage-dependent calcium channel unc-36 OS=Caenorhabditis briggsae
GN=unc-36 PE=3 SV=2
Length = 1254
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/131 (40%), Positives = 75/131 (57%), Gaps = 6/131 (4%)
Query: 13 WSEGLDEVFRENYMADPTLLWQYFGSAKGFLRTYPDKE---DAPAEDL-IFDCRNRQWYI 68
WS+ +D V+R N L +Q F S G++R YP D E L +FDCRN +WYI
Sbjct: 184 WSD-IDAVYRTNREETKDLAFQLFCSEAGYMRYYPAASWFWDNQDEHLDLFDCRNTEWYI 242
Query: 69 QATTCSKDVVILVDNSGSMAGMRNTTAKLVLHSLLQTFSNNDFINIFKFNLTVDTIVPCL 128
+ T SK+V+I++D SGSM G R AK ++L+T S+ND+ NI F+ + C
Sbjct: 243 NSATNSKNVLIMLDMSGSMLGQRYEVAKQTTEAILETLSHNDYFNIMTFSKNTFLLDGCN 302
Query: 129 GNYSLVQ-TLR 138
G L+Q T+R
Sbjct: 303 GTNGLLQATMR 313
>sp|Q5VU97|CAHD1_HUMAN VWFA and cache domain-containing protein 1 OS=Homo sapiens
GN=CACHD1 PE=2 SV=2
Length = 1274
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 15/114 (13%)
Query: 17 LDEVFRENYMADPTLLWQYFGSAKGFLRTYPDKEDAPAEDLIFDC------RNRQWYIQA 70
L+ V +N ++P + WQYF S +G +P + F C R+R Y+
Sbjct: 170 LNSVLADNLKSNPGIKWQYFSSEEGIFTVFPAHK--------FRCKGSYEHRSRPIYVST 221
Query: 71 TTC-SKDVVILVDNSGSMAGMRNTTAKLVLHSLLQTFSNNDFINIFKFNLTVDT 123
SK +V+++D+ S+ + AK +L +D I++ TV T
Sbjct: 222 VRPQSKHIVVILDHGASVTDTQLQIAKDAAQVILSAIDEHDKISVLTVADTVRT 275
>sp|Q6PDJ1|CAHD1_MOUSE VWFA and cache domain-containing protein 1 OS=Mus musculus
GN=Cachd1 PE=2 SV=1
Length = 1288
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 15/114 (13%)
Query: 17 LDEVFRENYMADPTLLWQYFGSAKGFLRTYPDKEDAPAEDLIFDC------RNRQWYIQA 70
L+ V +N ++P + WQYF S +G +P + F C R+R Y+
Sbjct: 184 LNSVLADNLKSNPGIKWQYFSSEEGIFTVFPAHK--------FRCKGSYEHRSRPIYVST 235
Query: 71 TTC-SKDVVILVDNSGSMAGMRNTTAKLVLHSLLQTFSNNDFINIFKFNLTVDT 123
SK +V+++D+ S+ + AK +L +D I++ V T
Sbjct: 236 VRPQSKHIVVILDHGASVTDTQLQIAKDAAQVILSAIDEHDKISVLTVADAVRT 289
>sp|A6X935|ITIH4_MOUSE Inter alpha-trypsin inhibitor, heavy chain 4 OS=Mus musculus
GN=Itih4 PE=1 SV=2
Length = 942
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 28/47 (59%)
Query: 72 TCSKDVVILVDNSGSMAGMRNTTAKLVLHSLLQTFSNNDFINIFKFN 118
T SK+V+ ++D SGSM+G + + L +L+ S D N+ +F+
Sbjct: 270 TMSKNVIFVIDKSGSMSGKKIQQTREALVKILKDLSPQDQFNLIEFS 316
>sp|Q8FQP0|ISPH_COREF 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
OS=Corynebacterium efficiens (strain DSM 44549 / YS-314
/ AJ 12310 / JCM 11189 / NBRC 100395) GN=ispH PE=3 SV=1
Length = 336
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 47/98 (47%), Gaps = 16/98 (16%)
Query: 25 YMAD-PTLLW---------QYFGSAKGFLRTYPDKEDAPAEDLIFDCRNRQWYIQATTCS 74
++AD P L+W + + + YP +D P++D+ + +NRQ ++A
Sbjct: 177 FLADEPNLIWLSQTTLSVDETMEIVRELKKVYPQLQDPPSDDICYATQNRQVAVKAIAER 236
Query: 75 KDVVILVDNSGSMAGMRNTTAKLVLHSLLQTFSNNDFI 112
D++I+V ++ S +R ++ LQ + N ++
Sbjct: 237 CDLMIVVGSTNSSNSVR------LVEVALQAGAKNAYL 268
>sp|Q14624|ITIH4_HUMAN Inter-alpha-trypsin inhibitor heavy chain H4 OS=Homo sapiens
GN=ITIH4 PE=1 SV=4
Length = 930
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 28/58 (48%)
Query: 71 TTCSKDVVILVDNSGSMAGMRNTTAKLVLHSLLQTFSNNDFINIFKFNLTVDTIVPCL 128
TT K+VV ++D SGSM+G + + L +L S D N+ F+ P L
Sbjct: 269 TTMPKNVVFVIDKSGSMSGRKIQQTREALIKILDDLSPRDQFNLIVFSTEATQWRPSL 326
>sp|P97280|ITIH3_MESAU Inter-alpha-trypsin inhibitor heavy chain H3 OS=Mesocricetus
auratus GN=ITIH3 PE=1 SV=1
Length = 886
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 28/51 (54%)
Query: 73 CSKDVVILVDNSGSMAGMRNTTAKLVLHSLLQTFSNNDFINIFKFNLTVDT 123
K++V ++D SGSMAG + ++ L +L +D++N F+ V T
Sbjct: 278 VPKNIVFVIDISGSMAGRKIQQTRVALLKILDDMKQDDYLNFILFSTGVTT 328
>sp|P56652|ITIH3_BOVIN Inter-alpha-trypsin inhibitor heavy chain H3 OS=Bos taurus GN=ITIH3
PE=1 SV=2
Length = 891
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 6/92 (6%)
Query: 42 FLRTYPDKEDAPAEDLIFDCRNRQWYIQA--TTCSKDVVILVDNSGSMAGMRNTTAKLVL 99
F+ TY ++PA I + ++ K VV ++D SGSM G + K L
Sbjct: 248 FIITYDVNRESPANVQIVNGYFVHFFAPQGLPVVPKSVVFVIDVSGSMHGRKMEQTKDAL 307
Query: 100 HSLLQTFSNNDFINIFKFNLTV----DTIVPC 127
+L+ +D++N F+ V D++VP
Sbjct: 308 LKILEDVKQDDYLNFILFSGDVTTWKDSLVPA 339
>sp|C7G046|Y6969_DICDI von Willebrand factor A domain-containing protein DDB_G0286969
OS=Dictyostelium discoideum GN=DDB_G0286969 PE=4 SV=1
Length = 2079
Score = 33.9 bits (76), Expect = 0.28, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 76 DVVILVDNSGSMAGMRNTTAKLVLHSLLQTFSNNDFINIFKF 117
+++ LVD S SM G AK LH L + S + + NI F
Sbjct: 354 ELIFLVDVSESMEGYNMKHAKKALHRFLHSLSKDTYFNIISF 395
>sp|Q6ADV0|ISPH_LEIXX 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Leifsonia
xyli subsp. xyli (strain CTCB07) GN=ispH PE=3 SV=1
Length = 337
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 29/46 (63%)
Query: 46 YPDKEDAPAEDLIFDCRNRQWYIQATTCSKDVVILVDNSGSMAGMR 91
+P+ ++ P++D+ + +NRQ I+ S D+VI+V ++ S +R
Sbjct: 195 FPNLQNPPSDDICYATQNRQVAIKKVAQSADLVIVVGSANSSNSVR 240
>sp|Q6NI36|ISPH_CORDI 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
OS=Corynebacterium diphtheriae (strain ATCC 700971 /
NCTC 13129 / Biotype gravis) GN=ispH PE=3 SV=1
Length = 333
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 50 EDAPAEDLIFDCRNRQWYIQATTCSKDVVILVDNSGSMAGMR 91
+D P++D+ + +NRQ ++A DVVI+V + S R
Sbjct: 208 QDPPSDDICYATQNRQVAVKAIAAESDVVIVVGSQNSSNSKR 249
>sp|C1A2V7|ISPH_RHOE4 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Rhodococcus
erythropolis (strain PR4 / NBRC 100887) GN=ispH PE=3
SV=1
Length = 337
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 28/46 (60%)
Query: 46 YPDKEDAPAEDLIFDCRNRQWYIQATTCSKDVVILVDNSGSMAGMR 91
+P+ +D P++D+ + +NRQ ++A D+VI+V + S +R
Sbjct: 207 FPNLQDPPSDDICYATQNRQVAVKAMAPECDLVIVVGSRNSSNSVR 252
>sp|Q0S489|ISPH_RHOSR 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Rhodococcus
sp. (strain RHA1) GN=ispH PE=3 SV=1
Length = 336
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 28/46 (60%)
Query: 46 YPDKEDAPAEDLIFDCRNRQWYIQATTCSKDVVILVDNSGSMAGMR 91
+P+ +D P++D+ + +NRQ ++A D+VI+V + S +R
Sbjct: 207 FPNLQDPPSDDICYATQNRQVAVKAMAPECDLVIVVGSRNSSNSVR 252
>sp|Q5RB37|ITIH3_PONAB Inter-alpha-trypsin inhibitor heavy chain H3 OS=Pongo abelii
GN=ITIH3 PE=2 SV=1
Length = 876
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%)
Query: 73 CSKDVVILVDNSGSMAGMRNTTAKLVLHSLLQTFSNNDFINIFKFNLTVDT 123
K+V ++D SGSMAG + K L +L+ D++N F+ V T
Sbjct: 278 VPKNVAFVIDISGSMAGRKLEQTKEALLRILEDMKKEDYLNFILFSGDVST 328
>sp|Q06033|ITIH3_HUMAN Inter-alpha-trypsin inhibitor heavy chain H3 OS=Homo sapiens
GN=ITIH3 PE=1 SV=2
Length = 890
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%)
Query: 73 CSKDVVILVDNSGSMAGMRNTTAKLVLHSLLQTFSNNDFINIFKFNLTVDT 123
K+V ++D SGSMAG + K L +L+ D++N F+ V T
Sbjct: 281 VPKNVAFVIDISGSMAGRKLEQTKEALLRILEDMQEEDYLNFILFSGDVST 331
>sp|Q5YQ94|ISPH_NOCFA 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Nocardia
farcinica (strain IFM 10152) GN=ispH PE=3 SV=1
Length = 336
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 46 YPDKEDAPAEDLIFDCRNRQWYIQATTCSKDVVILVDNSGSMAGMR 91
+P +D P++D+ + +NRQ ++A D+VI+V + S +R
Sbjct: 207 FPSLQDPPSDDICYATQNRQVAVKAMAPECDLVIVVGSRNSSNSVR 252
>sp|P0A5I0|ISPH1_MYCTU 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 1
OS=Mycobacterium tuberculosis GN=ispH1 PE=3 SV=1
Length = 335
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 28/48 (58%)
Query: 44 RTYPDKEDAPAEDLIFDCRNRQWYIQATTCSKDVVILVDNSGSMAGMR 91
R +P +D P++D+ + +NRQ ++A ++VI+V + S +R
Sbjct: 205 RRFPKLQDPPSDDICYATQNRQVAVKAMAPECELVIVVGSRNSSNSVR 252
>sp|P0A5I1|ISPH1_MYCBO 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 1
OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
GN=ispH1 PE=3 SV=1
Length = 335
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 28/48 (58%)
Query: 44 RTYPDKEDAPAEDLIFDCRNRQWYIQATTCSKDVVILVDNSGSMAGMR 91
R +P +D P++D+ + +NRQ ++A ++VI+V + S +R
Sbjct: 205 RRFPKLQDPPSDDICYATQNRQVAVKAMAPECELVIVVGSRNSSNSVR 252
>sp|Q73WH6|ISPH_MYCPA 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Mycobacterium
paratuberculosis (strain ATCC BAA-968 / K-10) GN=ispH
PE=3 SV=1
Length = 332
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 46 YPDKEDAPAEDLIFDCRNRQWYIQATTCSKDVVILVDNSGSMAGMR 91
+P +D P++D+ + +NRQ ++A D+VI+V + S +R
Sbjct: 204 FPKLQDPPSDDICYATQNRQVAVKAMAPECDLVIVVGSRNSSNSVR 249
>sp|C1AYI4|ISPH_RHOOB 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Rhodococcus
opacus (strain B4) GN=ispH PE=3 SV=1
Length = 336
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 46 YPDKEDAPAEDLIFDCRNRQWYIQATTCSKDVVILVDNSGSMAGMR 91
+P +D P++D+ + +NRQ ++A D+VI+V + S +R
Sbjct: 207 FPSLQDPPSDDICYATQNRQVAVKAMAPECDLVIVVGSRNSSNSVR 252
>sp|Q83MR9|ISPH_TROWT 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Tropheryma
whipplei (strain Twist) GN=ispH PE=3 SV=1
Length = 322
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 27/46 (58%)
Query: 46 YPDKEDAPAEDLIFDCRNRQWYIQATTCSKDVVILVDNSGSMAGMR 91
+P +D P++D+ + +NRQ ++ D+VI+V ++ S +R
Sbjct: 193 FPHIQDPPSDDICYATQNRQAAVKKIAPLSDLVIVVGSANSSNSVR 238
>sp|Q83NB2|ISPH_TROW8 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Tropheryma
whipplei (strain TW08/27) GN=ispH PE=3 SV=1
Length = 313
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 27/46 (58%)
Query: 46 YPDKEDAPAEDLIFDCRNRQWYIQATTCSKDVVILVDNSGSMAGMR 91
+P +D P++D+ + +NRQ ++ D+VI+V ++ S +R
Sbjct: 184 FPHIQDPPSDDICYATQNRQAAVKKIAPLSDLVIVVGSANSSNSVR 229
>sp|A6NCI4|VWA3A_HUMAN von Willebrand factor A domain-containing protein 3A OS=Homo
sapiens GN=VWA3A PE=2 SV=3
Length = 1184
Score = 32.3 bits (72), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 51/124 (41%), Gaps = 14/124 (11%)
Query: 4 HDDVRAGLMWSEGLDEVFRENYMADPTLLWQYFGSAKGFLRTYPDKEDAPAEDLIFDCRN 63
H+ W +G +N DP L++Y +R Y + E L R
Sbjct: 451 HEKAMIQFEWHDGT----VKNIHVDPPFLYKYQQQLSRAMRMYERR----IEWLSLASR- 501
Query: 64 RQWYIQATTCSKDVVILVDNSGSMAGMRNTTAKLVLHSLL-QTFSNNDFINIFKFNLTVD 122
R W T C K VV+L+D S + + M + L LL + SN D N+ F T++
Sbjct: 502 RIW---GTVCEKRVVVLLDISATNS-MYIIHIQHSLRLLLEEQLSNKDCFNLIAFGSTIE 557
Query: 123 TIVP 126
+ P
Sbjct: 558 SWRP 561
>sp|A1A5Q7|VWA3A_RAT von Willebrand factor A domain-containing protein 3A OS=Rattus
norvegicus GN=Vwa3a PE=2 SV=1
Length = 737
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 54/127 (42%), Gaps = 20/127 (15%)
Query: 4 HDDVRAGLMWSEGLDEVFRENYMADPTLLWQYFGSAKGFLRTYPDKEDAPAEDLIFDCRN 63
H+ W +G +N DP +L++Y ++ Y + + L R
Sbjct: 424 HEKAMVQFEWHDGT----VKNIHVDPPVLFEYQKQLGKAVQIYEKR----LQWLSLTSR- 474
Query: 64 RQWYIQATTCSKDVVILVD----NSGSMAGMRNTTAKLVLHSLLQTFSNNDFINIFKFNL 119
R W T C + VVIL+D NS + ++++ L L + SN D+ NI F
Sbjct: 475 RFW---GTVCQRRVVILLDVSVTNSMFIIHIQHSLRLL----LEEQLSNKDYFNIIAFGS 527
Query: 120 TVDTIVP 126
TV++ P
Sbjct: 528 TVESWRP 534
>sp|Q61704|ITIH3_MOUSE Inter-alpha-trypsin inhibitor heavy chain H3 OS=Mus musculus
GN=Itih3 PE=1 SV=3
Length = 889
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 73 CSKDVVILVDNSGSMAGMRNTTAKLVLHSLLQTFSNNDFINIFKFNLTVDT 123
K++V ++D SGSM+G + + L +L +D++N F+ V T
Sbjct: 281 VPKNIVFVIDVSGSMSGRKIQQTREALLKILDDVKEDDYLNFILFSTDVTT 331
>sp|Q9X781|ISPH_MYCLE 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Mycobacterium
leprae (strain TN) GN=ispH PE=3 SV=2
Length = 332
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 27/46 (58%)
Query: 46 YPDKEDAPAEDLIFDCRNRQWYIQATTCSKDVVILVDNSGSMAGMR 91
+P +D P++D+ + +NRQ ++A ++VI+V + S +R
Sbjct: 204 FPKLQDPPSDDICYATQNRQVAVKAMAPECELVIVVGSRNSSNSVR 249
>sp|Q4WYG2|NRPS5_ASPFU Nonribosomal peptide synthetase 5 OS=Neosartorya fumigata (strain
ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=NRPS5
PE=3 SV=2
Length = 2202
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 40 KGFLRTYPDKEDAPAEDLIFDCRNRQWYIQATTCSKDVVILVDNSGSMAGMRNTTAKLVL 99
+G L + P + +A L FDC ++ + +T C ++L D ++ + A +
Sbjct: 1255 EGRLYSRPGQRNAQMLSLGFDCCIKEVF--STICFGATLVLKDPENPISHLARVDATMAT 1312
Query: 100 HSLLQTFSNNDFINI 114
SLL T D+ N+
Sbjct: 1313 PSLLATLEPTDYPNL 1327
>sp|A4T986|ISPH_MYCGI 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Mycobacterium
gilvum (strain PYR-GCK) GN=ispH PE=3 SV=1
Length = 333
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 27/46 (58%)
Query: 46 YPDKEDAPAEDLIFDCRNRQWYIQATTCSKDVVILVDNSGSMAGMR 91
+P +D P++D+ + +NRQ ++A ++VI+V + S +R
Sbjct: 204 FPTLQDPPSDDICYATQNRQVAVKAMAPECELVIVVGSKNSSNSVR 249
>sp|Q1B4H4|ISPH_MYCSS 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Mycobacterium
sp. (strain MCS) GN=ispH PE=3 SV=1
Length = 333
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 27/46 (58%)
Query: 46 YPDKEDAPAEDLIFDCRNRQWYIQATTCSKDVVILVDNSGSMAGMR 91
+P +D P++D+ + +NRQ ++A ++VI+V + S +R
Sbjct: 204 FPTLQDPPSDDICYATQNRQVAVKAMAPECELVIVVGSKNSSNSVR 249
>sp|A1UKL5|ISPH_MYCSK 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Mycobacterium
sp. (strain KMS) GN=ispH PE=3 SV=1
Length = 333
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 27/46 (58%)
Query: 46 YPDKEDAPAEDLIFDCRNRQWYIQATTCSKDVVILVDNSGSMAGMR 91
+P +D P++D+ + +NRQ ++A ++VI+V + S +R
Sbjct: 204 FPTLQDPPSDDICYATQNRQVAVKAMAPECELVIVVGSKNSSNSVR 249
>sp|A1TE06|ISPH_MYCVP 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Mycobacterium
vanbaalenii (strain DSM 7251 / PYR-1) GN=ispH PE=3 SV=1
Length = 337
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 27/46 (58%)
Query: 46 YPDKEDAPAEDLIFDCRNRQWYIQATTCSKDVVILVDNSGSMAGMR 91
+P +D P++D+ + +NRQ ++A ++VI+V + S +R
Sbjct: 208 FPTLQDPPSDDICYATQNRQVAVKAMAPECELVIVVGSKNSSNSVR 253
>sp|A3Q4N0|ISPH_MYCSJ 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Mycobacterium
sp. (strain JLS) GN=ispH PE=3 SV=1
Length = 333
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 27/46 (58%)
Query: 46 YPDKEDAPAEDLIFDCRNRQWYIQATTCSKDVVILVDNSGSMAGMR 91
+P +D P++D+ + +NRQ ++A ++VI+V + S +R
Sbjct: 204 FPTLQDPPSDDICYATQNRQVAVKAMAPECELVIVVGSKNSSNSVR 249
>sp|A0LW20|ISPH_ACIC1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Acidothermus
cellulolyticus (strain ATCC 43068 / 11B) GN=ispH PE=3
SV=1
Length = 340
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 9/57 (15%)
Query: 44 RTYPDKEDAPAEDLIFDCRNRQWYIQATTCSKDVVILVDNSGSMAGMRNT--TAKLV 98
R +P D P++D+ + +NRQ ++ D+VI+V G RN+ +A+LV
Sbjct: 189 RRFPQLIDPPSDDICYATQNRQAAVKRIAAIADLVIVV-------GSRNSSNSARLV 238
>sp|P72772|CHLD_SYNY3 Magnesium-chelatase subunit ChlD OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=chlD PE=3 SV=1
Length = 676
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 77 VVILVDNSGSMAGMRNTTAK-LVLHSLLQTFSNNDFINIFKF 117
+V LVD SGSMA R AK V+ L + + N D +++ F
Sbjct: 482 IVFLVDASGSMALNRMQAAKGAVMQLLTEAYENRDQVSLIPF 523
>sp|Q9UGM3|DMBT1_HUMAN Deleted in malignant brain tumors 1 protein OS=Homo sapiens GN=DMBT1
PE=1 SV=2
Length = 2413
Score = 30.4 bits (67), Expect = 2.9, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 35 YFGSAKGFLRTYPDKEDAPAEDLIFDCRNRQWY 67
YFGS G + T D E + E ++ CRNR W+
Sbjct: 1940 YFGSGSGPI-TLDDVECSGTESTLWQCRNRGWF 1971
>sp|O07345|CHLD_SYNE7 Magnesium-chelatase subunit ChlD OS=Synechococcus elongatus (strain
PCC 7942) GN=chlD PE=3 SV=2
Length = 677
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 60 DCRNRQWYIQATTCSKDVVILVDNSGSMAGMRNTTAK-LVLHSLLQTFSNNDFINIFKF 117
D R++Q +A V+ LVD SGSMA R +AK V+ L + + N D + + F
Sbjct: 468 DIRSKQLVRKAGAL---VIFLVDASGSMALNRMQSAKGAVIRLLTEAYENRDQVALIPF 523
>sp|Q58221|Y811_METJA Uncharacterized protein MJ0811 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0811 PE=4 SV=1
Length = 439
Score = 30.4 bits (67), Expect = 3.6, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 10/63 (15%)
Query: 42 FLRTYPDKEDAPAEDLIFDCRNRQWYIQATTCSKDVVILVDNSGSMAGMRNTTAKLVLHS 101
FLR + DK+ LI+D +N+ ++IL+D+SGSM G R K V S
Sbjct: 249 FLRRFVDKKL-----LIYDIQNK-----LEKQKGPIIILLDHSGSMYGDREIWGKAVALS 298
Query: 102 LLQ 104
+++
Sbjct: 299 IIE 301
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.137 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,147,036
Number of Sequences: 539616
Number of extensions: 1976320
Number of successful extensions: 4199
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 4134
Number of HSP's gapped (non-prelim): 64
length of query: 139
length of database: 191,569,459
effective HSP length: 104
effective length of query: 35
effective length of database: 135,449,395
effective search space: 4740728825
effective search space used: 4740728825
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)