Query psy9196
Match_columns 362
No_of_seqs 181 out of 1049
Neff 4.5
Searched_HMMs 29240
Date Fri Aug 16 21:21:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9196.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9196hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2j01_J 50S ribosomal protein L 100.0 7E-41 2.4E-45 299.5 22.8 162 78-241 5-172 (173)
2 1zav_A 50S ribosomal protein L 100.0 1.3E-40 4.6E-45 299.4 21.2 164 77-241 6-179 (180)
3 3sgf_H 50S ribosomal protein L 100.0 1.7E-39 5.9E-44 289.2 -10.7 153 79-242 8-164 (165)
4 3a1y_G Acidic ribosomal protei 99.7 6.8E-18 2.3E-22 161.5 6.3 114 79-195 8-131 (284)
5 1vq8_G Acidic ribosomal protei 99.7 2.9E-17 9.9E-22 161.7 4.0 119 75-197 12-135 (348)
6 3jsy_A Acidic ribosomal protei 99.6 1.8E-15 6.3E-20 139.6 8.5 89 78-168 4-102 (213)
7 3j21_k Acidic ribosomal protei 99.5 3.2E-15 1.1E-19 146.6 6.3 88 80-168 9-106 (339)
8 3u5i_q A0, L10E, 60S acidic ri 99.5 1.7E-14 5.7E-19 140.2 10.9 111 78-192 7-125 (312)
9 2zkr_g 60S acidic ribosomal pr 99.5 1.6E-15 5.5E-20 147.6 0.0 108 78-189 9-124 (317)
10 3iz5_s 60S acidic ribosomal pr 99.5 1.9E-14 6.5E-19 140.2 6.6 88 79-168 11-108 (319)
11 2lnd_A De novo designed protei 58.3 19 0.00064 29.1 5.6 42 88-130 45-86 (112)
12 1sbo_A Putative anti-sigma fac 55.0 48 0.0016 24.9 7.4 66 82-148 31-104 (110)
13 2ka5_A Putative anti-sigma fac 48.7 58 0.002 25.9 7.3 63 82-145 39-109 (125)
14 4hyl_A Stage II sporulation pr 42.3 23 0.00078 27.5 3.8 62 82-145 31-99 (117)
15 1zav_A 50S ribosomal protein L 37.4 33 0.0011 30.0 4.4 28 199-226 148-175 (180)
16 2j01_J 50S ribosomal protein L 36.8 32 0.0011 29.9 4.2 27 200-226 142-168 (173)
17 1th8_B Anti-sigma F factor ant 34.4 55 0.0019 24.9 4.8 62 82-144 30-99 (116)
18 3t6o_A Sulfate transporter/ant 33.1 85 0.0029 24.6 5.9 63 82-145 35-106 (121)
19 1a9x_B Carbamoyl phosphate syn 25.2 33 0.0011 33.7 2.4 76 95-186 192-273 (379)
20 2qh8_A Uncharacterized protein 22.6 2E+02 0.007 25.4 7.1 91 82-179 129-225 (302)
21 2kln_A Probable sulphate-trans 22.3 2.6E+02 0.0087 22.0 6.9 64 79-143 30-103 (130)
22 3l49_A ABC sugar (ribose) tran 20.9 4E+02 0.014 22.8 10.1 108 74-181 15-134 (291)
23 1wn2_A Peptidyl-tRNA hydrolase 20.6 3.5E+02 0.012 22.1 7.7 62 84-159 45-106 (121)
24 4fix_A UDP-galactofuranosyl tr 20.5 3.8E+02 0.013 27.8 9.5 91 81-182 194-306 (657)
No 1
>2j01_J 50S ribosomal protein L10; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} PDB: 2j03_J 3d5b_J 3d5d_J 3i8i_Y 3kir_J 3kit_J 3kiw_J 3kiy_J 3mrz_I 3ms1_I 3pyt_I 3pyr_I 3pyo_I 3pyv_I
Probab=100.00 E-value=7e-41 Score=299.52 Aligned_cols=162 Identities=15% Similarity=0.177 Sum_probs=156.3
Q ss_pred HHHHHHHHHHHHHhcCC-eEEEEecCCCcHHHHHHHHHHHHHcCCeeEEEechhHHHHHHhcCCCCCCcCccccceEEEE
Q psy9196 78 FQNILAKEILARFEESQ-MIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRATIEKALTNTKYISIMPLFKVSEAIIV 156 (362)
Q Consensus 78 y~~iLv~El~e~f~~Sk-~I~V~~y~GLtVed~~~LR~~LRk~gi~~~KV~KNtL~r~ALe~T~~e~L~plF~GpTAIaf 156 (362)
-+..++++|+++|++++ +++|+||+||+++++++||++||++|+. |+|+||||+++|+++++|+. .++|+|||+|+|
T Consensus 5 ~K~~~v~el~~~l~~~~~~v~v~~~~gltv~~~~~LR~~lr~~g~~-~~V~KNtL~~~Al~~~~~~~-~~~l~G~~a~~f 82 (173)
T 2j01_J 5 RNVELLATLKENLERAQGSFFLVNYQGLPAKETHALRQALKQNGAR-LFVAKNTLIRLALKELGLPE-LDGLQGPSAVVF 82 (173)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEEcCCCCHHHHHHHHHHHHHCCcE-EEEehhHHHHHHHhcCCCCc-cccccCCEEEEE
Confidence 46679999999999999 9999999999999999999999999999 99999999999999999999 999999999999
Q ss_pred cCCc--hHHHHHHHHhhC--CCeEEEEEEEcCeecCHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy9196 157 SPEA--KVDVLLKTLKKT--PQLTLMATIVDNRLLSKTETEMYAT-TNLATQQALLVQTISSVATSLTSQLNHHSTTLVS 231 (362)
Q Consensus 157 S~ep--~aK~llkf~Kk~--pkL~LkGGiVEGkvLs~~eI~~LAk-PSlEeL~AqLvg~LqsPasqLvs~Lqa~~~~Lv~ 231 (362)
+.|| .+|.+.+|.|++ ++|.|+||++||++|+.++|++||+ ||+|+|++||+|+|++|+++++++|++++++|++
T Consensus 83 s~dp~~~ak~l~~f~k~~~~~~l~ikgg~~eg~~~~~~~v~~la~LPs~eel~a~l~g~l~ap~~~~~~~l~~~~~~l~~ 162 (173)
T 2j01_J 83 YEDPVAAAKTLVQFAKSNPKGIPQVKSGLLQGQILTAKDVEALAELPTMDELRAELVGVLQAPMAELVGVLGGVARELVG 162 (173)
T ss_pred eCCHHHHHHHHHHHHHhCCCCCeEEEEEEECCEEcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 9556 578888999999 9999999999999999999999999 9999999999999999999999999999999999
Q ss_pred HHHHHHhccC
Q psy9196 232 YLDQHSGTGG 241 (362)
Q Consensus 232 vLdq~~kqq~ 241 (362)
+|++|.+|++
T Consensus 163 ~l~a~~~k~~ 172 (173)
T 2j01_J 163 ILEAYAEKKA 172 (173)
T ss_pred HHHHHHHhhc
Confidence 9999999875
No 2
>1zav_A 50S ribosomal protein L10; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: d.58.62.1 PDB: 1zaw_A 1zax_A
Probab=100.00 E-value=1.3e-40 Score=299.39 Aligned_cols=164 Identities=16% Similarity=0.208 Sum_probs=157.2
Q ss_pred hHHHHHHHHHHHHHhcCCeEEEEecCCCcHHHHHHHHHHHHHc---CCeeEEEechhHHHHHHhcCCCCCCcCccccceE
Q psy9196 77 IFQNILAKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRV---GMTMLDRYGRATIEKALTNTKYISIMPLFKVSEA 153 (362)
Q Consensus 77 py~~iLv~El~e~f~~Sk~I~V~~y~GLtVed~~~LR~~LRk~---gi~~~KV~KNtL~r~ALe~T~~e~L~plF~GpTA 153 (362)
.-+..++++|+++|+++++++|+||+||+++++++||++||++ |+. |+|+||||+++|+++++|++|.++|+|||+
T Consensus 6 ~~K~~~v~el~~~l~~~~~v~v~~~~gltv~q~~~LR~~lr~~~~~g~~-~~V~KNtL~~~Al~~~~~~~L~~~l~G~~a 84 (180)
T 1zav_A 6 QQKELIVKEMSEIFKKTSLILFADFLGFTVADLTELRSRLREKYGDGAR-FRVVKNTLLNLALKNAEYEGYEEFLKGPTA 84 (180)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEECCTTCCHHHHHHHHHHHHHHHTTSEE-EEEECHHHHHHHHHHTTCCSCGGGCSSSEE
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEEeCCCCHHHHHHHHHHHHhcccCCeE-EEEehHHHHHHHHccCChhhHHHhCcCCEE
Confidence 3467799999999999999999999999999999999999999 999 999999999999999999999999999999
Q ss_pred EEEcC--Cc--hHHHHHHHHhhC--CCeEEEEEEEcCeecCHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy9196 154 IIVSP--EA--KVDVLLKTLKKT--PQLTLMATIVDNRLLSKTETEMYAT-TNLATQQALLVQTISSVATSLTSQLNHHS 226 (362)
Q Consensus 154 IafS~--ep--~aK~llkf~Kk~--pkL~LkGGiVEGkvLs~~eI~~LAk-PSlEeL~AqLvg~LqsPasqLvs~Lqa~~ 226 (362)
|+|++ || .+|.+.+|.|++ ++|.|+||++||++|+.++|++||+ ||+|+|++||+|+|++|+++++++|++++
T Consensus 85 ~~fs~~~dp~~~ak~l~~f~k~~~~~~l~ikgg~~eg~~~~~~~v~~la~LPs~eel~a~l~g~l~ap~~~l~~~l~~~~ 164 (180)
T 1zav_A 85 VLYVTEGDPVEAVKIIYNFYKDKKADLSRLKGGFLEGKKFTAEEVENIAKLPSKEELYAMLVGRVKAPITGLVFALSGIL 164 (180)
T ss_dssp EEEESSSCTHHHHHHHHHHHHHTTCCGGGEEEEEETTEEEEHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHHHHHHhCCCCCeEEEEEEECCEEcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99995 55 578888999999 9999999999999999999999999 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccC
Q psy9196 227 TTLVSYLDQHSGTGG 241 (362)
Q Consensus 227 ~~Lv~vLdq~~kqq~ 241 (362)
++|+++|++|.+|++
T Consensus 165 ~~l~~~l~a~~~k~~ 179 (180)
T 1zav_A 165 RNLVYVLNAIKEKKS 179 (180)
T ss_dssp HHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999999999875
No 3
>3sgf_H 50S ribosomal protein L10; typeii release factor binding with ribosome, ribosome-antibi complex; 3.20A {Escherichia coli} PDB: 3uos_H 3j12_J* 3j0w_J* 3j0y_J* 3j11_J* 3j0t_J* 3j14_J*
Probab=100.00 E-value=1.7e-39 Score=289.20 Aligned_cols=153 Identities=12% Similarity=0.164 Sum_probs=142.6
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCCCcHHHHHHHHHHHHHcCCeeEEEechhHHHHHHhcCCCCCCcCccccceEEEEcC
Q psy9196 79 QNILAKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRATIEKALTNTKYISIMPLFKVSEAIIVSP 158 (362)
Q Consensus 79 ~~iLv~El~e~f~~Sk~I~V~~y~GLtVed~~~LR~~LRk~gi~~~KV~KNtL~r~ALe~T~~e~L~plF~GpTAIafS~ 158 (362)
+..++++|+++|+++++++|+||+||+++++++||++||++|++ |+|+||||+++|+++++|++|.++|+|||+|+|++
T Consensus 8 K~~~V~el~~~l~~~~~v~v~~~~gltv~q~~~LR~~lr~~g~~-~~V~KNtL~~~Al~~~~~~~L~~~l~G~tai~fs~ 86 (165)
T 3sgf_H 8 KQAIVAEVSEVAKGALSAVVADSRGVTVDKMTELRKAGREAGVY-MRVVRNTLLRRAVEGTPFECLKDAFVGPTLIAYSM 86 (165)
T ss_dssp HHHHHHHHHHHHSCSCEEECCCTTCCHHHHHHHTTTTTSSCCSS-EECCCCTTTTTTTTTCTTTCTTCSTTCCSCCCEEE
T ss_pred HHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHHHcCcE-EEEECcHHHHHHHhcCCcchhHHhCcCCEEEEEeC
Confidence 45699999999999999999999999999999999999999999 99999999999999999999999999999999994
Q ss_pred -Cc--hHHHHHHHHhhCCCeEEEEEEEcCeecCHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy9196 159 -EA--KVDVLLKTLKKTPQLTLMATIVDNRLLSKTETEMYAT-TNLATQQALLVQTISSVATSLTSQLNHHSTTLVSYLD 234 (362)
Q Consensus 159 -ep--~aK~llkf~Kk~pkL~LkGGiVEGkvLs~~eI~~LAk-PSlEeL~AqLvg~LqsPasqLvs~Lqa~~~~Lv~vLd 234 (362)
|| .+|.+.+|.|++++|.|+||++||++|+.++|++||+ ||+|+|++||+|+|++|++ .+|+++|+
T Consensus 87 ~dp~~~aK~l~~f~K~~~~l~ikgg~~eg~~~~~~~v~~la~LPs~eel~a~l~g~l~ap~~----------~~l~~~l~ 156 (165)
T 3sgf_H 87 EHPGAAARLFKEFAKANAKFEVKAAAFEGELIPASQIDRLATLPTYEEAIARLMATMKEASA----------GKLVRTLA 156 (165)
T ss_dssp ECSSCSHHHHHHHHHHGGGSSSCCTTCCCCTTTTCCCCCCCTTTTTTCTHHHHTTTTTTTST----------TTTTTTTT
T ss_pred CCHHHHHHHHHHHHHhCCCcEEEEEEEcCEEeCHHHHHHHHcCCCHHHHHHHHHHHHHHHHH----------HHHHHHHH
Confidence 56 6888999999999999999999999999999999999 9999999999999999987 15666777
Q ss_pred HHHhccCC
Q psy9196 235 QHSGTGGE 242 (362)
Q Consensus 235 q~~kqq~e 242 (362)
++.+|+++
T Consensus 157 a~~~~k~~ 164 (165)
T 3sgf_H 157 AVRDAKEA 164 (165)
T ss_dssp SGGGTCC-
T ss_pred HHHHhhcc
Confidence 78888754
No 4
>3a1y_G Acidic ribosomal protein P0; stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}
Probab=99.70 E-value=6.8e-18 Score=161.49 Aligned_cols=114 Identities=16% Similarity=0.158 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCCCcHHHHHHHHHHHHHcCCeeEEEechhHHHHHHhcCC-------CCCCcCccccc
Q psy9196 79 QNILAKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRATIEKALTNTK-------YISIMPLFKVS 151 (362)
Q Consensus 79 ~~iLv~El~e~f~~Sk~I~V~~y~GLtVed~~~LR~~LRk~gi~~~KV~KNtL~r~ALe~T~-------~e~L~plF~Gp 151 (362)
+..++++|+++|++++.++|++|+||++.++++||++||+.|+. |+|+||||||+|+++++ |+.|.++|+|+
T Consensus 8 K~~~v~el~~~l~~~~~v~v~~~~gl~~~ql~~lR~~lr~~g~~-~~v~KNtL~~~Al~~~~~~~~~~~~~~L~~~l~G~ 86 (284)
T 3a1y_G 8 KKKEVEELAKLIKSYPVIALVDVSSMPAYPLSQMRRLIRENGGL-LRVSRNTLIELAIKKAAKELGKPELEKLVEYIDRG 86 (284)
T ss_dssp TTTHHHHHHHHHTTCSEEEEEECTTCCHHHHHHHHHHHHHTTEE-EEECSSSSCCHHHHHHHTTCSCSSTTSSSCCCCTT
T ss_pred HHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHHhcCcE-EEEeHHHHHHHHHhhCccccccccHHHHhhhcCCC
Confidence 44599999999999999999999999999999999999999999 99999999999999987 99999999999
Q ss_pred eEEEEcCC-c--hHHHHHHHHhhCCCeEEEEEEEcCeecCHHHHHHh
Q psy9196 152 EAIIVSPE-A--KVDVLLKTLKKTPQLTLMATIVDNRLLSKTETEMY 195 (362)
Q Consensus 152 TAIafS~e-p--~aK~llkf~Kk~pkL~LkGGiVEGkvLs~~eI~~L 195 (362)
++|+|+++ | .+|.+.+|. .+.+...|++.+..+.-+.+-..+
T Consensus 87 ~al~Ft~~dp~~vak~l~~f~--~~~~ar~Gaia~~dv~ip~g~~~~ 131 (284)
T 3a1y_G 87 AGILVTNMNPFKLYKFLQQNR--QPAPAKPGAVVPKDVVVPAGPTPL 131 (284)
T ss_dssp EEEEEESSCHHHHHHHHHHCC--CC----------------------
T ss_pred EEEEEECCCHHHHHHHHHHhc--chhhhhcCCccceeEEecCCCCCC
Confidence 99999965 4 345555543 578899999999999888776444
No 5
>1vq8_G Acidic ribosomal protein P0 homolog; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: j.84.1.1 PDB: 1k73_I* 1k8a_I* 1k9m_I* 1kc8_I* 1kd1_I* 1kqs_G* 1m1k_I* 1m90_I* 1n8r_I* 1nji_I* 1q7y_I* 1q81_I* 1q82_I* 1q86_I* 1qvf_G 1qvg_G 1s72_G* 1vq4_G* 1vq5_G* 1vq6_G* ...
Probab=99.65 E-value=2.9e-17 Score=161.71 Aligned_cols=119 Identities=9% Similarity=0.088 Sum_probs=26.7
Q ss_pred cchHHHHHHHHHHHHHhcCCeEEEEecCCCcHHHHHHHHHHHHHcCCeeEEEechhHHHHHHhcCC--CCCCcCccccce
Q psy9196 75 ENIFQNILAKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRATIEKALTNTK--YISIMPLFKVSE 152 (362)
Q Consensus 75 ~npy~~iLv~El~e~f~~Sk~I~V~~y~GLtVed~~~LR~~LRk~gi~~~KV~KNtL~r~ALe~T~--~e~L~plF~GpT 152 (362)
....+..++++|++.|++++.++|++|+||++.++++||++||+. +. |+|+||||||+|+++++ |+.|.++|+|||
T Consensus 12 ~~e~K~~~V~eL~e~l~~~~~v~vvdy~GLtv~ql~~LR~~lR~~-~~-~~V~KNTL~r~Al~~~~~~le~L~~~LkG~t 89 (348)
T 1vq8_G 12 IPEWKQEEVDAIVEMIESYESVGVVNIAGIPSRQLQDMRRDLHGT-AE-LRVSRNTLLERALDDVDDGLEDLNGYITGQV 89 (348)
T ss_dssp CCHHHHHHHHHHHHHHHC-----------------------------------CHHHHHHHHTC----------------
T ss_pred cHHHHHHHHHHHHHHHHhCCEEEEEECCCCCHHHHHHHHHHHHhc-ce-EEEeHHHHHHHHHHhCCcchHHHHHhccCCE
Confidence 446788899999999999999999999999999999999999998 89 99999999999999999 899999999999
Q ss_pred EEEEcCC-c--hHHHHHHHHhhCCCeEEEEEEEcCeecCHHHHHHhcC
Q psy9196 153 AIIVSPE-A--KVDVLLKTLKKTPQLTLMATIVDNRLLSKTETEMYAT 197 (362)
Q Consensus 153 AIafS~e-p--~aK~llkf~Kk~pkL~LkGGiVEGkvLs~~eI~~LAk 197 (362)
+|+|+++ | .+|.+.+|.+ +.+...|++.++.++-+.+...+.-
T Consensus 90 al~Ft~~Dp~~vaK~l~~f~~--~~pAr~GaiAp~dV~IpaG~t~~~P 135 (348)
T 1vq8_G 90 GLIGTDDNPFSLFQELEASKT--PAPIGAGEVAPNDIVIPEGDTGVDP 135 (348)
T ss_dssp ------------------------------------------------
T ss_pred EEEEeCCCHHHHHHHHHHhcc--cchhhcCCcCCceEEeCCCCCCCCC
Confidence 9999964 5 5577777754 5667899999999999988866644
No 6
>3jsy_A Acidic ribosomal protein P0 homolog; ribonucleoprotein; 1.60A {Methanocaldococcus jannaschii}
Probab=99.59 E-value=1.8e-15 Score=139.57 Aligned_cols=89 Identities=18% Similarity=0.199 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEecCCCcHHHHHHHHHHHHHcCCeeEEEechhHHHHHHhcC-------CCCCCcCcccc
Q psy9196 78 FQNILAKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRATIEKALTNT-------KYISIMPLFKV 150 (362)
Q Consensus 78 y~~iLv~El~e~f~~Sk~I~V~~y~GLtVed~~~LR~~LRk~gi~~~KV~KNtL~r~ALe~T-------~~e~L~plF~G 150 (362)
.+..++++|++.|++++.++|++|.||+++++++||++||.. .. |+|+||||||+|++++ +|+.|.++|+|
T Consensus 4 ~K~~~v~el~e~l~~~~~v~v~~~~gl~~~ql~~lR~~lr~~-~~-~~v~KNtL~r~Al~~~~~~e~~~~~~~L~~~l~G 81 (213)
T 3jsy_A 4 WKIEEVKTLKGLIKSKPVVAIVDMMDVPAPQLQEIRDKIRDK-VK-LRMSRNTLIIRALKEAAEELNNPKLAELANYVER 81 (213)
T ss_dssp HHHHHHHHHHHHHHHSSEEEEEECCSCCHHHHHHHHHHHTTT-EE-EEECCHHHHHHHHHHHHHHTTCGGGGGGGGGCCS
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHhCC-CE-EEEEeHHHHHHHHhhchhhhcccchhHHHHhCcC
Confidence 355699999999999999999999999999999999999976 48 9999999999999999 89999999999
Q ss_pred ceEEEEcCCc--h-HHHHHHH
Q psy9196 151 SEAIIVSPEA--K-VDVLLKT 168 (362)
Q Consensus 151 pTAIafS~ep--~-aK~llkf 168 (362)
+++|+|++++ . ++.+.++
T Consensus 82 ~~~l~Ft~~dp~~v~k~l~~~ 102 (213)
T 3jsy_A 82 GAAILVTDMNPFKLYKLLEEN 102 (213)
T ss_dssp SEEEEEESSCHHHHHHHHHHS
T ss_pred CeEEEEeCCCHHHHHHHHHHc
Confidence 9999999764 3 3444444
No 7
>3j21_k Acidic ribosomal protein P0 homolog; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.55 E-value=3.2e-15 Score=146.58 Aligned_cols=88 Identities=16% Similarity=0.157 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHhcCCeEEEEecCCCcHHHHHHHHHHHHHcCCeeEEEechhHHHHHHhcC-------CCCCCcCccccce
Q psy9196 80 NILAKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRATIEKALTNT-------KYISIMPLFKVSE 152 (362)
Q Consensus 80 ~iLv~El~e~f~~Sk~I~V~~y~GLtVed~~~LR~~LRk~gi~~~KV~KNtL~r~ALe~T-------~~e~L~plF~GpT 152 (362)
..++++|++.|++++.++|++|.||++.++++||++||..|+. |+|+||||||+|++++ +|+.|.++|+|++
T Consensus 9 ~~~v~el~e~l~~~~~v~v~~~~gl~v~ql~~lR~~lr~~g~~-~~v~KNtL~r~Al~~~~~~e~~~~l~~L~~~L~G~~ 87 (339)
T 3j21_k 9 KKEVEELANLIKSYPVVALVDVSSMPAYPLSQMRRLIRENNGL-LRVSRNTLIELAIKKVAQELGKPELEKLINYIEGGA 87 (339)
T ss_dssp TTHHHHHHHHHHHSSEEEEEECTTCCTTHHHHHHHHHHHTTEE-EECCHHHHSCHHHHHHHSSCCCSSSSSSSCCCCTTE
T ss_pred HHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHhcCCeE-EEEEhHHHHHHHHhcChhhhccccHHHHHHHhcCCe
Confidence 3489999999999999999999999999999999999999999 9999999999999988 6899999999999
Q ss_pred EEEEcCC-c--hHHHHHHH
Q psy9196 153 AIIVSPE-A--KVDVLLKT 168 (362)
Q Consensus 153 AIafS~e-p--~aK~llkf 168 (362)
+|+|+++ | .+|.|.+|
T Consensus 88 ~l~Ft~~dp~~v~k~l~~~ 106 (339)
T 3j21_k 88 GILVTTMNPFKLYKFLQQN 106 (339)
T ss_dssp EEEEESSCHHHHHHHHHHS
T ss_pred EEEEECCCHHHHHHHHHHc
Confidence 9999975 4 34444444
No 8
>3u5i_q A0, L10E, 60S acidic ribosomal protein P0; translation, ribosome, ribosomal R ribosomal protein, STM1; 3.00A {Saccharomyces cerevisiae} PDB: 4b6a_q 3izc_s 3izs_s 3j16_G* 3o5h_M 3jyw_8
Probab=99.54 E-value=1.7e-14 Score=140.20 Aligned_cols=111 Identities=9% Similarity=0.160 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEecCCCcHHHHHHHHHHHHHcCCeeEEEechhHHHHHHhc-----CCCCCCcCccccce
Q psy9196 78 FQNILAKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRATIEKALTN-----TKYISIMPLFKVSE 152 (362)
Q Consensus 78 y~~iLv~El~e~f~~Sk~I~V~~y~GLtVed~~~LR~~LRk~gi~~~KV~KNtL~r~ALe~-----T~~e~L~plF~GpT 152 (362)
-+..++++|++.|++++.++|++|.||++.++++||++||+.+ . |+|+||||||+|+++ ++|+.|.++|+|++
T Consensus 7 ~K~~~v~el~e~l~~~~~v~vv~~~gl~v~ql~~LR~~lR~~~-~-~~V~KNTL~r~Al~~~~~~~~~le~L~~~L~G~~ 84 (312)
T 3u5i_q 7 KKAEYFAKLREYLEEYKSLFVVGVDNVSSQQMHEVRKELRGRA-V-VLMGKNTMVRRAIRGFLSDLPDFEKLLPFVKGNV 84 (312)
T ss_dssp HHHHHHHHHHHHHHHCSEEEEEECSSCCHHHHHHHHHHHSSSC-E-EEECCHHHHHHHHHTTSSSSCGGGGTGGGCCSSE
T ss_pred HHHHHHHHHHHHHHhCCEEEEEecCCCCHHHHHHHHHHHhcCc-e-EEEeehHHHHHHHhhCcccccChHHHHHhccCCE
Confidence 3566999999999999999999999999999999999999887 6 889999999999999 57899999999999
Q ss_pred EEEEcCCc--h-HHHHHHHHhhCCCeEEEEEEEcCeecCHHHH
Q psy9196 153 AIIVSPEA--K-VDVLLKTLKKTPQLTLMATIVDNRLLSKTET 192 (362)
Q Consensus 153 AIafS~ep--~-aK~llkf~Kk~pkL~LkGGiVEGkvLs~~eI 192 (362)
+|+|++++ . +|.|.+|. .+..-..|.+..-.+.=+.+-
T Consensus 85 gl~Ft~~dp~~v~k~l~~~k--~~~pAr~GaiAp~dV~Ip~G~ 125 (312)
T 3u5i_q 85 GFVFTNEPLTEIKNVIVSNR--VAAPARAGAVAPEDIWVRAVN 125 (312)
T ss_dssp EEEEESSCHHHHHHHHHTSS--CCC------------------
T ss_pred EEEEECCCHHHHHHHHHhcc--CcccccCCCcCCceEEECCCC
Confidence 99999764 2 23333332 245566777777666555444
No 9
>2zkr_g 60S acidic ribosomal protein P0; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=99.50 E-value=1.6e-15 Score=147.60 Aligned_cols=108 Identities=11% Similarity=0.153 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEecCCCcHHHHHHHHHHHHHcCCeeEEEechhHHHHHHhcC-----CCCCCcCccccce
Q psy9196 78 FQNILAKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRATIEKALTNT-----KYISIMPLFKVSE 152 (362)
Q Consensus 78 y~~iLv~El~e~f~~Sk~I~V~~y~GLtVed~~~LR~~LRk~gi~~~KV~KNtL~r~ALe~T-----~~e~L~plF~GpT 152 (362)
.+..++++|++.|++++.++|++|.||++.++++||++||.. +. |+|+||||||+||+++ +|+.|.++|+|++
T Consensus 9 ~K~~~V~eL~e~l~~~~~v~vvd~~gl~v~ql~~LR~~lR~~-~~-~~V~KNTL~r~Al~~~~~~~~~~e~L~~~L~G~~ 86 (317)
T 2zkr_g 9 WKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGK-AV-VLMGKNTMMRKAIRGHLENNPALEKLLPHIRGNV 86 (317)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhCCEEEEEECCCCCHHHHHHHHHHHhcC-cE-EEEEeHHHHHHHHhhCcccccchhhhhhccCCCE
Confidence 355699999999999999999999999999999999999987 68 9999999999999999 8999999999999
Q ss_pred EEEEcCC-c--hHHHHHHHHhhCCCeEEEEEEEcCeecCH
Q psy9196 153 AIIVSPE-A--KVDVLLKTLKKTPQLTLMATIVDNRLLSK 189 (362)
Q Consensus 153 AIafS~e-p--~aK~llkf~Kk~pkL~LkGGiVEGkvLs~ 189 (362)
+|+|+++ | .+|.+.+|.. +.....|.+....++=+
T Consensus 87 al~Ft~~Dp~~vaK~l~~f~~--~~pAr~GaiAp~dV~Ip 124 (317)
T 2zkr_g 87 GFVFTKEDLTEIRDMLLANKV--PAAARAGAIAPCEVTVP 124 (317)
T ss_dssp ----------------------------------------
T ss_pred EEEEECCCHHHHHHHHHHhCc--cchhccCCcCCceEEeC
Confidence 9999965 4 4566666643 33344555555544433
No 10
>3iz5_s 60S acidic ribosomal protein P0 (L10P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_s
Probab=99.49 E-value=1.9e-14 Score=140.19 Aligned_cols=88 Identities=11% Similarity=0.159 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCCCcHHHHHHHHHHHHHcCCeeEEEechhHHHHHHhcC-------CCCCCcCccccc
Q psy9196 79 QNILAKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRATIEKALTNT-------KYISIMPLFKVS 151 (362)
Q Consensus 79 ~~iLv~El~e~f~~Sk~I~V~~y~GLtVed~~~LR~~LRk~gi~~~KV~KNtL~r~ALe~T-------~~e~L~plF~Gp 151 (362)
+..++++|++.|++++.++|++|.||++.++++||++||.. +. |+|+||||||+|++++ +|+.|.++|+|+
T Consensus 11 K~~~v~el~e~l~~y~~v~vv~~~gl~v~ql~~LR~~lR~~-~~-~~V~KNTL~r~Al~~~~e~~~~~~le~L~~~L~G~ 88 (319)
T 3iz5_s 11 KVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGD-SI-VLMGKNTLIRRCIKVHADNTGNKEFLELMPLLVGN 88 (319)
T ss_dssp SSHHHHHHHHHHHHCSEEEEEECTTSCHHHHHHHHHHHHHH-SC-EECCSTTTCCHHHHHHHSSSCCSSSSSSSCCCCTT
T ss_pred HHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHhCC-cE-EEEEhHHHHHHHHhhchhhhccccHHHHHHHhcCC
Confidence 34599999999999999999999999999999999999974 68 9999999999999987 799999999999
Q ss_pred eEEEEcCC-c-h-HHHHHHH
Q psy9196 152 EAIIVSPE-A-K-VDVLLKT 168 (362)
Q Consensus 152 TAIafS~e-p-~-aK~llkf 168 (362)
++|+|+++ | . ++.|.++
T Consensus 89 ~gl~FT~~dp~~v~k~l~~~ 108 (319)
T 3iz5_s 89 VGLIFTKGDLKEVREEVAKY 108 (319)
T ss_dssp EEEEEESSCHHHHHHHHHHS
T ss_pred eEEEEECCChHHHHHHHHHc
Confidence 99999976 4 3 3444443
No 11
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=58.29 E-value=19 Score=29.15 Aligned_cols=42 Identities=12% Similarity=0.105 Sum_probs=32.4
Q ss_pred HHHhcCCeEEEEecCCCcHHHHHHHHHHHHHcCCeeEEEechh
Q psy9196 88 ARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRA 130 (362)
Q Consensus 88 e~f~~Sk~I~V~~y~GLtVed~~~LR~~LRk~gi~~~KV~KNt 130 (362)
.-+.++.--+|+-.+|-+.+|..++.++.++.|+. |.|.|.+
T Consensus 45 ksmkdngkplvvfvngasqndvnefqneakkegvs-ydvlkst 86 (112)
T 2lnd_A 45 KSMKDNGKPLVVFVNGASQNDVNEFQNEAKKEGVS-YDVLKST 86 (112)
T ss_dssp HHHTTCCSCEEEEECSCCHHHHHHHHHHHHHHTCE-EEEEECC
T ss_pred HHHHhcCCeEEEEecCcccccHHHHHHHHHhcCcc-hhhhccC
Confidence 33444433344446899999999999999999999 9999865
No 12
>1sbo_A Putative anti-sigma factor antagonist TM1442; open sandwich, JCSG, structural genomics, joint center for structural genomics, PSI; NMR {Thermotoga maritima} SCOP: c.13.2.1 PDB: 1t6r_A* 1vc1_A
Probab=55.00 E-value=48 Score=24.90 Aligned_cols=66 Identities=14% Similarity=0.042 Sum_probs=48.1
Q ss_pred HHHHHHHHHhcCC-eEEEEecCCCcH------HHHHHHHHHHHHcCCeeEEEec-hhHHHHHHhcCCCCCCcCcc
Q psy9196 82 LAKEILARFEESQ-MIAIVHRSSMLA------EVNREVKVVFKRVGMTMLDRYG-RATIEKALTNTKYISIMPLF 148 (362)
Q Consensus 82 Lv~El~e~f~~Sk-~I~V~~y~GLtV------ed~~~LR~~LRk~gi~~~KV~K-NtL~r~ALe~T~~e~L~plF 148 (362)
+.+.+.+.+.... -.+++|..+++. .-+..+++++++.|+. +.+.. |.-++..|+-+++..+.++|
T Consensus 31 l~~~l~~~~~~~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~-l~l~~~~~~v~~~l~~~gl~~~~~i~ 104 (110)
T 1sbo_A 31 LKEQLRNFISTTSKKKIVLDLSSVSYMDSAGLGTLVVILKDAKINGKE-FILSSLKESISRILKLTHLDKIFKIT 104 (110)
T ss_dssp HHHHHHTHHHHCSCSEEEEECTTCCCBCHHHHHHHHHHHHHHHHTTCE-EEEESCCHHHHHHHHHTTCGGGSCBC
T ss_pred HHHHHHHHHhcCCCcEEEEECCCCcEEccHHHHHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHhCccceeecc
Confidence 3445555555443 367999999876 4467788899999999 77765 77888889988887665543
No 13
>2ka5_A Putative anti-sigma factor antagonist TM_1081; termotoga marithima, phosphoprotein, structural GENO PSI-2, protein structure initiative; NMR {Thermotoga maritima} PDB: 3f43_A*
Probab=48.66 E-value=58 Score=25.94 Aligned_cols=63 Identities=13% Similarity=0.081 Sum_probs=46.6
Q ss_pred HHHHHHH-HHhcCCeEEEEecCCCcH------HHHHHHHHHHHHcCCeeEEEec-hhHHHHHHhcCCCCCCc
Q psy9196 82 LAKEILA-RFEESQMIAIVHRSSMLA------EVNREVKVVFKRVGMTMLDRYG-RATIEKALTNTKYISIM 145 (362)
Q Consensus 82 Lv~El~e-~f~~Sk~I~V~~y~GLtV------ed~~~LR~~LRk~gi~~~KV~K-NtL~r~ALe~T~~e~L~ 145 (362)
+.+.+.+ .+....-.+|+|..+++. .-+..+++++++.|+. +.++. +.-++..|+-+++..+.
T Consensus 39 l~~~l~~~~~~~~~~~vvlDls~V~~iDSsGl~~L~~~~~~~~~~g~~-l~l~~~~~~v~~~l~~~gl~~~~ 109 (125)
T 2ka5_A 39 FKKWVFDEFLNKGYNKIFLVLSDVESIDSFSLGVIVNILKSISSSGGF-FALVSPNEKVERVLSLTNLDRIV 109 (125)
T ss_dssp HHHHHHHHTTTTTCCEEEEECTTCSCCCHHHHHHHHHHHHHHHHHTCE-EEEECCCHHHHHHHHHTTSTTTS
T ss_pred HHHHHHHHHhhCCCCEEEEECCCCCEEcHHHHHHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHcCCCceE
Confidence 4555555 555444578999999876 4456778899999999 87775 77888889888876554
No 14
>4hyl_A Stage II sporulation protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 1.75A {Haliangium ochraceum}
Probab=42.34 E-value=23 Score=27.54 Aligned_cols=62 Identities=13% Similarity=0.088 Sum_probs=46.0
Q ss_pred HHHHHHHHHhcCCeEEEEecCCCcH------HHHHHHHHHHHHcCCeeEEEec-hhHHHHHHhcCCCCCCc
Q psy9196 82 LAKEILARFEESQMIAIVHRSSMLA------EVNREVKVVFKRVGMTMLDRYG-RATIEKALTNTKYISIM 145 (362)
Q Consensus 82 Lv~El~e~f~~Sk~I~V~~y~GLtV------ed~~~LR~~LRk~gi~~~KV~K-NtL~r~ALe~T~~e~L~ 145 (362)
+.+.+.+.+.... .+|+|..+++. .-+..+++++++.|.. +.++. +.-++..|+-+++..+.
T Consensus 31 l~~~l~~~~~~~~-~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~-l~l~~~~~~v~~~l~~~gl~~~~ 99 (117)
T 4hyl_A 31 VQAAVLPRVTAKG-KMILDLREVSYMSSAGLRVLLSLYRHTSNQQGA-LVLVGVSEEIRDTMEITGFWNFF 99 (117)
T ss_dssp HHHHHGGGCCTTC-EEEEEEEEEEEECHHHHHHHHHHHHHHHHTTCE-EEEECCCHHHHHHHHHHTCGGGC
T ss_pred HHHHHHHHHccCC-eEEEECCCCcEEcHHHHHHHHHHHHHHHHcCCE-EEEEeCCHHHHHHHHHhCcccee
Confidence 4455555566666 88899888874 5567788999999999 77775 77788888888765443
No 15
>1zav_A 50S ribosomal protein L10; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: d.58.62.1 PDB: 1zaw_A 1zax_A
Probab=37.43 E-value=33 Score=30.03 Aligned_cols=28 Identities=21% Similarity=0.184 Sum_probs=21.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy9196 199 NLATQQALLVQTISSVATSLTSQLNHHS 226 (362)
Q Consensus 199 SlEeL~AqLvg~LqsPasqLvs~Lqa~~ 226 (362)
.+..-..+|+++|+++.++++++|+++.
T Consensus 148 ~l~ap~~~l~~~l~~~~~~l~~~l~a~~ 175 (180)
T 1zav_A 148 RVKAPITGLVFALSGILRNLVYVLNAIK 175 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567888899999999998888764
No 16
>2j01_J 50S ribosomal protein L10; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} PDB: 2j03_J 3d5b_J 3d5d_J 3i8i_Y 3kir_J 3kit_J 3kiw_J 3kiy_J 3mrz_I 3ms1_I 3pyt_I 3pyr_I 3pyo_I 3pyv_I
Probab=36.83 E-value=32 Score=29.92 Aligned_cols=27 Identities=30% Similarity=0.299 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy9196 200 LATQQALLVQTISSVATSLTSQLNHHS 226 (362)
Q Consensus 200 lEeL~AqLvg~LqsPasqLvs~Lqa~~ 226 (362)
+..-..+|+++|+++.++++++|+++.
T Consensus 142 l~ap~~~~~~~l~~~~~~l~~~l~a~~ 168 (173)
T 2j01_J 142 LQAPMAELVGVLGGVARELVGILEAYA 168 (173)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 334456677777777777777776654
No 17
>1th8_B Anti-sigma F factor antagonist; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: c.13.2.1 PDB: 1thn_B* 1tid_B* 1til_B* 1auz_A 1buz_A
Probab=34.43 E-value=55 Score=24.86 Aligned_cols=62 Identities=11% Similarity=0.106 Sum_probs=44.2
Q ss_pred HHHHHHHHHhcC-CeEEEEecCCCcH------HHHHHHHHHHHHcCCeeEEEec-hhHHHHHHhcCCCCCC
Q psy9196 82 LAKEILARFEES-QMIAIVHRSSMLA------EVNREVKVVFKRVGMTMLDRYG-RATIEKALTNTKYISI 144 (362)
Q Consensus 82 Lv~El~e~f~~S-k~I~V~~y~GLtV------ed~~~LR~~LRk~gi~~~KV~K-NtL~r~ALe~T~~e~L 144 (362)
+.+.+.+.+... .-.+++|..+++. .-+..+++++++.|+. +.+.. +.-++..++-+++..+
T Consensus 30 l~~~l~~~~~~~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~-l~l~~~~~~v~~~l~~~gl~~~ 99 (116)
T 1th8_B 30 LREQVTDVLENRAIRHIVLNLGQLTFMDSSGLGVILGRYKQIKNVGGQ-MVVCAVSPAVKRLFDMSGLFKI 99 (116)
T ss_dssp HHHHHHHHHHSSCCCEEEEEEEEEEEECHHHHHHHHHHHHHHHHTTCC-EEEESCCHHHHHHHHHHTGGGT
T ss_pred HHHHHHHHHhcCCCcEEEEECCCCcEEccHHHHHHHHHHHHHHHhCCe-EEEEeCCHHHHHHHHHhCCcee
Confidence 455566666543 3466888887764 4467788999999999 77775 7777888887776544
No 18
>3t6o_A Sulfate transporter/antisigma-factor antagonist S; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.10A {Planctomyces limnophilus}
Probab=33.11 E-value=85 Score=24.56 Aligned_cols=63 Identities=11% Similarity=0.004 Sum_probs=46.2
Q ss_pred HHHHHHHHHh-cCCeEEEEecCCCcH------HHHHHHHHHHHH-cCCeeEEEec-hhHHHHHHhcCCCCCCc
Q psy9196 82 LAKEILARFE-ESQMIAIVHRSSMLA------EVNREVKVVFKR-VGMTMLDRYG-RATIEKALTNTKYISIM 145 (362)
Q Consensus 82 Lv~El~e~f~-~Sk~I~V~~y~GLtV------ed~~~LR~~LRk-~gi~~~KV~K-NtL~r~ALe~T~~e~L~ 145 (362)
+.+.+.+.+. ...-.+|+|..+++. .-+..+++++++ .|+. +.++. +.-++..|+-+++..+.
T Consensus 35 l~~~l~~~l~~~~~~~vvlDls~v~~iDSsGl~~L~~~~~~~~~~~g~~-l~l~~~~~~v~~~l~~~gl~~~~ 106 (121)
T 3t6o_A 35 IASTFLAAMQGAQPRKVLIDLEGVEFFGSSFIELLVRGWKRIKEDQQGV-FALCSVSPYCVEVLQVTHIDEVW 106 (121)
T ss_dssp HHHHHHHTTCCSSSCEEEEECTTCCEECHHHHHHHHHHHHHHTTSTTCE-EEEESCCHHHHHHHTTCSGGGGS
T ss_pred HHHHHHHHHhhcCCCeEEEECCCCCEEcHHHHHHHHHHHHHHHHhcCCE-EEEEeCCHHHHHHHHHhCcccee
Confidence 4445555553 344579999999986 445677788999 9999 77774 78888999988876544
No 19
>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*
Probab=25.16 E-value=33 Score=33.75 Aligned_cols=76 Identities=12% Similarity=0.170 Sum_probs=46.6
Q ss_pred eEEEEecCCCcHHHHHHHHHHHHHcCCeeEEEechhHHHHHHhcCCCCCCcCccccceEEEEcCC---c-hHHHHHHHHh
Q psy9196 95 MIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRATIEKALTNTKYISIMPLFKVSEAIIVSPE---A-KVDVLLKTLK 170 (362)
Q Consensus 95 ~I~V~~y~GLtVed~~~LR~~LRk~gi~~~KV~KNtL~r~ALe~T~~e~L~plF~GpTAIafS~e---p-~aK~llkf~K 170 (362)
-|+|+|| |++ ..+-+.|++.|+. +.|+++..--.-+.. ..+.+|+++.. | .....+++++
T Consensus 192 ~V~viD~-G~k----~ni~r~L~~~G~~-v~vvp~~~~~e~i~~----------~~~DGliLsGGPgdp~~~~~~~~~Ir 255 (379)
T 1a9x_B 192 HVVAYDF-GAK----RNILRMLVDRGCR-LTIVPAQTSAEDVLK----------MNPDGIFLSNGPGDPAPCDYAITAIQ 255 (379)
T ss_dssp EEEEEES-SCC----HHHHHHHHHTTEE-EEEEETTCCHHHHHT----------TCCSEEEECCCSBCSTTCHHHHHHHH
T ss_pred EEEEEEC-CCh----HHHHHHHHHCCCE-EEEEeccCCHHHHhh----------cCCCEEEEeCCCCChHHHHHHHHHHH
Confidence 5899999 887 4477788899999 999987521111111 13567888643 2 2334444444
Q ss_pred hC--CCeEEEEEEEcCee
Q psy9196 171 KT--PQLTLMATIVDNRL 186 (362)
Q Consensus 171 k~--pkL~LkGGiVEGkv 186 (362)
+. ..+.|+|=|+.-++
T Consensus 256 ~~~~~~~PILGIClG~QL 273 (379)
T 1a9x_B 256 KFLETDIPVFGICLGHQL 273 (379)
T ss_dssp HHTTSCCCEEEETHHHHH
T ss_pred HHHHcCCCEEEECchHHH
Confidence 32 14788888875433
No 20
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=22.64 E-value=2e+02 Score=25.43 Aligned_cols=91 Identities=9% Similarity=0.119 Sum_probs=50.4
Q ss_pred HHHHHHHHHhcCCeEEEEecCC-C-cHHHHHHHHHHHHHcCCeeEEEechhHHHHHHhcCCCCCCcCccccceEEEEcCC
Q psy9196 82 LAKEILARFEESQMIAIVHRSS-M-LAEVNREVKVVFKRVGMTMLDRYGRATIEKALTNTKYISIMPLFKVSEAIIVSPE 159 (362)
Q Consensus 82 Lv~El~e~f~~Sk~I~V~~y~G-L-tVed~~~LR~~LRk~gi~~~KV~KNtL~r~ALe~T~~e~L~plF~GpTAIafS~e 159 (362)
.++.|.+.+-..+-|+|+.-.. . ...-...+|..|+++|+. +...-- .. .+..+..+..++.+++||++..|
T Consensus 129 ~~~~l~~~~Pg~~~I~~i~~~~~~~~~~r~~g~~~al~~~gi~-~~~~~~--~~---~~~~~~~~~~l~~~~dai~~~~D 202 (302)
T 2qh8_A 129 HVELIKEILPNVKSIGVVYNPGEANAVSLMELLKLSAAKHGIK-LVEATA--LK---SADVQSATQAIAEKSDVIYALID 202 (302)
T ss_dssp HHHHHHHHSTTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTCE-EEEEEC--SS---GGGHHHHHHHHGGGCSEEEECSC
T ss_pred HHHHHHHhCCCCcEEEEEecCCCcchHHHHHHHHHHHHHcCCE-EEEEec--CC---hHHHHHHHHHHhccCCEEEECCc
Confidence 4466666664455455544332 2 233456788899999998 643311 00 01112223344568999998887
Q ss_pred c----hHHHHHHHHhhCCCeEEEE
Q psy9196 160 A----KVDVLLKTLKKTPQLTLMA 179 (362)
Q Consensus 160 p----~aK~llkf~Kk~pkL~LkG 179 (362)
. ..+.+.+...+ ..+.+.|
T Consensus 203 ~~a~g~~~~l~~~~~~-~~i~vig 225 (302)
T 2qh8_A 203 NTVASAIEGMIVAANQ-AKTPVFG 225 (302)
T ss_dssp HHHHTTHHHHHHHHHH-TTCCEEE
T ss_pred HhHHHHHHHHHHHHHH-cCCCEEE
Confidence 5 34556665544 4566655
No 21
>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate, antisigma factor antagonist, ensemble structures, transport protein; NMR {Mycobacterium bovis}
Probab=22.26 E-value=2.6e+02 Score=21.99 Aligned_cols=64 Identities=8% Similarity=0.187 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHhc---CCeEEEEecCCCcH------HHHHHHHHHHHHcCCeeEEEec-hhHHHHHHhcCCCCC
Q psy9196 79 QNILAKEILARFEE---SQMIAIVHRSSMLA------EVNREVKVVFKRVGMTMLDRYG-RATIEKALTNTKYIS 143 (362)
Q Consensus 79 ~~iLv~El~e~f~~---Sk~I~V~~y~GLtV------ed~~~LR~~LRk~gi~~~KV~K-NtL~r~ALe~T~~e~ 143 (362)
-..+.+.|.+++.. ..-.+|++..+++. .-+..+.+++++.|+. +.+.. +.-++..|+.+++..
T Consensus 30 a~~~~~~l~~~~~~~~~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~-l~l~~~~~~v~~~l~~~gl~~ 103 (130)
T 2kln_A 30 AEDFRRRALTVVDQDPGQVEWFVLNAESNVEVDLTALDALDQLRTELLRRGIV-FAMARVKQDLRESLRAASLLD 103 (130)
T ss_dssp HHHHHHHHHHHTTSSSSCCEEEEEECSCCSSSBCSTTTHHHHHHHHHHTTTEE-EEEECCSSHHHHHHHHCTTHH
T ss_pred HHHHHHHHHHHHhcCCCCceEEEEECCCCChhhHHHHHHHHHHHHHHHHCCCE-EEEEcCCHHHHHHHHHcCChh
Confidence 44566677777765 34578899988874 6678899999999999 66654 667788888887654
No 22
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=20.86 E-value=4e+02 Score=22.82 Aligned_cols=108 Identities=6% Similarity=-0.089 Sum_probs=60.7
Q ss_pred ccchHHHHHHHHHHHHHhcCCeEEEEecCCCcHHHHHHHHHHHHHcCCeeEEEech------hHHHHHHh-cCCCCCCcC
Q psy9196 74 EENIFQNILAKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGR------ATIEKALT-NTKYISIMP 146 (362)
Q Consensus 74 e~npy~~iLv~El~e~f~~Sk~I~V~~y~GLtVed~~~LR~~LRk~gi~~~KV~KN------tL~r~ALe-~T~~e~L~p 146 (362)
..|+|-..+++.+.+.+++..+-+++....-+.++...+-..|...++.-+-+... .+++.+.+ +.++-.+..
T Consensus 15 ~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~ 94 (291)
T 3l49_A 15 TDHDWDLKAYQAQIAEIERLGGTAIALDAGRNDQTQVSQIQTLIAQKPDAIIEQLGNLDVLNPWLQKINDAGIPLFTVDT 94 (291)
T ss_dssp CSSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHCCSEEEEESSCHHHHHHHHHHHHHTTCCEEEESC
T ss_pred CCChHHHHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHHHHHCCCcEEEecC
Confidence 46788888889999999888766666665666666555666676777773344443 23333332 444433333
Q ss_pred ccccceEEEEcCCc-hH----HHHHHHHhhCCCeEEEEEE
Q psy9196 147 LFKVSEAIIVSPEA-KV----DVLLKTLKKTPQLTLMATI 181 (362)
Q Consensus 147 lF~GpTAIafS~ep-~a----K~llkf~Kk~pkL~LkGGi 181 (362)
...+....+..++. .. +.|++.++.+.++.+++|.
T Consensus 95 ~~~~~~~~V~~D~~~~g~~~~~~l~~~~~g~~~i~~i~~~ 134 (291)
T 3l49_A 95 ATPHAINNTTSNNYSIGAELALQMVADLGGKGNVLVFNGF 134 (291)
T ss_dssp CCTTCSEEEEECHHHHHHHHHHHHHHHHTTCEEEEEECSC
T ss_pred CCCCcCceEecChHHHHHHHHHHHHHHcCCCceEEEEeCC
Confidence 33333444444432 33 4444444455566666554
No 23
>1wn2_A Peptidyl-tRNA hydrolase; riken structural genomics/proteomics initiative, structural genomics; 1.20A {Pyrococcus horikoshii} PDB: 2d3k_A
Probab=20.56 E-value=3.5e+02 Score=22.12 Aligned_cols=62 Identities=21% Similarity=0.198 Sum_probs=42.7
Q ss_pred HHHHHHHhcCCeEEEEecCCCcHHHHHHHHHHHHHcCCeeEEEechhHHHHHHhcCCCCCCcCccccceEEEEcCC
Q psy9196 84 KEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRATIEKALTNTKYISIMPLFKVSEAIIVSPE 159 (362)
Q Consensus 84 ~El~e~f~~Sk~I~V~~y~GLtVed~~~LR~~LRk~gi~~~KV~KNtL~r~ALe~T~~e~L~plF~GpTAIafS~e 159 (362)
+.++.|.....-.+|+.-. +.+++..|..+++..|+. +.++... ++..+.| --.|++++++.
T Consensus 45 ~~~~~W~~~g~~Kvvlk~~--~e~el~~l~~~a~~~gl~-~~~i~DA---------G~Tei~~--gt~TvlaigP~ 106 (121)
T 1wn2_A 45 EWFEAWFREGQKKVVVKVE--SEEELFKLKAEAEKLGLP-NALIRDA---------GLTEIPP--GTVTVLAVGPA 106 (121)
T ss_dssp HHHHHHHHTTCCEEEEEES--SHHHHHHHHHHHHHTTCC-EEEEECT---------TCTTSCT--TCEEEEEEEEE
T ss_pred HHHHHHHHCCCcEEEEecC--CHHHHHHHHHHHHHCCCC-EEEEEcC---------CccccCC--CCEEEEEeccC
Confidence 4567777666555555443 578999999999999999 8877654 4444433 23588888654
No 24
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=20.49 E-value=3.8e+02 Score=27.75 Aligned_cols=91 Identities=11% Similarity=0.097 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhcC----C--eEEEEecCCCcHHHHHHHHHHHHHcCCeeEEEech----------hHHHHHHhcCCCCCC
Q psy9196 81 ILAKEILARFEES----Q--MIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGR----------ATIEKALTNTKYISI 144 (362)
Q Consensus 81 iLv~El~e~f~~S----k--~I~V~~y~GLtVed~~~LR~~LRk~gi~~~KV~KN----------tL~r~ALe~T~~e~L 144 (362)
.|.+-|..++... . -|+|+|..+-...+...+...+...+-. ++++.| .-++.|....
T Consensus 194 ~L~~~L~SL~~qt~~~~~~~EIIVVDNgStD~s~~~~~~e~~~~~~~~-I~vI~~~N~G~a~a~N~Gl~~A~g~~----- 267 (657)
T 4fix_A 194 DCVNALRELTADPLVDQVIGAVIVPDQGERKVRDHPDFPAAAARLGSR-LSIHDQPNLGGSGGYSRVMYEALKNT----- 267 (657)
T ss_dssp HHHHHHHHHTTSHHHHTTEEEEEEEECSSSCGGGSTTHHHHHHHHGGG-EEEEECCCCHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHcCccccCCCCEEEEEECcCCCccchHHHHHHHHhcCCC-EEEEECCCCCHHHHHHHHHHHHHhcC-----
Confidence 3555555555432 2 3888888775433322333334334446 667753 3444444322
Q ss_pred cCccccceEEEEcCCc------hHHHHHHHHhhCCCeEEEEEEE
Q psy9196 145 MPLFKVSEAIIVSPEA------KVDVLLKTLKKTPQLTLMATIV 182 (362)
Q Consensus 145 ~plF~GpTAIafS~ep------~aK~llkf~Kk~pkL~LkGGiV 182 (362)
+...|+|-+++ .+..+++++..++...+.||.+
T Consensus 268 -----~~dyIlfLD~D~~~~pd~L~~ll~~l~~~~~~~~vg~~i 306 (657)
T 4fix_A 268 -----DCQQILFMDDDIRLEPDSILRVLAMHRFAKAPMLVGGQM 306 (657)
T ss_dssp -----CCSEEEEECSSEEECTHHHHHHHHHHHHBSSCCEEEEEE
T ss_pred -----CCCEEEEECCCCccChhHHHHHHHHHHhCCCcEEEEeEE
Confidence 22356665432 5888999999999887888754
Done!