Query psy9196
Match_columns 362
No_of_seqs 181 out of 1049
Neff 4.5
Searched_HMMs 46136
Date Fri Aug 16 21:20:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9196.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9196hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4241|consensus 100.0 1.2E-45 2.6E-50 340.0 11.8 228 7-247 14-244 (245)
2 PRK00099 rplJ 50S ribosomal pr 100.0 1.2E-39 2.6E-44 291.5 21.8 164 77-241 4-171 (172)
3 cd05797 Ribosomal_L10 Ribosoma 100.0 3.8E-37 8.2E-42 270.8 19.1 150 77-227 3-156 (157)
4 COG0244 RplJ Ribosomal protein 100.0 1.6E-32 3.4E-37 248.5 19.1 164 77-241 6-174 (175)
5 cd00379 Ribosomal_L10_P0 Ribos 100.0 5.7E-31 1.2E-35 229.0 18.8 148 79-227 3-154 (155)
6 PF00466 Ribosomal_L10: Riboso 99.8 1.7E-19 3.6E-24 147.4 10.4 93 77-170 4-100 (100)
7 cd05796 Ribosomal_P0_like Ribo 99.5 2.5E-14 5.5E-19 128.0 8.1 87 79-168 3-99 (163)
8 cd05795 Ribosomal_P0_L10e Ribo 99.5 3E-14 6.5E-19 128.9 8.5 88 79-168 3-98 (175)
9 PRK04019 rplP0 acidic ribosoma 99.5 9E-14 1.9E-18 137.0 9.8 90 77-168 6-101 (330)
10 PTZ00135 60S acidic ribosomal 99.4 1.6E-12 3.6E-17 127.6 9.9 89 79-169 10-106 (310)
11 PTZ00240 60S ribosomal protein 98.6 1.8E-07 4E-12 92.8 9.8 87 79-167 8-110 (323)
12 KOG0816|consensus 97.0 0.0034 7.4E-08 59.2 8.7 80 78-160 22-108 (223)
13 KOG0815|consensus 96.6 0.0062 1.3E-07 58.2 7.2 79 80-160 11-94 (245)
14 CHL00197 carA carbamoyl-phosph 70.1 6.9 0.00015 40.3 4.8 77 94-186 193-275 (382)
15 PRK13108 prolipoprotein diacyl 68.3 22 0.00049 37.6 8.3 7 205-211 257-263 (460)
16 COG1534 Predicted RNA-binding 51.9 75 0.0016 27.1 7.1 73 83-158 7-86 (97)
17 PLN02771 carbamoyl-phosphate s 50.7 20 0.00044 37.4 4.3 76 95-186 242-322 (415)
18 PF01740 STAS: STAS domain; I 50.3 45 0.00097 27.1 5.5 68 77-145 22-105 (117)
19 cd05797 Ribosomal_L10 Ribosoma 49.6 22 0.00048 31.3 3.9 26 213-238 131-156 (157)
20 COG0512 PabA Anthranilate/para 46.0 27 0.00059 33.0 4.0 78 95-186 4-86 (191)
21 TIGR00377 ant_ant_sig anti-ant 45.1 1.3E+02 0.0028 23.9 7.4 66 82-148 30-103 (108)
22 PRK00758 GMP synthase subunit 41.9 40 0.00086 30.2 4.3 76 95-186 1-79 (184)
23 TIGR00253 RNA_bind_YhbY putati 41.6 1.3E+02 0.0027 25.4 6.9 74 83-159 6-86 (95)
24 cd07043 STAS_anti-anti-sigma_f 40.1 1.7E+02 0.0036 22.4 7.4 65 82-147 26-97 (99)
25 PRK08007 para-aminobenzoate sy 38.8 36 0.00078 31.0 3.5 77 96-186 3-84 (187)
26 PLN02591 tryptophan synthase 37.8 3E+02 0.0065 26.8 9.8 90 84-180 96-195 (250)
27 PLN02335 anthranilate synthase 35.9 38 0.00082 31.9 3.3 80 92-185 17-102 (222)
28 PRK06774 para-aminobenzoate sy 35.8 27 0.00059 31.6 2.3 64 111-186 14-84 (191)
29 PF13671 AAA_33: AAA domain; P 34.8 1.6E+02 0.0035 24.2 6.7 48 78-127 55-102 (143)
30 PF11909 NdhN: NADH-quinone ox 34.6 20 0.00043 32.8 1.1 111 86-201 10-131 (154)
31 TIGR01368 CPSaseIIsmall carbam 34.4 55 0.0012 33.5 4.4 77 94-186 174-255 (358)
32 PRK12564 carbamoyl phosphate s 33.4 57 0.0012 33.4 4.3 77 94-186 178-260 (360)
33 PRK00099 rplJ 50S ribosomal pr 32.7 59 0.0013 29.2 3.9 27 201-227 142-168 (172)
34 COG1099 Predicted metal-depend 32.7 1.1E+02 0.0025 30.0 6.0 56 50-122 69-129 (254)
35 cd07041 STAS_RsbR_RsbS_like Su 30.3 2.9E+02 0.0062 22.1 8.1 61 82-143 28-96 (109)
36 PRK13108 prolipoprotein diacyl 30.3 1.6E+02 0.0035 31.3 7.1 6 216-221 257-262 (460)
37 PLN02889 oxo-acid-lyase/anthra 29.5 69 0.0015 36.9 4.5 81 93-185 82-173 (918)
38 PRK12838 carbamoyl phosphate s 29.5 60 0.0013 33.2 3.7 78 93-186 167-249 (354)
39 cd07042 STAS_SulP_like_sulfate 28.1 2.9E+02 0.0062 21.4 7.4 65 81-146 26-99 (107)
40 PRK09522 bifunctional glutamin 27.8 52 0.0011 35.3 3.1 75 94-183 3-86 (531)
41 cd02407 PTH2_family Peptidyl-t 27.6 4E+02 0.0086 22.9 7.9 62 85-160 40-101 (115)
42 PRK10343 RNA-binding protein Y 27.5 2.7E+02 0.0058 23.6 6.7 74 83-159 8-88 (97)
43 CHL00101 trpG anthranilate syn 26.8 1.1E+02 0.0024 27.8 4.6 77 95-186 1-84 (190)
44 PF08248 Tryp_FSAP: Tryptophyl 26.0 35 0.00076 18.8 0.7 8 40-47 2-9 (12)
45 TIGR00283 arch_pth2 peptidyl-t 25.9 4.3E+02 0.0094 22.8 8.0 62 85-160 40-101 (115)
46 PF00619 CARD: Caspase recruit 25.0 2.9E+02 0.0062 21.3 6.1 54 181-234 25-83 (85)
47 TIGR02886 spore_II_AA anti-sig 24.9 3.6E+02 0.0077 21.5 7.5 63 82-145 26-96 (106)
48 PRK08659 2-oxoglutarate ferred 24.4 1.1E+02 0.0025 31.2 4.7 96 92-195 273-371 (376)
49 PF14258 DUF4350: Domain of un 24.3 3.1E+02 0.0067 20.6 6.4 56 110-178 8-69 (70)
50 PF05165 GGDN: GGDN family; I 24.0 97 0.0021 30.5 3.9 71 129-204 160-233 (246)
51 COG1933 Archaeal DNA polymeras 23.7 24 0.00052 34.6 -0.3 74 7-93 160-240 (253)
52 COG2429 Archaeal GTP cyclohydr 23.4 1.6E+02 0.0034 29.0 5.1 73 130-207 165-240 (250)
53 COG1831 Predicted metal-depend 23.3 1.7E+02 0.0037 29.4 5.4 49 82-130 146-194 (285)
54 cd02430 PTH2 Peptidyl-tRNA hyd 22.9 4.9E+02 0.011 22.4 7.9 62 85-160 40-101 (115)
55 PF03401 TctC: Tripartite tric 22.8 5.5E+02 0.012 24.7 8.8 97 80-180 3-111 (274)
56 PRK07765 para-aminobenzoate sy 22.5 1.4E+02 0.0031 27.8 4.6 80 96-186 3-88 (214)
57 PRK05637 anthranilate synthase 22.5 1.7E+02 0.0038 27.3 5.2 76 96-186 4-85 (208)
58 PRK13111 trpA tryptophan synth 22.1 6.8E+02 0.015 24.3 9.3 93 85-181 108-208 (258)
59 KOG4241|consensus 22.1 44 0.00095 32.4 1.1 52 6-64 5-56 (245)
60 PF01380 SIS: SIS domain SIS d 22.1 2E+02 0.0043 23.3 4.9 38 89-127 50-87 (131)
61 KOG3771|consensus 21.8 8.5E+02 0.018 26.2 10.4 35 243-277 244-278 (460)
62 PRK03511 minC septum formation 21.2 4.7E+02 0.01 25.0 7.9 58 82-140 28-94 (228)
63 PF14226 DIOX_N: non-haem diox 20.4 3.1E+02 0.0066 22.2 5.7 38 79-117 13-50 (116)
No 1
>KOG4241|consensus
Probab=100.00 E-value=1.2e-45 Score=340.01 Aligned_cols=228 Identities=23% Similarity=0.255 Sum_probs=211.5
Q ss_pred hhhheeeeeeccc-ccccCCCCCchhHHHHHHhhCCCCCCCCCCCCCChhhhhhhHHHHHHHhhhcccccchHHHHHHHH
Q psy9196 7 ARQFSRTCVLERR-INTRRPRPPCYEKALFIEISKPKFPPNPEYLLPSHEKCQKARARQWLMERKGLNEENIFQNILAKE 85 (362)
Q Consensus 7 ~~~~~~~~VR~g~-~ni~rpr~pHfeR~kl~AVteP~yppp~~~~~p~~e~C~~~~~~~~~e~~e~~~e~npy~~iLv~E 85 (362)
+|--+.|.+|+|. ++++|++.+||+|++++|||+ |+||.. +.++-|.++.+++ ++++++|..++.+|
T Consensus 14 ~r~pslq~~R~~~k~~~rr~~~~h~~r~~~~aVt~--~ipP~l---~k~~sc~ksert~-------~q~e~~l~~~~~re 81 (245)
T KOG4241|consen 14 VRSPSLQYPRPTPKHFKRRLFEAHLKRELPPAVTM--CIPPGL---IKRESCGKSERTK-------EQSEVELALSNLRE 81 (245)
T ss_pred ccCccccccccCchhhhhcchhhhcccccCccccc--ccCCCC---ccccccCCCCCCc-------chhhhhHHHHHHHH
Confidence 4677899999996 666666667999999999999 555554 3348899986555 88999999999999
Q ss_pred HHHHHhcCCeEEEEecCCCcHHHHHHHHHHHHHcCCeeEEEechhHHHHHHhcCCCCCCcCccccceEEEEcCCc-hHHH
Q psy9196 86 ILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRATIEKALTNTKYISIMPLFKVSEAIIVSPEA-KVDV 164 (362)
Q Consensus 86 l~e~f~~Sk~I~V~~y~GLtVed~~~LR~~LRk~gi~~~KV~KNtL~r~ALe~T~~e~L~plF~GpTAIafS~ep-~aK~ 164 (362)
+..||+++++++|||+..++++|++..|++||++|++ ||.|+|.|++.++++|+|++|.|+|+|.+||+|++|+ ++|.
T Consensus 82 ~~~v~~~~R~~Avcq~~~v~a~d~~~~r~QLrk~ni~-~ksygnkIlk~~~~~t~y~~l~plfvgnh~ill~~d~~kik~ 160 (245)
T KOG4241|consen 82 DWMVREEFRVMAVCQFLPVPARDLWFARNQLRKKNIE-FKSYGNKILKKIFDKTPYSSLNPLFVGNHAILLAKDISKIKS 160 (245)
T ss_pred HHHHHhhhhheeeeecccCcHHHHHHHHHHHHhccch-hhhchHHHHHHHHhcCchhhhhhheeccceEEEcCChHHHHH
Confidence 9999999999999999999999999999999999999 9999999999999999999999999999999999997 9999
Q ss_pred HHHHHhhCCCeEEEEEEEcCeecCHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCCC
Q psy9196 165 LLKTLKKTPQLTLMATIVDNRLLSKTETEMYAT-TNLATQQALLVQTISSVATSLTSQLNHHSTTLVSYLDQHSGTGGEG 243 (362)
Q Consensus 165 llkf~Kk~pkL~LkGGiVEGkvLs~~eI~~LAk-PSlEeL~AqLvg~LqsPasqLvs~Lqa~~~~Lv~vLdq~~kqq~e~ 243 (362)
|+.++++.|.+.++||+|++++++++++.+||| ||++.++|+||+.|....++|...|+.+++++..+||.|++.+.++
T Consensus 161 ~lri~r~vP~~~llgG~I~dtvlsRnqlv~yaklpsL~~vqa~lvQ~l~qq~~~l~~ql~~~qr~~~svld~h~k~~~~~ 240 (245)
T KOG4241|consen 161 ILRITRKVPLVMLLGGRIVDTVLSRNQLVEYAKLPSLEDVQAHLVQLLGQQVAQLTIQLDTVQRHLPSVLDSHIKTNQEA 240 (245)
T ss_pred HHHHHhhcchheecccchHHHHHHHHHHHHHhhCCChHHHHHHHHHHhhhhHHHHHHHHHHHHhccchHhhccCCCCccc
Confidence 999999999999999999999999999999999 9999999999999999999999999999999999999999998876
Q ss_pred CCCc
Q psy9196 244 GSSA 247 (362)
Q Consensus 244 ~~~~ 247 (362)
...+
T Consensus 241 ~~Pk 244 (245)
T KOG4241|consen 241 KKPK 244 (245)
T ss_pred cCCC
Confidence 5443
No 2
>PRK00099 rplJ 50S ribosomal protein L10; Reviewed
Probab=100.00 E-value=1.2e-39 Score=291.48 Aligned_cols=164 Identities=17% Similarity=0.216 Sum_probs=157.5
Q ss_pred hHHHHHHHHHHHHHhcCCeEEEEecCCCcHHHHHHHHHHHHHcCCeeEEEechhHHHHHHhcCCCCCCcCccccceEEEE
Q psy9196 77 IFQNILAKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRATIEKALTNTKYISIMPLFKVSEAIIV 156 (362)
Q Consensus 77 py~~iLv~El~e~f~~Sk~I~V~~y~GLtVed~~~LR~~LRk~gi~~~KV~KNtL~r~ALe~T~~e~L~plF~GpTAIaf 156 (362)
.-+..++++|+++|+++++++|++|+||+++++++||++||++|+. |+|+||||+++|+++++|+.|.++|+|+|+|+|
T Consensus 4 ~~K~~~v~~l~~~l~~~~~v~v~~~~gl~~~~~~~lR~~lr~~~~~-~~V~KNtL~~~Al~~~~~~~l~~~l~G~~al~f 82 (172)
T PRK00099 4 EEKKEIVAELAEKLKKAQSAVVADYRGLTVAQMTELRKKLREAGVE-YKVVKNTLARRALEGTGFEGLDDLLKGPTAIAF 82 (172)
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEecCCCcHHHHHHHHHHHHHcCCE-EEEehhHHHHHHHhcCCchhhhhhCcCCeEEEE
Confidence 3466799999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred cC-Cc--hHHHHHHHHhhCCCeEEEEEEEcCeecCHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy9196 157 SP-EA--KVDVLLKTLKKTPQLTLMATIVDNRLLSKTETEMYAT-TNLATQQALLVQTISSVATSLTSQLNHHSTTLVSY 232 (362)
Q Consensus 157 S~-ep--~aK~llkf~Kk~pkL~LkGGiVEGkvLs~~eI~~LAk-PSlEeL~AqLvg~LqsPasqLvs~Lqa~~~~Lv~v 232 (362)
++ || .+|.+.+|.|++|++.|+||++||++|+.++|++||+ ||+++|++||+|+|++|+++|+++|++++++|+++
T Consensus 83 s~~d~~~~~k~l~~f~K~~~~~~l~gg~~eg~~l~~~~i~~la~LPs~~el~a~l~~~l~~p~~~l~~~L~~~~~~l~~~ 162 (172)
T PRK00099 83 SYEDPVAAAKVLKDFAKDNKKLEIKGGAIEGKVLDAEEVKALAKLPSREELLAKLLGVLQAPATKLAGVLNAPPSKLARV 162 (172)
T ss_pred eCCChHHHHHHHHHHHhhCcCceEEEEEECCEEcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 95 45 6788889999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHhccC
Q psy9196 233 LDQHSGTGG 241 (362)
Q Consensus 233 Ldq~~kqq~ 241 (362)
|+++.++++
T Consensus 163 L~~~~~~~~ 171 (172)
T PRK00099 163 LKALAEKKE 171 (172)
T ss_pred HHHHHHhhc
Confidence 999999874
No 3
>cd05797 Ribosomal_L10 Ribosomal protein L10 family, L10 subfamily; composed of bacterial 50S ribosomal protein and eukaryotic mitochondrial 39S ribosomal protein, L10. L10 occupies the L7/L12 stalk of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-in
Probab=100.00 E-value=3.8e-37 Score=270.82 Aligned_cols=150 Identities=19% Similarity=0.263 Sum_probs=144.1
Q ss_pred hHHHHHHHHHHHHHhcCCeEEEEecCCCcHHHHHHHHHHHHHcCCeeEEEechhHHHHHHhcCCCCCCcCccccceEEEE
Q psy9196 77 IFQNILAKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRATIEKALTNTKYISIMPLFKVSEAIIV 156 (362)
Q Consensus 77 py~~iLv~El~e~f~~Sk~I~V~~y~GLtVed~~~LR~~LRk~gi~~~KV~KNtL~r~ALe~T~~e~L~plF~GpTAIaf 156 (362)
..+..++++|+++|+++++++|+||+||+++++++||++||++|++ |+|+||||+|+|+++++|+.|.++|+|||+++|
T Consensus 3 ~~K~~~v~~l~~~l~~~~~v~v~~~~gl~~~~~~~lR~~lr~~~~~-~~V~KNtL~~~Al~~t~~~~l~~~l~G~~al~f 81 (157)
T cd05797 3 EKKEEIVAELKEKLKEAKSVVVADYRGLTVAQLTELRKELREAGVK-LKVVKNTLAKRALEGTGFEDLDDLLKGPTAIAF 81 (157)
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEecCCCcHHHHHHHHHHHHHcCCE-EEEehhHHHHHHHhcCCchhhHhhCcCCEEEEE
Confidence 4567899999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred cCC-c--hHHHHHHHHhhCCCeEEEEEEEcCeecCHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy9196 157 SPE-A--KVDVLLKTLKKTPQLTLMATIVDNRLLSKTETEMYAT-TNLATQQALLVQTISSVATSLTSQLNHHST 227 (362)
Q Consensus 157 S~e-p--~aK~llkf~Kk~pkL~LkGGiVEGkvLs~~eI~~LAk-PSlEeL~AqLvg~LqsPasqLvs~Lqa~~~ 227 (362)
+++ | .+|.+.+|.|+++++.|+||++||++|+.++|++||+ ||+|+|++||+|+|++|+++|+++|+++++
T Consensus 82 ~~~d~~~~~k~l~~f~k~~~~~~~~gg~~eg~~l~~~~v~~la~LPs~e~l~a~l~~~l~~p~~~l~~~L~~~~~ 156 (157)
T cd05797 82 SEEDPVAAAKVLKDFAKENKKLEIKGGVVEGKVLDAEEVKALAKLPSREELLAQLLGLLQAPATKLVRVLNAPAS 156 (157)
T ss_pred eCCChHHHHHHHHHHHHhCCCcEEEEEEECCEecCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 976 5 6788899999999999999999999999999999999 999999999999999999999999998864
No 4
>COG0244 RplJ Ribosomal protein L10 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.6e-32 Score=248.46 Aligned_cols=164 Identities=17% Similarity=0.190 Sum_probs=157.2
Q ss_pred hHHHHHHHHHHHHHhcCCeEEEEecCCCcHHHHHHHHHHHHHcCCeeEEEechhHHHHHHhcCCCCCCcCccccceEEEE
Q psy9196 77 IFQNILAKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRATIEKALTNTKYISIMPLFKVSEAIIV 156 (362)
Q Consensus 77 py~~iLv~El~e~f~~Sk~I~V~~y~GLtVed~~~LR~~LRk~gi~~~KV~KNtL~r~ALe~T~~e~L~plF~GpTAIaf 156 (362)
..+..++++|++.|+++++++|+||+||++.++++||++||..|+. |+|+||||+++|+++++++.|.++|+|||+|+|
T Consensus 6 e~K~~~v~el~e~~~~s~~~~i~dy~Gl~~~ql~~lR~~lr~~g~~-lkV~KNtL~~rAl~~~~~e~l~~~l~Gp~ai~f 84 (175)
T COG0244 6 EWKKELVAELKELIKESPSVVIVDYRGLTVAQLTELRKKLREAGAK-LKVVKNTLLRRALEEAGLEGLDDLLKGPTAIAF 84 (175)
T ss_pred HHHHHHHHHHHHHHhhCCEEEEEEeCCCcHHHHHHHHHHHHhCCcE-EEEEhhHHHHHHHHhcchhhHHHhccCCeEEEE
Confidence 5677899999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred cC-Cc--hHHHHHHHHhhC-CCeEEEEEEEcCeecCHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy9196 157 SP-EA--KVDVLLKTLKKT-PQLTLMATIVDNRLLSKTETEMYAT-TNLATQQALLVQTISSVATSLTSQLNHHSTTLVS 231 (362)
Q Consensus 157 S~-ep--~aK~llkf~Kk~-pkL~LkGGiVEGkvLs~~eI~~LAk-PSlEeL~AqLvg~LqsPasqLvs~Lqa~~~~Lv~ 231 (362)
++ || .+|.+.+|.|.+ +.+.++||++||..++..+++++++ |++++++++++|.|++|.+++++.|++.+..+.+
T Consensus 85 s~~dp~~~~K~~~~f~k~~~~~~~~~~~~~eg~~l~~~~v~~~aklp~~~el~~~l~g~~~ap~~~~~~~L~a~~~~~~~ 164 (175)
T COG0244 85 SNEDPVAAAKLLKDFAKEAGDKAPIKGGVPEGKVLGAAEVIALAKLPSKEELVVMLLGVLQAPATKLLRALKAVPDKVGL 164 (175)
T ss_pred ecCCHHHHHHHHHHHhhhhcccceEEEEEecCcccCHHHHHHHhcCCcHHHHHHHHHHhhHhhHHHHHHHHhccHHHHhh
Confidence 96 56 688899999996 9999999999999999999999999 9999999999999999999999999999999999
Q ss_pred HHHHHHhccC
Q psy9196 232 YLDQHSGTGG 241 (362)
Q Consensus 232 vLdq~~kqq~ 241 (362)
.+.++.+++.
T Consensus 165 ~~~a~~~~g~ 174 (175)
T COG0244 165 KLLAAYEKGV 174 (175)
T ss_pred HHHHhhccCC
Confidence 9999887653
No 5
>cd00379 Ribosomal_L10_P0 Ribosomal protein L10 family; composed of the large subunit ribosomal protein called L10 in bacteria, P0 in eukaryotes, and L10e in archaea, as well as uncharacterized P0-like eukaryotic proteins. In all three kingdoms, L10 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been sho
Probab=99.97 E-value=5.7e-31 Score=228.99 Aligned_cols=148 Identities=18% Similarity=0.238 Sum_probs=141.3
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCCCcHHHHHHHHHHHHHcCCeeEEEechhHHHHHHhcCCCCCCcCccccceEEEEcC
Q psy9196 79 QNILAKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRATIEKALTNTKYISIMPLFKVSEAIIVSP 158 (362)
Q Consensus 79 ~~iLv~El~e~f~~Sk~I~V~~y~GLtVed~~~LR~~LRk~gi~~~KV~KNtL~r~ALe~T~~e~L~plF~GpTAIafS~ 158 (362)
+..++++++++|+++++++|+||+||+++++.+||++|++.|++ ++|+||+||++||++++|+++.++|+|+++|+|++
T Consensus 3 K~~~v~~l~~~l~~~~~v~v~~~~~l~~~~~~~lR~~l~~~~~~-~~v~KNtl~~~Al~~t~~~~~~~~l~G~~~~~f~~ 81 (155)
T cd00379 3 KEELVEELKELLKKYKSVVVVDYRGLTVAQLTELRKELRESGAK-LKVGKNTLMRRALKGTGFEELKPLLKGPTALAFTN 81 (155)
T ss_pred hHHHHHHHHHHHHhCCEEEEEecCCCcHHHHHHHHHHHHHcCCE-EEEEehHHHHHHHcCCCccchhhhCcCCEEEEEeC
Confidence 56799999999999999999999999999999999999999999 99999999999999999999999999999999997
Q ss_pred C-c--hHHHHHHHHhhCCCeEEEEEEEcCeecCHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy9196 159 E-A--KVDVLLKTLKKTPQLTLMATIVDNRLLSKTETEMYAT-TNLATQQALLVQTISSVATSLTSQLNHHST 227 (362)
Q Consensus 159 e-p--~aK~llkf~Kk~pkL~LkGGiVEGkvLs~~eI~~LAk-PSlEeL~AqLvg~LqsPasqLvs~Lqa~~~ 227 (362)
+ | ..|.+.+|.+.++++.++||+++|++++++++..|++ |++++++++++++|++|+.++++.|++++.
T Consensus 82 ~~~~~~~k~~~~~~k~~~~~~~k~g~~~~~v~~~~~~~~l~~lp~~~~~~~~~v~~l~~~~~~l~~~L~~~~~ 154 (155)
T cd00379 82 EDPVEVAKVLKDFAKENKKLFAKGGVVAGKVLDPAGVTALAKLPSREELLAMLIGLLKAPIAKLARLLNALGI 154 (155)
T ss_pred CChHHHHHHHHHHHHhCCCceEEEEEEcCEecCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 6 4 5778889999999999999999999999999999999 999999999999999999999999988653
No 6
>PF00466 Ribosomal_L10: Ribosomal protein L10; InterPro: IPR001790 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. On the basis of sequence similarities the following prokaryotic and eukaryotic ribosomal proteins can be grouped: Bacterial 50S ribosomal protein L10; Archaebacterial acidic ribosomal protein P0 homologue (L10E); Eukaryotic 60S ribosomal protein P0 (L10E). This entry represents the ribosomal protein L10P family, with includes the above mentioned ribosomal proteins.; GO: 0042254 ribosome biogenesis, 0005622 intracellular; PDB: 3A1Y_G 3D5D_J 3PYT_I 3PYV_I 3D5B_J 3PYO_I 3PYR_I 3MS1_I 3MRZ_I 1VQ9_G ....
Probab=99.81 E-value=1.7e-19 Score=147.38 Aligned_cols=93 Identities=23% Similarity=0.311 Sum_probs=84.2
Q ss_pred hHHHHHHHHHHHHHhcCCeEEEEecCCCcHHHHHHHHHHHHHcCCeeEEEechhHHHHHHhcCCCC-CCcCccccceEEE
Q psy9196 77 IFQNILAKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRATIEKALTNTKYI-SIMPLFKVSEAII 155 (362)
Q Consensus 77 py~~iLv~El~e~f~~Sk~I~V~~y~GLtVed~~~LR~~LRk~gi~~~KV~KNtL~r~ALe~T~~e-~L~plF~GpTAIa 155 (362)
.-+..++++|+++|+++++++|++|+||++.++++||++||.+|+. ++|+||+|+++|+++++++ .|.++|+|+|+++
T Consensus 4 ~~K~~~v~~~~~~l~~~~~v~v~~~~~l~~~~~~~lR~~l~~~~~~-~~v~KN~l~~~Al~~~~~~~~l~~~l~G~~~~i 82 (100)
T PF00466_consen 4 EKKEEIVEELKELLKKSKYVIVVDYNGLSANQLQELRKELRKKGGK-FKVVKNTLMKKALKNTGFEEALSPLLKGPTALI 82 (100)
T ss_dssp HHHHHHHHHHHHHHHCSSEEEEEECTTSCHHHHHHHHHHHHHHTEE-EEECSHHHHHHHHHHHHTSSSSSCCTSSSEEEE
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEEeCCCCHHHHHHHHHHHHhcCcE-EEEecHHHHHHHHhcCccccCccccccCCEEEE
Confidence 4467799999999999999999999999999999999999999999 9999999999999999999 9999999999999
Q ss_pred EcCCc---hHHHHHHHHh
Q psy9196 156 VSPEA---KVDVLLKTLK 170 (362)
Q Consensus 156 fS~ep---~aK~llkf~K 170 (362)
|++++ .+|.+.+|.|
T Consensus 83 f~~~d~~~~~k~l~~~~K 100 (100)
T PF00466_consen 83 FSNEDPFEIAKILKKFAK 100 (100)
T ss_dssp EESSSHHHHHHHHHHSTT
T ss_pred EECCCHHHHHHHHHHhcC
Confidence 99653 4555555543
No 7
>cd05796 Ribosomal_P0_like Ribosomal protein L10 family, P0-like protein subfamily; composed of uncharacterized eukaryotic proteins with similarity to the 60S ribosomal protein P0, including the Saccharomyces cerevisiae protein called mRNA turnover protein 4 (MRT4). MRT4 may be involved in mRNA decay. P0 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. It occupies the L7/L12 stalk of the ribosome. The stalk is known to contain the binding site for elongation factors EF-G and EF-Tu; however, there is disagreement as to whether or not P0 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, P0 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WAS
Probab=99.52 E-value=2.5e-14 Score=128.03 Aligned_cols=87 Identities=11% Similarity=0.144 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCCCcHHHHHHHHHHHHHcCCeeEEEechhHHHHHHhcCC-------CCCCcCccccc
Q psy9196 79 QNILAKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRATIEKALTNTK-------YISIMPLFKVS 151 (362)
Q Consensus 79 ~~iLv~El~e~f~~Sk~I~V~~y~GLtVed~~~LR~~LRk~gi~~~KV~KNtL~r~ALe~T~-------~e~L~plF~Gp 151 (362)
+..++++|++.|++++.++|++|.||++.++++||+.||.. . |+|+|||||++||++++ ++.|.++|+|+
T Consensus 3 K~~~v~~l~e~l~~y~~v~iv~~~gl~~~ql~~iR~~lr~~--~-~~v~KNtl~~~Al~~~~~~~~~~~~~~L~~~l~G~ 79 (163)
T cd05796 3 KQKLVENIREAVDKYKYIYVFSVDNMRNNKLKDIRQEWKDS--R-FFFGKNKVMQVALGRTPEDEYKPNLHKLSKYLKGQ 79 (163)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEecCCCHHHHHHHHHHhcCC--E-EEEEchHHHHHHHhhCccccccccHHHHHHHhCCC
Confidence 56699999999999999999999999999999999999975 8 99999999999999886 66799999999
Q ss_pred eEEEEcCC-c-h-HHHHHHH
Q psy9196 152 EAIIVSPE-A-K-VDVLLKT 168 (362)
Q Consensus 152 TAIafS~e-p-~-aK~llkf 168 (362)
++|+|+++ | . ++.+.+|
T Consensus 80 ~~lift~~dp~~v~k~l~~~ 99 (163)
T cd05796 80 VGLLFTNEPPEEVIEYFDSY 99 (163)
T ss_pred EEEEEECCCHHHHHHHHHHc
Confidence 99999975 4 3 3444444
No 8
>cd05795 Ribosomal_P0_L10e Ribosomal protein L10 family, P0 and L10e subfamily; composed of eukaryotic 60S ribosomal protein P0 and the archaeal P0 homolog, L10e. P0 or L10e forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-interacting protein (WIP). These eukaryotic and archaeal P0 sequences have an additional C-terminal domain homologous with acidic proteins P1 and P2.
Probab=99.52 E-value=3e-14 Score=128.88 Aligned_cols=88 Identities=11% Similarity=0.164 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCCCcHHHHHHHHHHHHHcCCeeEEEechhHHHHHHhcCC-----CCCCcCccccceE
Q psy9196 79 QNILAKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRATIEKALTNTK-----YISIMPLFKVSEA 153 (362)
Q Consensus 79 ~~iLv~El~e~f~~Sk~I~V~~y~GLtVed~~~LR~~LRk~gi~~~KV~KNtL~r~ALe~T~-----~e~L~plF~GpTA 153 (362)
+..++++|++.|++++.++|++|.||++.++.+||+.||.. +. |+|+||+||++||++++ ++.|.++|+|+++
T Consensus 3 K~~~v~el~e~l~~~~~v~v~~~~gl~~~ql~~lR~~lr~~-~~-~~v~KNtL~~~Al~~~~~~~~~~~~L~~~l~G~~~ 80 (175)
T cd05795 3 KKEYVEKLTELLKSYPKVLIVDADNVGSKQLQKIRRSLRGK-AE-ILMGKNTLIRRALRNLGDENPELEKLLPYLKGNVG 80 (175)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEecCCChHHHHHHHHHhhCC-CE-EEEechHHHHHHHHhcccccccHHHHHHHhcCCEE
Confidence 56699999999999999999999999999999999999985 78 99999999999999987 5678899999999
Q ss_pred EEEcCC-c-h-HHHHHHH
Q psy9196 154 IIVSPE-A-K-VDVLLKT 168 (362)
Q Consensus 154 IafS~e-p-~-aK~llkf 168 (362)
++|+++ | . +|.+.+|
T Consensus 81 liFt~~dp~~v~k~l~~~ 98 (175)
T cd05795 81 FIFTNGDPFEIRKILEEN 98 (175)
T ss_pred EEEECCCHHHHHHHHHHc
Confidence 999975 4 3 4444444
No 9
>PRK04019 rplP0 acidic ribosomal protein P0; Validated
Probab=99.49 E-value=9e-14 Score=137.05 Aligned_cols=90 Identities=16% Similarity=0.178 Sum_probs=80.8
Q ss_pred hHHHHHHHHHHHHHhcCCeEEEEecCCCcHHHHHHHHHHHHHcCCeeEEEechhHHHHHHhcCC---CCCCcCccccceE
Q psy9196 77 IFQNILAKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRATIEKALTNTK---YISIMPLFKVSEA 153 (362)
Q Consensus 77 py~~iLv~El~e~f~~Sk~I~V~~y~GLtVed~~~LR~~LRk~gi~~~KV~KNtL~r~ALe~T~---~e~L~plF~GpTA 153 (362)
..+..++++|++.|++++.++|++|.||++.++++||+.||.. +. |+|+|||||++||++++ ++.|.++|+|+++
T Consensus 6 e~K~~~v~el~~~l~~~~~v~iv~~~gl~~~ql~~lR~~lr~~-~~-~~v~KNtL~~~Al~~~~~~~~~~L~~~l~G~~a 83 (330)
T PRK04019 6 EWKKEEVEELKELIKSYPVVGIVDLEGIPARQLQEIRRKLRGK-AE-LKVSKNTLIKRALEEAGEEDLEKLEDYLEGQVA 83 (330)
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHHcC-CE-EEEEehHHHHHHHHhcCcccHHHHHhhccCCEE
Confidence 4577799999999999999999999999999999999999986 88 99999999999999999 8899999999999
Q ss_pred EEEcCC-c-h-HHHHHHH
Q psy9196 154 IIVSPE-A-K-VDVLLKT 168 (362)
Q Consensus 154 IafS~e-p-~-aK~llkf 168 (362)
|+|+++ | . .|.+.+|
T Consensus 84 lift~~dp~~v~k~l~~~ 101 (330)
T PRK04019 84 LIFTNMNPFKLYKLLEKS 101 (330)
T ss_pred EEEECCCHHHHHHHHHHc
Confidence 999975 4 3 4444443
No 10
>PTZ00135 60S acidic ribosomal protein P0; Provisional
Probab=99.38 E-value=1.6e-12 Score=127.56 Aligned_cols=89 Identities=15% Similarity=0.199 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCCCcHHHHHHHHHHHHHcCCeeEEEechhHHHHHHhcC-----CCCCCcCccccceE
Q psy9196 79 QNILAKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRATIEKALTNT-----KYISIMPLFKVSEA 153 (362)
Q Consensus 79 ~~iLv~El~e~f~~Sk~I~V~~y~GLtVed~~~LR~~LRk~gi~~~KV~KNtL~r~ALe~T-----~~e~L~plF~GpTA 153 (362)
+..++++|++.|++++.++|++|.||++.++++||+.||.. .. |+|.||||||+||+++ +++.|.++|+|+++
T Consensus 10 K~~~v~~l~e~l~~y~~v~vv~~~nv~s~ql~~iR~~LR~~-a~-~~vgKNTL~r~AL~~~~~~~~~l~~L~~~LkG~~g 87 (310)
T PTZ00135 10 KKAYFEKLYELLEKYKKILIVSVDNVGSKQMQDIRRSLRGK-AE-LLMGKNTLIRKALKQRLEELPELEKLLPHVKGNVG 87 (310)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHhcC-CE-EEEEehHHHHHHHhhCcccccChHHHHhhccCCEE
Confidence 67799999999999999999999999999999999999985 68 9999999999999987 47789999999999
Q ss_pred EEEcCC-c-h-HHHHHHHH
Q psy9196 154 IIVSPE-A-K-VDVLLKTL 169 (362)
Q Consensus 154 IafS~e-p-~-aK~llkf~ 169 (362)
++|+++ + . .+.+.+|.
T Consensus 88 liFTn~dp~ev~k~l~~~k 106 (310)
T PTZ00135 88 FVFTKDDLFEVKPVILENK 106 (310)
T ss_pred EEEECCCHHHHHHHHHHcC
Confidence 999965 4 3 44555554
No 11
>PTZ00240 60S ribosomal protein P0; Provisional
Probab=98.61 E-value=1.8e-07 Score=92.76 Aligned_cols=87 Identities=7% Similarity=0.129 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCCCcHHHHHHHHHHHHHcCCeeEEEechhHHHHHHhcCCC-------CCC-------
Q psy9196 79 QNILAKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRATIEKALTNTKY-------ISI------- 144 (362)
Q Consensus 79 ~~iLv~El~e~f~~Sk~I~V~~y~GLtVed~~~LR~~LRk~gi~~~KV~KNtL~r~ALe~T~~-------e~L------- 144 (362)
+..++++|++.|++.+.|+|+++.++...++.++|+.||... . +.+-||||||+||..+.. +.|
T Consensus 8 K~~~v~~l~~~l~~y~~v~Iv~~~nv~s~qlq~IR~~lrg~a-~-~~~GKNtlm~~AL~~~~~~~~~~~~~~ll~~~~~~ 85 (323)
T PTZ00240 8 KREYEERLVDCLTKYSCVLFVGMDNVRSQQVHDVRRALRGKA-E-FVMGKKTLQAKIVEKRAQAKKASAEAKLFNDQCEE 85 (323)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEecCCCcHHHHHHHHHhhCCc-E-EEEecHHHHHHHHhhccccccchhHHHHhhhhccc
Confidence 667999999999999999999999999999999999999544 7 899999999999997765 345
Q ss_pred cCccccceEEEEcCCc--hHHHHHH
Q psy9196 145 MPLFKVSEAIIVSPEA--KVDVLLK 167 (362)
Q Consensus 145 ~plF~GpTAIafS~ep--~aK~llk 167 (362)
.++++|+++++|++++ .++.+++
T Consensus 86 ~~~l~GnvgliFTn~~p~ev~~~l~ 110 (323)
T PTZ00240 86 KNLLSGNTGLIFTNNEVQEITSVLD 110 (323)
T ss_pred cccccCCEEEEEeCCCHHHHHHHHH
Confidence 3899999999999764 5665554
No 12
>KOG0816|consensus
Probab=97.01 E-value=0.0034 Score=59.21 Aligned_cols=80 Identities=14% Similarity=0.165 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEecCCCcHHHHHHHHHHHHHcCCeeEEEechhHHHHHHhcCCC-------CCCcCcccc
Q psy9196 78 FQNILAKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRATIEKALTNTKY-------ISIMPLFKV 150 (362)
Q Consensus 78 y~~iLv~El~e~f~~Sk~I~V~~y~GLtVed~~~LR~~LRk~gi~~~KV~KNtL~r~ALe~T~~-------e~L~plF~G 150 (362)
.++.|+++|++-++..+.++|++..+|.-.-+.++|.+++ |.. |-.-||.+|..||-.++- ..+..+++|
T Consensus 22 ~K~~i~~~ir~~vd~Y~~v~Vf~~~nMRn~~lk~iR~~~k--~sr-~f~GknKVm~vaLG~~~~dE~~~~l~klskll~G 98 (223)
T KOG0816|consen 22 KKEAIVEEIREAVDKYPYVFVFEVPNMRNTTLKEIRQDFK--NSR-FFFGKNKVMQVALGRSREDEYKENLYKLSKLLKG 98 (223)
T ss_pred HHHHHHHHHHHHHhhCCeEEEEEcCCcchHHHHHHHHHhh--ccc-eecchhhHHHHHhcCCchhhHHHHHHHhhhhccC
Confidence 4667999999999999999999999999999999999999 888 889999999999998873 346778999
Q ss_pred ceEEEEcCCc
Q psy9196 151 SEAIIVSPEA 160 (362)
Q Consensus 151 pTAIafS~ep 160 (362)
.+.++|.+.+
T Consensus 99 ~~GLlFTd~~ 108 (223)
T KOG0816|consen 99 SVGLLFTDMS 108 (223)
T ss_pred ceEEEecCCC
Confidence 9999999753
No 13
>KOG0815|consensus
Probab=96.61 E-value=0.0062 Score=58.21 Aligned_cols=79 Identities=9% Similarity=0.124 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHhcCCeEEEEecCCCcHHHHHHHHHHHHHcCCeeEEEechhHHHHHHhcCC-----CCCCcCccccceEE
Q psy9196 80 NILAKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRATIEKALTNTK-----YISIMPLFKVSEAI 154 (362)
Q Consensus 80 ~iLv~El~e~f~~Sk~I~V~~y~GLtVed~~~LR~~LRk~gi~~~KV~KNtL~r~ALe~T~-----~e~L~plF~GpTAI 154 (362)
...-..+++.|++..-++++.-......+|..+|++||-.- . +-.-||+++|+|+.+.. ++.++|++.|++.+
T Consensus 11 ~~y~~K~~~L~~~y~~~~~v~~dnv~s~ql~~ir~~lrg~a-~-vlmgkntm~rrair~~~~~~~~~~~llp~~~g~vgf 88 (245)
T KOG0815|consen 11 AVYFTKLRQLFEEYPKCFVVGADNVGSTQLQNIRKQLRGDA-V-VLMGKNTMMRRAIRGHLENNPALEKLLPVVKGNVGF 88 (245)
T ss_pred HHHHHHHHHHHHhcCceEEEeecchhhHHHHHHHHHhcCce-e-eeechhHHHHHHHHhccCCcHHHHhhccceeeceeE
Confidence 34556778899999999999999999999999999999644 4 68899999999998654 46799999999999
Q ss_pred EEcCCc
Q psy9196 155 IVSPEA 160 (362)
Q Consensus 155 afS~ep 160 (362)
+|.+++
T Consensus 89 vftk~~ 94 (245)
T KOG0815|consen 89 VFTKGD 94 (245)
T ss_pred EEEecc
Confidence 999875
No 14
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=70.06 E-value=6.9 Score=40.32 Aligned_cols=77 Identities=14% Similarity=0.251 Sum_probs=50.3
Q ss_pred CeEEEEecCCCcHHHHHHHHHHHHHcCCeeEEEechhHHHHHHhcCCCCCCcCccccceEEEEcCCc----hHHHHHHHH
Q psy9196 94 QMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRATIEKALTNTKYISIMPLFKVSEAIIVSPEA----KVDVLLKTL 169 (362)
Q Consensus 94 k~I~V~~y~GLtVed~~~LR~~LRk~gi~~~KV~KNtL~r~ALe~T~~e~L~plF~GpTAIafS~ep----~aK~llkf~ 169 (362)
..|+|+|+ |++. .+-+.|++.|+. +.|++|..- .+.+..+ .+.+|++|..| .....++++
T Consensus 193 ~~I~viD~-g~k~----ni~~~L~~~G~~-v~vvp~~~~--------~~~i~~~--~~dgIilSgGPg~p~~~~~~i~~i 256 (382)
T CHL00197 193 LKIIVIDF-GVKY----NILRRLKSFGCS-ITVVPATSP--------YQDILSY--QPDGILLSNGPGDPSAIHYGIKTV 256 (382)
T ss_pred CEEEEEEC-CcHH----HHHHHHHHCCCe-EEEEcCCCC--------HHHHhcc--CCCEEEEcCCCCChhHHHHHHHHH
Confidence 57999999 7774 377788889999 999998642 2222221 57789998654 233333444
Q ss_pred hhC--CCeEEEEEEEcCee
Q psy9196 170 KKT--PQLTLMATIVDNRL 186 (362)
Q Consensus 170 Kk~--pkL~LkGGiVEGkv 186 (362)
++. ..+.++|=|+.-++
T Consensus 257 ~~~~~~~~PilGIClGhQl 275 (382)
T CHL00197 257 KKLLKYNIPIFGICMGHQI 275 (382)
T ss_pred HHHHhCCCCEEEEcHHHHH
Confidence 332 35788998885443
No 15
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=68.34 E-value=22 Score=37.57 Aligned_cols=7 Identities=14% Similarity=0.159 Sum_probs=3.2
Q ss_pred HHHHHHH
Q psy9196 205 ALLVQTI 211 (362)
Q Consensus 205 AqLvg~L 211 (362)
+|+++++
T Consensus 257 ~Q~lSl~ 263 (460)
T PRK13108 257 NSFTSTF 263 (460)
T ss_pred HHHHHHH
Confidence 4444444
No 16
>COG1534 Predicted RNA-binding protein containing KH domain, possibly ribosomal protein [Translation, ribosomal structure and biogenesis]
Probab=51.94 E-value=75 Score=27.09 Aligned_cols=73 Identities=8% Similarity=0.069 Sum_probs=55.6
Q ss_pred HHHHHHHHhcCCeEEEEecCCCcHHHHHHHHHHHHHcC-CeeEEEechhH------HHHHHhcCCCCCCcCccccceEEE
Q psy9196 83 AKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVG-MTMLDRYGRAT------IEKALTNTKYISIMPLFKVSEAII 155 (362)
Q Consensus 83 v~El~e~f~~Sk~I~V~~y~GLtVed~~~LR~~LRk~g-i~~~KV~KNtL------~r~ALe~T~~e~L~plF~GpTAIa 155 (362)
.+.|+..-.+-+-++.+--+|||-.=+.++..+|-.++ |. ++|.+|.. +..-.+.++.+.+. ..|.++|+
T Consensus 7 ~~~Lrs~Ah~l~piv~IGk~Glte~vi~Ei~~aL~~reLIK-Vkvl~~~~edr~eia~~l~~~~~a~lVq--viG~~~vl 83 (97)
T COG1534 7 KRFLRSKAHHLKPIVQIGKNGLTEGVIKEIDRALEARELIK-VKVLQNAREDKKEIAEALAEETGAELVQ--VIGKTLVL 83 (97)
T ss_pred HHHHHHhhccCCceEEecCCccCHHHHHHHHHHHHhCCcEE-EEeeccchhhHHHHHHHHHHHhCCEEee--eeeeEEEE
Confidence 45566677788889999999999999999999999998 45 88898864 33333445544332 57999999
Q ss_pred EcC
Q psy9196 156 VSP 158 (362)
Q Consensus 156 fS~ 158 (362)
|=+
T Consensus 84 yr~ 86 (97)
T COG1534 84 YRE 86 (97)
T ss_pred Eec
Confidence 964
No 17
>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)
Probab=50.66 E-value=20 Score=37.43 Aligned_cols=76 Identities=8% Similarity=0.110 Sum_probs=49.8
Q ss_pred eEEEEecCCCcHHHHHHHHHHHHHcCCeeEEEechhHHHHHHhcCCCCCCcCccccceEEEEcCCc----hHHHHHHHHh
Q psy9196 95 MIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRATIEKALTNTKYISIMPLFKVSEAIIVSPEA----KVDVLLKTLK 170 (362)
Q Consensus 95 ~I~V~~y~GLtVed~~~LR~~LRk~gi~~~KV~KNtL~r~ALe~T~~e~L~plF~GpTAIafS~ep----~aK~llkf~K 170 (362)
-|+++++-. ...+=+.|++.|+. +.|++|..--. .+.. ..+.+|++|..| .+..+++++|
T Consensus 242 ~IvviD~G~-----K~nIlr~L~~~G~~-v~VvP~~~~~~--------ei~~--~~pDGIiLSnGPGDP~~~~~~ie~ik 305 (415)
T PLN02771 242 HVIAYDFGI-----KHNILRRLASYGCK-ITVVPSTWPAS--------EALK--MKPDGVLFSNGPGDPSAVPYAVETVK 305 (415)
T ss_pred EEEEECCCh-----HHHHHHHHHHcCCe-EEEECCCCCHH--------HHhh--cCCCEEEEcCCCCChhHhhHHHHHHH
Confidence 477777744 36677788899999 99999874211 1111 256778998654 4455555555
Q ss_pred hC-CCeEEEEEEEcCee
Q psy9196 171 KT-PQLTLMATIVDNRL 186 (362)
Q Consensus 171 k~-pkL~LkGGiVEGkv 186 (362)
+. .++.++|-|+..++
T Consensus 306 ~l~~~iPIlGICLGhQl 322 (415)
T PLN02771 306 ELLGKVPVFGICMGHQL 322 (415)
T ss_pred HHHhCCCEEEEcHHHHH
Confidence 43 46889999986654
No 18
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=50.26 E-value=45 Score=27.13 Aligned_cols=68 Identities=15% Similarity=0.193 Sum_probs=52.3
Q ss_pred hHHHHHHHHHHHHHhcCC---------eEEEEecCCCcH------HHHHHHHHHHHHcCCeeEEEec-hhHHHHHHhcCC
Q psy9196 77 IFQNILAKEILARFEESQ---------MIAIVHRSSMLA------EVNREVKVVFKRVGMTMLDRYG-RATIEKALTNTK 140 (362)
Q Consensus 77 py~~iLv~El~e~f~~Sk---------~I~V~~y~GLtV------ed~~~LR~~LRk~gi~~~KV~K-NtL~r~ALe~T~ 140 (362)
+--..+.+.|.+++.... -.+|++..+++. .-+.++++.|++.|+. +.++. +.-++..++.++
T Consensus 22 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iDssgi~~L~~~~~~~~~~g~~-~~l~~~~~~v~~~l~~~~ 100 (117)
T PF01740_consen 22 ANAEEFRDRIRKLIDEDPERIKKRQTIKNVILDMSGVSFIDSSGIQALVDIIKELRRRGVQ-LVLVGLNPDVRRILERSG 100 (117)
T ss_dssp HHHHHHHHHHHHHHCCSSS--HTSSSSSEEEEEETTESEESHHHHHHHHHHHHHHHHTTCE-EEEESHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhhcccccccccccceEEEEEEEeCCcCCHHHHHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHHHcC
Confidence 344557778888887774 789999999875 5567888999999999 55555 778888899888
Q ss_pred CCCCc
Q psy9196 141 YISIM 145 (362)
Q Consensus 141 ~e~L~ 145 (362)
+....
T Consensus 101 ~~~~~ 105 (117)
T PF01740_consen 101 LIDFI 105 (117)
T ss_dssp GHHHS
T ss_pred CChhc
Confidence 76544
No 19
>cd05797 Ribosomal_L10 Ribosomal protein L10 family, L10 subfamily; composed of bacterial 50S ribosomal protein and eukaryotic mitochondrial 39S ribosomal protein, L10. L10 occupies the L7/L12 stalk of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-in
Probab=49.65 E-value=22 Score=31.29 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHh
Q psy9196 213 SVATSLTSQLNHHSTTLVSYLDQHSG 238 (362)
Q Consensus 213 sPasqLvs~Lqa~~~~Lv~vLdq~~k 238 (362)
...++|+++|++|.++|+++|+++.+
T Consensus 131 ~l~a~l~~~l~~p~~~l~~~L~~~~~ 156 (157)
T cd05797 131 ELLAQLLGLLQAPATKLVRVLNAPAS 156 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 45579999999999999999999764
No 20
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=46.01 E-value=27 Score=32.99 Aligned_cols=78 Identities=12% Similarity=0.228 Sum_probs=52.3
Q ss_pred eEEEEecCCCcHHHHHHHHHHHHHcCCeeEEEechhHHHHHHhcCCCCCCcCccccceEEEEcCCc----hHHHHHHHHh
Q psy9196 95 MIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRATIEKALTNTKYISIMPLFKVSEAIIVSPEA----KVDVLLKTLK 170 (362)
Q Consensus 95 ~I~V~~y~GLtVed~~~LR~~LRk~gi~~~KV~KNtL~r~ALe~T~~e~L~plF~GpTAIafS~ep----~aK~llkf~K 170 (362)
.++|=+|.+.+ ..|=..|++.|.+ +.|++|..+... .++ ...|.+|++|+.| .+-.+++.++
T Consensus 4 IL~IDNyDSFt----yNLv~yl~~lg~~-v~V~rnd~~~~~----~~~-----~~~pd~iviSPGPG~P~d~G~~~~~i~ 69 (191)
T COG0512 4 ILLIDNYDSFT----YNLVQYLRELGAE-VTVVRNDDISLE----LIE-----ALKPDAIVISPGPGTPKDAGISLELIR 69 (191)
T ss_pred EEEEECccchH----HHHHHHHHHcCCc-eEEEECCccCHH----HHh-----hcCCCEEEEcCCCCChHHcchHHHHHH
Confidence 34455566665 4566778888999 999999833222 111 1346899999876 4555777777
Q ss_pred hC-CCeEEEEEEEcCee
Q psy9196 171 KT-PQLTLMATIVDNRL 186 (362)
Q Consensus 171 k~-pkL~LkGGiVEGkv 186 (362)
.+ .++.|+|-|+.-+.
T Consensus 70 ~~~~~~PiLGVCLGHQa 86 (191)
T COG0512 70 RFAGRIPILGVCLGHQA 86 (191)
T ss_pred HhcCCCCEEEECccHHH
Confidence 75 46899998886543
No 21
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=45.06 E-value=1.3e+02 Score=23.91 Aligned_cols=66 Identities=17% Similarity=0.195 Sum_probs=45.9
Q ss_pred HHHHHHHHHh-cCCeEEEEecCCCcH------HHHHHHHHHHHHcCCeeEEEec-hhHHHHHHhcCCCCCCcCcc
Q psy9196 82 LAKEILARFE-ESQMIAIVHRSSMLA------EVNREVKVVFKRVGMTMLDRYG-RATIEKALTNTKYISIMPLF 148 (362)
Q Consensus 82 Lv~El~e~f~-~Sk~I~V~~y~GLtV------ed~~~LR~~LRk~gi~~~KV~K-NtL~r~ALe~T~~e~L~plF 148 (362)
+.+.+.+.+. ...-.++++..+++. .-+..+++.++++|.. +.++. |.-++..++-+++..+.+++
T Consensus 30 ~~~~l~~~~~~~~~~~vvidls~v~~iDssgl~~L~~~~~~~~~~~~~-~~l~~~~~~~~~~l~~~~l~~~~~i~ 103 (108)
T TIGR00377 30 LREKVTPAAERTGPRPIVLDLEDLEFMDSSGLGVLLGRYKQVRRVGGQ-LVLVSVSPRVARLLDITGLLRIIPIY 103 (108)
T ss_pred HHHHHHHHHHhcCCCeEEEECCCCeEEccccHHHHHHHHHHHHhcCCE-EEEEeCCHHHHHHHHHhChhheeccC
Confidence 3344555555 244467777766654 4457788899999999 77776 88888888888877766554
No 22
>PRK00758 GMP synthase subunit A; Validated
Probab=41.95 E-value=40 Score=30.20 Aligned_cols=76 Identities=13% Similarity=0.197 Sum_probs=47.4
Q ss_pred eEEEEecCCCcHHHHHHHHHHHHHcCCeeEEEechhHHHHHHhcCCCCCCcCccccceEEEEcCCc---hHHHHHHHHhh
Q psy9196 95 MIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRATIEKALTNTKYISIMPLFKVSEAIIVSPEA---KVDVLLKTLKK 171 (362)
Q Consensus 95 ~I~V~~y~GLtVed~~~LR~~LRk~gi~~~KV~KNtL~r~ALe~T~~e~L~plF~GpTAIafS~ep---~aK~llkf~Kk 171 (362)
||+|+||.+-... .+.+.|++.|+. +.++++..- .+.+..+. .+|+++..| ....+.+++++
T Consensus 1 ~i~iid~~~~~~~---~i~~~l~~~g~~-~~~~~~~~~--------~~~l~~~~---dgivi~Gg~~~~~~~~~~~~l~~ 65 (184)
T PRK00758 1 KIVVVDNGGQYNH---LIHRTLRYLGVD-AKIIPNTTP--------VEEIKAFE---DGLILSGGPDIERAGNCPEYLKE 65 (184)
T ss_pred CEEEEECCCchHH---HHHHHHHHcCCc-EEEEECCCC--------HHHHhhcC---CEEEECCCCChhhccccHHHHHh
Confidence 5788887665443 367788999999 999997642 12222222 567776544 23344556653
Q ss_pred CCCeEEEEEEEcCee
Q psy9196 172 TPQLTLMATIVDNRL 186 (362)
Q Consensus 172 ~pkL~LkGGiVEGkv 186 (362)
..+.++|-|+.-++
T Consensus 66 -~~~PilGIC~G~Q~ 79 (184)
T PRK00758 66 -LDVPILGICLGHQL 79 (184)
T ss_pred -CCCCEEEEeHHHHH
Confidence 25788888875444
No 23
>TIGR00253 RNA_bind_YhbY putative RNA-binding protein, YhbY family. A combination of crystal structure, molecular modeling, and bioinformatic data together suggest that members of this family, including YhbY of E. coli, are RNA binding proteins.
Probab=41.57 E-value=1.3e+02 Score=25.36 Aligned_cols=74 Identities=8% Similarity=0.153 Sum_probs=54.2
Q ss_pred HHHHHHHHhcCCeEEEEecCCCcHHHHHHHHHHHHHcC-CeeEEEechhHH------HHHHhcCCCCCCcCccccceEEE
Q psy9196 83 AKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVG-MTMLDRYGRATI------EKALTNTKYISIMPLFKVSEAII 155 (362)
Q Consensus 83 v~El~e~f~~Sk~I~V~~y~GLtVed~~~LR~~LRk~g-i~~~KV~KNtL~------r~ALe~T~~e~L~plF~GpTAIa 155 (362)
.+.||.....=+-++.+--+|||-.-+.++...|.++. |. ++|.+|.-. ..-.+.++-+-+ -..|.++++
T Consensus 6 r~~Lr~~ah~l~p~v~IGK~Glt~~vi~ei~~aL~~hELIK-Vkvl~~~~~~~~e~a~~i~~~~~a~~V--q~iG~~~vl 82 (95)
T TIGR00253 6 KRHLRGKAHHLKPVVLVGKNGLTEGVIKEIEQALEHRELIK-VKVATEDREDKTLIAEALVKETGACNV--QVIGKTIVL 82 (95)
T ss_pred HHHHHHHhCCCCCeEEECCCCCCHHHHHHHHHHHHhCCcEE-EEecCCChhHHHHHHHHHHHHHCCEEE--EEEccEEEE
Confidence 46677778888889999999999999999999999998 45 888888532 222233332222 135999999
Q ss_pred EcCC
Q psy9196 156 VSPE 159 (362)
Q Consensus 156 fS~e 159 (362)
|=+.
T Consensus 83 YR~~ 86 (95)
T TIGR00253 83 YRPT 86 (95)
T ss_pred EecC
Confidence 9753
No 24
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=40.07 E-value=1.7e+02 Score=22.39 Aligned_cols=65 Identities=14% Similarity=0.098 Sum_probs=45.7
Q ss_pred HHHHHHHHHhcCCeEEEEecCCCcH------HHHHHHHHHHHHcCCeeEEEec-hhHHHHHHhcCCCCCCcCc
Q psy9196 82 LAKEILARFEESQMIAIVHRSSMLA------EVNREVKVVFKRVGMTMLDRYG-RATIEKALTNTKYISIMPL 147 (362)
Q Consensus 82 Lv~El~e~f~~Sk~I~V~~y~GLtV------ed~~~LR~~LRk~gi~~~KV~K-NtL~r~ALe~T~~e~L~pl 147 (362)
+.+.+...+....-.++++..+++. .-+..+++++++.|.. +.+.. |.-++..++..++....++
T Consensus 26 ~~~~~~~~~~~~~~~viid~~~v~~iDs~g~~~L~~l~~~~~~~g~~-v~i~~~~~~~~~~l~~~gl~~~~~i 97 (99)
T cd07043 26 LREALEELLAEGPRRLVLDLSGVTFIDSSGLGVLLGAYKRARAAGGR-LVLVNVSPAVRRVLELTGLDRLFPI 97 (99)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCEEcchhHHHHHHHHHHHHHcCCe-EEEEcCCHHHHHHHHHhCcceeeec
Confidence 4444555555543466788888765 5568889999999999 88775 7777777877776655443
No 25
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=38.78 E-value=36 Score=30.99 Aligned_cols=77 Identities=13% Similarity=0.217 Sum_probs=43.5
Q ss_pred EEEEecCCCcHHHHHHHHHHHHHcCCeeEEEechhHHHHHHhcCCCCCCcCccccceEEEEcCCc----hHHHHHHHHhh
Q psy9196 96 IAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRATIEKALTNTKYISIMPLFKVSEAIIVSPEA----KVDVLLKTLKK 171 (362)
Q Consensus 96 I~V~~y~GLtVed~~~LR~~LRk~gi~~~KV~KNtL~r~ALe~T~~e~L~plF~GpTAIafS~ep----~aK~llkf~Kk 171 (362)
++|=+|...|.. |-+.|++.|+. ++|++|.-+. .+.+.. ..+.+|++|+.| ......++++.
T Consensus 3 l~idn~Dsft~n----l~~~l~~~g~~-v~v~~~~~~~-------~~~~~~--~~~d~iils~GPg~p~~~~~~~~~~~~ 68 (187)
T PRK08007 3 LLIDNYDSFTWN----LYQYFCELGAD-VLVKRNDALT-------LADIDA--LKPQKIVISPGPCTPDEAGISLDVIRH 68 (187)
T ss_pred EEEECCCccHHH----HHHHHHHCCCc-EEEEeCCCCC-------HHHHHh--cCCCEEEEcCCCCChHHCCccHHHHHH
Confidence 444555556544 56667778999 9999996211 111111 256789999765 11112233332
Q ss_pred C-CCeEEEEEEEcCee
Q psy9196 172 T-PQLTLMATIVDNRL 186 (362)
Q Consensus 172 ~-pkL~LkGGiVEGkv 186 (362)
. ..+.++|-|+.-++
T Consensus 69 ~~~~~PiLGIClG~Q~ 84 (187)
T PRK08007 69 YAGRLPILGVCLGHQA 84 (187)
T ss_pred hcCCCCEEEECHHHHH
Confidence 2 35778888875433
No 26
>PLN02591 tryptophan synthase
Probab=37.82 E-value=3e+02 Score=26.77 Aligned_cols=90 Identities=12% Similarity=0.203 Sum_probs=54.2
Q ss_pred HHHHHHHhcC--CeEEEEecCCCcHHHHHHHHHHHHHcCCeeEEEe-chh----HHHHHHhcCCCCCCcCccccceEEEE
Q psy9196 84 KEILARFEES--QMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRY-GRA----TIEKALTNTKYISIMPLFKVSEAIIV 156 (362)
Q Consensus 84 ~El~e~f~~S--k~I~V~~y~GLtVed~~~LR~~LRk~gi~~~KV~-KNt----L~r~ALe~T~~e~L~plF~GpTAIaf 156 (362)
+..-+.+.++ ..++|. .|..++..+++..++++|+..+-.+ +|+ +-++|-...+|- ++++.+.+-=
T Consensus 96 ~~F~~~~~~aGv~Gviip---DLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFI----Y~Vs~~GvTG 168 (250)
T PLN02591 96 DKFMATIKEAGVHGLVVP---DLPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFV----YLVSSTGVTG 168 (250)
T ss_pred HHHHHHHHHcCCCEEEeC---CCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcE----EEeeCCCCcC
Confidence 3444445554 445555 5788999999999999999966666 555 444444444443 2222222221
Q ss_pred cC-C-c-hHHHHHHHHhhCCCeEEEEE
Q psy9196 157 SP-E-A-KVDVLLKTLKKTPQLTLMAT 180 (362)
Q Consensus 157 S~-e-p-~aK~llkf~Kk~pkL~LkGG 180 (362)
+. . + .+..+++.+|+...+.+.-|
T Consensus 169 ~~~~~~~~~~~~i~~vk~~~~~Pv~vG 195 (250)
T PLN02591 169 ARASVSGRVESLLQELKEVTDKPVAVG 195 (250)
T ss_pred CCcCCchhHHHHHHHHHhcCCCceEEe
Confidence 11 1 2 67788888888766655544
No 27
>PLN02335 anthranilate synthase
Probab=35.88 E-value=38 Score=31.88 Aligned_cols=80 Identities=14% Similarity=0.267 Sum_probs=48.4
Q ss_pred cCCeEEEEec-CCCcHHHHHHHHHHHHHcCCeeEEEechhHHHHHHhcCCCCCCcCccccceEEEEcCCc-h---HHHHH
Q psy9196 92 ESQMIAIVHR-SSMLAEVNREVKVVFKRVGMTMLDRYGRATIEKALTNTKYISIMPLFKVSEAIIVSPEA-K---VDVLL 166 (362)
Q Consensus 92 ~Sk~I~V~~y-~GLtVed~~~LR~~LRk~gi~~~KV~KNtL~r~ALe~T~~e~L~plF~GpTAIafS~ep-~---aK~ll 166 (362)
..+.|+|+|+ .+.+. .|.+.|++.|+. +.|+++..+. .+.+. ...+.+|+++..| . ....+
T Consensus 17 ~~~~ilviD~~dsft~----~i~~~L~~~g~~-~~v~~~~~~~-------~~~~~--~~~~d~iVisgGPg~p~d~~~~~ 82 (222)
T PLN02335 17 QNGPIIVIDNYDSFTY----NLCQYMGELGCH-FEVYRNDELT-------VEELK--RKNPRGVLISPGPGTPQDSGISL 82 (222)
T ss_pred ccCcEEEEECCCCHHH----HHHHHHHHCCCc-EEEEECCCCC-------HHHHH--hcCCCEEEEcCCCCChhhccchH
Confidence 4556777775 55654 477788888999 9999985221 11111 1245678998766 1 22234
Q ss_pred HHHhhC-CCeEEEEEEEcCe
Q psy9196 167 KTLKKT-PQLTLMATIVDNR 185 (362)
Q Consensus 167 kf~Kk~-pkL~LkGGiVEGk 185 (362)
+.++.. ..+.++|-|+.-+
T Consensus 83 ~~~~~~~~~~PiLGIClG~Q 102 (222)
T PLN02335 83 QTVLELGPLVPLFGVCMGLQ 102 (222)
T ss_pred HHHHHhCCCCCEEEecHHHH
Confidence 555544 3578888887543
No 28
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=35.77 E-value=27 Score=31.59 Aligned_cols=64 Identities=11% Similarity=0.237 Sum_probs=38.0
Q ss_pred HHHHHHHHcCCeeEEEechhHHHHHHhcCCCCCCcCccccceEEEEcCCc-------hHHHHHHHHhhCCCeEEEEEEEc
Q psy9196 111 EVKVVFKRVGMTMLDRYGRATIEKALTNTKYISIMPLFKVSEAIIVSPEA-------KVDVLLKTLKKTPQLTLMATIVD 183 (362)
Q Consensus 111 ~LR~~LRk~gi~~~KV~KNtL~r~ALe~T~~e~L~plF~GpTAIafS~ep-------~aK~llkf~Kk~pkL~LkGGiVE 183 (362)
.|...|++.|.+ +.|++|.-+.. +.+..+ .+.+|++|..| ....+++.++ ..+.++|-|+.
T Consensus 14 nl~~~l~~~~~~-~~v~~~~~~~~-------~~~~~~--~~~~iilsgGP~~~~~~~~~~~~i~~~~--~~~PiLGIC~G 81 (191)
T PRK06774 14 NLYQYFCELGTE-VMVKRNDELQL-------TDIEQL--APSHLVISPGPCTPNEAGISLAVIRHFA--DKLPILGVCLG 81 (191)
T ss_pred HHHHHHHHCCCc-EEEEeCCCCCH-------HHHHhc--CCCeEEEcCCCCChHhCCCchHHHHHhc--CCCCEEEECHH
Confidence 355666678999 99999973211 112111 55679998765 1334444432 25788888875
Q ss_pred Cee
Q psy9196 184 NRL 186 (362)
Q Consensus 184 Gkv 186 (362)
-++
T Consensus 82 ~Ql 84 (191)
T PRK06774 82 HQA 84 (191)
T ss_pred HHH
Confidence 433
No 29
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=34.82 E-value=1.6e+02 Score=24.25 Aligned_cols=48 Identities=13% Similarity=0.209 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEecCCCcHHHHHHHHHHHHHcCCeeEEEe
Q psy9196 78 FQNILAKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRY 127 (362)
Q Consensus 78 y~~iLv~El~e~f~~Sk~I~V~~y~GLtVed~~~LR~~LRk~gi~~~KV~ 127 (362)
+..++.+.++..+..-.. +|++...+...+...++..++++|.. +.++
T Consensus 55 ~~~~~~~~~~~~l~~g~~-~vvd~~~~~~~~r~~~~~~~~~~~~~-~~~v 102 (143)
T PF13671_consen 55 AYQILNAAIRKALRNGNS-VVVDNTNLSREERARLRELARKHGYP-VRVV 102 (143)
T ss_dssp HHHHHHHHHHHHHHTT-E-EEEESS--SHHHHHHHHHHHHHCTEE-EEEE
T ss_pred HHHHHHHHHHHHHHcCCC-ceeccCcCCHHHHHHHHHHHHHcCCe-EEEE
Confidence 444566777777766665 56688889999999999999999977 5544
No 30
>PF11909 NdhN: NADH-quinone oxidoreductase cyanobacterial subunit N; InterPro: IPR020874 NAD(P)H-quinone oxidoreductase (NDH-1) shuttles electrons from an unknown electron donor, via FMN and iron-sulphur (Fe-S) centres, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. It couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration. NDH-1 can be composed of about 15 different subunits, although different subcomplexes with different compositions have been identified which probably have different functions. This entry represents subunit N. ; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0055114 oxidation-reduction process, 0016020 membrane
Probab=34.61 E-value=20 Score=32.80 Aligned_cols=111 Identities=18% Similarity=0.166 Sum_probs=61.8
Q ss_pred HHHHHhcCCeEEEEecCCCcHHHHHHHHHHHHHcCCeeEEEec-hhHHHHHHhcCCCCCCcCccccceEEE----EcC--
Q psy9196 86 ILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYG-RATIEKALTNTKYISIMPLFKVSEAII----VSP-- 158 (362)
Q Consensus 86 l~e~f~~Sk~I~V~~y~GLtVed~~~LR~~LRk~gi~~~KV~K-NtL~r~ALe~T~~e~L~plF~GpTAIa----fS~-- 158 (362)
....++.+..++|+ ..+-.---..++++||.+|-. ....- .-|=..+.==|+...+.|=--|+..+. +++
T Consensus 10 f~rdlEk~gaLavy--~PlEGG~EgRy~RRLRa~GY~-t~~~SArGLGD~~ayLt~~HGVRPpHLGk~~ig~~aavG~v~ 86 (154)
T PF11909_consen 10 FIRDLEKSGALAVY--APLEGGYEGRYLRRLRAAGYR-TLIISARGLGDPEAYLTKVHGVRPPHLGKQSIGRGAAVGEVY 86 (154)
T ss_pred HHHHHHHcCceEEE--cCCcCchhHHHHHHHHhcCce-EEEecccCCCCHHHHHhccCCCCCCCCCccccccccccceeE
Confidence 33445677766664 344444457888999999966 33222 112222222345566666555555541 111
Q ss_pred --CchHHHHH-HHHhhCCCeEEEEEEEcCeecCHHHHHHhcC-CCHH
Q psy9196 159 --EAKVDVLL-KTLKKTPQLTLMATIVDNRLLSKTETEMYAT-TNLA 201 (362)
Q Consensus 159 --ep~aK~ll-kf~Kk~pkL~LkGGiVEGkvLs~~eI~~LAk-PSlE 201 (362)
-|.+---+ .+..+.+-++| =++||++||.+|+..|+. |.+|
T Consensus 87 ~~pP~~~y~Le~Lp~~~KglvL--WiiEG~vLS~~El~~L~~Lp~~e 131 (154)
T PF11909_consen 87 YVPPIVNYQLENLPPKSKGLVL--WIIEGQVLSRQELEYLCNLPQRE 131 (154)
T ss_pred EeCchhhhhHhhcCCCCCcEEE--EEEeccccCHHHHHHHHhccccC
Confidence 12222222 22333333433 479999999999999999 8765
No 31
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit. This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.
Probab=34.41 E-value=55 Score=33.47 Aligned_cols=77 Identities=12% Similarity=0.206 Sum_probs=47.5
Q ss_pred CeEEEEecCCCcHHHHHHHHHHHHHcCCeeEEEechhHHHHHHhcCCCCCCcCccccceEEEEcCCc----hHHHHHHHH
Q psy9196 94 QMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRATIEKALTNTKYISIMPLFKVSEAIIVSPEA----KVDVLLKTL 169 (362)
Q Consensus 94 k~I~V~~y~GLtVed~~~LR~~LRk~gi~~~KV~KNtL~r~ALe~T~~e~L~plF~GpTAIafS~ep----~aK~llkf~ 169 (362)
..|+|+|| |++. .+-+.|++.|+. +.|+++.. .++.+..+ .+.+|++|..| .....++++
T Consensus 174 ~~i~viD~-G~k~----ni~~~L~~~G~~-v~vvp~~~--------~~~~i~~~--~pDGIiLSgGPgdp~~~~~~i~~i 237 (358)
T TIGR01368 174 KRVVVIDF-GVKQ----NILRRLVKRGCE-VTVVPYDT--------DAEEIKKY--NPDGIFLSNGPGDPAAVEPAIETI 237 (358)
T ss_pred cEEEEEeC-CcHH----HHHHHHHHCCCE-EEEEcCCC--------CHHHHHhh--CCCEEEECCCCCCHHHHHHHHHHH
Confidence 37999999 7663 466788889999 99999763 12222222 34778887543 222222322
Q ss_pred hhC-CCeEEEEEEEcCee
Q psy9196 170 KKT-PQLTLMATIVDNRL 186 (362)
Q Consensus 170 Kk~-pkL~LkGGiVEGkv 186 (362)
+.. ..+.++|=|+.-++
T Consensus 238 ~~~~~~~PILGIClG~Ql 255 (358)
T TIGR01368 238 RKLLEKIPIFGICLGHQL 255 (358)
T ss_pred HHHHcCCCEEEECHHHHH
Confidence 221 26789998886544
No 32
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=33.37 E-value=57 Score=33.37 Aligned_cols=77 Identities=10% Similarity=0.242 Sum_probs=47.8
Q ss_pred CeEEEEecCCCcHHHHHHHHHHHHHcCCeeEEEechhHHHHHHhcCCCCCCcCccccceEEEEcCCc----hHHHHHHHH
Q psy9196 94 QMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRATIEKALTNTKYISIMPLFKVSEAIIVSPEA----KVDVLLKTL 169 (362)
Q Consensus 94 k~I~V~~y~GLtVed~~~LR~~LRk~gi~~~KV~KNtL~r~ALe~T~~e~L~plF~GpTAIafS~ep----~aK~llkf~ 169 (362)
..|+|+|| |++ ..+-+.|++.|+. +.|+++..--. .+..+ .+.+|+++..| .....++++
T Consensus 178 ~~I~viD~-G~k----~nivr~L~~~G~~-v~vvp~~~~~~--------~i~~~--~~DGIvLSgGPgdp~~~~~~~~~i 241 (360)
T PRK12564 178 YKVVAIDF-GVK----RNILRELAERGCR-VTVVPATTTAE--------EILAL--NPDGVFLSNGPGDPAALDYAIEMI 241 (360)
T ss_pred CEEEEEeC-CcH----HHHHHHHHHCCCE-EEEEeCCCCHH--------HHHhc--CCCEEEEeCCCCChHHHHHHHHHH
Confidence 47999998 654 3466788889999 99999874211 12111 46678887543 223333444
Q ss_pred hhC--CCeEEEEEEEcCee
Q psy9196 170 KKT--PQLTLMATIVDNRL 186 (362)
Q Consensus 170 Kk~--pkL~LkGGiVEGkv 186 (362)
++. ..+.++|-|+.-++
T Consensus 242 ~~~~~~~~PilGIClG~Ql 260 (360)
T PRK12564 242 RELLEKKIPIFGICLGHQL 260 (360)
T ss_pred HHHHHcCCeEEEECHHHHH
Confidence 332 25789998885443
No 33
>PRK00099 rplJ 50S ribosomal protein L10; Reviewed
Probab=32.71 E-value=59 Score=29.22 Aligned_cols=27 Identities=11% Similarity=0.156 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy9196 201 ATQQALLVQTISSVATSLTSQLNHHST 227 (362)
Q Consensus 201 EeL~AqLvg~LqsPasqLvs~Lqa~~~ 227 (362)
.....+|+++|++|.++|+++|++...
T Consensus 142 ~~p~~~l~~~L~~~~~~l~~~L~~~~~ 168 (172)
T PRK00099 142 QAPATKLAGVLNAPPSKLARVLKALAE 168 (172)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 333468888888888888888887654
No 34
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=32.66 E-value=1.1e+02 Score=30.03 Aligned_cols=56 Identities=9% Similarity=0.186 Sum_probs=44.0
Q ss_pred CCCChhhhhhhHHHHHHHhhhcccccchHHHHHHHHHHHHHhcCCeEEE--EecCCCcHHHHHHHHHHH---HHcCCe
Q psy9196 50 LLPSHEKCQKARARQWLMERKGLNEENIFQNILAKEILARFEESQMIAI--VHRSSMLAEVNREVKVVF---KRVGMT 122 (362)
Q Consensus 50 ~~p~~e~C~~~~~~~~~e~~e~~~e~npy~~iLv~El~e~f~~Sk~I~V--~~y~GLtVed~~~LR~~L---Rk~gi~ 122 (362)
++-.+|+|+|+.... .+++|.+.+.++.+++| +-+..+|-++..-||.|| ++.++-
T Consensus 69 avGvHPr~iP~e~~~-----------------~l~~L~~~l~~e~VvAiGEiGLe~~t~~E~evf~~QL~LA~e~dvP 129 (254)
T COG1099 69 AVGVHPRAIPPELEE-----------------VLEELEELLSNEDVVAIGEIGLEEATDEEKEVFREQLELARELDVP 129 (254)
T ss_pred EeccCCCCCCchHHH-----------------HHHHHHhhcccCCeeEeeecccccCCHHHHHHHHHHHHHHHHcCCc
Confidence 556668888865333 77889999998888887 457888999999999998 566776
No 35
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=30.29 E-value=2.9e+02 Score=22.14 Aligned_cols=61 Identities=11% Similarity=0.089 Sum_probs=43.3
Q ss_pred HHHHHHHHHh-cCCeEEEEecCCCcHHH------HHHHHHHHHHcCCeeEEEec-hhHHHHHHhcCCCCC
Q psy9196 82 LAKEILARFE-ESQMIAIVHRSSMLAEV------NREVKVVFKRVGMTMLDRYG-RATIEKALTNTKYIS 143 (362)
Q Consensus 82 Lv~El~e~f~-~Sk~I~V~~y~GLtVed------~~~LR~~LRk~gi~~~KV~K-NtL~r~ALe~T~~e~ 143 (362)
+.+++.+.+. ...-.+|+|+.+++.=| +..+.++++..|+. +.++. +.=++..|+.+++..
T Consensus 28 ~~~~l~~~~~~~~~~~vvlDls~v~~iDssg~~~l~~~~~~~~~~g~~-l~l~g~~~~v~~~l~~~gl~~ 96 (109)
T cd07041 28 LQERLLEAISRRRARGVIIDLTGVPVIDSAVARHLLRLARALRLLGAR-TILTGIRPEVAQTLVELGIDL 96 (109)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCchhcHHHHHHHHHHHHHHHHcCCe-EEEEeCCHHHHHHHHHhCCCh
Confidence 3444445454 33447999999988644 45666888999999 77765 777888888888754
No 36
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=30.28 E-value=1.6e+02 Score=31.30 Aligned_cols=6 Identities=50% Similarity=0.523 Sum_probs=2.6
Q ss_pred HHHHHH
Q psy9196 216 TSLTSQ 221 (362)
Q Consensus 216 sqLvs~ 221 (362)
+|++++
T Consensus 257 ~Q~lSl 262 (460)
T PRK13108 257 NSFTST 262 (460)
T ss_pred HHHHHH
Confidence 344443
No 37
>PLN02889 oxo-acid-lyase/anthranilate synthase
Probab=29.52 E-value=69 Score=36.91 Aligned_cols=81 Identities=12% Similarity=0.197 Sum_probs=51.3
Q ss_pred CCeEEEEecCCCcHHHHHHHHHHHHHc-CCeeEEEechhHHHHHHhcCCCCCCcCc---cccceEEEEcCCc-------h
Q psy9196 93 SQMIAIVHRSSMLAEVNREVKVVFKRV-GMTMLDRYGRATIEKALTNTKYISIMPL---FKVSEAIIVSPEA-------K 161 (362)
Q Consensus 93 Sk~I~V~~y~GLtVed~~~LR~~LRk~-gi~~~KV~KNtL~r~ALe~T~~e~L~pl---F~GpTAIafS~ep-------~ 161 (362)
-+.++|=+|.+.|.+ |-+.|++. |+. ..|++|.-+ .++.+..+ +..+-+||+|+.| .
T Consensus 82 ~~iLlIDnyDSfTyN----L~~~L~~~~g~~-~~Vv~nd~~-------~~~~~~~~~~~~~~~d~IVlSPGPG~P~~~~d 149 (918)
T PLN02889 82 VRTLLIDNYDSYTYN----IYQELSIVNGVP-PVVVRNDEW-------TWEEVYHYLYEEKAFDNIVISPGPGSPTCPAD 149 (918)
T ss_pred ceEEEEeCCCchHHH----HHHHHHHhcCCC-EEEEeCCCC-------CHHHHHhhhhcccCCCEEEECCCCCCccchHH
Confidence 367788888888876 44455555 889 999999832 22222221 2356789999765 1
Q ss_pred HHHHHHHHhhCCCeEEEEEEEcCe
Q psy9196 162 VDVLLKTLKKTPQLTLMATIVDNR 185 (362)
Q Consensus 162 aK~llkf~Kk~pkL~LkGGiVEGk 185 (362)
+...+++++....+.|+|-|+.-+
T Consensus 150 ~Gi~~~~i~~~~~iPILGICLGhQ 173 (918)
T PLN02889 150 IGICLRLLLECRDIPILGVCLGHQ 173 (918)
T ss_pred HHHHHHHHHHhCCCcEEEEcHHHH
Confidence 333456666555578888776533
No 38
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed
Probab=29.50 E-value=60 Score=33.16 Aligned_cols=78 Identities=13% Similarity=0.210 Sum_probs=46.4
Q ss_pred CCeEEEEecCCCcHHHHHHHHHHHHHcCCeeEEEechhHHHHHHhcCCCCCCcCccccceEEEEcCCc----hHHHHHHH
Q psy9196 93 SQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRATIEKALTNTKYISIMPLFKVSEAIIVSPEA----KVDVLLKT 168 (362)
Q Consensus 93 Sk~I~V~~y~GLtVed~~~LR~~LRk~gi~~~KV~KNtL~r~ALe~T~~e~L~plF~GpTAIafS~ep----~aK~llkf 168 (362)
.+.|+|+|| |++ ..+-+.|++.|+. +.|+++..- .+.+.. ..+.+|+++..| .....+++
T Consensus 167 ~~~V~viD~-G~k----~ni~~~L~~~G~~-v~vvp~~~~--------~~~i~~--~~~DGIiLsgGPgdp~~~~~~~~~ 230 (354)
T PRK12838 167 GKHVALIDF-GYK----KSILRSLSKRGCK-VTVLPYDTS--------LEEIKN--LNPDGIVLSNGPGDPKELQPYLPE 230 (354)
T ss_pred CCEEEEECC-CHH----HHHHHHHHHCCCe-EEEEECCCC--------HHHHhh--cCCCEEEEcCCCCChHHhHHHHHH
Confidence 467888898 543 5667788889999 999997631 111211 246678888543 22222333
Q ss_pred HhhC-CCeEEEEEEEcCee
Q psy9196 169 LKKT-PQLTLMATIVDNRL 186 (362)
Q Consensus 169 ~Kk~-pkL~LkGGiVEGkv 186 (362)
++.. ..+.++|-|+.-++
T Consensus 231 i~~~~~~~PvlGIClG~Ql 249 (354)
T PRK12838 231 IKKLISSYPILGICLGHQL 249 (354)
T ss_pred HHHHhcCCCEEEECHHHHH
Confidence 3321 22778888875443
No 39
>cd07042 STAS_SulP_like_sulfate_transporter Sulphate Transporter and Anti-Sigma factor antagonist domain of SulP-like sulfate transporters, plays a role in the function and regulation of the transport activity, proposed general NTP binding function. The SulP family is a large and diverse family of anion transporters, with members from eubacteria, plants, fungi, and mammals. They contain 10 to 14 transmembrane helices which form the catalytic core of the protein and a C-terminal extension, the STAS (Sulphate Transporter and AntiSigma factor antagonist) domain which plays a role in the function and regulation of the transport activity. The STAS domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function.
Probab=28.06 E-value=2.9e+02 Score=21.41 Aligned_cols=65 Identities=14% Similarity=0.194 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhcC--CeEEEEecCCCcHHHH------HHHHHHHHHcCCeeEEEec-hhHHHHHHhcCCCCCCcC
Q psy9196 81 ILAKEILARFEES--QMIAIVHRSSMLAEVN------REVKVVFKRVGMTMLDRYG-RATIEKALTNTKYISIMP 146 (362)
Q Consensus 81 iLv~El~e~f~~S--k~I~V~~y~GLtVed~------~~LR~~LRk~gi~~~KV~K-NtL~r~ALe~T~~e~L~p 146 (362)
.+.+++.+.+... .-.+|++..+++.=|- ..+.+++++.|+. +.+.. +.-++..+..+++..+.+
T Consensus 26 ~l~~~~~~~~~~~~~~~~lilD~~~v~~iDss~~~~L~~~~~~~~~~~~~-~~l~~~~~~~~~~l~~~g~~~~~~ 99 (107)
T cd07042 26 YFKDRLLRLVDEDPPLKVVILDLSAVNFIDSTAAEALEELVKDLRKRGVE-LYLAGLNPQVRELLERAGLLDEIG 99 (107)
T ss_pred HHHHHHHHHhccCCCceEEEEECCCCchhhHHHHHHHHHHHHHHHHCCCE-EEEecCCHHHHHHHHHcCcHHHhC
Confidence 4566777777665 3577899999876554 7788899999999 66663 567777777777655443
No 40
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=27.81 E-value=52 Score=35.33 Aligned_cols=75 Identities=15% Similarity=0.211 Sum_probs=42.3
Q ss_pred CeEEEEecCCCcHHHHHHHHHHHHHcCCeeEEEechhHHHHHHhcCCCCC-CcCcc-ccceEEEEcCCc-h------HHH
Q psy9196 94 QMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRATIEKALTNTKYIS-IMPLF-KVSEAIIVSPEA-K------VDV 164 (362)
Q Consensus 94 k~I~V~~y~GLtVed~~~LR~~LRk~gi~~~KV~KNtL~r~ALe~T~~e~-L~plF-~GpTAIafS~ep-~------aK~ 164 (362)
+.++|=+|...| ..|-+.||+.|.+ +.||+|.+- +.. +.++. ..+.+|++|+.| . ...
T Consensus 3 ~iLiIDn~dsft----~nl~~~lr~~g~~-v~V~~~~~~--------~~~~~~~l~~~~~~~IIlSpGPg~p~d~~~~~~ 69 (531)
T PRK09522 3 DILLLDNIDSFT----YNLADQLRSNGHN-VVIYRNHIP--------AQTLIERLATMSNPVLMLSPGPGVPSEAGCMPE 69 (531)
T ss_pred eEEEEeCCChHH----HHHHHHHHHCCCC-EEEEECCCC--------CccCHHHHHhcCcCEEEEcCCCCChhhCCCCHH
Confidence 334444444455 4477888889999 999998731 111 11111 236689999876 2 234
Q ss_pred HHHHHhhCCCeEEEEEEEc
Q psy9196 165 LLKTLKKTPQLTLMATIVD 183 (362)
Q Consensus 165 llkf~Kk~pkL~LkGGiVE 183 (362)
+++.++ ..+.++|=|+.
T Consensus 70 i~~~~~--~~iPILGIClG 86 (531)
T PRK09522 70 LLTRLR--GKLPIIGICLG 86 (531)
T ss_pred HHHHHh--cCCCEEEEcHH
Confidence 444322 24556665553
No 41
>cd02407 PTH2_family Peptidyl-tRNA hydrolase, type 2 (PTH2)_like . Peptidyl-tRNA hydrolase activity releases tRNA from the premature translation termination product peptidyl-tRNA. Two structurally different enzymes have been reported to encode such activity, Pth present in bacteria and eukaryotes and Pth2 present in archaea and eukaryotes.
Probab=27.61 E-value=4e+02 Score=22.91 Aligned_cols=62 Identities=16% Similarity=0.130 Sum_probs=46.4
Q ss_pred HHHHHHhcCCeEEEEecCCCcHHHHHHHHHHHHHcCCeeEEEechhHHHHHHhcCCCCCCcCccccceEEEEcCCc
Q psy9196 85 EILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRATIEKALTNTKYISIMPLFKVSEAIIVSPEA 160 (362)
Q Consensus 85 El~e~f~~Sk~I~V~~y~GLtVed~~~LR~~LRk~gi~~~KV~KNtL~r~ALe~T~~e~L~plF~GpTAIafS~ep 160 (362)
.++.|.....--+|+.-. +.+++..|..++++.|+. +.++. |.++..+.| --+|+|++++.|
T Consensus 40 ~~~~W~~~g~~KvVl~v~--~~~~l~~l~~~a~~~gl~-~~~v~---------DAG~Tqi~~--gt~TvlaigP~~ 101 (115)
T cd02407 40 LLRAWELEGQKKVVLKVP--SEEELLELAKKAKELGLP-HSLIQ---------DAGRTQIPP--GTPTVLAIGPAP 101 (115)
T ss_pred HHHHHHhCCCcEEEEECC--CHHHHHHHHHHHHHcCCC-eEEEE---------ECCCcccCC--CCceEEEECCCC
Confidence 567888887777777665 458999999999999999 77765 556555543 236899998755
No 42
>PRK10343 RNA-binding protein YhbY; Provisional
Probab=27.54 E-value=2.7e+02 Score=23.57 Aligned_cols=74 Identities=7% Similarity=0.083 Sum_probs=53.9
Q ss_pred HHHHHHHHhcCCeEEEEecCCCcHHHHHHHHHHHHHcC-CeeEEEechhHH------HHHHhcCCCCCCcCccccceEEE
Q psy9196 83 AKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVG-MTMLDRYGRATI------EKALTNTKYISIMPLFKVSEAII 155 (362)
Q Consensus 83 v~El~e~f~~Sk~I~V~~y~GLtVed~~~LR~~LRk~g-i~~~KV~KNtL~------r~ALe~T~~e~L~plF~GpTAIa 155 (362)
.+.||..-..=+-++.+--+|||-.-+.++...|..+. |. ++|.+|.-. ..-.+.++-+-+ -..|.++++
T Consensus 8 r~~LR~~ah~l~Pvv~IGk~Glt~~vi~ei~~aL~~hELIK-vkv~~~~~~~~~e~~~~i~~~~~ae~V--q~IG~~~vl 84 (97)
T PRK10343 8 KQHLKGLAHPLKPVVLLGSNGLTEGVLAEIEQALEHHELIK-VKIATEDRETKTLIVEAIVRETGACNV--QVIGKTLVL 84 (97)
T ss_pred HHHHHHhcCCCCCeEEECCCCCCHHHHHHHHHHHHHCCcEE-EEecCCChhHHHHHHHHHHHHHCCEEE--eeeCcEEEE
Confidence 46677777888889999999999999999999999998 56 888887632 222223322211 236999999
Q ss_pred EcCC
Q psy9196 156 VSPE 159 (362)
Q Consensus 156 fS~e 159 (362)
|=+.
T Consensus 85 YR~~ 88 (97)
T PRK10343 85 YRPT 88 (97)
T ss_pred EecC
Confidence 9753
No 43
>CHL00101 trpG anthranilate synthase component 2
Probab=26.85 E-value=1.1e+02 Score=27.79 Aligned_cols=77 Identities=13% Similarity=0.158 Sum_probs=43.8
Q ss_pred eEEEEecCCCcHHHHHHHHHHHHHcCCeeEEEechhHHHHHHhcCCCCCCcCccccceEEEEcCCc-------hHHHHHH
Q psy9196 95 MIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRATIEKALTNTKYISIMPLFKVSEAIIVSPEA-------KVDVLLK 167 (362)
Q Consensus 95 ~I~V~~y~GLtVed~~~LR~~LRk~gi~~~KV~KNtL~r~ALe~T~~e~L~plF~GpTAIafS~ep-------~aK~llk 167 (362)
||+|+|+-.-=. ..|.+.|++.|+. +.|+++..... +.+. ...+.+|+++..| ....+++
T Consensus 1 ~iliid~~dsft---~~l~~~l~~~g~~-~~v~~~~~~~~-------~~~~--~~~~dgiiisgGpg~~~~~~~~~~i~~ 67 (190)
T CHL00101 1 MILIIDNYDSFT---YNLVQSLGELNSD-VLVCRNDEIDL-------SKIK--NLNIRHIIISPGPGHPRDSGISLDVIS 67 (190)
T ss_pred CEEEEECCCchH---HHHHHHHHhcCCC-EEEEECCCCCH-------HHHh--hCCCCEEEECCCCCChHHCcchHHHHH
Confidence 355555543221 3477888999999 99999863211 0111 1256778888655 1233444
Q ss_pred HHhhCCCeEEEEEEEcCee
Q psy9196 168 TLKKTPQLTLMATIVDNRL 186 (362)
Q Consensus 168 f~Kk~pkL~LkGGiVEGkv 186 (362)
.++ ..+.++|-|+.-++
T Consensus 68 ~~~--~~~PiLGIClG~Ql 84 (190)
T CHL00101 68 SYA--PYIPILGVCLGHQS 84 (190)
T ss_pred Hhc--CCCcEEEEchhHHH
Confidence 332 35678888875443
No 44
>PF08248 Tryp_FSAP: Tryptophyllin-3 skin active peptide; InterPro: IPR013266 PdT-3 or Tryptophyllin-3 peptide is a subfamily of the family Tryptophyllin and of the superfamily FSAP (Frog Skin Active Peptide). Originally identified in skin extracts of Neotropical leaf frogs, Phyllomedusa sp. This subfamily has an average length of 13 amino acids. The pharmacological activity of the tryptophyllins remains to be established [] but it seems that these peptides possess an action on liver protein synthesis and body weight []. It is thought to possesses insulin-releasing activity [].
Probab=26.03 E-value=35 Score=18.76 Aligned_cols=8 Identities=50% Similarity=0.949 Sum_probs=6.4
Q ss_pred CCCCCCCC
Q psy9196 40 KPKFPPNP 47 (362)
Q Consensus 40 eP~yppp~ 47 (362)
+|+||||-
T Consensus 2 kpfw~ppi 9 (12)
T PF08248_consen 2 KPFWPPPI 9 (12)
T ss_pred CccCCCCc
Confidence 68898886
No 45
>TIGR00283 arch_pth2 peptidyl-tRNA hydrolase. This model describes an archaeal/eukaryotic form of peptidyl-tRNA hydrolase. Most bacterial forms are described by TIGR00447.
Probab=25.94 E-value=4.3e+02 Score=22.79 Aligned_cols=62 Identities=15% Similarity=0.107 Sum_probs=42.4
Q ss_pred HHHHHHhcCCeEEEEecCCCcHHHHHHHHHHHHHcCCeeEEEechhHHHHHHhcCCCCCCcCccccceEEEEcCCc
Q psy9196 85 EILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRATIEKALTNTKYISIMPLFKVSEAIIVSPEA 160 (362)
Q Consensus 85 El~e~f~~Sk~I~V~~y~GLtVed~~~LR~~LRk~gi~~~KV~KNtL~r~ALe~T~~e~L~plF~GpTAIafS~ep 160 (362)
.+++|+.....-+++.-. +.+++..|..++++.|+. +.++ .|.++..+.|= -.|++++++.|
T Consensus 40 ~~~~W~~~G~~KVvlk~~--~~~el~~l~~~a~~~~l~-~~~v---------~DAG~Tei~pg--s~TvlaigP~~ 101 (115)
T TIGR00283 40 LRRKWLDEGQKKVVLKVN--SLEELLEIYHKAESLGLV-TGLI---------RDAGHTQIPPG--TITAVGIGPDE 101 (115)
T ss_pred HHHHHHHcCCCEEEEEeC--CHHHHHHHHHHHHHcCCC-EEEE---------EcCCcceeCCC--CcEEEEECCCC
Confidence 457787655543444332 789999999999999999 7776 45555544421 25888887654
No 46
>PF00619 CARD: Caspase recruitment domain; InterPro: IPR001315 The caspase recruitment domain domain (CARD) is a homotypic protein interaction module composed of a bundle of six alpha-helices. CARD is related in sequence and structure to the death domain (DD, see IPR000488 from INTERPRO) and the death effector domain (DED, see IPR001875 from INTERPRO), which work in similar pathways and show similar interaction properties []. The CARD domain typically associates with other CARD-containing proteins, forming either dimers or trimers. CARD domains can be found in isolation, or in combination with other domains. Domains associated with CARD include: NACHT (IPR007111 from INTERPRO) (in Nal1 and Bir1), NB-ARC (IPR002182 from INTERPRO) (in Apaf-1), pyrin/dapin domains (IPR004020 from INTERPRO) (in Nal1), leucine-rich repeats () (in Nal1), WD repeats (IPR001680 from INTERPRO) (in Apaf1), Src homology domains (IPR001452 from INTERPRO), PDZ (IPR001478 from INTERPRO), RING, kinase and DD domains []. CARD-containing proteins are involved in apoptosis through their regulation of caspases that contain CARDs in their N-terminal pro-domains, including human caspases 1, 2, 9, 11 and 12 []. CARD-containing proteins are also involved in inflammation through their regulation of NF-kappaB []. The mechanisms by which CARDs activate caspases and NF-kappaB involve the assembly of multi-protein complexes, which can facilitate dimerisation or serve as scaffolds on which proteases and kinases are assembled and activated.; GO: 0005515 protein binding, 0042981 regulation of apoptosis, 0005622 intracellular; PDB: 2NSN_A 2NZ7_B 2DBD_A 4E9M_C 2B1W_A 3YGS_P 2KN6_A 3CRD_A 1DGN_A 3KAT_A ....
Probab=25.02 E-value=2.9e+02 Score=21.26 Aligned_cols=54 Identities=13% Similarity=0.210 Sum_probs=44.7
Q ss_pred EEcCeecCHHHHHHhcC-CCHHHHHHHHHHHHHH----HHHHHHHHHHhhHHHHHHHHH
Q psy9196 181 IVDNRLLSKTETEMYAT-TNLATQQALLVQTISS----VATSLTSQLNHHSTTLVSYLD 234 (362)
Q Consensus 181 iVEGkvLs~~eI~~LAk-PSlEeL~AqLvg~Lqs----PasqLvs~Lqa~~~~Lv~vLd 234 (362)
.++..+|+.++.+.+-. |+...-..+|+-+|.. ....|...|......|+..|.
T Consensus 25 L~~~~vlt~~e~e~I~~~~t~~~k~~~LLd~l~~kg~~a~~~F~~~L~~~~~~La~~L~ 83 (85)
T PF00619_consen 25 LLSRGVLTEEEYEEIRSEPTRQDKARKLLDILKRKGPEAFDIFCQALRENQPHLADDLE 83 (85)
T ss_dssp HHHTTSSSHHHHHHHHTSSSHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHccCChHHHHHHHHHHHHHHCHHHHHHHHHHHHhhCHHHHHHHc
Confidence 34568999999999999 9999889999999984 334888888888888887774
No 47
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=24.92 E-value=3.6e+02 Score=21.46 Aligned_cols=63 Identities=10% Similarity=0.020 Sum_probs=43.0
Q ss_pred HHHHHHHHHhc-CCeEEEEecCCCcHHH------HHHHHHHHHHcCCeeEEEec-hhHHHHHHhcCCCCCCc
Q psy9196 82 LAKEILARFEE-SQMIAIVHRSSMLAEV------NREVKVVFKRVGMTMLDRYG-RATIEKALTNTKYISIM 145 (362)
Q Consensus 82 Lv~El~e~f~~-Sk~I~V~~y~GLtVed------~~~LR~~LRk~gi~~~KV~K-NtL~r~ALe~T~~e~L~ 145 (362)
+.+.+.+.+.. ..-.+++++.+++.=| +..+.+++++.|+. +.++. +.-++..++.+++..+.
T Consensus 26 ~~~~l~~~~~~~~~~~vilDls~v~~iDssgi~~L~~~~~~~~~~g~~-l~l~~~~~~v~~~l~~~gl~~~~ 96 (106)
T TIGR02886 26 VRRKIDDAIERRPIKHLILNLKNVTFMDSSGLGVILGRYKKIKNEGGE-VIVCNVSPAVKRLFELSGLFKII 96 (106)
T ss_pred HHHHHHHHHHhCCCCEEEEECCCCcEecchHHHHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHhCCceEE
Confidence 44455555542 3347888888877544 44566789999999 55555 88888889888865443
No 48
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=24.40 E-value=1.1e+02 Score=31.15 Aligned_cols=96 Identities=14% Similarity=0.130 Sum_probs=62.9
Q ss_pred cCCeEEEEecCCCcHHHHHHHHHHHHHcCCeeEEEechhHHHHHHhcCCCCCCcCccccceEEEEcCCc---hHHHHHHH
Q psy9196 92 ESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRATIEKALTNTKYISIMPLFKVSEAIIVSPEA---KVDVLLKT 168 (362)
Q Consensus 92 ~Sk~I~V~~y~GLtVed~~~LR~~LRk~gi~~~KV~KNtL~r~ALe~T~~e~L~plF~GpTAIafS~ep---~aK~llkf 168 (362)
++..++|+ .|..+....+.-..||+.|+. +.+++=.+++. -+.+.|..++.+...|++-++- -+..+...
T Consensus 273 ~ad~~iv~--~Gs~~~~a~eAv~~Lr~~G~~-v~~l~~~~l~P----fp~~~i~~~~~~~k~VivvEe~~g~l~~el~~~ 345 (376)
T PRK08659 273 DAEVVVVA--YGSVARSARRAVKEAREEGIK-VGLFRLITVWP----FPEEAIRELAKKVKAIVVPEMNLGQMSLEVERV 345 (376)
T ss_pred CCCEEEEE--eCccHHHHHHHHHHHHhcCCc-eEEEEeCeecC----CCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHH
Confidence 45544443 477778888888889999999 99988777764 2233466777777777776542 34444444
Q ss_pred HhhCCCeEEEEEEEcCeecCHHHHHHh
Q psy9196 169 LKKTPQLTLMATIVDNRLLSKTETEMY 195 (362)
Q Consensus 169 ~Kk~pkL~LkGGiVEGkvLs~~eI~~L 195 (362)
+...+.+...+++ +|+.++.++|.+.
T Consensus 346 ~~~~~~~~~i~~~-~G~~~~~~ei~~~ 371 (376)
T PRK08659 346 VNGRAKVEGINKI-GGELITPEEILEK 371 (376)
T ss_pred hCCCCCeeEEecc-CCCcCCHHHHHHH
Confidence 4332234455554 9999999998764
No 49
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=24.32 E-value=3.1e+02 Score=20.57 Aligned_cols=56 Identities=18% Similarity=0.401 Sum_probs=37.6
Q ss_pred HHHHHHHHHcCCeeEEEechhHHHHHHhcCCCCCCcCccccceEEEEcCC-----c-hHHHHHHHHhhCCCeEEE
Q psy9196 110 REVKVVFKRVGMTMLDRYGRATIEKALTNTKYISIMPLFKVSEAIIVSPE-----A-KVDVLLKTLKKTPQLTLM 178 (362)
Q Consensus 110 ~~LR~~LRk~gi~~~KV~KNtL~r~ALe~T~~e~L~plF~GpTAIafS~e-----p-~aK~llkf~Kk~pkL~Lk 178 (362)
.-|...|++.|+. ++.+.+. .. ++.. .+.|.|+++++ + .++.|.+|+++=..|.|.
T Consensus 8 ~a~~~~L~~~g~~-v~~~~~~-~~-~l~~----------~~~tll~i~~~~~~~~~~~~~~l~~~v~~G~~lvl~ 69 (70)
T PF14258_consen 8 YALYQLLEEQGVK-VERWRKP-YE-ALEA----------DDGTLLVIGPDLRLSEPEEAEALLEWVEAGNTLVLA 69 (70)
T ss_pred HHHHHHHHHCCCe-eEEeccc-HH-HhCC----------CCCEEEEEeCCCCCCchHHHHHHHHHHHcCCEEEEe
Confidence 3466788889998 7766664 22 4432 66677777765 2 467889998876666554
No 50
>PF05165 GGDN: GGDN family; InterPro: IPR007839 GTP cyclohydrolase III catalyses the formation of 2-amino-5-formylamino-6- ribofuranosylamino-4(3H)-pyrimidinone ribonucleotide monophosphate and inorganic phosphate from GTP. The enzyme also has an independent pyrophosphate phosphohydrolase activity. The proteins are 200-270 amino acids in length.; GO: 0003933 GTP cyclohydrolase activity, 0009058 biosynthetic process; PDB: 2QV6_B.
Probab=24.04 E-value=97 Score=30.46 Aligned_cols=71 Identities=17% Similarity=0.154 Sum_probs=46.6
Q ss_pred hhHHHHHHhcCCCCCCcCccccceEEEEcCCc---hHHHHHHHHhhCCCeEEEEEEEcCeecCHHHHHHhcCCCHHHHH
Q psy9196 129 RATIEKALTNTKYISIMPLFKVSEAIIVSPEA---KVDVLLKTLKKTPQLTLMATIVDNRLLSKTETEMYATTNLATQQ 204 (362)
Q Consensus 129 NtL~r~ALe~T~~e~L~plF~GpTAIafS~ep---~aK~llkf~Kk~pkL~LkGGiVEGkvLs~~eI~~LAkPSlEeL~ 204 (362)
+.|++... +|.+|.-++-|-|.++++++. .+..+++.++..-.+.|+.|+ |.--++.+-..+|+-.+|.+|
T Consensus 160 ~~l~~~~~---~~G~L~fylGGDNi~~v~p~~~~~~~~~~i~~V~~~~~i~lkvGI--Gig~ta~~A~~~At~ALe~iR 233 (246)
T PF05165_consen 160 AKLMKYLE---KYGSLAFYLGGDNIMAVCPDLDEDDLLDAIEHVEEEVGIDLKVGI--GIGKTARDAGMLATKALETIR 233 (246)
T ss_dssp HHHHHHHH---TTT---EEEETTEEEEE-TT--HHHHHHHHHHHHHHHS--EEEEE--EEESSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---hcCCEEEEecCceEEEECCCCCHHHHHHHHHHHHhhcCceEEEee--cCCCCHHHHHHHHHHHHHHHH
Confidence 67777762 377888899999999999874 566677666776778999998 455566676666666666655
No 51
>COG1933 Archaeal DNA polymerase II, large subunit [DNA replication, recombination, and repair]
Probab=23.68 E-value=24 Score=34.62 Aligned_cols=74 Identities=19% Similarity=0.108 Sum_probs=47.7
Q ss_pred hhhheeeeeecccccccCCCCCchhHHHHHHhhCCCCCCCCCCCCCChhhhhhhHHHHHHHhhhcccc-------cchHH
Q psy9196 7 ARQFSRTCVLERRINTRRPRPPCYEKALFIEISKPKFPPNPEYLLPSHEKCQKARARQWLMERKGLNE-------ENIFQ 79 (362)
Q Consensus 7 ~~~~~~~~VR~g~~ni~rpr~pHfeR~kl~AVteP~yppp~~~~~p~~e~C~~~~~~~~~e~~e~~~e-------~npy~ 79 (362)
.|.|++|.||.+++|- +-|+.=|-++.|+-.- .. .++ |.+....+.++++.+..+ .+..-
T Consensus 160 ~r~f~rq~~rc~~c~~-------k~rr~pl~g~c~kcg~-~~-~lt----v~~g~v~kyL~~t~~~~~~y~~~~y~~~ri 226 (253)
T COG1933 160 LRSFTRQEFRCVKCNT-------KFRRPPLDGKCPICGG-KI-VLT----VSKGAIEKYLGTAKMLVTEYKVKNYTRQRI 226 (253)
T ss_pred hhhhhhheeehHhhhh-------hhcCCCccccccccCC-eE-EEE----EeccHHHHHHHHHHHHHHHcCCcchHHHHH
Confidence 5899999999999883 2233334566655544 22 233 777777776776554433 23446
Q ss_pred HHHHHHHHHHHhcC
Q psy9196 80 NILAKEILARFEES 93 (362)
Q Consensus 80 ~iLv~El~e~f~~S 93 (362)
.+|+.++.+.|++.
T Consensus 227 ~~~~~~i~~~f~~~ 240 (253)
T COG1933 227 CLTERDIDSLFETV 240 (253)
T ss_pred HHHHHHHhcccccc
Confidence 67888888888875
No 52
>COG2429 Archaeal GTP cyclohydrolase III [Nucleotide transport and metabolism]
Probab=23.39 E-value=1.6e+02 Score=29.04 Aligned_cols=73 Identities=11% Similarity=0.037 Sum_probs=53.4
Q ss_pred hHHHHHHhcCCCCCCcCccccceEEEEcCCc---hHHHHHHHHhhCCCeEEEEEEEcCeecCHHHHHHhcCCCHHHHHHH
Q psy9196 130 ATIEKALTNTKYISIMPLFKVSEAIIVSPEA---KVDVLLKTLKKTPQLTLMATIVDNRLLSKTETEMYATTNLATQQAL 206 (362)
Q Consensus 130 tL~r~ALe~T~~e~L~plF~GpTAIafS~ep---~aK~llkf~Kk~pkL~LkGGiVEGkvLs~~eI~~LAkPSlEeL~Aq 206 (362)
+|++...+ +..|.-++-|-|++++++.. .+...+.-+.+--.+.|+.|+ |.-=++.+--.+|+-.+|++|++
T Consensus 165 ~L~~~l~k---~gal~fflGGDN~ma~~p~~s~g~v~d~i~~v~~~~~v~lkvGI--Gig~ta~~A~~lA~~aLe~iR~~ 239 (250)
T COG2429 165 TLMRFLEK---IGALLFFLGGDNIMAVCPGLSAGDVLDAIAEVLDDAEVDLKVGI--GIGKTARDAGALATHALEKIRGK 239 (250)
T ss_pred HHHHHHHh---cCcEEEEecCcceEEECCCCCchhHHHHHHHHHHhhccceEeee--ccCCCHHHHHHHHHHHHHHHhcc
Confidence 56666554 67888888999999999863 466666555555678899988 44446777778888888888775
Q ss_pred H
Q psy9196 207 L 207 (362)
Q Consensus 207 L 207 (362)
.
T Consensus 240 ~ 240 (250)
T COG2429 240 G 240 (250)
T ss_pred C
Confidence 4
No 53
>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]
Probab=23.27 E-value=1.7e+02 Score=29.44 Aligned_cols=49 Identities=12% Similarity=0.123 Sum_probs=40.3
Q ss_pred HHHHHHHHHhcCCeEEEEecCCCcHHHHHHHHHHHHHcCCeeEEEechh
Q psy9196 82 LAKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRA 130 (362)
Q Consensus 82 Lv~El~e~f~~Sk~I~V~~y~GLtVed~~~LR~~LRk~gi~~~KV~KNt 130 (362)
+.+..-+.-.+-...+..|--..+-+++..+=..+++.|+..++|+|-.
T Consensus 146 vl~~a~elA~dvdc~vqLHtes~~~~~~~~i~~~ak~~G~~~~~VVkHh 194 (285)
T COG1831 146 VLEYAMELAKDVDCAVQLHTESLDEETYEEIAEMAKEAGIKPYRVVKHH 194 (285)
T ss_pred HHHHHHHHhhcCCCcEEEecCCCChHHHHHHHHHHHHhCCCcceeEeec
Confidence 3444455567888899999999999999999999999999558998843
No 54
>cd02430 PTH2 Peptidyl-tRNA hydrolase, type 2 (PTH2). Peptidyl-tRNA hydrolase (PTH) activity releases tRNA from the premature translation termination product peptidyl-tRNA, therefore allowing the tRNA and peptide to be reused in protein synthesis. PTH2 is present in archaea and eukaryotes.
Probab=22.91 E-value=4.9e+02 Score=22.40 Aligned_cols=62 Identities=18% Similarity=0.130 Sum_probs=42.3
Q ss_pred HHHHHHhcCCeEEEEecCCCcHHHHHHHHHHHHHcCCeeEEEechhHHHHHHhcCCCCCCcCccccceEEEEcCCc
Q psy9196 85 EILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRATIEKALTNTKYISIMPLFKVSEAIIVSPEA 160 (362)
Q Consensus 85 El~e~f~~Sk~I~V~~y~GLtVed~~~LR~~LRk~gi~~~KV~KNtL~r~ALe~T~~e~L~plF~GpTAIafS~ep 160 (362)
.++.|+..-.-.+|+.-. +.+++..|..++++.|+. +.++ .|.++..+.|= -+|+|++.+.|
T Consensus 40 ~~~~W~~~G~~KiVl~~~--~~~el~~l~~~a~~~~l~-~~~v---------~DAG~Tev~~g--t~T~laigP~~ 101 (115)
T cd02430 40 LLRAWEREGQKKIVLKVN--SEEELLELKKKAKSLGLP-TSLI---------QDAGRTQIAPG--TITVLGIGPAP 101 (115)
T ss_pred HHHHHHhcCCcEEEEecC--CHHHHHHHHHHHHHcCCC-eEEE---------EeCCCcccCCC--CceEEEeCCCC
Confidence 455677655444444433 788999999999999999 8887 35565444332 25888888654
No 55
>PF03401 TctC: Tripartite tricarboxylate transporter family receptor; InterPro: IPR005064 Bordetella pertussis, the causative agent of human whooping cough (pertussis), is an obligate human pathogen with diverse high-affinity transport systems for the assimilation of iron, a biometal that is essential for growth []. Periplasmic binding proteins of a new family, particularly well represented in this organism (and more generally in beta-proteobacteria), have been called Bug receptors []. They adopt a characteristic Venus flytrap fold with two globular domains bisected by a ligand-binding cleft. The family is specific for carboxylated solutes, with a characteristic mode of binding involving two highly conserved beta strand-beta turn-alpha helix motifs originating from each domain. These two motifs form hydrogen bonds with a carboxylate group of the ligand, both directly and via conserved water molecules, and have thus been termed the carboxylate pincers. Domain 1 recognises the ligand and the carboxylate group serves as an initial anchoring point. Domain 2 discriminates between productively and non-productively bound ligands as proper interactions with this domain is needed for the of the closed conformation []. BugE has a glutamate bound ligand. No charged residues are involved in glutamate binding by BugE, unlike what has been described for all glutamate receptors reported so far. The Bug architecture is highly conserved despite limited sequence identity [].; GO: 0030288 outer membrane-bounded periplasmic space; PDB: 2QPQ_C 2DVZ_A 2F5X_A.
Probab=22.78 E-value=5.5e+02 Score=24.71 Aligned_cols=97 Identities=15% Similarity=0.164 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHhcCCeEEEEecCCCcH-HHHHHHHHHHHHcCCeeEEEechhH-HHHHH-hcCCCC---CCcC---cccc
Q psy9196 80 NILAKEILARFEESQMIAIVHRSSMLA-EVNREVKVVFKRVGMTMLDRYGRAT-IEKAL-TNTKYI---SIMP---LFKV 150 (362)
Q Consensus 80 ~iLv~El~e~f~~Sk~I~V~~y~GLtV-ed~~~LR~~LRk~gi~~~KV~KNtL-~r~AL-e~T~~e---~L~p---lF~G 150 (362)
|++.+.+.+.+.. -|+|.+--|=.. -=+..+.+ -+.-|-. +-+.-+.+ +-..+ .+.+|. ++.+ +...
T Consensus 3 R~~a~~l~~~lg~--~vvV~N~pGggG~vg~~~v~~-a~~DGyT-l~~~~~~~~~~~~l~~~~~y~~~~df~pv~~~~~~ 78 (274)
T PF03401_consen 3 RALAEYLEKELGQ--PVVVVNKPGGGGAVGANYVAN-APADGYT-LLMGSSSLIIAPLLYGKVPYDPLDDFTPVARIASD 78 (274)
T ss_dssp HHHHHHHHHHHSS---EEEEE--TGGGHHHHHHHHT-S-SSSSE-EEEEETHHHHHHHHCST-SS-TTTSEEEEEEEEEE
T ss_pred HHHHHHHHHHhCC--CEEEEeecCCCcHHHHHHHhc-cCCCCCe-eeeccchhhhhHHHhcCCCCChhhhhheehhhhcc
Confidence 5677888888853 366677655333 23333432 2233445 55555554 32344 788876 3333 3356
Q ss_pred ceEEEEcCC-c--hHHHHHHHHhhCCCeEEEEE
Q psy9196 151 SEAIIVSPE-A--KVDVLLKTLKKTPQLTLMAT 180 (362)
Q Consensus 151 pTAIafS~e-p--~aK~llkf~Kk~pkL~LkGG 180 (362)
+++|+...+ | .+..|++++|++|.-...|.
T Consensus 79 ~~vl~v~~dsp~~t~~eli~~ak~~p~~~~~g~ 111 (274)
T PF03401_consen 79 PNVLVVRADSPYKTLEELIEYAKANPGKLTFGS 111 (274)
T ss_dssp EEEEEEETTSS-SSHHHHHHHHHCSCCC-EEEE
T ss_pred ceEEEEeCCCccccHHHHHHHHHhCCCCeEEEe
Confidence 788888876 4 79999999999997544454
No 56
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=22.50 E-value=1.4e+02 Score=27.82 Aligned_cols=80 Identities=9% Similarity=0.190 Sum_probs=45.3
Q ss_pred EEEEecCCCcHHHHHHHHHHHHHcCCeeEEEechhHHHHHHhcCCCCCCcCccccceEEEEcCCc----hHHHHHHHHhh
Q psy9196 96 IAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRATIEKALTNTKYISIMPLFKVSEAIIVSPEA----KVDVLLKTLKK 171 (362)
Q Consensus 96 I~V~~y~GLtVed~~~LR~~LRk~gi~~~KV~KNtL~r~ALe~T~~e~L~plF~GpTAIafS~ep----~aK~llkf~Kk 171 (362)
|.|+++.. .-...+...|++.|+. +.++++..-. + +.+..++....+|+++..| .....+++++.
T Consensus 3 ilv~d~~~---~~~~~~~~~l~~~G~~-~~~~~~~~~~--~-----~~~~~~~~~~dgliisGGp~~~~~~~~~~~~i~~ 71 (214)
T PRK07765 3 ILVVDNYD---SFVFNLVQYLGQLGVE-AEVWRNDDPR--L-----ADEAAVAAQFDGVLLSPGPGTPERAGASIDMVRA 71 (214)
T ss_pred EEEEECCC---cHHHHHHHHHHHcCCc-EEEEECCCcC--H-----HHHHHhhcCCCEEEECCCCCChhhcchHHHHHHH
Confidence 55555553 2223577889999999 9999987411 1 1122234456677887433 12222333333
Q ss_pred C--CCeEEEEEEEcCee
Q psy9196 172 T--PQLTLMATIVDNRL 186 (362)
Q Consensus 172 ~--pkL~LkGGiVEGkv 186 (362)
. ..+.++|-|+.-++
T Consensus 72 ~~~~~~PiLGIC~G~Ql 88 (214)
T PRK07765 72 CAAAGTPLLGVCLGHQA 88 (214)
T ss_pred HHhCCCCEEEEccCHHH
Confidence 2 24788998886544
No 57
>PRK05637 anthranilate synthase component II; Provisional
Probab=22.46 E-value=1.7e+02 Score=27.28 Aligned_cols=76 Identities=11% Similarity=0.237 Sum_probs=44.6
Q ss_pred EEEEec-CCCcHHHHHHHHHHHHHcCCeeEEEechhHHHHHHhcCCCCCCcCccccceEEEEcCCc----hHHHHHHHHh
Q psy9196 96 IAIVHR-SSMLAEVNREVKVVFKRVGMTMLDRYGRATIEKALTNTKYISIMPLFKVSEAIIVSPEA----KVDVLLKTLK 170 (362)
Q Consensus 96 I~V~~y-~GLtVed~~~LR~~LRk~gi~~~KV~KNtL~r~ALe~T~~e~L~plF~GpTAIafS~ep----~aK~llkf~K 170 (362)
|+|+|| .+.+.. |-+.|++.|+. +.|+++..--..+ . ...+.+|++|+.| ....+.++++
T Consensus 4 il~iD~~dsf~~n----l~~~l~~~g~~-~~v~~~~~~~~~l--------~--~~~~~~iIlsgGPg~~~d~~~~~~li~ 68 (208)
T PRK05637 4 VVLIDNHDSFVYN----LVDAFAVAGYK-CTVFRNTVPVEEI--------L--AANPDLICLSPGPGHPRDAGNMMALID 68 (208)
T ss_pred EEEEECCcCHHHH----HHHHHHHCCCc-EEEEeCCCCHHHH--------H--hcCCCEEEEeCCCCCHHHhhHHHHHHH
Confidence 445554 444433 66677778999 9999986311111 1 1255679998766 2333444554
Q ss_pred h-CCCeEEEEEEEcCee
Q psy9196 171 K-TPQLTLMATIVDNRL 186 (362)
Q Consensus 171 k-~pkL~LkGGiVEGkv 186 (362)
. ...+.++|-|+.-++
T Consensus 69 ~~~~~~PiLGIClG~Ql 85 (208)
T PRK05637 69 RTLGQIPLLGICLGFQA 85 (208)
T ss_pred HHhCCCCEEEEcHHHHH
Confidence 3 235789998885433
No 58
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=22.09 E-value=6.8e+02 Score=24.31 Aligned_cols=93 Identities=14% Similarity=0.110 Sum_probs=51.3
Q ss_pred HHHHHHhcCC--eEEEEecCCCcHHHHHHHHHHHHHcCCeeEE-Eechh----HHHHHHhcCCCCCCcCccccceEEEEc
Q psy9196 85 EILARFEESQ--MIAIVHRSSMLAEVNREVKVVFKRVGMTMLD-RYGRA----TIEKALTNTKYISIMPLFKVSEAIIVS 157 (362)
Q Consensus 85 El~e~f~~Sk--~I~V~~y~GLtVed~~~LR~~LRk~gi~~~K-V~KNt----L~r~ALe~T~~e~L~plF~GpTAIafS 157 (362)
..-+.+.++. .++| ..|..++...++..++++|+..+- +.+|+ +-+++-...+|--+-. ..|.|..--.
T Consensus 108 ~f~~~~~~aGvdGvii---pDLp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s~gfIY~vs-~~GvTG~~~~ 183 (258)
T PRK13111 108 RFAADAAEAGVDGLII---PDLPPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASHASGFVYYVS-RAGVTGARSA 183 (258)
T ss_pred HHHHHHHHcCCcEEEE---CCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEe-CCCCCCcccC
Confidence 3344444443 3444 478899999999999999988343 45666 2223333333322111 1344444111
Q ss_pred CCchHHHHHHHHhhCCCe-EEEEEE
Q psy9196 158 PEAKVDVLLKTLKKTPQL-TLMATI 181 (362)
Q Consensus 158 ~ep~aK~llkf~Kk~pkL-~LkGGi 181 (362)
..+.+..+++.+|+...+ .+.|+-
T Consensus 184 ~~~~~~~~i~~vk~~~~~pv~vGfG 208 (258)
T PRK13111 184 DAADLAELVARLKAHTDLPVAVGFG 208 (258)
T ss_pred CCccHHHHHHHHHhcCCCcEEEEcc
Confidence 122677788888876444 444443
No 59
>KOG4241|consensus
Probab=22.07 E-value=44 Score=32.42 Aligned_cols=52 Identities=21% Similarity=0.351 Sum_probs=39.1
Q ss_pred hhhhheeeeeecccccccCCCCCchhHHHHHHhhCCCCCCCCCCCCCChhhhhhhHHHH
Q psy9196 6 LARQFSRTCVLERRINTRRPRPPCYEKALFIEISKPKFPPNPEYLLPSHEKCQKARARQ 64 (362)
Q Consensus 6 ~~~~~~~~~VR~g~~ni~rpr~pHfeR~kl~AVteP~yppp~~~~~p~~e~C~~~~~~~ 64 (362)
+-|-..-+.+|.-+..+.||++.||.|+++.+-.+|-.++.. ..|++|...+
T Consensus 5 ~~r~L~~~~~r~pslq~~R~~~k~~~rr~~~~h~~r~~~~aV-------t~~ipP~l~k 56 (245)
T KOG4241|consen 5 SLRPLVNVQVRSPSLQYPRPTPKHFKRRLFEAHLKRELPPAV-------TMCIPPGLIK 56 (245)
T ss_pred hccccchhhccCccccccccCchhhhhcchhhhcccccCccc-------ccccCCCCcc
Confidence 345667788999999999999889999998877775555544 3687776554
No 60
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=22.07 E-value=2e+02 Score=23.33 Aligned_cols=38 Identities=13% Similarity=0.186 Sum_probs=31.6
Q ss_pred HHhcCCeEEEEecCCCcHHHHHHHHHHHHHcCCeeEEEe
Q psy9196 89 RFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRY 127 (362)
Q Consensus 89 ~f~~Sk~I~V~~y~GLtVed~~~LR~~LRk~gi~~~KV~ 127 (362)
.+.+..+++++.+.|-+.+-+..+| .+++.|+.++-+.
T Consensus 50 ~~~~~d~vi~is~sg~~~~~~~~~~-~ak~~g~~vi~iT 87 (131)
T PF01380_consen 50 NLDPDDLVIIISYSGETRELIELLR-FAKERGAPVILIT 87 (131)
T ss_dssp GCSTTEEEEEEESSSTTHHHHHHHH-HHHHTTSEEEEEE
T ss_pred cccccceeEeeeccccchhhhhhhH-HHHhcCCeEEEEe
Confidence 3467789999999999988888888 9999999944444
No 61
>KOG3771|consensus
Probab=21.75 E-value=8.5e+02 Score=26.24 Aligned_cols=35 Identities=37% Similarity=0.333 Sum_probs=21.6
Q ss_pred CCCCcccccCCCcCCCCCCCccccccccccchHhh
Q psy9196 243 GGSSASEALSGSETSGGSEGEATSNEASGESQESA 277 (362)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (362)
......++++.+-+++|+-.-.....-++-+++.+
T Consensus 244 ~~~~~~~~~~~~~~~~~sspl~~pt~~s~~~~~~a 278 (460)
T KOG3771|consen 244 DALPKLEALSPSPTDGGSSPLTSPTSRSSLGQEPA 278 (460)
T ss_pred ccccchhccCCCCCCcCCCCCCCCCCCCCCCCCCC
Confidence 34556788888888888765544444444444443
No 62
>PRK03511 minC septum formation inhibitor; Reviewed
Probab=21.20 E-value=4.7e+02 Score=25.03 Aligned_cols=58 Identities=5% Similarity=0.138 Sum_probs=37.1
Q ss_pred HHHHHHHHHhcCC-----eEEEEecCCCc-HHHHHHHHHHHHHcCCeeEEEec---hhHHHHHHhcCC
Q psy9196 82 LAKEILARFEESQ-----MIAIVHRSSML-AEVNREVKVVFKRVGMTMLDRYG---RATIEKALTNTK 140 (362)
Q Consensus 82 Lv~El~e~f~~Sk-----~I~V~~y~GLt-Ved~~~LR~~LRk~gi~~~KV~K---NtL~r~ALe~T~ 140 (362)
|.++|.++|+.++ .-+++++.+++ .+|+..|...|+.+|+. ..-+. +...+.++...+
T Consensus 28 l~~~L~~ki~~a~~FF~~apvvld~~~l~~~~~~~~L~~~l~~~gl~-~vgv~~~~~~~~~~~~~~~g 94 (228)
T PRK03511 28 IRQALEDKIAQAPAFLKNAPVVINVSALEDPVNWSALHKAVSSTGLR-VVGVSGCKDAQLKAEIARAG 94 (228)
T ss_pred HHHHHHHHHHhChHHhCCCeEEEEeccCCChHHHHHHHHHHHHCCCE-EEEEEcCChHHHHHHHHhcC
Confidence 4455555554432 23688888887 57899999999999987 44443 333444444433
No 63
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=20.37 E-value=3.1e+02 Score=22.18 Aligned_cols=38 Identities=16% Similarity=0.184 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCCCcHHHHHHHHHHHH
Q psy9196 79 QNILAKEILARFEESQMIAIVHRSSMLAEVNREVKVVFK 117 (362)
Q Consensus 79 ~~iLv~El~e~f~~Sk~I~V~~y~GLtVed~~~LR~~LR 117 (362)
...++++|.+.+++-.++.|++. |++.+.+..+....+
T Consensus 13 ~~~~~~~l~~A~~~~GFf~l~nh-Gi~~~l~~~~~~~~~ 50 (116)
T PF14226_consen 13 REEVAEQLRDACEEWGFFYLVNH-GIPQELIDRVFAAAR 50 (116)
T ss_dssp HHHHHHHHHHHHHHTSEEEEESS-SSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCEEEEecc-cccchhhHHHHHHHH
Confidence 45689999999999998777666 999977766665443
Done!