BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9196
(362 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q29NV5|RM10_DROPS 39S ribosomal protein L10, mitochondrial OS=Drosophila
pseudoobscura pseudoobscura GN=mRpL10 PE=3 SV=1
Length = 253
Score = 136 bits (342), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 86/246 (34%), Positives = 132/246 (53%), Gaps = 18/246 (7%)
Query: 11 SRTCVLER-----RINTRRPRPPCYEKALFIEISKPKFPPNPEYLLPSHEKCQKARARQW 65
+RT VL+ +IN +RP+ P YE+A + +++PK+P LP C + RA
Sbjct: 14 TRTPVLQFLRFRGKINIQRPKEPHYERARVVAVTQPKYPE-----LPKARSCFQTRA--- 65
Query: 66 LMERKGLNEENIFQNILAKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLD 125
ER EN + I+A+E+ SQ++AI H +S+ A+ V+V + + L
Sbjct: 66 --ERTKEQLENPYNEIIAREVRNWLNHSQLVAIFHLNSITADEIFRVRVQLHKQNLH-LK 122
Query: 126 RYGRATIEKALTNTKYISIMPLFKVSEAIIVSP-EAKVDVLLKTLKKTPQLTLMATIVDN 184
YGR I++A+T T Y +IMPLF + I+ SP + ++ LLK ++ PQ+ L+ IV+
Sbjct: 123 SYGRKIIDQAVTGTPYEAIMPLFHSNHCIVFSPNQQQIGALLKITRRVPQMVLLGGIVEK 182
Query: 185 RLLSKTETEMYATT-NLATQQALLVQTISSVATSLTSQLNHHSTTLVSYLDQHSGTGGEG 243
LLS+ E YA NL QA LVQT++ A L L H LV LD H+ G+
Sbjct: 183 TLLSRNELMAYAQMPNLQGAQAQLVQTLNLAAGQLVQHLQTHQANLVQVLDVHAKGNGDT 242
Query: 244 GSSASE 249
++ +E
Sbjct: 243 NTNTTE 248
>sp|Q9VPL3|RM10_DROME 39S ribosomal protein L10, mitochondrial OS=Drosophila melanogaster
GN=mRpL10 PE=2 SV=1
Length = 248
Score = 127 bits (319), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 80/233 (34%), Positives = 125/233 (53%), Gaps = 16/233 (6%)
Query: 7 ARQFSRTCVLERRINTRRPRPPCYEKALFIEISKPKFPPNPEYLLPSHEKCQKARARQWL 66
A QF R +IN +RP+ P YE+A + +++PK+P LP + C K RA
Sbjct: 18 ALQFLR---FRGKINIQRPKAPHYERARVVAVTQPKYPE-----LPKAKSCFKTRA---- 65
Query: 67 MERKGLNEENIFQNILAKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDR 126
ER +EN + I+A+E+ + S+++A H SS+ A+ V+V + + L
Sbjct: 66 -ERTQQQQENPYNEIIAREVRNWLDHSRLVAFFHLSSITADDIFRVRVQLHKQNLH-LKS 123
Query: 127 YGRATIEKALTNTKYISIMPLFKVSEAIIVSPEA-KVDVLLKTLKKTPQLTLMATIVDNR 185
YG IE+A+ NT+Y +I+PLF + I+ SP+ K LL+ +++ PQ+ L+ IV+
Sbjct: 124 YGSKIIEQAVKNTRYEAIVPLFHSNHCIVFSPDPEKTAALLRIVRRVPQMVLLGGIVEET 183
Query: 186 LLSKTETEMYATT-NLATQQALLVQTISSVATSLTSQLNHHSTTLVSYLDQHS 237
+LS+ + YA L QA LVQT+S L QL H + V LD H+
Sbjct: 184 MLSRNQLVAYAQMPGLHAVQAQLVQTLSQAPGHLIQQLQAHQNSFVQVLDVHA 236
>sp|Q3MHY7|RM10_BOVIN 39S ribosomal protein L10, mitochondrial OS=Bos taurus GN=MRPL10
PE=1 SV=2
Length = 262
Score = 68.9 bits (167), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 87/171 (50%), Gaps = 2/171 (1%)
Query: 74 EENIFQNILAKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRATIE 133
EE +L +EI A F +++MIA+ +M AE ++ ++ + M + ++
Sbjct: 74 EETGLIRLLRREIAAVFRDNRMIAVCQNVAMSAEDKLLMRHQLRKHKILM-KVFPNQILK 132
Query: 134 KALTNTKYISIMPLFKVSEAIIVSPEAKVDVLLKTLKKTPQLTLMATIVDNRLLSKTETE 193
L ++KY +++PLF ++VS E KV +++ LK P L L+ +D+ +LS+
Sbjct: 133 PFLEDSKYQNLLPLFVGHNLLLVSEEPKVKEMVRILKSVPFLPLLGGCIDDTILSRQGFI 192
Query: 194 MYA-TTNLATQQALLVQTISSVATSLTSQLNHHSTTLVSYLDQHSGTGGEG 243
Y+ +LA Q LV ++ + S L HH L + LDQ++ EG
Sbjct: 193 NYSKLPSLALAQGELVGGLTLLTARTHSLLQHHPLQLTALLDQYARQQHEG 243
>sp|Q3TBW2|RM10_MOUSE 39S ribosomal protein L10, mitochondrial OS=Mus musculus GN=Mrpl10
PE=2 SV=2
Length = 262
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 90/181 (49%), Gaps = 4/181 (2%)
Query: 74 EENIFQNILAKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRATIE 133
EE+ +L ++I+A F +++MIA+ ++ AE ++ ++ + + ++
Sbjct: 74 EESGLVRLLRQDIVAVFRDNRMIAVCQNVALSAEDKLLLRHQLRK-HKIFIKVFPSQVLK 132
Query: 134 KALTNTKYISIMPLFKVSEAIIVSPEAKVDVLLKTLKKTPQLTLMATIVDNRLLSKTETE 193
L N+KY +++PLF ++VS E KV +++ LK P L L+ VD+ +LS+
Sbjct: 133 PFLENSKYRNLLPLFVGHNLLLVSEEPKVKEMVRVLKSVPFLPLLGGCVDDTILSRQGLV 192
Query: 194 MYA-TTNLATQQALLVQTISSVATSLTSQLNHHSTTLVSYLDQHSGTGGEG--GSSASEA 250
YA +L Q LV ++ + L H L S LDQ+ EG +SA+E
Sbjct: 193 DYAKLPSLDQLQGQLVGGLTHLMAQTRYLLQHQPVQLTSLLDQYVKEQNEGDCATSANEK 252
Query: 251 L 251
L
Sbjct: 253 L 253
>sp|P0C2C4|RM10_RAT 39S ribosomal protein L10, mitochondrial OS=Rattus norvegicus
GN=Mrpl10 PE=1 SV=1
Length = 263
Score = 62.0 bits (149), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 85/176 (48%), Gaps = 2/176 (1%)
Query: 74 EENIFQNILAKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRATIE 133
EE+ +L ++I A F +++MIA+ ++ AE ++ ++ + + ++
Sbjct: 75 EESGLIRLLRRDIAAVFRDNRMIAVCQNVALSAEDKLLLRHQLRK-HKIFIKVFPSQVLK 133
Query: 134 KALTNTKYISIMPLFKVSEAIIVSPEAKVDVLLKTLKKTPQLTLMATIVDNRLLSKTETE 193
L ++KY +++PLF ++VS E KV +++ LK P L L+ +D+ +LS+
Sbjct: 134 PFLEDSKYQNLLPLFVGHNLLLVSEEPKVKEMVRILKSVPFLPLLGGCIDDTILSRQGFV 193
Query: 194 MYA-TTNLATQQALLVQTISSVATSLTSQLNHHSTTLVSYLDQHSGTGGEGGSSAS 248
YA +L Q LV ++ + L H L S LDQ+ EG + S
Sbjct: 194 EYAKLPSLDRLQGELVGGLTHLTAQTRYLLQHQPVQLTSLLDQYVRQQHEGDCATS 249
>sp|Q7Z7H8|RM10_HUMAN 39S ribosomal protein L10, mitochondrial OS=Homo sapiens GN=MRPL10
PE=1 SV=3
Length = 261
Score = 58.9 bits (141), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 83/165 (50%), Gaps = 2/165 (1%)
Query: 73 NEENIFQNILAKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRATI 132
EE +L +EI A F++++MIA+ ++ AE ++ ++ + M + +
Sbjct: 73 QEEIGLIRLLRREIAAVFQDNRMIAVCQNVALSAEDKLLMRHQLRKHKILM-KVFPNQVL 131
Query: 133 EKALTNTKYISIMPLFKVSEAIIVSPEAKVDVLLKTLKKTPQLTLMATIVDNRLLSKTET 192
+ L ++KY +++PLF ++VS E KV +++ L+ P L L+ +D+ +LS+
Sbjct: 132 KPFLEDSKYQNLLPLFVGHNMLLVSEEPKVKEMVRILRTVPFLPLLGGCIDDTILSRQGF 191
Query: 193 EMYATT-NLATQQALLVQTISSVATSLTSQLNHHSTTLVSYLDQH 236
Y+ +L Q LV ++ + S L H L + LDQ+
Sbjct: 192 INYSKLPSLPLVQGELVGGLTCLTAQTHSLLQHQPLQLTTLLDQY 236
>sp|Q5BJB7|RM10_DANRE 39S ribosomal protein L10, mitochondrial OS=Danio rerio GN=mrpl10
PE=2 SV=1
Length = 252
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 88/183 (48%), Gaps = 8/183 (4%)
Query: 74 EENIFQNILAKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRATIE 133
EE+ +L K++ F+E +MIA+ +++ AE +K K+ + + ++ +
Sbjct: 70 EESSLAVMLRKDLENLFQEYKMIAVAQNNAISAEDMIHLKHRLKKHAINV--KFFPNQVT 127
Query: 134 KALTNTK-YISIMPLFKVSEAIIVSPEAKVDVLLKTLKKTPQLTLMATIVDNRLLSKTET 192
++ N+ Y ++ PL ++ S E KV +L+ L+ PQ+ L+ ++N L S
Sbjct: 128 RSFLNSSIYGNMSPLIFGETVLLASKEPKVKEMLQALRHNPQIVLLGACIENTLFSYQGI 187
Query: 193 EMYATT-NLATQQALLVQTISSVATSLTSQLNHH----STTLVSYLDQHSGTGGEGGSSA 247
Y+ ++A + LV ++ + + S L+HH S L Y+ Q S + +S
Sbjct: 188 LSYSKLPSIAIIRGELVSGLTMMTSKTVSMLHHHPAHLSALLQQYVKQQSSADTDKDASI 247
Query: 248 SEA 250
EA
Sbjct: 248 QEA 250
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.306 0.120 0.317
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 118,242,484
Number of Sequences: 539616
Number of extensions: 4471267
Number of successful extensions: 55461
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 1513
Number of HSP's that attempted gapping in prelim test: 29886
Number of HSP's gapped (non-prelim): 14723
length of query: 362
length of database: 191,569,459
effective HSP length: 119
effective length of query: 243
effective length of database: 127,355,155
effective search space: 30947302665
effective search space used: 30947302665
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 62 (28.5 bits)