RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9195
(139 letters)
>d1shux_ c.62.1.1 (X:) Capillary morphogenesis protein 2 domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 181
Score = 40.3 bits (93), Expect = 2e-05
Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 2/68 (2%)
Query: 72 TCSK--DVVILVDNSGSMAGMRNTTAKLVLHSLLQTFSNNDFINIFKFNLTVDTIVPCLG 129
+C + D+ ++D SGS+A V + S ++ F+ I+P G
Sbjct: 1 SCRRAFDLYFVLDKSGSVANNWIEIYNFVQQLAERFVSPEMRLSFIVFSSQATIILPLTG 60
Query: 130 NYSLVQTL 137
+ +
Sbjct: 61 DRGKISKG 68
>d1q0pa_ c.62.1.1 (A:) Complement factor B domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 209
Score = 39.7 bits (91), Expect = 4e-05
Identities = 10/57 (17%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 74 SKDVVILVDNSGSMAGMRNTTAKLVLHSLLQTFS---NNDFINIFKFNLTVDTIVPC 127
S ++ +++D S S+ T AK L +L++ + + + V
Sbjct: 1 SMNIYLVLDGSDSIGASNFTGAKKSLVNLIEKVASYGVKPRYGLVTYATYPKIWVKV 57
>d1ijba_ c.62.1.1 (A:) von Willebrand factor A1 domain, vWA1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 202
Score = 35.7 bits (81), Expect = 7e-04
Identities = 8/65 (12%), Positives = 24/65 (36%), Gaps = 5/65 (7%)
Query: 68 IQATTCSK--DVVILVDNSGSMAGMRNTTAKLVLHSLLQTFS---NNDFINIFKFNLTVD 122
+ CS+ D+V L+D S ++ K + +++ + + +++
Sbjct: 5 LHDFYCSRLLDLVFLLDGSSRLSEAEFEVLKAFVVDMMERLRVSQKWVRVAVVEYHDGSH 64
Query: 123 TIVPC 127
+
Sbjct: 65 AYIGL 69
>d1n3ya_ c.62.1.1 (A:) Integrin alpha-x beta2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 189
Score = 35.0 bits (79), Expect = 0.001
Identities = 9/35 (25%), Positives = 17/35 (48%)
Query: 76 DVVILVDNSGSMAGMRNTTAKLVLHSLLQTFSNND 110
D+V L+D SGS++ T + +++ F
Sbjct: 4 DIVFLIDGSGSISSRNFATMMNFVRAVISQFQRPS 38
>d1atza_ c.62.1.1 (A:) von Willebrand factor A3 domain, vWA3 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 184
Score = 34.1 bits (77), Expect = 0.003
Identities = 9/55 (16%), Positives = 19/55 (34%), Gaps = 3/55 (5%)
Query: 76 DVVILVDNSGSMAGMRNTTAKLVLHSLLQTF---SNNDFINIFKFNLTVDTIVPC 127
DV++L+D S S K + + +++ ++ VP
Sbjct: 4 DVILLLDGSSSFPASYFDEMKSFAKAFISKANIGPRLTQVSVLQYGSITTIDVPW 58
>d1mf7a_ c.62.1.1 (A:) Integrin alpha M (CR3, CD11b/CD18, Mac-1
alpha subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 194
Score = 33.8 bits (76), Expect = 0.003
Identities = 9/63 (14%), Positives = 20/63 (31%)
Query: 76 DVVILVDNSGSMAGMRNTTAKLVLHSLLQTFSNNDFINIFKFNLTVDTIVPCLGNYSLVQ 135
D+ L+D SGS+ K + ++++ + + I +
Sbjct: 7 DIAFLIDGSGSIIPHDFRRMKEFVSTVMEQLKKSKTLFSLMQYSEEFRIHFTFKEFQNNP 66
Query: 136 TLR 138
R
Sbjct: 67 NPR 69
>d1mjna_ c.62.1.1 (A:) Integrin CD11a/CD18 (Leukocyte function
associated antigen-1, LFA-1) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 179
Score = 31.4 bits (70), Expect = 0.021
Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Query: 76 DVVILVDNSGSMAGMRNTTAKLVLHSLLQTFSNNDF-INIFKFNLTVDTIVP 126
D+V L D S S+ + +++ SN + +F+ + T
Sbjct: 4 DLVFLFDGSMSLQPDEFQKILDFMKDVMKKCSNTSYQFAAVQFSTSYKTEFD 55
>d1yvra2 c.62.1.5 (A:364-537) 60-kda SS-A/Ro ribonucleoprotein,
RoRNP {African clawed frog (Xenopus laevis) [TaxId:
8355]}
Length = 174
Score = 30.2 bits (67), Expect = 0.057
Identities = 8/55 (14%), Positives = 19/55 (34%), Gaps = 6/55 (10%)
Query: 68 IQATTCSKDVVILVDNSGSMA----GMRNTTAKLVLHSLLQTFSNNDFINIFKFN 118
++ T K ++ +D S SM G + + + ++ F+
Sbjct: 1 VEPT--GKRFLLAIDVSASMNQRVLGSILNASVVAAAMCMLVARTEKDSHMVAFS 53
>d1jeyb2 c.62.1.4 (B:6-241) Ku80 subunit N-terminal domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 236
Score = 29.2 bits (64), Expect = 0.13
Identities = 14/70 (20%), Positives = 23/70 (32%), Gaps = 9/70 (12%)
Query: 77 VVILVDNSGSMAGM------RNTTAKLVLHSLLQTF---SNNDFINIFKFNLTVDTIVPC 127
VV+ +D +M+ AK V+ +Q N D I + F
Sbjct: 5 VVLCMDVGFTMSNSIPGIESPFEQAKKVITMFVQRQVFAENKDEIALVLFGTDGTDNPLS 64
Query: 128 LGNYSLVQTL 137
G+ T+
Sbjct: 65 GGDQYQNITV 74
>d1jeya2 c.62.1.3 (A:34-253) Ku70 subunit N-terminal domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 220
Score = 29.2 bits (64), Expect = 0.14
Identities = 8/52 (15%), Positives = 19/52 (36%), Gaps = 10/52 (19%)
Query: 77 VVILVDNSGSMAGM-------RNTTAKLVLHSLLQTF---SNNDFINIFKFN 118
++ LVD S +M + + S+ + S+ D + + +
Sbjct: 5 LIFLVDASKAMFESQSEDELTPFDMSIQCIQSVYISKIISSDRDLLAVVFYG 56
>d1pt6a_ c.62.1.1 (A:) Integrin alpha1-beta1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 192
Score = 26.0 bits (56), Expect = 1.3
Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 76 DVVILVDNSGSMAGMRNTTAKLVLHSLLQTF 106
D+VI++D S S+ + L+ LL+
Sbjct: 3 DIVIVLDGSNSIYPWD--SVTAFLNDLLKRM 31
>d1v7pc_ c.62.1.1 (C:) Integrin alpha2-beta1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 193
Score = 26.0 bits (56), Expect = 1.5
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
Query: 76 DVVILVDNSGSMAGMRNTTAKLVLHSLLQTFS 107
DVV++ D S S+ K L +Q
Sbjct: 3 DVVVVCDESNSIYPWD--AVKNFLEKFVQGLD 32
>d1jhga_ a.4.12.1 (A:) Trp repressor, TrpR {Escherichia coli [TaxId:
562]}
Length = 101
Score = 24.7 bits (54), Expect = 2.2
Identities = 9/41 (21%), Positives = 16/41 (39%)
Query: 84 SGSMAGMRNTTAKLVLHSLLQTFSNNDFINIFKFNLTVDTI 124
S +MA R+ + L + N+ + + LT D
Sbjct: 1 SAAMAEQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDER 41
>d1tyeb2 c.62.1.1 (B:107-354) Integrin beta A domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 248
Score = 25.0 bits (54), Expect = 3.8
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 76 DVVILVDNSGSMAGMRNTTAKLV--LHSLLQTFSNNDFINIFKF 117
D+ L+D S SM + L L + ++ ++N I F
Sbjct: 7 DIYYLMDLSYSMKDDLWSIQNLGTKLATQMRKLTSNLRIGFGAF 50
>d1h2vc2 a.118.1.14 (C:291-480) CBP80, 80KDa nuclear cap-binding
protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 190
Score = 24.7 bits (54), Expect = 4.4
Identities = 8/48 (16%), Positives = 17/48 (35%), Gaps = 5/48 (10%)
Query: 17 LDEVFRENYMADPTLLWQYFGSAK---GFLRTYPDKEDAPAEDLIFDC 61
++ E + ++ ++ K L +YP K P I +
Sbjct: 19 VERFVIEENLHC--IIKSHWKERKTCAAQLVSYPGKNKIPLNYHIVEV 64
>d1scfa_ a.26.1.2 (A:) Stem cell factor, SCF {Human (Homo sapiens)
[TaxId: 9606]}
Length = 131
Score = 24.1 bits (52), Expect = 6.3
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 5/39 (12%)
Query: 99 LHSLLQTFSN-----NDFINIFKFNLTVDTIVPCLGNYS 132
L LL FSN +++ I K VD +V C+ S
Sbjct: 46 LTDLLDKFSNISEGLSNYSIIDKLVNIVDDLVECVKENS 84
>d1twfi1 g.41.3.1 (I:1-49) RBP9 subunit of RNA polymerase II
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 49
Score = 22.8 bits (49), Expect = 6.3
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 46 YPDKEDAPAEDLIFDCRNRQWYIQATT 72
YP +ED L+F+CR + +A +
Sbjct: 15 YP-REDKENNRLLFECRTCSYVEEAGS 40
>d1xfia_ e.50.1.1 (A:) Hypothetical protein At2g17340 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 360
Score = 24.0 bits (52), Expect = 8.8
Identities = 9/37 (24%), Positives = 12/37 (32%)
Query: 49 KEDAPAEDLIFDCRNRQWYIQATTCSKDVVILVDNSG 85
++ + D K VI VDNSG
Sbjct: 182 CQNLVPRPWVIDDLENFQAKWINKSWKKAVIFVDNSG 218
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.137 0.422
Gapped
Lambda K H
0.267 0.0596 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 519,856
Number of extensions: 21467
Number of successful extensions: 43
Number of sequences better than 10.0: 1
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 19
Length of query: 139
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 62
Effective length of database: 1,350,386
Effective search space: 83723932
Effective search space used: 83723932
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (22.6 bits)