Query psy9195
Match_columns 139
No_of_seqs 140 out of 1371
Neff 8.0
Searched_HMMs 29240
Date Fri Aug 16 21:20:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9195.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9195hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fx5_A VON willebrand factor t 98.9 1.6E-09 5.3E-14 88.5 7.5 63 73-137 76-140 (464)
2 2x31_A Magnesium-chelatase 60 98.8 2.4E-09 8E-14 76.5 4.7 57 73-129 4-62 (189)
3 3ibs_A Conserved hypothetical 98.8 1.5E-08 5.1E-13 73.6 7.0 57 73-130 10-71 (218)
4 3zqk_A VON willebrand factor; 98.7 2.9E-08 9.9E-13 71.8 7.6 56 73-128 20-78 (199)
5 1ijb_A VON willebrand factor; 98.7 1.9E-08 6.4E-13 72.9 6.6 56 73-128 12-70 (202)
6 2xgg_A Microneme protein 2; A/ 98.7 3.5E-08 1.2E-12 70.1 7.0 57 73-129 16-75 (178)
7 1atz_A VON willebrand factor; 98.7 4E-08 1.4E-12 70.1 6.7 55 73-127 4-61 (189)
8 1mf7_A Integrin alpha M; cell 98.7 3.9E-08 1.3E-12 70.4 6.1 56 73-128 4-60 (194)
9 1mjn_A Integrin alpha-L; rossm 98.6 7.7E-08 2.6E-12 68.4 6.7 55 74-128 2-57 (179)
10 1n3y_A Integrin alpha-X; alpha 98.6 9E-08 3.1E-12 68.4 6.7 56 73-128 8-64 (198)
11 4hqf_A Thrombospondin-related 98.6 1.2E-07 4E-12 72.0 7.6 57 73-129 20-80 (281)
12 1q0p_A Complement factor B; VO 98.6 9.6E-08 3.3E-12 69.3 5.8 56 73-128 14-72 (223)
13 4hqo_A Sporozoite surface prot 98.5 1.6E-07 5.4E-12 71.0 6.8 57 73-129 17-77 (266)
14 2odp_A Complement C2; C3/C5 co 98.5 1.3E-07 4.3E-12 77.0 6.3 57 73-129 8-67 (509)
15 1v7p_C Integrin alpha-2; snake 98.5 4.6E-07 1.6E-11 65.2 7.3 53 74-128 6-61 (200)
16 1shu_X Anthrax toxin receptor 98.4 5.4E-07 1.8E-11 63.4 6.8 54 73-129 5-61 (182)
17 1pt6_A Integrin alpha-1; cell 98.4 6.9E-07 2.4E-11 64.8 7.4 54 73-128 6-62 (213)
18 3n2n_F Anthrax toxin receptor 98.4 5.5E-07 1.9E-11 63.5 6.5 56 73-129 6-62 (185)
19 2b2x_A Integrin alpha-1; compu 98.4 7.9E-07 2.7E-11 65.1 7.0 54 73-128 21-77 (223)
20 3rag_A Uncharacterized protein 98.4 4.7E-07 1.6E-11 68.1 5.6 57 73-130 133-196 (242)
21 3hrz_D Complement factor B; se 98.2 1.4E-06 4.7E-11 73.8 6.0 56 74-129 243-301 (741)
22 1rrk_A Complement factor B; BB 98.2 1.5E-06 5E-11 70.4 5.1 52 75-126 2-56 (497)
23 2ww8_A RRGA, cell WALL surface 98.1 3.1E-06 1E-10 74.0 5.0 50 73-122 223-280 (893)
24 2x5n_A SPRPN10, 26S proteasome 98.0 6.8E-06 2.3E-10 59.5 5.7 56 75-130 3-67 (192)
25 4b4t_W RPN10, 26S proteasome r 98.0 1.4E-05 4.7E-10 61.0 6.8 55 76-130 5-68 (268)
26 3k6s_A Integrin alpha-X; cell 98.0 1.3E-05 4.4E-10 71.5 7.5 55 74-128 130-185 (1095)
27 1jey_B KU80; double-strand DNA 97.5 0.00016 5.6E-09 60.1 6.2 47 75-121 8-63 (565)
28 1yvr_A RO autoantigen, 60-kDa 96.7 0.00064 2.2E-08 56.1 2.4 55 73-128 367-425 (538)
29 1jey_A KU70; double-strand DNA 96.6 0.0029 9.8E-08 53.1 5.9 48 75-122 36-93 (609)
30 4dah_A Sporulation kinase D; a 96.5 0.0055 1.9E-07 43.7 5.9 53 15-72 54-106 (217)
31 3e4o_A C4-dicarboxylate transp 96.2 0.0089 3E-07 45.9 6.0 79 2-82 80-163 (305)
32 3by9_A Sensor protein; histidi 96.2 0.011 3.8E-07 42.8 6.1 80 2-83 38-123 (260)
33 2nvo_A RO sixty-related protei 96.1 0.0034 1.2E-07 51.9 3.4 51 73-123 361-417 (535)
34 3lif_A Putative diguanylate cy 95.4 0.015 5.2E-07 42.2 4.3 52 16-72 55-106 (254)
35 2nut_A Protein transport prote 95.4 0.028 9.7E-07 48.4 6.5 49 74-124 132-180 (769)
36 3lid_A Putative sensory BOX/gg 95.1 0.015 5.2E-07 44.1 3.5 73 2-74 45-126 (295)
37 1m2o_A SEC23, protein transpor 94.7 0.064 2.2E-06 46.2 6.6 49 74-124 121-169 (768)
38 2iue_A Pactolus I-domain; memb 94.6 0.053 1.8E-06 39.7 5.1 47 73-120 2-51 (212)
39 3c8c_A Methyl-accepting chemot 94.3 0.023 7.8E-07 40.2 2.6 52 16-72 47-100 (240)
40 3lic_A Sensor protein; PDC fol 93.8 0.059 2E-06 39.2 3.9 61 15-75 56-129 (274)
41 1pcx_A Protein transport prote 93.7 0.063 2.2E-06 46.5 4.5 51 74-124 187-241 (810)
42 3efo_B SEC24 related gene fami 92.0 0.27 9.1E-06 42.4 6.0 51 74-124 177-235 (770)
43 1m2v_B SEC24, protein transpor 91.9 0.11 3.7E-06 45.8 3.5 51 74-124 303-357 (926)
44 3eh2_A Protein transport prote 91.4 0.34 1.2E-05 41.7 6.0 51 74-124 173-231 (766)
45 3lib_A Hypothetical sensory tr 90.8 0.22 7.4E-06 36.7 3.8 60 15-74 55-134 (290)
46 3t3p_B Integrin beta-3; integr 90.4 0.15 5.1E-06 41.6 2.7 51 69-120 106-159 (472)
47 3v4v_B Integrin beta-7; cell a 90.0 0.18 6.2E-06 41.4 2.9 51 69-120 127-180 (503)
48 3eh1_A Protein transport prote 89.9 0.29 9.9E-06 42.1 4.3 51 74-124 160-213 (751)
49 3vi3_B Integrin beta-1; beta p 89.7 0.22 7.6E-06 40.4 3.2 51 69-120 117-170 (454)
50 3li9_A Hypothetical sensory tr 89.5 0.32 1.1E-05 35.7 3.8 59 15-73 56-134 (291)
51 3k6s_B Integrin beta-2; cell r 89.4 0.11 3.9E-06 44.2 1.3 52 69-121 99-153 (687)
52 3fcs_B Integrin beta-3; beta p 89.2 0.11 3.8E-06 44.3 1.1 52 69-121 106-160 (690)
53 2bas_A YKUI protein; EAL domai 87.2 0.27 9.4E-06 39.2 2.2 67 16-83 317-396 (431)
54 1p0z_A Sensor kinase CITA; tra 59.4 17 0.00058 23.4 4.7 66 2-73 20-87 (131)
55 3v2d_N 50S ribosomal protein L 36.5 76 0.0026 21.3 5.1 36 77-115 12-55 (140)
56 4b6a_O 60S ribosomal protein L 33.8 39 0.0013 24.2 3.4 31 78-115 6-36 (199)
57 3r8s_J 50S ribosomal protein L 30.8 70 0.0024 21.6 4.2 36 77-115 14-57 (142)
58 2ftc_H L13MT, MRP-L13, 39S rib 27.8 88 0.003 21.2 4.3 36 77-115 17-60 (148)
59 1j3a_A 50S ribosomal protein L 26.2 46 0.0016 22.4 2.6 30 79-115 2-31 (142)
60 3by8_A Sensor protein DCUS; hi 26.0 1.1E+02 0.0039 19.6 4.6 46 2-48 25-73 (142)
61 2zjr_G 50S ribosomal protein L 22.0 1.1E+02 0.0037 21.4 3.9 36 77-115 40-83 (174)
62 1l4d_B Streptokinase; plasmino 21.6 1.7E+02 0.0057 18.9 4.4 41 84-124 42-85 (122)
63 4a17_I RPL13A, 60S ribosomal p 21.5 62 0.0021 23.1 2.6 31 78-115 5-35 (198)
64 1vq8_J 50S ribosomal protein L 21.0 79 0.0027 21.4 3.0 31 78-115 9-39 (145)
No 1
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=98.94 E-value=1.6e-09 Score=88.53 Aligned_cols=63 Identities=22% Similarity=0.298 Sum_probs=56.9
Q ss_pred ccccEEEEEcCCCCCC--CchHHHHHHHHHHHHhhCCCCCEEEEEEeCCceeeeeecCCCCeeeecc
Q psy9195 73 CSKDVVILVDNSGSMA--GMRNTTAKLVLHSLLQTFSNNDFINIFKFNLTVDTIVPCLGNYSLVQTL 137 (139)
Q Consensus 73 ~~~~vvi~iD~sgSm~--g~~l~~ak~~~~~~l~~l~~~d~~~v~~f~~~~~~~~~~~~~~~lv~a~ 137 (139)
.+.+++|+||+||||. +.+++.+|.++..+++.|.++|+|+|+.|++.+..++|+... |++++
T Consensus 76 ~~~dvv~VLD~SGSM~~~~~rl~~ak~a~~~ll~~L~~~drv~lV~Fs~~a~~~~p~t~~--l~~~~ 140 (464)
T 4fx5_A 76 SENVEVIIIDCSGSMDYPRTKMMAAKEATKVAIDTLTDGAFFAVVAGTEGARVVYPTGGQ--LLRAD 140 (464)
T ss_dssp CCEEEEEEEECCGGGGTTTHHHHHHHHHHHHHHHHSCTTCEEEEEEESSSEEEEESSSSS--CEECS
T ss_pred CCceEEEEEEcCcccCCCCchHHHHHHHHHHHHHhCCCCCEEEEEEEcCceEEEecCCcc--cccCC
Confidence 4578999999999999 999999999999999999999999999999999999998754 55554
No 2
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus}
Probab=98.85 E-value=2.4e-09 Score=76.47 Aligned_cols=57 Identities=23% Similarity=0.276 Sum_probs=48.7
Q ss_pred ccccEEEEEcCCCCCCCchHHHHHHHHHHHHhhC-CCCCEEEEEEeCC-ceeeeeecCC
Q psy9195 73 CSKDVVILVDNSGSMAGMRNTTAKLVLHSLLQTF-SNNDFINIFKFNL-TVDTIVPCLG 129 (139)
Q Consensus 73 ~~~~vvi~iD~sgSm~g~~l~~ak~~~~~~l~~l-~~~d~~~v~~f~~-~~~~~~~~~~ 129 (139)
.+.++++++|+||||.|.+++.+|.++..+++.+ .++|+++|+.|++ ....+.|...
T Consensus 4 ~~~~vv~vlD~SgSM~~~~~~~~k~~~~~~~~~~~~~~~~v~lv~f~~~~~~~~~~~~~ 62 (189)
T 2x31_A 4 SDRVLIFAVDASGSAAVARLSEAKGAVELLLGRAYAARDHVSLITFRGTAAQVLLQPSR 62 (189)
T ss_dssp SCCEEEEEEECCTTSCC--CHHHHHHHHHHHHHSCTTTSCCCEEEESBSCCCBCTTTCS
T ss_pred CCeEEEEEEECCCCCCchHHHHHHHHHHHHHHHhcCCCcEEEEEEECCCCceEecCCCC
Confidence 5688999999999999999999999999999887 8999999999997 6666666654
No 3
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=98.77 E-value=1.5e-08 Score=73.60 Aligned_cols=57 Identities=26% Similarity=0.329 Sum_probs=51.4
Q ss_pred ccccEEEEEcCCCCCCCc-----hHHHHHHHHHHHHhhCCCCCEEEEEEeCCceeeeeecCCC
Q psy9195 73 CSKDVVILVDNSGSMAGM-----RNTTAKLVLHSLLQTFSNNDFINIFKFNLTVDTIVPCLGN 130 (139)
Q Consensus 73 ~~~~vvi~iD~sgSm~g~-----~l~~ak~~~~~~l~~l~~~d~~~v~~f~~~~~~~~~~~~~ 130 (139)
.+.++++++|+||||.+. +++.+|.++..+++.+. +|+++|+.|++++..+.|+..+
T Consensus 10 ~~~~iv~vlD~SgSM~~~d~~~~r~~~ak~~~~~~~~~~~-~~~v~lv~F~~~~~~~~~~~~~ 71 (218)
T 3ibs_A 10 KGVEVIIALDISNSMLAQDVQPSRLEKAKRLISRLVDELD-NDKVGMIVFAGDAFTQLPITSD 71 (218)
T ss_dssp CCCEEEEEEECSGGGGCCSSSSCHHHHHHHHHHHHHHTCS-SCEEEEEEESSSEEEEEEEESC
T ss_pred CCCcEEEEEECCcCcccccCCcCHHHHHHHHHHHHHHhCC-CCeEEEEEECCCceEeCCCCCC
Confidence 568899999999999875 89999999999999986 9999999999999999887643
No 4
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A*
Probab=98.74 E-value=2.9e-08 Score=71.75 Aligned_cols=56 Identities=13% Similarity=0.274 Sum_probs=52.0
Q ss_pred ccccEEEEEcCCCCCCCchHHHHHHHHHHHHhhC---CCCCEEEEEEeCCceeeeeecC
Q psy9195 73 CSKDVVILVDNSGSMAGMRNTTAKLVLHSLLQTF---SNNDFINIFKFNLTVDTIVPCL 128 (139)
Q Consensus 73 ~~~~vvi~iD~sgSm~g~~l~~ak~~~~~~l~~l---~~~d~~~v~~f~~~~~~~~~~~ 128 (139)
.+.+++|++|.||||.+.+++.+|.+++.+++.| .++++|+|+.|+++++..+|+.
T Consensus 20 ~~~DivfvlD~S~Sm~~~~~~~~k~~~~~~~~~l~~~~~~~rv~vv~fs~~~~~~~~l~ 78 (199)
T 3zqk_A 20 MVLDVAFVLEGSDKIGEADFNRSKEFMEEVIQRMDVGQDSIHVTVLQYSYMVTVEYPFS 78 (199)
T ss_dssp CCCEEEEEEECCTTTCHHHHHHHHHHHHHHHHHSCBSTTSBEEEEEEESSSEEEEECTT
T ss_pred CCcCEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEEEEECCcccEEEecC
Confidence 5689999999999999999999999999999999 4899999999999999988865
No 5
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C
Probab=98.74 E-value=1.9e-08 Score=72.92 Aligned_cols=56 Identities=11% Similarity=0.146 Sum_probs=51.2
Q ss_pred ccccEEEEEcCCCCCCCchHHHHHHHHHHHHhhCC---CCCEEEEEEeCCceeeeeecC
Q psy9195 73 CSKDVVILVDNSGSMAGMRNTTAKLVLHSLLQTFS---NNDFINIFKFNLTVDTIVPCL 128 (139)
Q Consensus 73 ~~~~vvi~iD~sgSm~g~~l~~ak~~~~~~l~~l~---~~d~~~v~~f~~~~~~~~~~~ 128 (139)
.+.+++|++|.||||.+.+++.+|..+..+++.|. .+++++|+.|++.+...+|+.
T Consensus 12 ~~~divfvlD~SgSm~~~~~~~~k~~~~~~v~~l~~~~~~~rv~vv~fs~~~~~~~~l~ 70 (202)
T 1ijb_A 12 RLLDLVFLLDGSSRLSEAEFEVLKAFVVDMMERLRVSQKWVRVAVVEYHDGSHAYIGLK 70 (202)
T ss_dssp SCEEEEEEEECBTTSCHHHHHHHHHHHHHHHHTBCBSTTSEEEEEEEESSSEEEEECTT
T ss_pred CcccEEEEEECCCCCCHHHHHHHHHHHHHHHHhcccCCCceEEEEEEECCCceEEEecC
Confidence 46889999999999998899999999999999997 679999999999999888765
No 6
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=98.70 E-value=3.5e-08 Score=70.05 Aligned_cols=57 Identities=19% Similarity=0.202 Sum_probs=51.1
Q ss_pred ccccEEEEEcCCCCCCCchHHHHHHHHHHHHhhCCC---CCEEEEEEeCCceeeeeecCC
Q psy9195 73 CSKDVVILVDNSGSMAGMRNTTAKLVLHSLLQTFSN---NDFINIFKFNLTVDTIVPCLG 129 (139)
Q Consensus 73 ~~~~vvi~iD~sgSm~g~~l~~ak~~~~~~l~~l~~---~d~~~v~~f~~~~~~~~~~~~ 129 (139)
.+.+++|++|.||||.+.+++.+|.++..+++.|.. +++++|+.|++++...+|+..
T Consensus 16 ~~~divfvlD~SgSm~~~~~~~~k~~~~~~i~~l~~~~~~~rv~vv~F~~~~~~~~~l~~ 75 (178)
T 2xgg_A 16 NQLDICFLIDSSGSIGIQNFRLVKQFLHTFLMVLPIGPEEVNNAVVTYSTDVHLQWDLQS 75 (178)
T ss_dssp TCEEEEEEEECCTTTCHHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEEEEECTTS
T ss_pred CCeeEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCceEEEEeCCC
Confidence 368899999999999988999999999999999873 499999999999998888754
No 7
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A
Probab=98.68 E-value=4e-08 Score=70.13 Aligned_cols=55 Identities=16% Similarity=0.225 Sum_probs=49.9
Q ss_pred ccccEEEEEcCCCCCCCchHHHHHHHHHHHHhhCCC---CCEEEEEEeCCceeeeeec
Q psy9195 73 CSKDVVILVDNSGSMAGMRNTTAKLVLHSLLQTFSN---NDFINIFKFNLTVDTIVPC 127 (139)
Q Consensus 73 ~~~~vvi~iD~sgSm~g~~l~~ak~~~~~~l~~l~~---~d~~~v~~f~~~~~~~~~~ 127 (139)
.+.+++|++|.||||.+.+++.+|..+..+++.|.. +++++|+.|++.+...+|+
T Consensus 4 ~~~div~vlD~SgSm~~~~~~~~k~~~~~~~~~l~~~~~~~rv~lv~f~~~~~~~~~l 61 (189)
T 1atz_A 4 QPLDVILLLDGSSSFPASYFDEMKSFAKAFISKANIGPRLTQVSVLQYGSITTIDVPW 61 (189)
T ss_dssp CCEEEEEEEECSSSSCHHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEEEEECT
T ss_pred CceeEEEEEeCCCCCChhhHHHHHHHHHHHHHhcCcCCCCeEEEEEEECCcceEEEec
Confidence 457899999999999999999999999999999873 4799999999999998887
No 8
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G
Probab=98.66 E-value=3.9e-08 Score=70.43 Aligned_cols=56 Identities=13% Similarity=0.269 Sum_probs=50.3
Q ss_pred ccccEEEEEcCCCCCCCchHHHHHHHHHHHHhhCC-CCCEEEEEEeCCceeeeeecC
Q psy9195 73 CSKDVVILVDNSGSMAGMRNTTAKLVLHSLLQTFS-NNDFINIFKFNLTVDTIVPCL 128 (139)
Q Consensus 73 ~~~~vvi~iD~sgSm~g~~l~~ak~~~~~~l~~l~-~~d~~~v~~f~~~~~~~~~~~ 128 (139)
.+.+++|++|.||||.+.+++.+|.++..+++.|. ++++++|+.|++.+...+|+.
T Consensus 4 ~~~div~vlD~SgSm~~~~~~~~k~~~~~~~~~l~~~~~~v~vv~f~~~~~~~~~l~ 60 (194)
T 1mf7_A 4 EDSDIAFLIDGSGSIIPHDFRRMKEFVSTVMEQLKKSKTLFSLMQYSEEFRIHFTFK 60 (194)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHCCTTEEEEEEEESSSEEEEECHH
T ss_pred CCeeEEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEecCCceEEEecC
Confidence 45789999999999999899999999999999996 679999999999999887764
No 9
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ...
Probab=98.62 E-value=7.7e-08 Score=68.40 Aligned_cols=55 Identities=18% Similarity=0.153 Sum_probs=49.1
Q ss_pred cccEEEEEcCCCCCCCchHHHHHHHHHHHHhhCCC-CCEEEEEEeCCceeeeeecC
Q psy9195 74 SKDVVILVDNSGSMAGMRNTTAKLVLHSLLQTFSN-NDFINIFKFNLTVDTIVPCL 128 (139)
Q Consensus 74 ~~~vvi~iD~sgSm~g~~l~~ak~~~~~~l~~l~~-~d~~~v~~f~~~~~~~~~~~ 128 (139)
+.+++|++|.||||.+.+++.+|..+..+++.|.+ +++++|+.|++.+...+|..
T Consensus 2 ~~divfvlD~S~Sm~~~~~~~~k~~~~~~~~~l~~~~~rv~vv~fs~~~~~~~~l~ 57 (179)
T 1mjn_A 2 NVDLVFLFDGSMSLQPDEFQKILDFMKDVMKKCSNTSYQFAAVQFSTSYKTEFDFS 57 (179)
T ss_dssp CEEEEEEEECBTTCCHHHHHHHHHHHHHHHHHTTTSSEEEEEEEESSSEEEEECHH
T ss_pred CccEEEEEeCCCCCCHHHHHHHHHHHHHHHHHhCCCCeEEEEEEECCceeEEEcCc
Confidence 46899999999999998999999999999999965 46999999999999887764
No 10
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=98.60 E-value=9e-08 Score=68.44 Aligned_cols=56 Identities=20% Similarity=0.332 Sum_probs=50.6
Q ss_pred ccccEEEEEcCCCCCCCchHHHHHHHHHHHHhhC-CCCCEEEEEEeCCceeeeeecC
Q psy9195 73 CSKDVVILVDNSGSMAGMRNTTAKLVLHSLLQTF-SNNDFINIFKFNLTVDTIVPCL 128 (139)
Q Consensus 73 ~~~~vvi~iD~sgSm~g~~l~~ak~~~~~~l~~l-~~~d~~~v~~f~~~~~~~~~~~ 128 (139)
.+.++++++|.||||.+..+..++.+++.+++.| .++++++|+.|++.+...+|+.
T Consensus 8 ~~~div~vlD~SgSM~~~~~~~~~~~~~~~~~~l~~~~~~v~lv~f~~~~~~~~~~~ 64 (198)
T 1n3y_A 8 QEQDIVFLIDGSGSISSRNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQTHFTFE 64 (198)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHHHHHHHHTTSCTTTEEEEEEEESSSEEEEECHH
T ss_pred CCeeEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCccEEEecC
Confidence 4678999999999999888889999999999999 6999999999999998887753
No 11
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A
Probab=98.60 E-value=1.2e-07 Score=72.04 Aligned_cols=57 Identities=19% Similarity=0.172 Sum_probs=51.4
Q ss_pred ccccEEEEEcCCCCCCCchH-HHHHHHHHHHHhhCCC---CCEEEEEEeCCceeeeeecCC
Q psy9195 73 CSKDVVILVDNSGSMAGMRN-TTAKLVLHSLLQTFSN---NDFINIFKFNLTVDTIVPCLG 129 (139)
Q Consensus 73 ~~~~vvi~iD~sgSm~g~~l-~~ak~~~~~~l~~l~~---~d~~~v~~f~~~~~~~~~~~~ 129 (139)
.+.+++|+||.||||.+..+ +.+|.++..+++.|.. +++|+|+.|++++..++|...
T Consensus 20 ~~~div~vlD~SgSM~~~~~~~~~k~~~~~~v~~l~~~~~~~rvglv~Fs~~~~~~~~l~~ 80 (281)
T 4hqf_A 20 DEVDLYLLMDGSGSIRRHNWVNHAVPLAMKLIQQLNLNDNAIHLYASVFSNNAREIIRLHS 80 (281)
T ss_dssp SCEEEEEEEECCCCSSTHHHHHHHHHHHHHHHTTCCCCTTSEEEEEEEEETTEEEEEEECS
T ss_pred CceeEEEEEeCCCCcCHHHHHHHHHHHHHHHHHHhccCCCCcEEEEEEcCCCceEEEEccc
Confidence 46889999999999998766 8999999999999987 899999999999999888764
No 12
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=98.55 E-value=9.6e-08 Score=69.31 Aligned_cols=56 Identities=18% Similarity=0.182 Sum_probs=48.4
Q ss_pred ccccEEEEEcCCCCCCCchHHHHHHHHHHHHhhC---CCCCEEEEEEeCCceeeeeecC
Q psy9195 73 CSKDVVILVDNSGSMAGMRNTTAKLVLHSLLQTF---SNNDFINIFKFNLTVDTIVPCL 128 (139)
Q Consensus 73 ~~~~vvi~iD~sgSm~g~~l~~ak~~~~~~l~~l---~~~d~~~v~~f~~~~~~~~~~~ 128 (139)
.+.+++|++|.||||.+..++.+|.++..+++.| ..+++++|+.|++.+...+++.
T Consensus 14 ~~~div~vlD~SgSM~~~~~~~~k~~~~~~i~~l~~~~~~~~v~lv~f~~~~~~~~~~~ 72 (223)
T 1q0p_A 14 GSMNIYLVLDGSDSIGASNFTGAKKSLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVS 72 (223)
T ss_dssp -CEEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHTTTCCCEEEEEEESSSEEEEECTT
T ss_pred CceeEEEEEeCCCCCchHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCccceeeccc
Confidence 4688999999999999989999999999997655 4679999999999999887543
No 13
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=98.54 E-value=1.6e-07 Score=70.97 Aligned_cols=57 Identities=21% Similarity=0.215 Sum_probs=51.4
Q ss_pred ccccEEEEEcCCCCCCCchH-HHHHHHHHHHHhhCC---CCCEEEEEEeCCceeeeeecCC
Q psy9195 73 CSKDVVILVDNSGSMAGMRN-TTAKLVLHSLLQTFS---NNDFINIFKFNLTVDTIVPCLG 129 (139)
Q Consensus 73 ~~~~vvi~iD~sgSm~g~~l-~~ak~~~~~~l~~l~---~~d~~~v~~f~~~~~~~~~~~~ 129 (139)
.+.+++|+||.||||.+..+ +.+|.++..+++.|. ++++|+|+.|++.+..++|+..
T Consensus 17 ~~~DivfvlD~SgSM~~~~~~~~~k~~~~~lv~~l~~~~~~~rvglv~Fs~~~~~~~~l~~ 77 (266)
T 4hqo_A 17 EQVDLYLLVDGSGSIGYPNWITKVIPMLNGLINSLSLSRDTINLYMNLFGSYTTELIRLGS 77 (266)
T ss_dssp CCEEEEEEEECSTTTCHHHHHHTHHHHHHHHHHTCCBCTTSEEEEEEEESSSEEEEECTTS
T ss_pred CceeEEEEEECCCCcChhHHHHHHHHHHHHHHHHcccCCCCcEEEEEEecCCcceEEecCC
Confidence 56789999999999998888 589999999999998 8999999999999999888653
No 14
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Probab=98.52 E-value=1.3e-07 Score=77.04 Aligned_cols=57 Identities=16% Similarity=0.149 Sum_probs=52.4
Q ss_pred ccccEEEEEcCCCCCCCchHHHHHHHHHHHHhhC---CCCCEEEEEEeCCceeeeeecCC
Q psy9195 73 CSKDVVILVDNSGSMAGMRNTTAKLVLHSLLQTF---SNNDFINIFKFNLTVDTIVPCLG 129 (139)
Q Consensus 73 ~~~~vvi~iD~sgSm~g~~l~~ak~~~~~~l~~l---~~~d~~~v~~f~~~~~~~~~~~~ 129 (139)
.+.+++|++|.||||.+.+++.+|+++..+++.| .++++++|+.|+++++.++|...
T Consensus 8 ~~~divfvlD~SgSM~~~~~~~~k~~~~~l~~~l~~~~~~~rv~lv~f~~~~~~~~~l~~ 67 (509)
T 2odp_A 8 GHLNLYLLLDASQSVSENDFLIFKESASLMVDRIFSFEINVSVAIITFASEPKVLMSVLN 67 (509)
T ss_dssp SEEEEEEEEECSTTSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEEESSSEEEEECTTS
T ss_pred CCeeEEEEEeCCCccchhhHHHHHHHHHHHHHHhhccCCCceEEEEEccCCCceeEeccC
Confidence 4578999999999999999999999999999888 79999999999999999988763
No 15
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A
Probab=98.46 E-value=4.6e-07 Score=65.19 Aligned_cols=53 Identities=17% Similarity=0.236 Sum_probs=48.5
Q ss_pred cccEEEEEcCCCCCCCchHHHHHHHHHHHHhhCC---CCCEEEEEEeCCceeeeeecC
Q psy9195 74 SKDVVILVDNSGSMAGMRNTTAKLVLHSLLQTFS---NNDFINIFKFNLTVDTIVPCL 128 (139)
Q Consensus 74 ~~~vvi~iD~sgSm~g~~l~~ak~~~~~~l~~l~---~~d~~~v~~f~~~~~~~~~~~ 128 (139)
+.+++|++|.||||. .++.+|..+..+++.|. ++++++|+.|++++...+|+.
T Consensus 6 ~~div~vlD~SgSm~--~~~~~k~~~~~~~~~l~~~~~~~rvglv~f~~~~~~~~~l~ 61 (200)
T 1v7p_C 6 LIDVVVVCDESNSIY--PWDAVKNFLEKFVQGLDIGPTKTQVGLIQYANNPRVVFNLN 61 (200)
T ss_dssp CEEEEEEEECCTTCC--CHHHHHHHHHHHHHTSCBSTTSEEEEEEEESSSEEEEECTT
T ss_pred cccEEEEEECCCCcc--cHHHHHHHHHHHHHhcCCCCCceEEEEEEECCCceEEEeCC
Confidence 578999999999997 48899999999999996 799999999999999988876
No 16
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*
Probab=98.42 E-value=5.4e-07 Score=63.42 Aligned_cols=54 Identities=20% Similarity=0.271 Sum_probs=42.8
Q ss_pred ccccEEEEEcCCCCCCCchH---HHHHHHHHHHHhhCCCCCEEEEEEeCCceeeeeecCC
Q psy9195 73 CSKDVVILVDNSGSMAGMRN---TTAKLVLHSLLQTFSNNDFINIFKFNLTVDTIVPCLG 129 (139)
Q Consensus 73 ~~~~vvi~iD~sgSm~g~~l---~~ak~~~~~~l~~l~~~d~~~v~~f~~~~~~~~~~~~ 129 (139)
.+.++++++|.||||.+... +.++.++..+ +.++++++|+.|++......|+..
T Consensus 5 ~~~dvv~vlD~SgSM~~~~~~~~~~~~~~~~~~---~~~~~~v~lv~f~~~~~~~~~~~~ 61 (182)
T 1shu_X 5 RAFDLYFVLDKSGSVANNWIEIYNFVQQLAERF---VSPEMRLSFIVFSSQATIILPLTG 61 (182)
T ss_dssp SCEEEEEEEECSGGGGGGHHHHHHHHHHHHHHC---CCTTEEEEEEEESSSEEEEEEEEC
T ss_pred CceeEEEEEECCCCcccCHHHHHHHHHHHHHHh---cCCCceEEEEEeCCCceEEECCCC
Confidence 56789999999999988654 4455555444 458999999999999999888764
No 17
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=98.42 E-value=6.9e-07 Score=64.85 Aligned_cols=54 Identities=20% Similarity=0.286 Sum_probs=47.9
Q ss_pred ccccEEEEEcCCCCCCCchHHHHHHHHHHHHhhCC---CCCEEEEEEeCCceeeeeecC
Q psy9195 73 CSKDVVILVDNSGSMAGMRNTTAKLVLHSLLQTFS---NNDFINIFKFNLTVDTIVPCL 128 (139)
Q Consensus 73 ~~~~vvi~iD~sgSm~g~~l~~ak~~~~~~l~~l~---~~d~~~v~~f~~~~~~~~~~~ 128 (139)
.+.+++|++|.||||. .++.+|..+..+++.|. ++++++|+.|++.+...+|+.
T Consensus 6 ~~~div~vlD~SgSm~--~~~~~k~~~~~~~~~l~~~~~~~~v~lv~F~~~~~~~~~l~ 62 (213)
T 1pt6_A 6 TQLDIVIVLDGSNSIY--PWDSVTAFLNDLLKRMDIGPKQTQVGIVQYGENVTHEFNLN 62 (213)
T ss_dssp -CEEEEEEEECCTTCC--CHHHHHHHHHHHHTTSCBSTTSBEEEEEEESSSEEEEECTT
T ss_pred CCccEEEEEECCCChh--hHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCCccEEEecc
Confidence 4678999999999997 48899999999999885 899999999999999988873
No 18
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=98.41 E-value=5.5e-07 Score=63.52 Aligned_cols=56 Identities=16% Similarity=0.157 Sum_probs=43.9
Q ss_pred ccccEEEEEcCCCCCCCchHHHHHHHHHHHHhh-CCCCCEEEEEEeCCceeeeeecCC
Q psy9195 73 CSKDVVILVDNSGSMAGMRNTTAKLVLHSLLQT-FSNNDFINIFKFNLTVDTIVPCLG 129 (139)
Q Consensus 73 ~~~~vvi~iD~sgSm~g~~l~~ak~~~~~~l~~-l~~~d~~~v~~f~~~~~~~~~~~~ 129 (139)
.+.++++++|.||||.+. ....+..++.++.. +.++++++|+.|++.++.++|...
T Consensus 6 ~~~div~vlD~SgSM~~~-~~~~~~~~~~~~~~~~~~~~~v~lv~f~~~~~~~~~l~~ 62 (185)
T 3n2n_F 6 GGFDLYFILDKSGSVLHH-WNEIYYFVEQLAHKFISPQLRMSFIVFSTRGTTLMKLTE 62 (185)
T ss_dssp SEEEEEEEEECSGGGGGG-HHHHHHHHHHHHHHCCCTTEEEEEEEESSSEEEEEEEEC
T ss_pred CCeeEEEEEeCCCChhhh-HHHHHHHHHHHHHHhCCCCcEEEEEEEecCceEEeccCC
Confidence 568899999999999774 44555555555444 468999999999999999988764
No 19
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Probab=98.38 E-value=7.9e-07 Score=65.06 Aligned_cols=54 Identities=20% Similarity=0.272 Sum_probs=47.9
Q ss_pred ccccEEEEEcCCCCCCCchHHHHHHHHHHHHhhCC---CCCEEEEEEeCCceeeeeecC
Q psy9195 73 CSKDVVILVDNSGSMAGMRNTTAKLVLHSLLQTFS---NNDFINIFKFNLTVDTIVPCL 128 (139)
Q Consensus 73 ~~~~vvi~iD~sgSm~g~~l~~ak~~~~~~l~~l~---~~d~~~v~~f~~~~~~~~~~~ 128 (139)
.+.+++|++|.||||. .++.+|..+..+++.|. ++++++|+.|++++...+|+.
T Consensus 21 ~~~div~vlD~SgSM~--~~~~~k~~~~~~~~~l~~~~~~~rv~lv~F~~~~~~~~~l~ 77 (223)
T 2b2x_A 21 TQLDIVIVLDGSNSIY--PWESVIAFLNDLLKRMDIGPKQTQVGIVQYGENVTHEFNLN 77 (223)
T ss_dssp -CEEEEEEEECSTTCC--CHHHHHHHHHHHHTTSCCSTTSCCEEEEEESSSEEEEECTT
T ss_pred CcceEEEEEECCCChh--hHHHHHHHHHHHHHhcccCCCCeEEEEEEeCCCccEEEecC
Confidence 4678999999999998 38899999999999885 799999999999999988873
No 20
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=98.37 E-value=4.7e-07 Score=68.09 Aligned_cols=57 Identities=16% Similarity=0.210 Sum_probs=47.6
Q ss_pred ccccEEEEEcCCCCCCCchHHHHHHHHHHHHhhCC---CCCEEEEEEeCCce---eee-eecCCC
Q psy9195 73 CSKDVVILVDNSGSMAGMRNTTAKLVLHSLLQTFS---NNDFINIFKFNLTV---DTI-VPCLGN 130 (139)
Q Consensus 73 ~~~~vvi~iD~sgSm~g~~l~~ak~~~~~~l~~l~---~~d~~~v~~f~~~~---~~~-~~~~~~ 130 (139)
.+.+++|+||+||||. .++..+|.++..++.++. .+++|+|++|+++. ..+ .|.+..
T Consensus 133 ~~~~vvfLVDtSgSM~-~kl~~vk~al~~Ll~sl~~~~~~~~VavV~F~~~~~~~~~ll~pfT~~ 196 (242)
T 3rag_A 133 VALHLVVCLDTSASMR-DKIPTVREAVRDLALSLKVRSGPLAVSVIAFPGKGEEATRLVQPFSSE 196 (242)
T ss_dssp SCEEEEEEEECSGGGT-TTHHHHHHHHHHHHHHHTTSSSCEEEEEEEESCSTTCSCEEEEEEESS
T ss_pred CCCCEEEEEECcccHH-HHHHHHHHHHHHHHHHHhccCCCcEEEEEEECCCCccceeecCCCCCh
Confidence 5788999999999997 589999999999998865 57999999999974 333 366654
No 21
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*
Probab=98.23 E-value=1.4e-06 Score=73.79 Aligned_cols=56 Identities=20% Similarity=0.234 Sum_probs=50.4
Q ss_pred cccEEEEEcCCCCCCCchHHHHHHHHHHHHhhCC---CCCEEEEEEeCCceeeeeecCC
Q psy9195 74 SKDVVILVDNSGSMAGMRNTTAKLVLHSLLQTFS---NNDFINIFKFNLTVDTIVPCLG 129 (139)
Q Consensus 74 ~~~vvi~iD~sgSm~g~~l~~ak~~~~~~l~~l~---~~d~~~v~~f~~~~~~~~~~~~ 129 (139)
+-+++|+||.||||.+..++.+|.++..+++.|. .+++|+|+.|++++..++|...
T Consensus 243 ~~div~vlD~SgSM~~~~~~~~k~~~~~~i~~l~~~~~~~rv~lv~f~~~~~~~~~l~~ 301 (741)
T 3hrz_D 243 SMNIYLVLDGSGSIGASDFTGAKKCLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVSE 301 (741)
T ss_dssp EEEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEEEEECTTS
T ss_pred ceeEEEEeccCCcccccchHHHHHHHHHHHHhhhccCCCceEEEEEeccCCceeEeecc
Confidence 4689999999999999999999999999988876 5789999999999999988764
No 22
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Probab=98.19 E-value=1.5e-06 Score=70.40 Aligned_cols=52 Identities=19% Similarity=0.236 Sum_probs=46.4
Q ss_pred ccEEEEEcCCCCCCCchHHHHHHHHHHHHhhC---CCCCEEEEEEeCCceeeeee
Q psy9195 75 KDVVILVDNSGSMAGMRNTTAKLVLHSLLQTF---SNNDFINIFKFNLTVDTIVP 126 (139)
Q Consensus 75 ~~vvi~iD~sgSm~g~~l~~ak~~~~~~l~~l---~~~d~~~v~~f~~~~~~~~~ 126 (139)
-+++|++|.|+||.+.+++.+|.++..+++.| ..+++++|+.|+++++...+
T Consensus 2 ~div~vlD~SgSM~~~~~~~~k~~~~~~~~~l~~~~~~~~v~lv~f~~~~~~~~~ 56 (497)
T 1rrk_A 2 MNIYLVLDGSDSIGASNFTGAKKVLVNLIEKVASYGVKPRYGLVTYATYPKIWVK 56 (497)
T ss_dssp EEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEEEEEC
T ss_pred eeEEEEEECCCCcchhhHHHHHHHHHHHHHHhhccCCCceEEEEEecCCceEeec
Confidence 47899999999999999999999999998864 45899999999999988773
No 23
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae}
Probab=98.07 E-value=3.1e-06 Score=73.99 Aligned_cols=50 Identities=30% Similarity=0.442 Sum_probs=43.6
Q ss_pred ccccEEEEEcCCCCCCCc------hHHHHHHHHHHHHhhCC--CCCEEEEEEeCCcee
Q psy9195 73 CSKDVVILVDNSGSMAGM------RNTTAKLVLHSLLQTFS--NNDFINIFKFNLTVD 122 (139)
Q Consensus 73 ~~~~vvi~iD~sgSm~g~------~l~~ak~~~~~~l~~l~--~~d~~~v~~f~~~~~ 122 (139)
.+.+++|++|.||||.+. |++.+|.+++.+++.|. ++|+|+|+.|++++.
T Consensus 223 ~~~DIVfVLD~SGSM~~~~~~~~~Rl~~~K~a~~~~ld~L~~~~~drVgLV~Fs~~a~ 280 (893)
T 2ww8_A 223 VPLDVVILLDNSNSMSNIRNKNARRAERAGEATRSLIDKITSDSENRVALVTYASTIF 280 (893)
T ss_dssp CCEEEEEEEECCGGGCTTHHHHCCHHHHHHHHHHHHHHHHHTSTTCEEEEEEESSSBC
T ss_pred CCccEEEEEeCCCCCCCcCccchhHHHHHHHHHHHHHHHhhcCCCcEEEEEEecCccc
Confidence 568899999999999886 47889999999998875 499999999998763
No 24
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=98.05 E-value=6.8e-06 Score=59.53 Aligned_cols=56 Identities=16% Similarity=0.227 Sum_probs=46.5
Q ss_pred ccEEEEEcCCCCCCC-----chHHHHHHHHHHHHhh---CCCCCEEEEEEeCCc-eeeeeecCCC
Q psy9195 75 KDVVILVDNSGSMAG-----MRNTTAKLVLHSLLQT---FSNNDFINIFKFNLT-VDTIVPCLGN 130 (139)
Q Consensus 75 ~~vvi~iD~sgSm~g-----~~l~~ak~~~~~~l~~---l~~~d~~~v~~f~~~-~~~~~~~~~~ 130 (139)
..+++++|.|+||.. +|++.+|.++..++.. ..++|+++|+.|.++ +..+.|++.+
T Consensus 3 e~lvlvlD~S~SM~~~D~~psRl~~ak~~~~~~~~~~~~~~~~d~vGLV~fa~~~a~~~~plT~d 67 (192)
T 2x5n_A 3 EATMILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQVLSTLTRD 67 (192)
T ss_dssp EEEEEEECCSGGGGCTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCCEEEEEESC
T ss_pred eEEEEEEECCHhhccCCCCCCHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCcEEecCCCCC
Confidence 357899999999973 4899999998887654 368899999999994 8888888765
No 25
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.00 E-value=1.4e-05 Score=61.00 Aligned_cols=55 Identities=11% Similarity=0.086 Sum_probs=44.9
Q ss_pred cEEEEEcCCCCCCC-----chHHHHHHHHHHHHhh---CCCCCEEEEEEeCCce-eeeeecCCC
Q psy9195 76 DVVILVDNSGSMAG-----MRNTTAKLVLHSLLQT---FSNNDFINIFKFNLTV-DTIVPCLGN 130 (139)
Q Consensus 76 ~vvi~iD~sgSm~g-----~~l~~ak~~~~~~l~~---l~~~d~~~v~~f~~~~-~~~~~~~~~ 130 (139)
.++|+||.|+||.. +|++.+|.+++.+++. +.+.|+|+|++|.++. ..+.|++.+
T Consensus 5 AtViviD~S~SM~~~D~~PsRl~a~k~Av~~li~~~~~~nPed~VGLVtfag~~~~vl~plT~D 68 (268)
T 4b4t_W 5 ATVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPRVLSTFTAE 68 (268)
T ss_dssp EEEEEECCSSTTSSTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCEEEEEEESC
T ss_pred eEEEEEECCHHHhCCCCCCcHHHHHHHHHHHHHHHHhhCCCcceEEEEEecCCcceeccCCcch
Confidence 47899999999974 4899999999998874 5689999999998764 456676654
No 26
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=97.99 E-value=1.3e-05 Score=71.46 Aligned_cols=55 Identities=20% Similarity=0.351 Sum_probs=50.9
Q ss_pred cccEEEEEcCCCCCCCchHHHHHHHHHHHHhhCCCC-CEEEEEEeCCceeeeeecC
Q psy9195 74 SKDVVILVDNSGSMAGMRNTTAKLVLHSLLQTFSNN-DFINIFKFNLTVDTIVPCL 128 (139)
Q Consensus 74 ~~~vvi~iD~sgSm~g~~l~~ak~~~~~~l~~l~~~-d~~~v~~f~~~~~~~~~~~ 128 (139)
+.+++|+||.||||.+.+++.+|.+++.+++.|.++ ++|+|+.|+++++..+|..
T Consensus 130 ~~DIvfvlD~SgSm~~~~f~~~k~fv~~lv~~~~~~~~rVglV~Fs~~~~~~~~lt 185 (1095)
T 3k6s_A 130 EQDIVFLIDGSGSISSRNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQTHFTFE 185 (1095)
T ss_dssp CEEEEEEEECCTTSCSHHHHHHHHHHHHHHHSSCSSSEEEEEEEESSSEEEEECSH
T ss_pred CccEEEEEcCCCCCChhHHHHHHHHHHHHHHhccccccEEEEEEECCeEEEEecCc
Confidence 578999999999999999999999999999999866 8999999999999988774
No 27
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*
Probab=97.48 E-value=0.00016 Score=60.06 Aligned_cols=47 Identities=26% Similarity=0.224 Sum_probs=42.1
Q ss_pred ccEEEEEcCCCCCCC------chHHHHHHHHHHHHh---hCCCCCEEEEEEeCCce
Q psy9195 75 KDVVILVDNSGSMAG------MRNTTAKLVLHSLLQ---TFSNNDFINIFKFNLTV 121 (139)
Q Consensus 75 ~~vvi~iD~sgSm~g------~~l~~ak~~~~~~l~---~l~~~d~~~v~~f~~~~ 121 (139)
..++|+||+|+||.. ++|+.++.++..+++ ...++|++||+.|+++.
T Consensus 8 e~iv~~iDvS~SM~~~d~~~~srl~~ak~~i~~~i~~ki~~~~~D~vGlv~f~~~~ 63 (565)
T 1jey_B 8 AAVVLCMDVGFTMSNSIPGIESPFEQAKKVITMFVQRQVFAENKDEIALVLFGTDG 63 (565)
T ss_dssp EEEEEEEECCGGGGCCBTTBCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSS
T ss_pred eEEEEEEECChHhcccCCCCCCcHHHHHHHHHHHHHHHhcCCCCCEEEEEEEccCC
Confidence 568899999999963 489999999999998 47899999999999876
No 28
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A
Probab=96.70 E-value=0.00064 Score=56.13 Aligned_cols=55 Identities=13% Similarity=0.076 Sum_probs=36.8
Q ss_pred ccccEEEEEcCCCCCCC----chHHHHHHHHHHHHhhCCCCCEEEEEEeCCceeeeeecC
Q psy9195 73 CSKDVVILVDNSGSMAG----MRNTTAKLVLHSLLQTFSNNDFINIFKFNLTVDTIVPCL 128 (139)
Q Consensus 73 ~~~~vvi~iD~sgSm~g----~~l~~ak~~~~~~l~~l~~~d~~~v~~f~~~~~~~~~~~ 128 (139)
.+.++++++|.||||.+ .+++....++...+..+..+|+++|+.|++... ..|..
T Consensus 367 ~~~~v~lvvD~SgSM~~~~~~~~l~~~~~Aa~l~~~~~~~~d~vglv~Fs~~~~-~~~~t 425 (538)
T 1yvr_A 367 TGKRFLLAIDVSASMNQRVLGSILNASVVAAAMCMLVARTEKDSHMVAFSDEML-PCPIT 425 (538)
T ss_dssp CCCCEEEEEECSGGGGSBSTTSSCBHHHHHHHHHHHHHHHCSSEEEEEESSSEE-CCSCC
T ss_pred CCceEEEEEECccccCCCCCCCcHHHHHHHHHHHHHHhccCCceEEEEECCCce-EcCCC
Confidence 45789999999999975 234443332333334556899999999998543 33444
No 29
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B
Probab=96.63 E-value=0.0029 Score=53.11 Aligned_cols=48 Identities=19% Similarity=0.279 Sum_probs=41.5
Q ss_pred ccEEEEEcCCCCCCC-------chHHHHHHHHHHHHhh---CCCCCEEEEEEeCCcee
Q psy9195 75 KDVVILVDNSGSMAG-------MRNTTAKLVLHSLLQT---FSNNDFINIFKFNLTVD 122 (139)
Q Consensus 75 ~~vvi~iD~sgSm~g-------~~l~~ak~~~~~~l~~---l~~~d~~~v~~f~~~~~ 122 (139)
..++|+||+|+||.. ++|+.++.++..+++. -.++|++||+.|++...
T Consensus 36 e~ivf~IDvS~SM~~~d~~~~~srl~~a~~~v~~~i~~kii~~~~D~vGlVlfgt~~t 93 (609)
T 1jey_A 36 DSLIFLVDASKAMFESQSEDELTPFDMSIQCIQSVYISKIISSDRDLLAVVFYGTEKD 93 (609)
T ss_dssp EEEEEEEECSGGGGCCCSSSSCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSC
T ss_pred eEEEEEEECCHHHcCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCeEEEEEEccCCC
Confidence 458999999999963 3799999999999886 47899999999999874
No 30
>4dah_A Sporulation kinase D; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology, PAS-like fold; 2.03A {Bacillus subtilis} PDB: 4dbj_A 4dbi_A 4dak_A 3fos_A
Probab=96.48 E-value=0.0055 Score=43.67 Aligned_cols=53 Identities=17% Similarity=0.356 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhhcCcceeEeeeecccccEEECCCCCCCCccccccccccchhhhhhcc
Q psy9195 15 EGLDEVFRENYMADPTLLWQYFGSAKGFLRTYPDKEDAPAEDLIFDCRNRQWYIQATT 72 (139)
Q Consensus 15 ~~l~~~f~~~~~~~~~i~~~y~gs~~G~~~~~p~~~~~~~~~~~yDpr~r~Wy~~a~~ 72 (139)
+.+.+.|....+.+|.+..+|+.+.+|.++..... . ...+|++.|+||++++.
T Consensus 54 ~~~~~~L~~~~~~~~~~~~i~i~d~~G~~~~~~~~-~----~~~~~~~~r~~f~~a~~ 106 (217)
T 4dah_A 54 KKMQSILEKTFDSEPRFSGLYFLNAKGDVTASTTE-L----KTKVNLADRSFFIKAKE 106 (217)
T ss_dssp HHHHHHHHHHHTTCTTEEEEEEEETTCBEEEESSC-C----SSCCBCTTSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccEEEEECCCCcEEEecCC-C----CCCCCcchhHHHHHHHh
Confidence 45777888888889999999999999998876431 1 36789999999998775
No 31
>3e4o_A C4-dicarboxylate transport sensor protein DCTB; PAS domain, N-TERM helical dimerization domain, transferase; 2.30A {Sinorhizobium meliloti} PDB: 3e4p_A 3e4q_A 2zbb_A
Probab=96.21 E-value=0.0089 Score=45.88 Aligned_cols=79 Identities=10% Similarity=0.082 Sum_probs=51.4
Q ss_pred CCCHHHHHhhhc-----hHHHHHHHHHHhhcCcceeEeeeecccccEEECCCCCCCCccccccccccchhhhhhcccccc
Q psy9195 2 AEHDDVRAGLMW-----SEGLDEVFRENYMADPTLLWQYFGSAKGFLRTYPDKEDAPAEDLIFDCRNRQWYIQATTCSKD 76 (139)
Q Consensus 2 ~~~~~v~~~~~~-----~~~l~~~f~~~~~~~~~i~~~y~gs~~G~~~~~p~~~~~~~~~~~yDpr~r~Wy~~a~~~~~~ 76 (139)
+.||+|++-+.. .+.+...++.+.+ ...+..+|+++.+|..+..+....+ ....+.|.+.|+||+++++....
T Consensus 80 A~~p~v~~~L~~~d~~~~~~l~~~L~~~~~-~~~~~~i~v~d~~G~viass~~~~p-~~~~g~d~~~R~yf~~Al~g~~~ 157 (305)
T 3e4o_A 80 ADDAAIRGALLSPDRPSLDRINRKLEALAT-SAEAAVIYLIDRSGVAVAASNWQEP-TSFVGNDYAFRDYFRLAVRDGMA 157 (305)
T ss_dssp HTCHHHHHHHHSCCHHHHHHHHHHHHHHHH-HSSCSEEEEEETTSBEEEETTTTST-TCCTTCBCTTSHHHHHHHHHSEE
T ss_pred hCCHHHHHHHhCCCHHHHHHHHHHHHHHHh-ccCccEEEEECCCCCEEEeCCCcCc-ccccCCCccccHHHHHHHhcCCc
Confidence 467888776643 2456677777654 3577889999999998865432221 11235688999999998865443
Q ss_pred EEEEEc
Q psy9195 77 VVILVD 82 (139)
Q Consensus 77 vvi~iD 82 (139)
+.+.++
T Consensus 158 ~~~~~~ 163 (305)
T 3e4o_A 158 EHFAMG 163 (305)
T ss_dssp EEEEEC
T ss_pred EEEEEe
Confidence 334443
No 32
>3by9_A Sensor protein; histidine kinase sensor domain, phosphoprotein, transferase, two-component regulatory system; 1.70A {Vibrio cholerae}
Probab=96.16 E-value=0.011 Score=42.80 Aligned_cols=80 Identities=6% Similarity=-0.042 Sum_probs=49.9
Q ss_pred CCCHHHHHhhhc------hHHHHHHHHHHhhcCcceeEeeeecccccEEECCCCCCCCccccccccccchhhhhhccccc
Q psy9195 2 AEHDDVRAGLMW------SEGLDEVFRENYMADPTLLWQYFGSAKGFLRTYPDKEDAPAEDLIFDCRNRQWYIQATTCSK 75 (139)
Q Consensus 2 ~~~~~v~~~~~~------~~~l~~~f~~~~~~~~~i~~~y~gs~~G~~~~~p~~~~~~~~~~~yDpr~r~Wy~~a~~~~~ 75 (139)
+.+|.+++.+.- .+.+...++.+.+ ...+..+|+++.+|..+..+....+ ....++|++.|+||++++..+.
T Consensus 38 a~~~~v~~~l~~~~~~~~~~~l~~~l~~~~~-~~~~~~i~i~d~~G~~~~~~~~~~~-~~~~~~~~~~r~~~~~a~~~~~ 115 (260)
T 3by9_A 38 SKDKELVDALLSAQNSAQIDITNRYLEQVNE-VIQAADTYLIDRFGNTIASSNWNLD-RSFIGRNFAWRPYFYLSIAGQK 115 (260)
T ss_dssp HTCHHHHHHHHTTTCHHHHHHHHHHHHHHHH-HHTCSEEEEEETTSBEEEETTTTST-TCCTTCBCTTSHHHHHHTTTSC
T ss_pred hCCHHHHHHHcCCCCHHHHHHHHHHHHHHHh-hcCcceEEEECCCCCEEEecCCCCC-CCccCCccccCHHHHHHHhCCC
Confidence 456666665432 2245666666554 3466779999999988765432211 1124789999999999887554
Q ss_pred cEEEEEcC
Q psy9195 76 DVVILVDN 83 (139)
Q Consensus 76 ~vvi~iD~ 83 (139)
.++.++|.
T Consensus 116 ~~~~~~~~ 123 (260)
T 3by9_A 116 SQYFALGS 123 (260)
T ss_dssp EEEEEECT
T ss_pred ceEEEEec
Confidence 44445554
No 33
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans}
Probab=96.12 E-value=0.0034 Score=51.89 Aligned_cols=51 Identities=16% Similarity=0.059 Sum_probs=32.9
Q ss_pred ccccEEEEEcCCCCCCC-c-----hHHHHHHHHHHHHhhCCCCCEEEEEEeCCceee
Q psy9195 73 CSKDVVILVDNSGSMAG-M-----RNTTAKLVLHSLLQTFSNNDFINIFKFNLTVDT 123 (139)
Q Consensus 73 ~~~~vvi~iD~sgSm~g-~-----~l~~ak~~~~~~l~~l~~~d~~~v~~f~~~~~~ 123 (139)
.+..+++++|+||||.+ . ++..+..++...+-.+..+|+++|+.|++....
T Consensus 361 ~~~~~lv~vDvSgSM~~~~~~~~~k~~~~e~Aa~la~~~~r~~d~v~lv~Fs~~~~~ 417 (535)
T 2nvo_A 361 ANTRHLLALDVSGSMTCGDVAGVPGLTPNMAAAAMSLIALRTEPDALTMGFAEQFRP 417 (535)
T ss_dssp CCSEEEEEECCSGGGGSCCGGGCTTCCHHHHHHHHHHHHHHHSSEEEEEEEBSSEEE
T ss_pred CCceEEEEEECCccccCCCCCCCCcccHHHHHHHHHHHHcCcCCceEEEEECCcceE
Confidence 45678889999999976 2 222222222222234567999999999996543
No 34
>3lif_A Putative diguanylate cyclase (ggdef) with PAS/PAC; PDC fold, signaling protein; HET: CIT; 2.70A {Rhodopseudomonas palustris}
Probab=95.43 E-value=0.015 Score=42.16 Aligned_cols=52 Identities=19% Similarity=0.127 Sum_probs=41.6
Q ss_pred HHHHHHHHHhhcCcceeEeeeecccccEEECCCCCCCCccccccccccchhhhhhcc
Q psy9195 16 GLDEVFRENYMADPTLLWQYFGSAKGFLRTYPDKEDAPAEDLIFDCRNRQWYIQATT 72 (139)
Q Consensus 16 ~l~~~f~~~~~~~~~i~~~y~gs~~G~~~~~p~~~~~~~~~~~yDpr~r~Wy~~a~~ 72 (139)
.+.+.|....+.+|.+..+++.+.+|. +..+.... ...+|++.|+||+.++.
T Consensus 55 ~~~~~L~~~~~~~~~~~~i~i~d~~G~-~~~s~~~~----~~~~~~~~r~~f~~a~~ 106 (254)
T 3lif_A 55 VFNERLRALADNLPQLSDVAILDADGQ-LTYASVKP----VPALDNSDRSYFRYHRA 106 (254)
T ss_dssp HHHHHHHHHHHHCTTEEEEEEECTTSB-EEEESSSS----EECCBCTTSHHHHHHHH
T ss_pred HHHHHHHHHHhcCCccceEEEECCCCC-EecCCCCC----CCCCCcccHHHHHHHHh
Confidence 467788888888999999999999999 55443222 36889999999998775
No 35
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Probab=95.42 E-value=0.028 Score=48.40 Aligned_cols=49 Identities=12% Similarity=0.123 Sum_probs=42.4
Q ss_pred cccEEEEEcCCCCCCCchHHHHHHHHHHHHhhCCCCCEEEEEEeCCceeee
Q psy9195 74 SKDVVILVDNSGSMAGMRNTTAKLVLHSLLQTFSNNDFINIFKFNLTVDTI 124 (139)
Q Consensus 74 ~~~vvi~iD~sgSm~g~~l~~ak~~~~~~l~~l~~~d~~~v~~f~~~~~~~ 124 (139)
|--++++||+|.+ ...++.++++++..|+.|.++-+||+|+|++.++..
T Consensus 132 pp~~vFvIDvS~~--a~~l~~l~~si~~~L~~Lp~~~~VGlITf~~~v~~y 180 (769)
T 2nut_A 132 PLIFLYVVDTCME--DEDLQALKESMQMSLSLLPPTALVGLITFGRMVQVH 180 (769)
T ss_dssp CCEEEEEEECCSC--HHHHHHHHHHHHHHHTTSCTTCEEEEEEESSEEEEE
T ss_pred CCEEEEEEECCcc--HHHHHHHHHHHHHHHHhCCCCceEEEEEeCCEEEEE
Confidence 3457799999997 346889999999999999999999999999988763
No 36
>3lid_A Putative sensory BOX/ggdef family protein; PDC fold, signaling protein; 1.76A {Vibrio parahaemolyticus} PDB: 3lie_A 2p7j_A*
Probab=95.12 E-value=0.015 Score=44.07 Aligned_cols=73 Identities=14% Similarity=0.056 Sum_probs=49.4
Q ss_pred CCCHHHHHhhhc-----hHHHHHHHHHHhhcCcceeEeeeecccccEEE---CCCCC-CCCccccccccccchhhhhhcc
Q psy9195 2 AEHDDVRAGLMW-----SEGLDEVFRENYMADPTLLWQYFGSAKGFLRT---YPDKE-DAPAEDLIFDCRNRQWYIQATT 72 (139)
Q Consensus 2 ~~~~~v~~~~~~-----~~~l~~~f~~~~~~~~~i~~~y~gs~~G~~~~---~p~~~-~~~~~~~~yDpr~r~Wy~~a~~ 72 (139)
+.+|.+.+-+.- .+.+.+.|..+.+.++.+..+|+.+.+|.... +.... ...+.....|.+.|+||+++++
T Consensus 45 A~~~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~i~lid~~G~~i~~~~~~~~~~~~~p~~~l~n~~~R~yf~~a~~ 124 (295)
T 3lid_A 45 GHSQSLYDYLREPSKANLTILENMWSSVARNQKLYKQIRFLDTSGTEKVRIKYDFKTSIAGPSLILRDKSAREYFKYAQS 124 (295)
T ss_dssp HTCHHHHHHHHSCCHHHHHHHHHHHHHHHHHHCCEEEEEEEETTSBEEEEEEEETTTTEEEECSCCCBCTTSHHHHHHHH
T ss_pred HCCHHHHHHHHCCCHHHHHHHHHHHHHHHhcCccccEEEEECCCCCEEEEEEccCCceeEcCccccccchhhHHHHHHhc
Confidence 456777665432 24577889999999999999999999997542 22111 1011124579999999999875
Q ss_pred cc
Q psy9195 73 CS 74 (139)
Q Consensus 73 ~~ 74 (139)
.+
T Consensus 125 ~~ 126 (295)
T 3lid_A 125 LD 126 (295)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 37
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Probab=94.70 E-value=0.064 Score=46.20 Aligned_cols=49 Identities=14% Similarity=0.152 Sum_probs=42.1
Q ss_pred cccEEEEEcCCCCCCCchHHHHHHHHHHHHhhCCCCCEEEEEEeCCceeee
Q psy9195 74 SKDVVILVDNSGSMAGMRNTTAKLVLHSLLQTFSNNDFINIFKFNLTVDTI 124 (139)
Q Consensus 74 ~~~vvi~iD~sgSm~g~~l~~ak~~~~~~l~~l~~~d~~~v~~f~~~~~~~ 124 (139)
|--++++||+|.+. ..++.+++++...|+.|.++-+||+|+||..++..
T Consensus 121 pp~~vFvIDvs~~~--~~l~~l~~sl~~~L~~Lp~~~~VGlITf~~~V~~y 169 (768)
T 1m2o_A 121 PPIFFFVVDLTSET--ENLDSLKESIITSLSLLPPNALIGLITYGNVVQLH 169 (768)
T ss_dssp CCEEEEEEECCSCH--HHHHHHHHHHHHHHHTSCTTCEEEEEEESSEEEEC
T ss_pred CCEEEEEEECCcCH--HHHHHHHHHHHHHHHhCCCCCEEEEEEECCEEEEE
Confidence 34567999999875 45889999999999999999999999999988754
No 38
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus}
Probab=94.62 E-value=0.053 Score=39.72 Aligned_cols=47 Identities=23% Similarity=0.189 Sum_probs=34.8
Q ss_pred ccccEEEEEcCCCCCCCchHHHHHHHHHHHHh---hCCCCCEEEEEEeCCc
Q psy9195 73 CSKDVVILVDNSGSMAGMRNTTAKLVLHSLLQ---TFSNNDFINIFKFNLT 120 (139)
Q Consensus 73 ~~~~vvi~iD~sgSm~g~~l~~ak~~~~~~l~---~l~~~d~~~v~~f~~~ 120 (139)
.|-++++++|.|+||... ++.+|..+..+.+ .+..+=++++..|-++
T Consensus 2 ~pvDl~fl~D~S~SM~~d-i~~lk~~~~~l~~~l~~~~~~~r~Gfg~f~Dk 51 (212)
T 2iue_A 2 NSVDLYFLMGLSGSAQGH-LSNVQTLGSDLLKALNEISRSGRIGFGSIVNM 51 (212)
T ss_dssp CCEEEEEEEECCGGGTTT-HHHHHHHHHHHHHHHHHHCSCEEEEEEEESSS
T ss_pred CceEEEEEEeCCCcchhH-HHHHHHHHHHHHHHHHhhCcCceEEEEEEEcC
Confidence 367899999999999775 4555555555543 4567889999999776
No 39
>3c8c_A Methyl-accepting chemotaxis protein; structural genomics, unknown function, uncharacterized protein; 1.50A {Vibrio cholerae o1 biovar eltor str}
Probab=94.34 E-value=0.023 Score=40.19 Aligned_cols=52 Identities=23% Similarity=0.402 Sum_probs=36.6
Q ss_pred HHHHHHHHHhhcCcceeEeeee-cccccEEEC-CCCCCCCccccccccccchhhhhhcc
Q psy9195 16 GLDEVFRENYMADPTLLWQYFG-SAKGFLRTY-PDKEDAPAEDLIFDCRNRQWYIQATT 72 (139)
Q Consensus 16 ~l~~~f~~~~~~~~~i~~~y~g-s~~G~~~~~-p~~~~~~~~~~~yDpr~r~Wy~~a~~ 72 (139)
.+.+.|+...+.+ .+..+|++ +.+|.++.. |.... ...+|++.|+||+.++.
T Consensus 47 ~~~~~l~~~~~~~-~~~~i~i~~~~~G~~~~~~~~~~~----~~~~~~~~~~w~~~~~~ 100 (240)
T 3c8c_A 47 NVRTIISQPLIKN-TFLLVGFGLEKDGSNINNDPSWNP----GPTWDPRVRPWYKDAKN 100 (240)
T ss_dssp HHHHHHSSHHHHH-HSSCEEEEETTTCCEEESCTTCCC----CSSCCGGGSHHHHHHHH
T ss_pred HHHHHHHHHHhCC-CeeEEEEEEcCCceEEecCCCCCC----CCCCCcccChHHHHHHh
Confidence 3455565555555 77889999 899988765 33222 36789999999997763
No 40
>3lic_A Sensor protein; PDC fold, ATP-binding, kinase, nucleotide-binding, phosphopr transferase, transmembrane; 2.30A {Shewanella oneidensis}
Probab=93.76 E-value=0.059 Score=39.24 Aligned_cols=61 Identities=13% Similarity=0.113 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhhcCcceeEeeeecccccE--------E-ECCCCCCCCc--cccccccc--cchhhhhhccccc
Q psy9195 15 EGLDEVFRENYMADPTLLWQYFGSAKGFL--------R-TYPDKEDAPA--EDLIFDCR--NRQWYIQATTCSK 75 (139)
Q Consensus 15 ~~l~~~f~~~~~~~~~i~~~y~gs~~G~~--------~-~~p~~~~~~~--~~~~yDpr--~r~Wy~~a~~~~~ 75 (139)
..+.+.+++..+.++.+..+|++.+.|.+ + .-.+..+... ....||++ .|+||+.++..++
T Consensus 56 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~w~~~a~~~~~ 129 (274)
T 3lic_A 56 EKLKTVLTNRIQRNPDFFGSAIAFKPNTFPNKKLFSPYVYRSGSGFNYLDIGADGYDYTDGNWDWWSKAINQVG 129 (274)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEEEECTTSSTTCSCBCEEEEECSSSEEEEEHHHHTCCTTSSSCHHHHTTTTTSS
T ss_pred HHHHHHHHHHHhcCcceeEEEEEecCccCCCccccceeEEECCCceEEEeccccCCCCCCCCCcHHHHHHhcCC
Confidence 45777888888889999999998877663 1 1111111110 12478999 9999998876443
No 41
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=93.68 E-value=0.063 Score=46.53 Aligned_cols=51 Identities=20% Similarity=0.134 Sum_probs=41.2
Q ss_pred cccEEEEEcCCCCCCCc-hHHHHHHHHHHHHhhCCC---CCEEEEEEeCCceeee
Q psy9195 74 SKDVVILVDNSGSMAGM-RNTTAKLVLHSLLQTFSN---NDFINIFKFNLTVDTI 124 (139)
Q Consensus 74 ~~~vvi~iD~sgSm~g~-~l~~ak~~~~~~l~~l~~---~d~~~v~~f~~~~~~~ 124 (139)
|-.++++||+|.++... .++.+++++...|+.|.+ +-+||+|+||..++..
T Consensus 187 pp~yvFvIDvs~~av~~g~l~~~~~si~~~L~~Lp~~~~~~~VGlITfd~~V~~~ 241 (810)
T 1pcx_A 187 PATYCFLIDVSQSSIKSGLLATTINTLLQNLDSIPNHDERTRISILCVDNAIHYF 241 (810)
T ss_dssp CCEEEEEEECSHHHHHHTHHHHHHHHHHHHTTTSCCTTSCCEEEEEEESSSEEEE
T ss_pred CcEEEEEEECChHHHhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEE
Confidence 34578999999876433 377889999999999986 5799999999998754
No 42
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=91.99 E-value=0.27 Score=42.41 Aligned_cols=51 Identities=12% Similarity=0.144 Sum_probs=40.4
Q ss_pred cccEEEEEcCCCC-CCCchHHHHHHHHHHHHhhCCCC-------CEEEEEEeCCceeee
Q psy9195 74 SKDVVILVDNSGS-MAGMRNTTAKLVLHSLLQTFSNN-------DFINIFKFNLTVDTI 124 (139)
Q Consensus 74 ~~~vvi~iD~sgS-m~g~~l~~ak~~~~~~l~~l~~~-------d~~~v~~f~~~~~~~ 124 (139)
|-.++|+||+|-. ....-++.++++++..|+.|.++ -+||+++||..++..
T Consensus 177 pp~y~FvIDvs~~av~sg~l~~~~~sl~~~L~~lP~~~~~~~~~~~VG~ITfd~~vh~y 235 (770)
T 3efo_B 177 PPAFIFMIDVSYSNIKNGLVKLICEELKTMLEKIPKEEQEETSAIRVGFITYNKVLHFF 235 (770)
T ss_dssp CCEEEEEEECSHHHHHTTHHHHHHHHHHHHGGGCCCCTTSSSCSCEEEEEEESSSEEEE
T ss_pred CcEEEEEEEcchhhccchHHHHHHHHHHHHHHhCCccccccCccceEEEEEeCCEEEEE
Confidence 3457789999865 33335889999999999999875 499999999988753
No 43
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=91.90 E-value=0.11 Score=45.76 Aligned_cols=51 Identities=20% Similarity=0.134 Sum_probs=40.5
Q ss_pred cccEEEEEcCCCCCCCc-hHHHHHHHHHHHHhhCCC---CCEEEEEEeCCceeee
Q psy9195 74 SKDVVILVDNSGSMAGM-RNTTAKLVLHSLLQTFSN---NDFINIFKFNLTVDTI 124 (139)
Q Consensus 74 ~~~vvi~iD~sgSm~g~-~l~~ak~~~~~~l~~l~~---~d~~~v~~f~~~~~~~ 124 (139)
|--++|+||+|.+.... -++.+++++...|+.|.+ +-+|++|+||..++..
T Consensus 303 ppvyvFvIDvS~~av~~g~l~~l~~sI~~~L~~LP~~~~~~~VGlITFds~Vh~y 357 (926)
T 1m2v_B 303 PATYCFLIDVSQSSIKSGLLATTINTLLQNLDSIPNHDERTRISILCVDNAIHYF 357 (926)
T ss_dssp CCBEEEEEECSHHHHHSCHHHHHHHHHHHTTTTSCCTTSCCEECEEEESSSEEEE
T ss_pred CcEEEEEEECCHHHHhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEE
Confidence 34578999999875322 377889999999988876 5799999999998754
No 44
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=91.40 E-value=0.34 Score=41.75 Aligned_cols=51 Identities=14% Similarity=0.078 Sum_probs=40.3
Q ss_pred cccEEEEEcCCCCC-CCchHHHHHHHHHHHHhhCCCC-------CEEEEEEeCCceeee
Q psy9195 74 SKDVVILVDNSGSM-AGMRNTTAKLVLHSLLQTFSNN-------DFINIFKFNLTVDTI 124 (139)
Q Consensus 74 ~~~vvi~iD~sgSm-~g~~l~~ak~~~~~~l~~l~~~-------d~~~v~~f~~~~~~~ 124 (139)
|-.++++||+|-.. ...-++.++++++..|+.|.++ -+||+++||..++..
T Consensus 173 pp~y~FvIDvs~~av~sg~l~~~~~si~~~L~~lp~~~~~~~~~~~VG~ITfd~~vh~y 231 (766)
T 3eh2_A 173 PPAFIFMIDVSYNAIRTGLVRLLCEELKSLLDFLPREGGAEESAIRVGFVTYNKVLHFY 231 (766)
T ss_dssp CCEEEEEEECSHHHHHTTHHHHHHHHHHHHGGGCCCCSSCSSCCCEEEEEEESSSEEEE
T ss_pred CCEEEEEEECchhhccchHHHHHHHHHHHHHHhCCcccccCCccceEEEEEeCCEEEEE
Confidence 44567899998642 2235788999999999999865 589999999998754
No 45
>3lib_A Hypothetical sensory transduction histidine kinas; PDC fold, signaling protein; 2.99A {Methanosarcina mazei}
Probab=90.80 E-value=0.22 Score=36.66 Aligned_cols=60 Identities=13% Similarity=0.218 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhhcCcceeEeeeecc-------------------cccEEECCCCCCC-Cccccccccccchhhhhhcccc
Q psy9195 15 EGLDEVFRENYMADPTLLWQYFGSA-------------------KGFLRTYPDKEDA-PAEDLIFDCRNRQWYIQATTCS 74 (139)
Q Consensus 15 ~~l~~~f~~~~~~~~~i~~~y~gs~-------------------~G~~~~~p~~~~~-~~~~~~yDpr~r~Wy~~a~~~~ 74 (139)
+.+.+.+++..+.+|.+..+|++.+ +|.+..|....-. ......+|++.|+||+.++..+
T Consensus 55 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~g~~~~~~~~d~~~r~w~~~a~~~~ 134 (290)
T 3lib_A 55 DEALLILENLLRDNPHLLGTYVAFEPDAFDGKDAEYTNSPAHDGTGRFVPYWNKMNGTASVAPLLHYDSSDYYQLPKATE 134 (290)
T ss_dssp HHHHHHHHHHHHTCTTCSEEEEEESTTTTTSCHHHHTTSTTCCTTCCCCEEEECTTSSCEEEECSCTTTSHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCCeEEEEEEEcCCCCCCCchhhcCCCCCCCCceEEEEEEecCCeEEEeecCCCCcchHHHHHHHcC
Confidence 4577788888888999988998854 3333222111000 0012468899999999887643
No 46
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*
Probab=90.38 E-value=0.15 Score=41.60 Aligned_cols=51 Identities=20% Similarity=0.068 Sum_probs=36.2
Q ss_pred hhccccccEEEEEcCCCCCCCchHHHHHHHHHH---HHhhCCCCCEEEEEEeCCc
Q psy9195 69 QATTCSKDVVILVDNSGSMAGMRNTTAKLVLHS---LLQTFSNNDFINIFKFNLT 120 (139)
Q Consensus 69 ~a~~~~~~vvi~iD~sgSm~g~~l~~ak~~~~~---~l~~l~~~d~~~v~~f~~~ 120 (139)
++...|-++++++|.|+||... ++.+|..... -+..+..+=++++..|=++
T Consensus 106 ~~~~ypvDLy~LmDlS~SM~dd-l~~lk~lg~~L~~~l~~~t~~~riGfgsFvDk 159 (472)
T 3t3p_B 106 QVEDYPVDIYYLMDLSYSMKDD-LWSIQNLGTKLATQMRKLTSNLRIGFGAFVDK 159 (472)
T ss_dssp CCSSCCEEEEEEEECSGGGHHH-HHHTTTHHHHHHHHHTTTCSCEEEEEEEECCC
T ss_pred cCCCCCceEEEEEccCcchHHH-HHHHHHHHHHHHHHHHhcCcCcEEEEEEeecc
Confidence 4556788999999999999764 2222333333 3445778889999999876
No 47
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Probab=89.98 E-value=0.18 Score=41.42 Aligned_cols=51 Identities=25% Similarity=0.172 Sum_probs=36.7
Q ss_pred hhccccccEEEEEcCCCCCCCchHHHHHHHHHHH---HhhCCCCCEEEEEEeCCc
Q psy9195 69 QATTCSKDVVILVDNSGSMAGMRNTTAKLVLHSL---LQTFSNNDFINIFKFNLT 120 (139)
Q Consensus 69 ~a~~~~~~vvi~iD~sgSm~g~~l~~ak~~~~~~---l~~l~~~d~~~v~~f~~~ 120 (139)
++...|-++++++|.|+||... ++.+|.....+ +..+..+=++++..|-++
T Consensus 127 ~~~~yPVDLyyLmDlS~SM~dd-l~~lk~lg~~L~~~l~~~t~~~RiGfGsFvDK 180 (503)
T 3v4v_B 127 RAEGYPVDLYYLMDLSYSMKDD-LERVRQLGHALLVRLQEVTHSVRIGFGSFVDK 180 (503)
T ss_dssp CCSSCCEEEEEEEECSGGGHHH-HHHHHHSSHHHHHHHTTTCSCEEEEEEEECCC
T ss_pred ccCCCceeEEEEEecCcchhhH-HHHHHHHHHHHHHHHHhhCcCcEEeeeeeccc
Confidence 4566788999999999999764 33333333333 455678889999999876
No 48
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=89.90 E-value=0.29 Score=42.07 Aligned_cols=51 Identities=16% Similarity=0.115 Sum_probs=39.8
Q ss_pred cccEEEEEcCCCCC-CCchHHHHHHHHHHHHhhCCCCC--EEEEEEeCCceeee
Q psy9195 74 SKDVVILVDNSGSM-AGMRNTTAKLVLHSLLQTFSNND--FINIFKFNLTVDTI 124 (139)
Q Consensus 74 ~~~vvi~iD~sgSm-~g~~l~~ak~~~~~~l~~l~~~d--~~~v~~f~~~~~~~ 124 (139)
|-.++|+||+|-.- ...-++.++++++..|+.|.++. +||+++||..++..
T Consensus 160 pp~yvFvIDvs~~a~~~g~l~~~~~sl~~~L~~lp~~~~~~VG~ITfd~~vh~y 213 (751)
T 3eh1_A 160 PAVYLFVLDVSHNAVEAGYLTILCQSLLENLDKLPGDSRTRIGFMTFDSTIHFY 213 (751)
T ss_dssp CCEEEEEEECSHHHHHHTHHHHHHHHHHHHTTTSSCCTTCEEEEEEESSSEEEE
T ss_pred CcEEEEEEEccHhhhhhhHHHHHHHHHHHHHHhcCCCcCcEEEEEEeCCEEEEE
Confidence 34567899998642 22347888999999999998766 99999999998753
No 49
>3vi3_B Integrin beta-1; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_B*
Probab=89.71 E-value=0.22 Score=40.39 Aligned_cols=51 Identities=20% Similarity=0.086 Sum_probs=36.7
Q ss_pred hhccccccEEEEEcCCCCCCCchHHHHHHHHHH---HHhhCCCCCEEEEEEeCCc
Q psy9195 69 QATTCSKDVVILVDNSGSMAGMRNTTAKLVLHS---LLQTFSNNDFINIFKFNLT 120 (139)
Q Consensus 69 ~a~~~~~~vvi~iD~sgSm~g~~l~~ak~~~~~---~l~~l~~~d~~~v~~f~~~ 120 (139)
++...|-++.+++|.|+||... ++.+|..... -+..+..+=++++..|-++
T Consensus 117 ~~~~yPVDLyyLmDlS~SM~dd-l~~lk~lg~~L~~~l~~~t~~~riGfGsFvDK 170 (454)
T 3vi3_B 117 RAEDYPIDLYYLMDLSYSMKDD-LENVKSLGTDLMNEMRRITSDFRIGFGSFVEK 170 (454)
T ss_dssp CCSCCCEEEEEEEECSGGGHHH-HHHHTTHHHHHHHHHTTTCSSEEEEEEEECCC
T ss_pred cCCCCceeEEEEecCCcchhhH-HHHHHHHHHHHHHHHHhcCCCeEEEEEEEecc
Confidence 4556788999999999999764 2233333333 3456778889999999876
No 50
>3li9_A Hypothetical sensory transduction histidine kinas; PDC fold, signaling protein; HET: BTB; 1.70A {Methanosarcina mazei} PDB: 3li8_A* 3lia_A*
Probab=89.52 E-value=0.32 Score=35.73 Aligned_cols=59 Identities=17% Similarity=0.281 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhhcCcceeEeeeeccc-------------------ccEEECCCCCC-CCccccccccccchhhhhhccc
Q psy9195 15 EGLDEVFRENYMADPTLLWQYFGSAK-------------------GFLRTYPDKED-APAEDLIFDCRNRQWYIQATTC 73 (139)
Q Consensus 15 ~~l~~~f~~~~~~~~~i~~~y~gs~~-------------------G~~~~~p~~~~-~~~~~~~yDpr~r~Wy~~a~~~ 73 (139)
+.+.+.+++..+.+|.+..+|++.+. |.+..|....- .......+|++.|+||++++..
T Consensus 56 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~g~~~~~~~~d~~~~~w~~~a~~~ 134 (291)
T 3li9_A 56 EEAMSIIKRILNENPQLIGVYLGYEPDAFDGRDKNYINAPGHDSTGRFVPYCNKINGPVIIEPLVHYDSSDYYQLPKTT 134 (291)
T ss_dssp HHHHHHHHHHHHTCTTCSEEEEEECTTTTTSCGGGCTTCTTCCTTCCCCEEEECTTSSCEEEECCCTTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCeEEEEEEEcCCCCCCCchhhcCCCCCCCCccEEEEEEecCCeEEEEecCCCccchHHHHHHHh
Confidence 35777888888889999999988543 32222110000 0001246788999999988764
No 51
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*
Probab=89.41 E-value=0.11 Score=44.21 Aligned_cols=52 Identities=21% Similarity=0.095 Sum_probs=35.9
Q ss_pred hhccccccEEEEEcCCCCCCCch--H-HHHHHHHHHHHhhCCCCCEEEEEEeCCce
Q psy9195 69 QATTCSKDVVILVDNSGSMAGMR--N-TTAKLVLHSLLQTFSNNDFINIFKFNLTV 121 (139)
Q Consensus 69 ~a~~~~~~vvi~iD~sgSm~g~~--l-~~ak~~~~~~l~~l~~~d~~~v~~f~~~~ 121 (139)
.+...|-++++++|.|+||.... + .++...+ .-|..+..+=+|++..|-++.
T Consensus 99 ~~~~ypvDly~LmD~S~SM~ddi~~lk~l~~~l~-~~l~~~t~~~r~GfgsFvDk~ 153 (687)
T 3k6s_B 99 RAKGYPIDLYYLMDLSYSMLDDLRNVKKLGGDLL-RALNEITESGRIGFGSFVDKT 153 (687)
T ss_dssp CCCCCCCEEEEEEECSSTTHHHHHTTTTCCTTHH-HHHHSSCCSCEEEEEEECCCS
T ss_pred ccCCCceeEEEEEcCCcchHHHHHHHHHHHHHHH-HHHHhhCcCcEEeeEEeeccc
Confidence 45567889999999999997541 2 1222222 223467889999999998853
No 52
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=89.19 E-value=0.11 Score=44.25 Aligned_cols=52 Identities=21% Similarity=0.091 Sum_probs=35.6
Q ss_pred hhccccccEEEEEcCCCCCCCchHHHHHHHHHHH---HhhCCCCCEEEEEEeCCce
Q psy9195 69 QATTCSKDVVILVDNSGSMAGMRNTTAKLVLHSL---LQTFSNNDFINIFKFNLTV 121 (139)
Q Consensus 69 ~a~~~~~~vvi~iD~sgSm~g~~l~~ak~~~~~~---l~~l~~~d~~~v~~f~~~~ 121 (139)
.+...|-++++++|.|+||... |+.+|..+..| |..+..+=+|++..|-++.
T Consensus 106 ~~~~~pvDly~LmD~S~SM~dd-i~~lk~l~~~l~~~l~~~t~~~r~Gfgsf~Dk~ 160 (690)
T 3fcs_B 106 QVEDYPVDIYYLMDLSYSMKDD-LWSIQNLGTKLATQMRKLTSNLRIGFGAFVDKP 160 (690)
T ss_dssp CCBTCCEEEEEEEECSGGGHHH-HHHTTTTTHHHHHHHHHHCSCEEEEEEEECCCS
T ss_pred ccCCCCccEEEEecCCcchHHH-HHHHHHHHHHHHHHHHhhCcCceEEeEEeeccc
Confidence 4556788999999999999764 22222222222 2345788899999998854
No 53
>2bas_A YKUI protein; EAL domain, structural genom protein structure initiative, midwest center for structural genomics, MCSG, signaling protein; 2.61A {Bacillus subtilis} SCOP: c.1.33.1 d.110.6.2 PDB: 2w27_A*
Probab=87.18 E-value=0.27 Score=39.18 Aligned_cols=67 Identities=12% Similarity=0.042 Sum_probs=41.6
Q ss_pred HHHHHHHHHhh-cCcceeEeeeecccccEEE----CCCCCCCCccc--cccccccchhhhhhcc---ccccEEE---EEc
Q psy9195 16 GLDEVFRENYM-ADPTLLWQYFGSAKGFLRT----YPDKEDAPAED--LIFDCRNRQWYIQATT---CSKDVVI---LVD 82 (139)
Q Consensus 16 ~l~~~f~~~~~-~~~~i~~~y~gs~~G~~~~----~p~~~~~~~~~--~~yDpr~r~Wy~~a~~---~~~~vvi---~iD 82 (139)
.+++.+..+.. .++.+...|+++.+|.... .+..++. ... .++|...|+||++++. .++++.+ |+|
T Consensus 317 ~~~~~l~~~~~~~~~~~~~~Yi~D~~G~qi~~ni~~~~~~~~-~~~~~~g~n~s~Rpyf~~a~~~~~~~~~~~iS~pY~s 395 (431)
T 2bas_A 317 SDDDFIKKLAEELTDCSFRIYMCDEEGDQLTGNVFKQDGEWI-YQPEYAEKNWSWRPYFLENIMRMRNLRKGFFSDLYSD 395 (431)
T ss_dssp CHHHHHHHHHHHTGGGCSEEEEEETTSBBCSCEEEEETTEEE-EEGGGTTCBCTTSTTHHHHHHHHHHHCCCEECCCEEC
T ss_pred cHHHHHHHHHhhcCCCEEEEEEECCCCccccCcccCCCcccc-ccccccCCCccccHHHHHHHhhcccCCceEECCcEEc
Confidence 34555555443 2455666799999998654 1111121 112 5789999999999987 5565543 666
Q ss_pred C
Q psy9195 83 N 83 (139)
Q Consensus 83 ~ 83 (139)
.
T Consensus 396 ~ 396 (431)
T 2bas_A 396 L 396 (431)
T ss_dssp T
T ss_pred c
Confidence 5
No 54
>1p0z_A Sensor kinase CITA; transferase; HET: FLC MO7; 1.60A {Klebsiella pneumoniae} SCOP: d.110.6.1 PDB: 2v9a_A 2j80_A*
Probab=59.36 E-value=17 Score=23.37 Aligned_cols=66 Identities=5% Similarity=-0.048 Sum_probs=42.4
Q ss_pred CCCHHHHHhhhch--HHHHHHHHHHhhcCcceeEeeeecccccEEECCCCCCCCccccccccccchhhhhhccc
Q psy9195 2 AEHDDVRAGLMWS--EGLDEVFRENYMADPTLLWQYFGSAKGFLRTYPDKEDAPAEDLIFDCRNRQWYIQATTC 73 (139)
Q Consensus 2 ~~~~~v~~~~~~~--~~l~~~f~~~~~~~~~i~~~y~gs~~G~~~~~p~~~~~~~~~~~yDpr~r~Wy~~a~~~ 73 (139)
+.+|+|++-+.-. ..+...+..+.+. .....+|+.+.+|..+..|.... -+-+-..++++..++..
T Consensus 20 A~~p~v~~~l~~~~~~~l~~~~~~~~~~-~~~~~i~v~d~~G~~~a~~~~~~-----iG~~~~~~~~~~~al~G 87 (131)
T 1p0z_A 20 SAMPELVEAVQKRDLARIKALIDPMRSF-SDATYITVGDASGQRLYHVNPDE-----IGKSMEGGDSDEALINA 87 (131)
T ss_dssp HTCHHHHHHHHTTCHHHHHHHHHHHHHH-SCCSEEEEEETTSBEEECSSGGG-----TTSBCCSSCCHHHHHHC
T ss_pred HCCHHHHHHHHcCCHHHHHHHHHHHHHh-cCCCEEEEEcCCCcEEEecChhh-----CCCcccCCCcHHHHhCC
Confidence 5789998887533 3566777765543 45568999999999887774221 12123346787777743
No 55
>3v2d_N 50S ribosomal protein L13; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_M 2hgj_M 2hgu_M 2j03_N 2jl6_N 2jl8_N 2v47_N 2v49_N 2wdi_N 2wdj_N 2wdl_N 2wdn_N 2wh2_N 2wh4_N 2wrj_N 2wrl_N 2wro_N 2wrr_N 2x9s_N 2x9u_N ...
Probab=36.50 E-value=76 Score=21.33 Aligned_cols=36 Identities=22% Similarity=0.326 Sum_probs=26.3
Q ss_pred EEEEEcCCCCCCCchHHHHHHHHHHHHh--------hCCCCCEEEEE
Q psy9195 77 VVILVDNSGSMAGMRNTTAKLVLHSLLQ--------TFSNNDFINIF 115 (139)
Q Consensus 77 vvi~iD~sgSm~g~~l~~ak~~~~~~l~--------~l~~~d~~~v~ 115 (139)
-+++||+.|-.-|. +|..++..++. ..+.||+|-|+
T Consensus 12 ~w~viDA~~~~LGR---LAs~iAk~L~GKhKp~ytP~~d~Gd~VVVi 55 (140)
T 3v2d_N 12 RWVLIDAEGKTLGR---LATKIATLLRGKHRPDWTPNVAMGDFVVVV 55 (140)
T ss_dssp CEEEEECSSSBTTH---HHHHHHHHHHTTTSTTCCTTSCCCCEEEEE
T ss_pred eEEEEeCCCCchHH---HHHHHHHHHcCCCCCccCCCccCCCEEEEE
Confidence 45799999877674 78888877653 24579998776
No 56
>4b6a_O 60S ribosomal protein L16-A; large ribosomal subunit, ribosome biogenesis, ribosome matur factor, ribosome; 8.10A {Saccharomyces cerevisiae} PDB: 3izc_K 3izs_K 3o58_P 3o5h_P 3u5e_O 3u5i_O 1s1i_M
Probab=33.82 E-value=39 Score=24.23 Aligned_cols=31 Identities=26% Similarity=0.428 Sum_probs=22.5
Q ss_pred EEEEcCCCCCCCchHHHHHHHHHHHHhhCCCCCEEEEE
Q psy9195 78 VILVDNSGSMAGMRNTTAKLVLHSLLQTFSNNDFINIF 115 (139)
Q Consensus 78 vi~iD~sgSm~g~~l~~ak~~~~~~l~~l~~~d~~~v~ 115 (139)
+++||+.|-.-|- +|-.++..++ .||++-|+
T Consensus 6 ~vVIDA~g~vLGR---LAS~VAk~L~----~Gd~VVVV 36 (199)
T 4b6a_O 6 VVVIDAKDHLLGR---LASTIAKQLL----NGQKIVVV 36 (199)
T ss_dssp EEEEECTTBBHHH---HHHHHHHHHH----TTCEEEEE
T ss_pred EEEEECCCCchHH---HHHHHHHHhc----CCCEEEEE
Confidence 5899999966563 6666666553 59998776
No 57
>3r8s_J 50S ribosomal protein L13; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_H 1p86_H 1vs8_J 1vs6_J 2aw4_J 2awb_J 2gya_H 2gyc_H 1vt2_J 2i2v_J 2i2t_J* 2qao_J* 2qba_J* 2qbc_J* 2qbe_J 2qbg_J 2qbi_J* 2qbk_J* 2qov_J 2qox_J ...
Probab=30.80 E-value=70 Score=21.58 Aligned_cols=36 Identities=22% Similarity=0.313 Sum_probs=25.8
Q ss_pred EEEEEcCCCCCCCchHHHHHHHHHHHHh--------hCCCCCEEEEE
Q psy9195 77 VVILVDNSGSMAGMRNTTAKLVLHSLLQ--------TFSNNDFINIF 115 (139)
Q Consensus 77 vvi~iD~sgSm~g~~l~~ak~~~~~~l~--------~l~~~d~~~v~ 115 (139)
-+++||+.|-.-| ++|..++..++. ..+.||+|-|+
T Consensus 14 ~W~viDA~g~~LG---RLAs~iAk~L~GKhKp~ytP~~d~Gd~VVVi 57 (142)
T 3r8s_J 14 DWYVVDATGKTLG---RLATELARRLRGKHKAEYTPHVDTGDYIIVL 57 (142)
T ss_dssp CEEEEECTTCBHH---HHHHHHHHHHHTTTSTTCCTTSCCCCEEEEE
T ss_pred cEEEEeCCCCchH---HHHHHHHHHHcCCCCCccCCCccCCCEEEEE
Confidence 4589998886545 488888887753 24579998776
No 58
>2ftc_H L13MT, MRP-L13, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=27.77 E-value=88 Score=21.23 Aligned_cols=36 Identities=19% Similarity=0.175 Sum_probs=25.8
Q ss_pred EEEEEcCCCCCCCchHHHHHHHHHHHHhh--------CCCCCEEEEE
Q psy9195 77 VVILVDNSGSMAGMRNTTAKLVLHSLLQT--------FSNNDFINIF 115 (139)
Q Consensus 77 vvi~iD~sgSm~g~~l~~ak~~~~~~l~~--------l~~~d~~~v~ 115 (139)
-+++||+.|-.-| ++|..++..++.. .+.||+|-|+
T Consensus 17 ~w~viDA~g~~LG---RLAs~iA~~L~GKhKp~ytP~~D~Gd~VVVi 60 (148)
T 2ftc_H 17 IWYLLDGKMQPPG---KLAAMASIRLQGLHKPVYHALSDCGDHVVIM 60 (148)
T ss_pred cEEEEeCCCCchH---HHHHHHHHHHhccCCCCcCccccCCCEEEEE
Confidence 4579999886655 4777787766522 4479998887
No 59
>1j3a_A 50S ribosomal protein L13P; rRNA binding, ribosomal assembly, ribosome; 1.60A {Pyrococcus horikoshii} SCOP: c.21.1.1
Probab=26.23 E-value=46 Score=22.42 Aligned_cols=30 Identities=23% Similarity=0.352 Sum_probs=20.4
Q ss_pred EEEcCCCCCCCchHHHHHHHHHHHHhhCCCCCEEEEE
Q psy9195 79 ILVDNSGSMAGMRNTTAKLVLHSLLQTFSNNDFINIF 115 (139)
Q Consensus 79 i~iD~sgSm~g~~l~~ak~~~~~~l~~l~~~d~~~v~ 115 (139)
++||+.|-.-| ++|..++..++ .||+|-|+
T Consensus 2 ~viDA~g~~LG---RLAs~vAk~L~----~Gd~VVVi 31 (142)
T 1j3a_A 2 RIINADGLILG---RLASRVAKMLL----EGEEVVIV 31 (142)
T ss_dssp EEEECTTBBHH---HHHHHHHHHHH----TTCCEEEE
T ss_pred EEEeCCCCchH---HHHHHHHHHHh----cCCEEEEE
Confidence 57888775444 46677776654 68887776
No 60
>3by8_A Sensor protein DCUS; histidine kinase sensor domain, inner membrane, membrane, phosphoprotein, transferase, transmembrane; 1.45A {Escherichia coli} SCOP: d.110.6.1 PDB: 1ojg_A
Probab=26.02 E-value=1.1e+02 Score=19.59 Aligned_cols=46 Identities=17% Similarity=0.309 Sum_probs=32.8
Q ss_pred CCCHHHHHhhhch---HHHHHHHHHHhhcCcceeEeeeecccccEEECCC
Q psy9195 2 AEHDDVRAGLMWS---EGLDEVFRENYMADPTLLWQYFGSAKGFLRTYPD 48 (139)
Q Consensus 2 ~~~~~v~~~~~~~---~~l~~~f~~~~~~~~~i~~~y~gs~~G~~~~~p~ 48 (139)
+.+|+|++.+.-. ..|...+..+.+. .....+|+.+.+|..+..|.
T Consensus 25 A~~p~v~~al~~~~~~~~l~~~~~~~~~~-~~~~~i~v~d~~G~~~~~~~ 73 (142)
T 3by8_A 25 ADSPEIRQGLQKKPQESGIQAIAEAVRKR-NDLLFIVVTDMQSLRYSHPE 73 (142)
T ss_dssp HTCHHHHHHTTSCGGGCSHHHHHHHHHHH-TTCSEEEEEETTCBBSCCSS
T ss_pred HCCHHHHHHHHcCCChHHHHHHHHHHHhh-cCCcEEEEECCCCcEEECCC
Confidence 5689999888533 3577777776654 34457999999998776664
No 61
>2zjr_G 50S ribosomal protein L13; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.21.1.1 PDB: 1nwx_H* 1nwy_H* 1sm1_H* 1xbp_H* 2zjp_G* 2zjq_G 1nkw_H 3cf5_G* 3dll_G* 3pio_G* 3pip_G* 1pnu_H 1pny_H 1vor_K 1vou_K 1vow_K 1voy_K 1vp0_K
Probab=22.02 E-value=1.1e+02 Score=21.39 Aligned_cols=36 Identities=25% Similarity=0.398 Sum_probs=26.2
Q ss_pred EEEEEcCCCCCCCchHHHHHHHHHHHHh--------hCCCCCEEEEE
Q psy9195 77 VVILVDNSGSMAGMRNTTAKLVLHSLLQ--------TFSNNDFINIF 115 (139)
Q Consensus 77 vvi~iD~sgSm~g~~l~~ak~~~~~~l~--------~l~~~d~~~v~ 115 (139)
-+++||+.|-.-| ++|..++..++. ..+.||+|-|+
T Consensus 40 ~W~vIDA~g~~LG---RLAs~IAk~L~GKhKP~ytP~~D~GD~VVVI 83 (174)
T 2zjr_G 40 NWVVVDASGVPLG---RLATLIASRIRGKHRPDFTPNMIQGDFVVVI 83 (174)
T ss_dssp CEEEEECTTSBHH---HHHHHHHHHHHCSSCSSCCSSSCCCCEEEEE
T ss_pred cEEEEeCCCCchH---HHHHHHHHHHhccCCCccCccccCCCEEEEE
Confidence 3579999886545 488888877753 24579998887
No 62
>1l4d_B Streptokinase; plasminogen, protein complex, hydrolase/hydrolase activator complex; 2.30A {Streptococcus dysgalactiae subsp} SCOP: d.15.5.1
Probab=21.57 E-value=1.7e+02 Score=18.95 Aligned_cols=41 Identities=22% Similarity=0.412 Sum_probs=27.6
Q ss_pred CCCCCC--chHHHHHHHHHHHH-hhCCCCCEEEEEEeCCceeee
Q psy9195 84 SGSMAG--MRNTTAKLVLHSLL-QTFSNNDFINIFKFNLTVDTI 124 (139)
Q Consensus 84 sgSm~g--~~l~~ak~~~~~~l-~~l~~~d~~~v~~f~~~~~~~ 124 (139)
+|.|.. ++-++.+.+=.+++ ...+.++++.|+.|..+++..
T Consensus 42 ~~~~~~kl~KadLLkAIq~q~~~~~hs~d~~~evvDFa~DA~lt 85 (122)
T 1l4d_B 42 SGAMPHKLEKADLLKAIQEQLIANVHSNDDYFEVIDFASDATIT 85 (122)
T ss_dssp ---EESEEEHHHHHHHHHHHHHHSCCSSSCCEEEEEECTTCEEE
T ss_pred cccccccccHHHHHHHHHHHHhhhhccccceeEEEeccccceee
Confidence 556654 36667776666665 345678899999999998755
No 63
>4a17_I RPL13A, 60S ribosomal protein L13A; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_I 4a1c_I 4a1e_I
Probab=21.49 E-value=62 Score=23.12 Aligned_cols=31 Identities=26% Similarity=0.484 Sum_probs=21.4
Q ss_pred EEEEcCCCCCCCchHHHHHHHHHHHHhhCCCCCEEEEE
Q psy9195 78 VILVDNSGSMAGMRNTTAKLVLHSLLQTFSNNDFINIF 115 (139)
Q Consensus 78 vi~iD~sgSm~g~~l~~ak~~~~~~l~~l~~~d~~~v~ 115 (139)
+++||..|-.-| ++|..++..++ .||+|-|+
T Consensus 5 w~VIDA~g~~LG---RLAs~VAk~L~----~GD~VVVI 35 (198)
T 4a17_I 5 LVVIDAKGHLLG---RLASYVAKELL----SGQRIVVV 35 (198)
T ss_dssp CEEEECTTBBHH---HHHHHHHHHHH----TTCCEEEE
T ss_pred EEEEeCCCCchH---HHHHHHHHHHh----CCCEEEEE
Confidence 468888875545 47777776654 68887776
No 64
>1vq8_J 50S ribosomal protein L13P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.21.1.1 PDB: 1giy_M 1jj2_I 1k73_K* 1k8a_K* 1k9m_K* 1kc8_K* 1kd1_K* 1kqs_I* 1m1k_K* 1m90_K* 1ml5_m* 1n8r_K* 1nji_K* 1q7y_K* 1q81_K* 1q82_K* 1q86_K* 1qvf_I 1qvg_I 1s72_J* ...
Probab=20.99 E-value=79 Score=21.38 Aligned_cols=31 Identities=19% Similarity=0.373 Sum_probs=22.0
Q ss_pred EEEEcCCCCCCCchHHHHHHHHHHHHhhCCCCCEEEEE
Q psy9195 78 VILVDNSGSMAGMRNTTAKLVLHSLLQTFSNNDFINIF 115 (139)
Q Consensus 78 vi~iD~sgSm~g~~l~~ak~~~~~~l~~l~~~d~~~v~ 115 (139)
.++||+.|-.-| ++|..++..++ .||++-|+
T Consensus 9 w~viDA~g~~LG---RLAs~vAk~L~----~Gd~VVVi 39 (145)
T 1vq8_J 9 DVIVDARDCIMG---RVASQVAEQAL----DGETVAVV 39 (145)
T ss_dssp SEEEECTTBBHH---HHHHHHHHHHH----TTCCEEEE
T ss_pred EEEEeCCCCchH---HHHHHHHHHHh----cCCEEEEE
Confidence 468898875544 47777777664 69998776
Done!