RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9196
(362 letters)
>gnl|CDD|240223 cd05797, Ribosomal_L10, Ribosomal protein L10 family, L10
subfamily; composed of bacterial 50S ribosomal protein
and eukaryotic mitochondrial 39S ribosomal protein, L10.
L10 occupies the L7/L12 stalk of the ribosome. The
N-terminal domain (NTD) of L10 interacts with L11
protein and forms the base of the L7/L12 stalk, while
the extended C-terminal helix binds to two or three
dimers of the NTD of L7/L12 (L7 and L12 are identical
except for an acetylated N-terminus). The L7/L12 stalk
is known to contain the binding site for elongation
factors G and Tu (EF-G and EF-Tu, respectively);
however, there is disagreement as to whether or not L10
is involved in forming the binding site. The stalk is
believed to be associated with GTPase activities in
protein synthesis. In a neuroblastoma cell line, L10 has
been shown to interact with the SH3 domain of Src and to
activate the binding of the Nck1 adaptor protein with
skeletal proteins such as the Wiskott-Aldrich Syndrome
Protein (WASP) and the WASP-interacting protein (WIP).
These bacteria and eukaryotic sequences have no
additional C-terminal domain, present in other
eukaryotic and archaeal orthologs.
Length = 157
Score = 59.1 bits (144), Expect = 1e-10
Identities = 34/159 (21%), Positives = 65/159 (40%), Gaps = 19/159 (11%)
Query: 81 ILAKEILARFEESQMIAIVHRSSM-LAEVN------REVKVVFKRVGMTMLDRYGRATIE 133
+ E+ + +E++ + + + +A++ RE V K V T+ +
Sbjct: 7 EIVAELKEKLKEAKSVVVADYRGLTVAQLTELRKELREAGVKLKVVKNTLA--------K 58
Query: 134 KALTNTKYISIMPLFKVSEAIIVSPEAKVD---VLLKTLKKTPQLTLMATIVDNRLLSKT 190
+AL T + + L K AI S E V VL K+ +L + +V+ ++L
Sbjct: 59 RALEGTGFEDLDDLLKGPTAIAFSEEDPVAAAKVLKDFAKENKKLEIKGGVVEGKVLDAE 118
Query: 191 ETEMYAT-TNLATQQALLVQTISSVATSLTSQLNHHSTT 228
E + A + A L+ + + AT L LN ++
Sbjct: 119 EVKALAKLPSREELLAQLLGLLQAPATKLVRVLNAPASK 157
>gnl|CDD|238222 cd00379, Ribosomal_L10_P0, Ribosomal protein L10 family; composed
of the large subunit ribosomal protein called L10 in
bacteria, P0 in eukaryotes, and L10e in archaea, as well
as uncharacterized P0-like eukaryotic proteins. In all
three kingdoms, L10 forms a tight complex with multiple
copies of the small acidic protein L12(e). This complex
forms a stalk structure on the large subunit of the
ribosome. The N-terminal domain (NTD) of L10 interacts
with L11 protein and forms the base of the L7/L12 stalk,
while the extended C-terminal helix binds to two or
three dimers of the NTD of L7/L12 (L7 and L12 are
identical except for an acetylated N-terminus). The
L7/L12 stalk is known to contain the binding site for
elongation factors G and Tu (EF-G and EF-Tu,
respectively); however, there is disagreement as to
whether or not L10 is involved in forming the binding
site. The stalk is believed to be associated with GTPase
activities in protein synthesis. In a neuroblastoma cell
line, L10 has been shown to interact with the SH3 domain
of Src and to activate the binding of the Nck1 adaptor
protein with skeletal proteins such as the
Wiskott-Aldrich Syndrome Protein (WASP) and the
WASP-interacting protein (WIP). Some eukaryotic P0
sequences have an additional C-terminal domain
homologous with acidic proteins P1 and P2.
Length = 155
Score = 51.0 bits (123), Expect = 6e-08
Identities = 29/152 (19%), Positives = 60/152 (39%), Gaps = 7/152 (4%)
Query: 82 LAKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRAT-IEKALTNTK 140
L +E+ ++ + + +V + E++ + G + + G+ T + +AL T
Sbjct: 6 LVEELKELLKKYKSVVVVDYRGLTVAQLTELRKELRESGAKL--KVGKNTLMRRALKGTG 63
Query: 141 YISIMPLFKVSEAIIVSPEAKVDV--LLKTLKKT-PQLTLMATIVDNRLLSKTETEMYAT 197
+ + PL K A+ + E V+V +LK K +L +V ++L A
Sbjct: 64 FEELKPLLKGPTALAFTNEDPVEVAKVLKDFAKENKKLFAKGGVVAGKVLDPAGVTALAK 123
Query: 198 T-NLATQQALLVQTISSVATSLTSQLNHHSTT 228
+ A+L+ + + L LN
Sbjct: 124 LPSREELLAMLIGLLKAPIAKLARLLNALGIG 155
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional.
Length = 1352
Score = 44.0 bits (104), Expect = 1e-04
Identities = 33/148 (22%), Positives = 54/148 (36%), Gaps = 16/148 (10%)
Query: 231 SYLDQHSGTGGEG---------GSSASEALSGSETSGGSEGEATSNEASGESQESAKAAS 281
S G G E + + S +G S ++ +S + S +
Sbjct: 241 SSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSP 300
Query: 282 SSDNQGEATSSNEASGE---SQESDSAKAASSSQSPTESAPGGEVSKAASATDSQSSEAA 338
SS G A SS AS S+ES S+ +SSS+S +A S + S + S+ A
Sbjct: 301 SSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPA 360
Query: 339 PGD----KVTDGKETPSTSDTDGDKSSR 362
+ + S + + G + R
Sbjct: 361 DPSSPRKRPRPSRAPSSPAASAGRPTRR 388
Score = 39.0 bits (91), Expect = 0.004
Identities = 23/122 (18%), Positives = 43/122 (35%), Gaps = 5/122 (4%)
Query: 237 SGTGGEGGSSASEALSGSETSGGSEGEATSNEASGESQESAKAASSSDNQGEATSSNEAS 296
+S S +S E + + +S S + + +S + + S+ +S
Sbjct: 269 IWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSS 328
Query: 297 GESQESDSAKAASS-----SQSPTESAPGGEVSKAASATDSQSSEAAPGDKVTDGKETPS 351
S S AA S S+SP+ S P ++ + S A + G+ T
Sbjct: 329 TSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTRR 388
Query: 352 TS 353
+
Sbjct: 389 RA 390
Score = 28.2 bits (63), Expect = 7.9
Identities = 22/121 (18%), Positives = 32/121 (26%), Gaps = 7/121 (5%)
Query: 239 TGGEGGSSASEALSGSETSGGSEGEATSNEASGESQESAKAASSSDNQG-EATSSNEASG 297
G +EA + S + +T AS + S S T +
Sbjct: 68 PTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPP 127
Query: 298 ESQESDSAKAASSSQSP-----TESAPGGEVS-KAASATDSQSSEAAPGDKVTDGKETPS 351
S D ++ SP G AS S A P + PS
Sbjct: 128 PSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPS 187
Query: 352 T 352
+
Sbjct: 188 S 188
>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional.
Length = 413
Score = 40.7 bits (95), Expect = 0.001
Identities = 22/129 (17%), Positives = 37/129 (28%), Gaps = 12/129 (9%)
Query: 237 SGTGGEGGSSASEALSGSETSGG--------SEGEATSNEASGESQESAKAASSSDNQGE 288
S T GS+ A S + S S + E A S + + +
Sbjct: 102 SPTPSPSGSAEELASGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQ 161
Query: 289 ATSSNEASGESQESDSAKAASSSQSPTESAPGGEVSKAASATDSQS---SEAAPGDKVTD 345
SS ++S +S+ +S + S+ QS P
Sbjct: 162 QPSS-FLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPPDEPGEPQSPTPQ 220
Query: 346 GKETPSTSD 354
+P+T
Sbjct: 221 QAPSPNTQQ 229
Score = 39.6 bits (92), Expect = 0.002
Identities = 16/112 (14%), Positives = 29/112 (25%), Gaps = 6/112 (5%)
Query: 236 HSGTGGEGGSSASEALSGSETSGGSEGEATSNEASGESQESAKAASSSDNQ-----GEAT 290
HS + E+ S + S+ ++S + ++
Sbjct: 134 HSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPP 193
Query: 291 SSNEASGESQESDSAKAASSSQSPT-ESAPGGEVSKAASATDSQSSEAAPGD 341
S + QSPT + AP +A D + G
Sbjct: 194 QSETPTSSPPPQSPPDEPGEPQSPTPQQAPSPNTQQAVEHEDEPTEPEREGP 245
Score = 37.6 bits (87), Expect = 0.008
Identities = 26/133 (19%), Positives = 45/133 (33%), Gaps = 5/133 (3%)
Query: 234 DQHSGTGGEGGSSASEALSGSETSGGSEGEATSNEASGESQESAKAASSSDNQGEATSSN 293
+ G GG GS + S + + GS E S + + S+ + +S + + S+
Sbjct: 84 KEERGQGGPSGSGSESVGSPTPSPSGSAEELASGLSPENTSGSSPESPASHSPPPSPPSH 143
Query: 294 EASGESQESDSAKAASSSQSPTESAPGGEVS-----KAASATDSQSSEAAPGDKVTDGKE 348
E +S + + Q + P E S S + S + T
Sbjct: 144 PGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPP 203
Query: 349 TPSTSDTDGDKSS 361
S D G+ S
Sbjct: 204 PQSPPDEPGEPQS 216
Score = 34.6 bits (79), Expect = 0.083
Identities = 25/118 (21%), Positives = 35/118 (29%), Gaps = 5/118 (4%)
Query: 233 LDQHSGTGGEGGSSASEALSGSETSGGSEGEATSNEASGESQESAKAASSSDNQGEATSS 292
L + +G S AS + S S E E+ S SS Q S
Sbjct: 118 LSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQ---QPSSFLQPSHEDS 174
Query: 293 NEAS--GESQESDSAKAASSSQSPTESAPGGEVSKAASATDSQSSEAAPGDKVTDGKE 348
E S+ + S++PT S P S + + AP E
Sbjct: 175 PEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPPDEPGEPQSPTPQQAPSPNTQQAVE 232
Score = 31.1 bits (70), Expect = 0.87
Identities = 24/107 (22%), Positives = 37/107 (34%), Gaps = 5/107 (4%)
Query: 233 LDQHSGTGGEGGSSASEALSGSETSGGSEGEATSNEASGESQESAKAASSSDNQGEATSS 292
+Q +A E+ G + G G + S S S + + S++ S
Sbjct: 62 AEQGHRQTESDTETAEESRHGEKEERGQGGPSGSGSESVGS-PTPSPSGSAEELASGLSP 120
Query: 293 NEASGESQESDSAKAASSSQSPTESAPGGEVSKAASATDSQSSEAAP 339
SG S ES AS S P+ + G A + + S P
Sbjct: 121 ENTSGSSPESP----ASHSPPPSPPSHPGPHEPAPPESHNPSPNQQP 163
>gnl|CDD|237284 PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase;
Reviewed.
Length = 460
Score = 40.3 bits (94), Expect = 0.001
Identities = 20/122 (16%), Positives = 35/122 (28%)
Query: 237 SGTGGEGGSSASEALSGSETSGGSEGEATSNEASGESQESAKAASSSDNQGEATSSNEAS 296
+ +SA + E + + E + A S S A
Sbjct: 304 AAAAVASAASAVGPVGPGEPNQPDDVAEAVKAEVAEVTDEVAAESVVQVADRDGESTPAV 363
Query: 297 GESQESDSAKAASSSQSPTESAPGGEVSKAASATDSQSSEAAPGDKVTDGKETPSTSDTD 356
E+ E+D + + A ++AASA + + A E P +
Sbjct: 364 EETSEADIEREQPGDLAGQAPAAHQVDAEAASAAPEEPAALASEAHDETEPEVPEKAAPI 423
Query: 357 GD 358
D
Sbjct: 424 PD 425
Score = 39.2 bits (91), Expect = 0.003
Identities = 22/118 (18%), Positives = 41/118 (34%), Gaps = 11/118 (9%)
Query: 245 SSASEALSGSETSGGSEGEATSN---EASGESQESAKAASSSDNQGEATSSNEASGESQE 301
S A E++ E + ++ E G+ A AA D + + + E + + E
Sbjct: 348 SVVQVADRDGESTPAVEETSEADIEREQPGDLAGQAPAAHQVDAEAASAAPEEPAALASE 407
Query: 302 SDSAKAASSSQSPTESAPGGEVSKAASATDSQSSEAAPGDKVTDGKETPSTSDTDGDK 359
A + + P ++AP A + + A PGD + D +
Sbjct: 408 ---AHDETEPEVPEKAAP-----IPDPAKPDELAVAGPGDDPAEPDGIRRQDDFSSRR 457
Score = 33.0 bits (75), Expect = 0.23
Identities = 26/124 (20%), Positives = 40/124 (32%), Gaps = 10/124 (8%)
Query: 244 GSSASEALSGSE--TSGGSEGEATSNEASGESQESAKAASSSD----NQGEATSSNEASG 297
G A AL GSE E E A+ + +A A NQ + + +
Sbjct: 278 GREAPGALRGSEYVVDEALEREPAELAAAAVAS-AASAVGPVGPGEPNQPDDVAEAVKAE 336
Query: 298 ESQESDSAKAASSSQSPT---ESAPGGEVSKAASATDSQSSEAAPGDKVTDGKETPSTSD 354
++ +D A S Q ES P E + A Q + A + + S
Sbjct: 337 VAEVTDEVAAESVVQVADRDGESTPAVEETSEADIEREQPGDLAGQAPAAHQVDAEAASA 396
Query: 355 TDGD 358
+
Sbjct: 397 APEE 400
Score = 29.9 bits (67), Expect = 2.4
Identities = 20/112 (17%), Positives = 33/112 (29%), Gaps = 1/112 (0%)
Query: 250 ALSGSETSGGSEGEATSNEASGESQESAKAASSSDNQGEATSSNEASGESQESDSAKAAS 309
A G E G G + + E + + AA++ + A GE + D A
Sbjct: 275 APKGREAPGALRGSEYVVDEALEREPAELAAAAVASAASAVGPV-GPGEPNQPDDVAEAV 333
Query: 310 SSQSPTESAPGGEVSKAASATDSQSSEAAPGDKVTDGKETPSTSDTDGDKSS 361
++ + S A S A + E D G +
Sbjct: 334 KAEVAEVTDEVAAESVVQVADRDGESTPAVEETSEADIEREQPGDLAGQAPA 385
>gnl|CDD|234632 PRK00099, rplJ, 50S ribosomal protein L10; Reviewed.
Length = 172
Score = 37.8 bits (89), Expect = 0.002
Identities = 38/168 (22%), Positives = 67/168 (39%), Gaps = 27/168 (16%)
Query: 85 EILARFEESQMIAIVHRSSM-LAEVN------REVKVVFKRVGMTMLDRYGRATIEKALT 137
E+ + +++Q + + +A++ RE V +K V T+ R AL
Sbjct: 12 ELAEKLKKAQSAVVADYRGLTVAQMTELRKKLREAGVEYKVVKNTLARR--------ALE 63
Query: 138 NTKYISIMPLFKVSEAIIVSPE-----AKVDVLLKTLKKTPQLTLMATIVDNRLLSKTET 192
T + + L K AI S E AKV L K +L + ++ ++L E
Sbjct: 64 GTGFEGLDDLLKGPTAIAFSYEDPVAAAKV--LKDFAKDNKKLEIKGGAIEGKVLDAEEV 121
Query: 193 EMYATTNLATQQ---ALLVQTISSVATSLTSQLNHHSTTLVSYLDQHS 237
+ A L +++ A L+ + + AT L LN + L L +
Sbjct: 122 KALAK--LPSREELLAKLLGVLQAPATKLAGVLNAPPSKLARVLKALA 167
>gnl|CDD|223044 PHA03325, PHA03325, nuclear-egress-membrane-like protein;
Provisional.
Length = 418
Score = 39.1 bits (91), Expect = 0.003
Identities = 27/121 (22%), Positives = 43/121 (35%), Gaps = 8/121 (6%)
Query: 234 DQHSGTGGEGGSSA-SEALSGSETSGGSEGEATSNEASGESQESAKAASSSDNQGEATSS 292
+HS S + E + E++E A+ A+S+ ++G +++
Sbjct: 299 SEHSDPEPLPASLPPPPVRRPRVKHPEAGKEEPDGARNAEAKEPAQPATSTSSKGSSSAQ 358
Query: 293 NEASGESQESDSAKAASSSQSPTESAPGGEVSKAASATDSQSSEAAPGDKVTDGKETPST 352
N+ SG + S AASS E G + S P VT E PS
Sbjct: 359 NKDSGSTGPGSSLAAASS---FLEDDDFGSPPLDLTT----SLRHMPSPSVTSAPEPPSI 411
Query: 353 S 353
Sbjct: 412 P 412
>gnl|CDD|236304 PRK08581, PRK08581, N-acetylmuramoyl-L-alanine amidase; Validated.
Length = 619
Score = 38.2 bits (89), Expect = 0.006
Identities = 23/134 (17%), Positives = 46/134 (34%), Gaps = 1/134 (0%)
Query: 223 NHHSTTLVSYLDQHSGTGGEGGSSASEALSGSETSGGSEGEATSNEASGESQESAKAASS 282
N T + L ++ ++ + L S S+ E N + + + SS
Sbjct: 98 NLPQTNINQLLTKNKYDDNYSLTTLIQNLFNLN-SDISDYEQPRNSEKSTNDSNKNSDSS 156
Query: 283 SDNQGEATSSNEASGESQESDSAKAASSSQSPTESAPGGEVSKAASATDSQSSEAAPGDK 342
N + SS + ++Q++ S+ S S + S + S + A
Sbjct: 157 IKNDTDTQSSKQDKADNQKAPSSNNTKPSTSNKQPNSPKPTQPNQSNSQPASDDTANQKS 216
Query: 343 VTDGKETPSTSDTD 356
+ ++ S S D
Sbjct: 217 SSKDNQSMSDSALD 230
Score = 34.4 bits (79), Expect = 0.10
Identities = 14/81 (17%), Positives = 28/81 (34%), Gaps = 5/81 (6%)
Query: 281 SSSDNQGEATSSNEASGESQESDSAKAASSSQSPTESAPGGEVSKAASATDSQSSEAAPG 340
S +S+ + ++ S+K + S+ + S ++ Q + P
Sbjct: 142 SEKSTNDSNKNSDSSIKNDTDTQSSKQDKADNQKAPSS----NNTKPSTSNKQPNSPKPT 197
Query: 341 DKVTDGKETPSTSDTDGDKSS 361
P++ DT KSS
Sbjct: 198 QPNQSNS-QPASDDTANQKSS 217
Score = 29.8 bits (67), Expect = 2.5
Identities = 12/73 (16%), Positives = 20/73 (27%)
Query: 246 SASEALSGSETSGGSEGEATSNEASGESQESAKAASSSDNQGEATSSNEASGESQESDSA 305
A + S S SN+ S+K +DN + N S S
Sbjct: 26 YADDPQKDSTAKTTSHDSKKSNDDETSKDTSSKDTDKADNNNTSNQDNNDKKFSTIDSST 85
Query: 306 KAASSSQSPTESA 318
+++
Sbjct: 86 SDSNNIIDFIYKN 98
Score = 29.8 bits (67), Expect = 2.6
Identities = 22/139 (15%), Positives = 43/139 (30%), Gaps = 3/139 (2%)
Query: 226 STTLVSYLDQHSGTGGEGGSSASEALSGSETSGGSEGEATSNEASGESQESAKAASSSDN 285
STTLV + S A + S S S + TS + S + + A ++S+
Sbjct: 12 STTLVLPTLTSPTAYADDPQKDSTAKTTSHDSKKSNDDETSKDTSSKDTDKADNNNTSNQ 71
Query: 286 QGEATSSNEASGESQESDSAKAASSSQSPTESAPGGEVSKAASATDSQSSEAAP---GDK 342
+ + +S++ P + S ++ +
Sbjct: 72 DNNDKKFSTIDSSTSDSNNIIDFIYKNLPQTNINQLLTKNKYDDNYSLTTLIQNLFNLNS 131
Query: 343 VTDGKETPSTSDTDGDKSS 361
E P S+ + S+
Sbjct: 132 DISDYEQPRNSEKSTNDSN 150
>gnl|CDD|164795 PHA00370, III, attachment protein.
Length = 297
Score = 37.6 bits (87), Expect = 0.008
Identities = 24/120 (20%), Positives = 46/120 (38%), Gaps = 9/120 (7%)
Query: 237 SGTGGEGGSSASEALSGSETSGGSEGEATSNEASGESQESAKAASSSDNQGEATSSNEAS 296
SG G GGS + G G + T + K A++ N+ T N+ +
Sbjct: 109 SGGGDTGGSGGGGSDGGGSEGGSTGKSLTKEGVGAGDFDYPKMANA--NKDALTEDNDQN 166
Query: 297 GESQESDSAKAASSSQSPTESAPGG--EVSKAASATDSQSSEAAPG----DKVTDGKETP 350
+++D + +S S +++ G V +S + A D++ +G +P
Sbjct: 167 ALQKDAD-EQLDKASASVSDAISGFMRGVGGLVDNGGGESGQFAGSNSEMDQLGEGDGSP 225
Score = 30.3 bits (68), Expect = 1.6
Identities = 24/112 (21%), Positives = 45/112 (40%), Gaps = 6/112 (5%)
Query: 237 SGTGGEGGSSASEALSGSETSGGSEGEATSNEASGESQESAKAASSSDNQG-EATSSNEA 295
G GG G S+ +G +T GG+ G + +G S S+ + + E
Sbjct: 83 DGDGGGTGEGGSD--TGGDTGGGNTGGGSGGGDTGGSGGGGSDGGGSEGGSTGKSLTKEG 140
Query: 296 SGESQESDSAKAASSSQ-SPTESAPGGEVSKAASATDSQSSEAAPGDKVTDG 346
G + + D K A++++ + TE + K A + A+ D ++
Sbjct: 141 VG-AGDFDYPKMANANKDALTEDNDQNALQKDADEQ-LDKASASVSDAISGF 190
>gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein. This entry is a highly
conserved protein present in eukaryotes.
Length = 680
Score = 37.2 bits (86), Expect = 0.014
Identities = 28/144 (19%), Positives = 46/144 (31%), Gaps = 8/144 (5%)
Query: 220 SQLNHHSTTLVSYL-DQHSGTGGEGGSSASEALSGSETSGGSEGEATSNEASGESQESAK 278
NHHS S L S S + + T++ +S + S
Sbjct: 274 GINNHHSKHADSKLQTIEVIENHSNKSRPSSSSTNGSKE-------TTSNSSSAAAGSIG 326
Query: 279 AASSSDNQGEATSSNEASGESQESDSAKAASSSQSPTESAPGGEVSKAASATDSQSSEAA 338
+ SS + + + +S +S S + SSS S ES ++ A DS+ +
Sbjct: 327 SKSSKSAKHSNRNKSNSSPKSHSSANGSVPSSSVSDNESKQKRASKSSSGARDSKKDASG 386
Query: 339 PGDKVTDGKETPSTSDTDGDKSSR 362
T P + R
Sbjct: 387 MSANGTVENCIPENKISTPSAIER 410
>gnl|CDD|222790 PHA00430, PHA00430, tail fiber protein.
Length = 568
Score = 36.8 bits (85), Expect = 0.018
Identities = 22/113 (19%), Positives = 46/113 (40%), Gaps = 10/113 (8%)
Query: 260 SEGEATSNEASGESQES-AKAASSSDNQGEATSSNEASGESQESDSAKAASSSQSPTESA 318
+E + N+A + ES A A ++ + EA SN + + + +S + ++
Sbjct: 173 NEADRARNQAERFNNESGASATNTKQWRSEADGSNSEANRFKGYADSMTSSVEAAKGQAE 232
Query: 319 P--------GGEVSKAA-SATDSQSSEAAPGDKVTDGKETPSTSDTDGDKSSR 362
G +KAA SA+ + +SE + T + + + D++
Sbjct: 233 SSSKEANTAGDYATKAAASASAAHASEVNAANSATAAATSANRAKQQADRAKT 285
Score = 34.9 bits (80), Expect = 0.062
Identities = 23/103 (22%), Positives = 41/103 (39%), Gaps = 5/103 (4%)
Query: 235 QHSGTGGEGGSSASEALSGSETSGGSEGEATSNEASGESQESAKAASSSDNQGEATSSNE 294
Q E G+SA+ + GS EA + +S S+ A+ + + +N
Sbjct: 181 QAERFNNESGASATNTKQWRSEADGSNSEANRFKGYADSMTSSVEAAKGQAESSSKEANT 240
Query: 295 ASGESQESDSAKAASSSQSPTESAPGGEVSKAASATDSQSSEA 337
A + KAA+S+ + S S A+AT + ++
Sbjct: 241 AGDYAT-----KAAASASAAHASEVNAANSATAAATSANRAKQ 278
Score = 31.4 bits (71), Expect = 0.88
Identities = 27/137 (19%), Positives = 57/137 (41%), Gaps = 17/137 (12%)
Query: 201 ATQQALLVQTISSVATSLTSQLNHHSTTLVSYLDQHSGTGGEGGSSASEALSGSETSGGS 260
A QA S + + T Q + G+ E A S + + +
Sbjct: 178 ARNQAERFNNESGASATNTKQWR----------SEADGSNSEANRFKGYADSMTSSVEAA 227
Query: 261 EGEAT-----SNEASGESQESAKAASSSDNQGEATSSNEASGESQESDSAKAASSSQSPT 315
+G+A +N A + ++A +AS++ + E ++N A+ + ++ AK + ++ T
Sbjct: 228 KGQAESSSKEANTAGDYATKAAASASAA-HASEVNAANSATAAATSANRAK-QQADRAKT 285
Query: 316 ESAPGGEVSKAASATDS 332
E+ G ++ A A +
Sbjct: 286 EADKLGNMNGFAGAIEK 302
>gnl|CDD|148679 pfam07218, RAP1, Rhoptry-associated protein 1 (RAP-1). This family
consists of several rhoptry-associated protein 1 (RAP-1)
sequences which appear to be specific to Plasmodium
falciparum.
Length = 790
Score = 36.6 bits (84), Expect = 0.022
Identities = 35/130 (26%), Positives = 49/130 (37%), Gaps = 9/130 (6%)
Query: 230 VSYLDQHSG--TGGEGGSSASEALSGSET-SGGSEGEATSNEASGESQESAKAASSSDNQ 286
S+L+ + G + SE S+ G S + S A E +S N
Sbjct: 67 ESFLENKASKDDGNINLTDTSENGDASKKGHGKSRVRSASAAAILEEDDSKDDMEFKANP 126
Query: 287 GEAT-----SSNEASGESQESDSAKAASS-SQSPTESAPGGEVSKAASATDSQSSEAAPG 340
EA N+ G + SD AS+ S S + S G S SATDS + A+
Sbjct: 127 NEAGKPGKPKGNQGEGLASSSDGKSKASAKSGSKSASKHGESNSSDESATDSGKASASVA 186
Query: 341 DKVTDGKETP 350
V +E P
Sbjct: 187 GIVGADEEAP 196
Score = 29.3 bits (65), Expect = 3.7
Identities = 23/108 (21%), Positives = 39/108 (36%), Gaps = 2/108 (1%)
Query: 237 SGTGGEGGSSASEALSGSETSGGSEGEATSNEASGESQESAKAASSSDNQGEATSSNEAS 296
G +SA+ L ++ E +A NEA K + ++AS
Sbjct: 97 HGKSRVRSASAAAILEEDDSKDDMEFKANPNEAGKPG--KPKGNQGEGLASSSDGKSKAS 154
Query: 297 GESQESDSAKAASSSQSPTESAPGGEVSKAASATDSQSSEAAPGDKVT 344
+S ++K S+ S + G+ S + + EA P K T
Sbjct: 155 AKSGSKSASKHGESNSSDESATDSGKASASVAGIVGADEEAPPAPKNT 202
>gnl|CDD|216860 pfam02063, MARCKS, MARCKS family.
Length = 296
Score = 35.2 bits (80), Expect = 0.043
Identities = 31/119 (26%), Positives = 49/119 (41%), Gaps = 11/119 (9%)
Query: 235 QHSGTGGEGGSSASEALSGSETSGGSEGEATSNEASGESQESAKAASSSDNQGEA----- 289
+ +G G E +A+E E + + EA S E + E A AA + GE
Sbjct: 158 KEAGEGAEAEGAAAEKEGAKEEAAAAAPEAGSGEEAAAPGEEAGAAGAEGEAGEEPAADA 217
Query: 290 ------TSSNEASGESQESDSAKAASSSQSPTESAPGGEVSKAASATDSQSSEAAPGDK 342
EA+ E +++ AKAA ++ + A S AA + EAAP ++
Sbjct: 218 EPEQPEAKPEEAAPEKPQAEEAKAAEEQKAEEKPAEEAGASSAAQEAPAAEQEAAPAEE 276
>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional.
Length = 331
Score = 34.6 bits (80), Expect = 0.067
Identities = 20/113 (17%), Positives = 45/113 (39%), Gaps = 2/113 (1%)
Query: 209 QTISSVATSLTSQLNHHSTTLVSYLDQHSGTGGEGGSSASEALSGSETSGGSEGEATSNE 268
+ I+++A +++L+ +S V LD + T + + + + T+ + AT+
Sbjct: 141 EEITTMADQSSAELSQNSGQSVP-LDTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPA 199
Query: 269 ASGESQESAKAASSSDNQGEATSSNE-ASGESQESDSAKAASSSQSPTESAPG 320
+ + Q++A A S N A + A + + S + P
Sbjct: 200 PAVDPQQNAVVAPSQANVDTAATPAPAAPATPDGAAPLPTDQAGVSTPAADPN 252
Score = 30.8 bits (70), Expect = 1.0
Identities = 16/110 (14%), Positives = 32/110 (29%), Gaps = 1/110 (0%)
Query: 229 LVSYLDQHSGTGGEGGSSASEALSGSETSGGSEGEATSNEASGESQESAKAASSSDNQGE 288
+ + DQ S + S L S T+ + A + S A ++
Sbjct: 143 ITTMADQSSAELSQNSGQ-SVPLDTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPA 201
Query: 289 ATSSNEASGESQESDSAKAASSSQSPTESAPGGEVSKAASATDSQSSEAA 338
A +++ AA+ + + + G A S +
Sbjct: 202 VDPQQNAVVAPSQANVDTAATPAPAAPATPDGAAPLPTDQAGVSTPAADP 251
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 1096
Score = 35.0 bits (80), Expect = 0.079
Identities = 26/129 (20%), Positives = 45/129 (34%), Gaps = 10/129 (7%)
Query: 235 QHSG--TGGEGGSSASEALSGSETSGGSEGEATSNEASGESQESAKAASSSDNQGEATSS 292
+H+G TG EG E + +E G E E GE++ + S + E
Sbjct: 639 EHTGERTGEEG-----ERPTEAEGENGEESG-GEAEQEGETETKGENESEGEIPAERKGE 692
Query: 293 NEASGESQESDSAKAASSSQSPTESAPGGEVSKAASATDSQSSEAAP--GDKVTDGKETP 350
E GE + ++ + E E + ++ E D+ E
Sbjct: 693 QEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGK 752
Query: 351 STSDTDGDK 359
+T+GD+
Sbjct: 753 HEVETEGDR 761
Score = 31.5 bits (71), Expect = 0.79
Identities = 24/117 (20%), Positives = 39/117 (33%), Gaps = 3/117 (2%)
Query: 240 GGEGGSSASEALSGSETSGGSEGEATSNEASGESQESAKAASSSDNQGEATSSNEASGES 299
G + + E G +E E +E GE Q D E +E E+
Sbjct: 751 GKHEVETEGDRKET-EHEGETEAEGKEDEDEGEIQAGEDGEMKGDEGAEGKVEHEGETEA 809
Query: 300 QESDSAKAASSSQSPTESAPGGEVSKAASATDSQSSEAAPGDKVTDGKETPSTSDTD 356
E D + S +Q+ + +A + EA +K DG D++
Sbjct: 810 GEKDEHEGQSETQADDTEVKDETGEQELNAEN--QGEAKQDEKGVDGGGGSDGGDSE 864
Score = 28.0 bits (62), Expect = 9.0
Identities = 30/128 (23%), Positives = 44/128 (34%), Gaps = 7/128 (5%)
Query: 239 TGGEGGSSASEALSGSETSGGS-----EGEATSNEASGESQESAKAASSSD-NQGEATSS 292
GEG A EA ET E EA E GE + + D +GEA
Sbjct: 693 QEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGK 752
Query: 293 NEASGESQESDSAKAASSSQSPTESAPGGEVSKAASATDSQSSEAAPGDKVTDGKETPST 352
+E E ++ + E GE+ +A + + E A G +G+
Sbjct: 753 HEVETEGDRKETEHEGETEAEGKEDEDEGEI-QAGEDGEMKGDEGAEGKVEHEGETEAGE 811
Query: 353 SDTDGDKS 360
D +S
Sbjct: 812 KDEHEGQS 819
>gnl|CDD|218440 pfam05110, AF-4, AF-4 proto-oncoprotein. This family consists of
AF4 (Proto-oncogene AF4) and FMR2 (Fragile X E mental
retardation syndrome) nuclear proteins. These proteins
have been linked to human diseases such as acute
lymphoblastic leukaemia and mental retardation. The
family also contains a Drosophila AF4 protein homologue
Lilliputian which contains an AT-hook domain.
Lilliputian represents a novel pair-rule gene that acts
in cytoskeleton regulation, segmentation and
morphogenesis in Drosophila.
Length = 1154
Score = 34.5 bits (79), Expect = 0.098
Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 265 TSNEASGESQESAKAASSSDNQGEATSSNEASGESQESDSAKAASSSQSPTESAPGGEVS 324
+S+E S E Q + K S + T + S + + S+ +SSS S +ES+ G +
Sbjct: 363 SSSEDSDEEQATEKPPSRN------TPPSAPSSNPEPAASSSGSSSSSSGSESSSGSDSE 416
Query: 325 KAASATDSQSSEA 337
+S++DS+ +E
Sbjct: 417 SESSSSDSEENEP 429
>gnl|CDD|226365 COG3846, TrbL, Type IV secretory pathway, TrbL components
[Intracellular trafficking and secretion].
Length = 452
Score = 34.3 bits (79), Expect = 0.10
Identities = 25/128 (19%), Positives = 44/128 (34%), Gaps = 9/128 (7%)
Query: 235 QHSGTGGEGGSS-ASEALSGSETSGGSEGEATSNEASGESQESAKAASSSDNQGEATSSN 293
+ + G+S AS A S + G A+G S + +
Sbjct: 321 SLASSVTALGTSMASAAASAFASGRKGSGSGAFGTAAGV-----GDVKSPGAKAAMRTLG 375
Query: 294 EASGESQESDSAKAASSSQSPTESAPGGEVSKAASATDSQ---SSEAAPGDKVTDGKETP 350
A+G++ S ++ + +S SA G A+ + + A G V G T
Sbjct: 376 RAAGDTGVSVASGVGQAPKSAGGSAAGKSAVAKATGVQAAPGWARRMASGQNVFAGASTA 435
Query: 351 STSDTDGD 358
+ + GD
Sbjct: 436 AAAVRGGD 443
>gnl|CDD|179316 PRK01655, spxA, transcriptional regulator Spx; Reviewed.
Length = 131
Score = 32.0 bits (73), Expect = 0.18
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 7/69 (10%)
Query: 49 YLLPSHEKCQKARARQWLMERK-GLNEENIFQNILA----KEILARFEESQMIAIVHRSS 103
+ PS C+KA+A WL E E NIF + L K+IL E+ I RS
Sbjct: 5 FTSPSCTSCRKAKA--WLEEHDIPFTERNIFSSPLTIDEIKQILRMTEDGTDEIISTRSK 62
Query: 104 MLAEVNREV 112
+ ++N +V
Sbjct: 63 VFQKLNVDV 71
>gnl|CDD|233697 TIGR02040, PpsR-CrtJ, transcriptional regulator PpsR. This model
represents the transcriptional regulator PpsR which is
strictly associated with photosynthetic proteobacteria
and found in photosynthetic operons. PpsR has been
reported to be a repressor. These proteins contain a
Helix-Turn_Helix motif of the "fis" type (pfam02954)
[Energy metabolism, Photosynthesis].
Length = 442
Score = 32.9 bits (75), Expect = 0.28
Identities = 17/62 (27%), Positives = 31/62 (50%)
Query: 158 PEAKVDVLLKTLKKTPQLTLMATIVDNRLLSKTETEMYATTNLATQQALLVQTISSVATS 217
+ VLL +++T Q+ L AT + ++TE E+ A ++ L+V I ++
Sbjct: 305 GGVDLRVLLSNVRRTGQVRLYATTLTGEFGAQTEVEISAAWVDQGERPLIVLVIRDISRR 364
Query: 218 LT 219
LT
Sbjct: 365 LT 366
>gnl|CDD|130712 TIGR01651, CobT, cobaltochelatase, CobT subunit. This model
describes Pseudomonas denitrificans CobT gene product,
which is a cobalt chelatase subunit that functions in
cobalamin biosynthesis. Cobalamin (vitamin B12) can be
synthesized via several pathways, including an aerobic
pathway (found in Pseudomonas denitrificans) and an
anaerobic pathway (found in P. shermanii and Salmonella
typhimurium). These pathways differ in the point of
cobalt insertion during corrin ring formation. There are
apparently a number of variations on these two pathways,
where the major differences seem to be concerned with
the process of ring contraction. Confusion regarding the
functions of enzymes found in the aerobic vs. anaerobic
pathways has arisen because nonhomologous genes in these
different pathways were given the same gene symbols.
Thus, cobT in the aerobic pathway (P. denitrificans) is
not a homolog of cobT in the anaerobic pathway (S.
typhimurium). It should be noted that E. coli
synthesizes cobalamin only when it is supplied with the
precursor cobinamide, which is a complex intermediate.
Additionally, all E. coli cobalamin synthesis genes
(cobU, cobS and cobT) were named after their Salmonella
typhimurium homologs which function in the anaerobic
cobalamin synthesis pathway. This model describes the
aerobic cobalamin pathway Pseudomonas denitrificans CobT
gene product, which is a cobalt chelatase subunit, with
a MW ~70 kDa. The aerobic pathway cobalt chelatase is a
heterotrimeric, ATP-dependent enzyme that catalyzes
cobalt insertion during cobalamin biosynthesis. The
other two subunits are the P. denitrificans CobS
(TIGR01650) and CobN (pfam02514 CobN/Magnesium
Chelatase) proteins. To avoid potential confusion with
the nonhomologous Salmonella typhimurium/E.coli cobT
gene product, the P. denitrificans gene symbol is not
used in the name of this model [Biosynthesis of
cofactors, prosthetic groups, and carriers, Heme,
porphyrin, and cobalamin].
Length = 600
Score = 32.6 bits (74), Expect = 0.31
Identities = 17/90 (18%), Positives = 28/90 (31%), Gaps = 2/90 (2%)
Query: 268 EASGESQESAKAASSSDNQGEATSSNEASGESQESDSAKAASSSQSPTESAPGGEVSKAA 327
E G+ ES D+Q E E A S++ + GE +
Sbjct: 201 EEMGDDTESEDEEDGDDDQPTENEQEEQGEGEGEGQEGSAPQESEATDRESESGE-EEMV 259
Query: 328 SATDSQSSEAAPGDKVTDGK-ETPSTSDTD 356
+ + + D T G+ P+ T
Sbjct: 260 QSDQDDLPDESDDDSETPGEGARPARPFTS 289
Score = 29.1 bits (65), Expect = 4.3
Identities = 18/70 (25%), Positives = 22/70 (31%), Gaps = 1/70 (1%)
Query: 234 DQHSGTGGEGGSSASEALSGSETSGGSEGEATSNEASGESQESAKAASSSDNQGEATSSN 293
D T E G E S E EAT E S +E + D E+ +
Sbjct: 216 DDDQPTENEQEEQGEGEGEGQEGSAPQESEATDRE-SESGEEEMVQSDQDDLPDESDDDS 274
Query: 294 EASGESQESD 303
E GE
Sbjct: 275 ETPGEGARPA 284
Score = 28.8 bits (64), Expect = 6.0
Identities = 17/96 (17%), Positives = 33/96 (34%), Gaps = 13/96 (13%)
Query: 265 TSNEASGESQESAKAASSSDNQGEATSSNEASGESQESDSAKAASSSQSPTESAPGGEVS 324
S E + E + ++ D + + NE + + + S+ Q
Sbjct: 195 RSMELAEEMGDDTESEDEEDGDDDQPTENEQEEQGEGEGEGQEGSAPQ-----------E 243
Query: 325 KAASATDSQSSEAAPGDKVTDG--KETPSTSDTDGD 358
A+ +S+S E D E+ S+T G+
Sbjct: 244 SEATDRESESGEEEMVQSDQDDLPDESDDDSETPGE 279
Score = 28.4 bits (63), Expect = 6.4
Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 5/76 (6%)
Query: 255 ETSGGSEGEATSNEAS---GESQESAKAASSSDNQGEATSSNEASGESQESDSAKAASSS 311
+ G + + T NE E + ++ ++ EAT SGE + S +
Sbjct: 211 DEEDGDDDQPTENEQEEQGEGEGEGQEGSAPQES--EATDRESESGEEEMVQSDQDDLPD 268
Query: 312 QSPTESAPGGEVSKAA 327
+S +S GE ++ A
Sbjct: 269 ESDDDSETPGEGARPA 284
>gnl|CDD|237537 PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional.
Length = 440
Score = 32.6 bits (75), Expect = 0.31
Identities = 27/105 (25%), Positives = 40/105 (38%), Gaps = 5/105 (4%)
Query: 238 GTGGEGGSSASEALSGSETSGGSEGEATSNEASGESQESAKAASSSD---NQGEATSSNE 294
G G A+ A G + G A S A+G S + AA A +S
Sbjct: 297 GGGAAAAGGAAAAARGGAAAAGGASSAYSAGAAGGSGAAGVAAGLGGVARAGASAAASPL 356
Query: 295 ASGESQESDSAKAASSSQSPTESAPGGEVSKAASATDSQSSEAAP 339
S+ ++S K SS ++ S GG AA+A ++ P
Sbjct: 357 RRAASRAAESMK--SSFRAGARSTGGGAGGAAAAAAAGAAAAGPP 399
Score = 29.1 bits (66), Expect = 3.5
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 10/103 (9%)
Query: 237 SGTGGEGGSSASEALSGSETSGGSEGEATSNEASGESQESAKAASSSDNQGEATSSNEAS 296
+ GG++A+ S + ++G + G + A+G A+A A +S
Sbjct: 306 AAAAARGGAAAAGGASSAYSAGAAGGSGAAGVAAGLGG-VARAG------ASAAASPLRR 358
Query: 297 GESQESDSAKAASSSQSPTESAPGGEVSKAASATDSQSSEAAP 339
S+ ++S K SS + GG AA+A + ++ A P
Sbjct: 359 AASRAAESMK---SSFRAGARSTGGGAGGAAAAAAAGAAAAGP 398
>gnl|CDD|224363 COG1446, COG1446, Asparaginase [Amino acid transport and
metabolism].
Length = 307
Score = 31.9 bits (73), Expect = 0.43
Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 4/57 (7%)
Query: 75 ENIFQNILAKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRAT 131
E I +N LA +I AR + + V +K + G+ +D G
Sbjct: 231 EVIIRNALAFDIAARVRYGLSLDA----ACERVVEEALKALGGDGGLIAVDAKGNVA 283
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 32.3 bits (73), Expect = 0.53
Identities = 22/128 (17%), Positives = 39/128 (30%), Gaps = 8/128 (6%)
Query: 241 GEGGSSASEALSGSETSGGSEGEATSNEASGESQESAKAASSSDNQGEATSSNEASGESQ 300
E ++ E + + S +E + NE E E+ + S G + GE
Sbjct: 4037 LEENNTLDEDIQQDDFSDLAEDDEKMNEDGFE--ENVQENEESTEDGVKSDEELEQGEVP 4094
Query: 301 ESDS------AKAASSSQSPTESAPGGEVSKAASATDSQSSEAAPGDKVTDGKETPSTSD 354
E + A S+ S + + + G+ DG+ D
Sbjct: 4095 EDQAIDNHPKMDAKSTFASAEADEENTDKGIVGENEELGEEDGVRGNGTADGEFEQVQED 4154
Query: 355 TDGDKSSR 362
T K +
Sbjct: 4155 TSTPKEAM 4162
>gnl|CDD|237019 PRK11907, PRK11907, bifunctional 2',3'-cyclic nucleotide
2'-phosphodiesterase/3'-nucleotidase precursor protein;
Reviewed.
Length = 814
Score = 31.7 bits (72), Expect = 0.71
Identities = 16/81 (19%), Positives = 32/81 (39%), Gaps = 1/81 (1%)
Query: 247 ASEALSGSETSGGSEGEATSNEASGESQESAKAASSSDN-QGEATSSNEASGESQESDSA 305
A E ++ + + + T E+ + + EA SS+E + S + A
Sbjct: 28 AEEIVTTTPATSTEAEQTTPVESDATEEADNTETPVAATTAAEAPSSSETAETSDPTSEA 87
Query: 306 KAASSSQSPTESAPGGEVSKA 326
++S++ T + E SK
Sbjct: 88 TDTTTSEARTVTPAATETSKP 108
>gnl|CDD|219927 pfam08601, PAP1, Transcription factor PAP1. The transcription
factor Pap1 regulates antioxidant-gene transcription in
response to H2O2. This region is cysteine rich.
Alkylation of cysteine residues following treatment with
a cysteine alkylating agent can mask the accessibility
of the nuclear exporter Crm1, triggering nuclear
accumulation and Pap1 dependent transcriptional
expression.
Length = 344
Score = 31.5 bits (71), Expect = 0.75
Identities = 22/140 (15%), Positives = 52/140 (37%), Gaps = 14/140 (10%)
Query: 186 LLSKTETEMYATTNLATQQALLVQTISSVATSLTSQLNHHSTTLVSYLDQHSGTGGEGGS 245
LL+ TE+ + + N S + ++ ++ N+ + + S G
Sbjct: 60 LLNSTESNVSSPNNNPNGYT------SPSSAAMNNKSNNRAVDPSANASAASTNSPNGLQ 113
Query: 246 SASEALSGSETSGGSEGEATSNEASGESQESAKAASSSDNQGEATSSNEASGES-----Q 300
S++ + ++ S + S+ + G + + + +S + AS +
Sbjct: 114 SSATQYNSNDNSSSD---SPSSGSDGFTNQLLSSLGTSPEPSTESPPQLASVNNFAAIRN 170
Query: 301 ESDSAKAASSSQSPTESAPG 320
++S S+ S T + PG
Sbjct: 171 NAESNSNVPSAASSTPNIPG 190
>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed.
Length = 1228
Score = 31.4 bits (72), Expect = 0.78
Identities = 14/79 (17%), Positives = 29/79 (36%)
Query: 275 ESAKAASSSDNQGEATSSNEASGESQESDSAKAASSSQSPTESAPGGEVSKAASATDSQS 334
S A +++ A +S A+ + ++ +A A + + +AP + AA+A +
Sbjct: 39 GSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAA 98
Query: 335 SEAAPGDKVTDGKETPSTS 353
AA
Sbjct: 99 PPAAAAAAAPAAAAVEDEV 117
>gnl|CDD|227052 COG4708, COG4708, Predicted membrane protein [Function unknown].
Length = 169
Score = 30.1 bits (68), Expect = 0.93
Identities = 10/41 (24%), Positives = 20/41 (48%)
Query: 115 VFKRVGMTMLDRYGRATIEKALTNTKYISIMPLFKVSEAII 155
+F +G+ + +Y + + + N +I LF +S II
Sbjct: 84 IFLSLGVILFSKYSKDYLFNGIINKAFIFFSILFSISMFII 124
>gnl|CDD|237367 PRK13371, PRK13371, 4-hydroxy-3-methylbut-2-enyl diphosphate
reductase; Provisional.
Length = 387
Score = 30.7 bits (70), Expect = 1.1
Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 14/63 (22%)
Query: 83 AKEILARFEES-----------QMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRAT 131
+E L RF ++ + + + ++++ML E+ +F+R TML +YG A
Sbjct: 203 REEFLERFAKAYSPGFDPDRDLERVGVANQTTMLKSETEEIGKLFER---TMLRKYGPAN 259
Query: 132 IEK 134
+ +
Sbjct: 260 LNE 262
>gnl|CDD|114645 pfam05934, MCLC, Mid-1-related chloride channel (MCLC). This
family consists of several mid-1-related chloride
channels. mid-1-related chloride channel (MCLC) proteins
function as a chloride channel when incorporated in the
planar lipid bilayer.
Length = 577
Score = 30.9 bits (69), Expect = 1.1
Identities = 20/65 (30%), Positives = 26/65 (40%)
Query: 257 SGGSEGEATSNEASGESQESAKAASSSDNQGEATSSNEASGESQESDSAKAASSSQSPTE 316
+GG +GE T E S E + AK S N + + E + S A S Q T
Sbjct: 498 TGGIKGEGTGEELSQEDHQIAKPIKESGNDERGNTEGPEAAEKAQLKSEAAGSPDQGSTY 557
Query: 317 SAPGG 321
S G
Sbjct: 558 SPARG 562
>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta;
Provisional.
Length = 464
Score = 31.0 bits (71), Expect = 1.1
Identities = 12/54 (22%), Positives = 24/54 (44%)
Query: 297 GESQESDSAKAASSSQSPTESAPGGEVSKAASATDSQSSEAAPGDKVTDGKETP 350
GES A A+++++ + + A A + ++ AAP +V + P
Sbjct: 81 GESASDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADPDIP 134
>gnl|CDD|185641 PTZ00462, PTZ00462, Serine-repeat antigen protein; Provisional.
Length = 1004
Score = 30.8 bits (69), Expect = 1.2
Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 2/75 (2%)
Query: 234 DQHSGTGGEGGSSASEALSGSETSGGSEGEATSNEASGESQESAKAASSSDNQGEATSSN 293
D G + + S G E++ G+ ++ K D + S N
Sbjct: 44 DNAGNIDGSPIGNLDANIHAS--FGADPKESSGANLPGKKEKKKKEIRGHDIMSNSDSQN 101
Query: 294 EASGESQESDSAKAA 308
+S E Q++ K+A
Sbjct: 102 SSSIEKQDNIQIKSA 116
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau;
Validated.
Length = 824
Score = 30.7 bits (70), Expect = 1.3
Identities = 25/179 (13%), Positives = 50/179 (27%), Gaps = 17/179 (9%)
Query: 174 QLTLMATIVDNRLLSKTETEMYATTNLATQQALLV---------QTISSVAT---SLTSQ 221
+LT A +V++ L TEM T+ LL + L +
Sbjct: 330 ELTRAADVVNDGL-----TEMRGATSPRLLLELLCARMLLPSASDDERGLLARLERLERR 384
Query: 222 LNHHSTTLVSYLDQHSGTGGEGGSSASEALSGSETSGGSEGEATSNEASGESQESAKAAS 281
L S ++ + A + + A A + A +
Sbjct: 385 LGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSP 444
Query: 282 SSDNQGEATSSNEASGESQESDSAKAASSSQSPTESAPGGEVSKAASATDSQSSEAAPG 340
+ + S + + A++ + AP + A +A + + A
Sbjct: 445 AGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAP 503
Score = 29.6 bits (67), Expect = 3.6
Identities = 21/131 (16%), Positives = 42/131 (32%), Gaps = 9/131 (6%)
Query: 233 LDQHSGTGGEGGSSASEALSGSETSGGSEGEATSNEASGESQESAKAASSSDNQGEATSS 292
L++ G G G+ A+ A S + + A A+ +A A ++ Q +
Sbjct: 381 LERRLGVAGGAGAPAAAAPSAA----AAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPA 436
Query: 293 NEASGESQESDSAKAASSS-----QSPTESAPGGEVSKAASATDSQSSEAAPGDKVTDGK 347
+ S ++ + S + AP + +A + + AAP
Sbjct: 437 PAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAA 496
Query: 348 ETPSTSDTDGD 358
+ D
Sbjct: 497 PAAPAAPAGAD 507
>gnl|CDD|240430 PTZ00473, PTZ00473, Plasmodium Vir superfamily; Provisional.
Length = 420
Score = 30.6 bits (69), Expect = 1.5
Identities = 24/109 (22%), Positives = 33/109 (30%), Gaps = 16/109 (14%)
Query: 252 SGSETSGGSEGEATSNEASGESQESAKAASSSDNQGEATSSNEASGESQESDSAKAASSS 311
+ GG + S ES SS+ G + G SQ +DS S
Sbjct: 317 PYNANYGGQFNSRSGRTGSSESIRGFTYDSSTTYGGSSY------GTSQ-TDSTSTYGSR 369
Query: 312 QSPTESAPGGEVSKAASATDSQSSEAAPGDKVTDGKETPSTSDTDGDKS 360
+ S GG S S S T + +SD+ G
Sbjct: 370 STFDSSTGGGSQSGGGSTYGGSS---------TFDGSSRGSSDSFGVSY 409
>gnl|CDD|217503 pfam03344, Daxx, Daxx Family. The Daxx protein (also known as the
Fas-binding protein) is thought to play a role in
apoptosis, but precise role played by Daxx remains to be
determined. Daxx forms a complex with Axin.
Length = 715
Score = 30.7 bits (69), Expect = 1.6
Identities = 20/113 (17%), Positives = 35/113 (30%), Gaps = 1/113 (0%)
Query: 241 GEGGSSASEALSGSETSGGSEGEATSNEASGESQESAKAASSSDNQGEATSSNEASGESQ 300
S S +++ E+ E E E +E ++ E EA S+
Sbjct: 424 ASSTSGESPSMASQESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSE 483
Query: 301 ESDSAKAASSSQSPTESAPGGEVSKAASATDSQSSEAAPGDKVTDGKETPSTS 353
E + ++ E E + A S+ SE + E+P
Sbjct: 484 E-EMEGSSEGDGDGEEPEEDAERRNSEMAGISRMSEGQQPRGSSVQPESPQEE 535
>gnl|CDD|189000 cd08662, M13, Peptidase family M13 includes neprilysin,
endothelin-converting enzyme I. M13 family of
metallopeptidases includes neprilysin (neutral
endopeptidase, NEP, enkephalinase, CD10, CALLA, EC
3.4.24.11), endothelin-converting enzyme I (ECE-1, EC
3.4.24.71), erythrocyte surface antigen KELL (ECE-3),
phosphate-regulating gene on the X chromosome (PHEX),
soluble secreted endopeptidase (SEP), and damage-induced
neuronal endopeptidase (DINE)/X-converting enzyme (XCE).
These proteins consist of a short N-terminal cytoplasmic
domain, a single transmembrane helix, and a larger
C-terminal extracellular domain containing the active
site. Proteins in this family fulfill a broad range of
physiological roles due to the greater variation in the
S2' subsite allowing substrate specificity. NEP is
expressed in a variety of tissues including kidney and
brain, and is involved in many physiological and
pathological processes, including blood pressure and
inflammatory response. It degrades a wide array of
substrates such as substance P, enkephalins,
cholecystokinin, neurotensin and somatostatin. It is an
important enzyme in the regulation of amyloid-beta
(Abeta) protein that forms amyloid plaques that are
associated with Alzeimers disease (AD). ECE-1 catalyzes
the final rate-limiting step in the biosynthesis of
endothelins via post-translational conversion of the
biologically inactive big endothelins. Like NEP, it also
hydrolyses bradykinin, substance P, neurotensin and
Abeta. Endothelin-1 overproduction has been implicated
in various diseases, including stroke, asthma,
hypertension, and cardiac and renal failure. Kell is a
homolog of NEP and constitutes a major antigen on human
erythrocytes; it preferentially cleaves big endothelin-3
to produce bioactive endothelin-3, but is also known to
cleave substance P and neurokinin A. PHEX forms a
complex interaction with fibroblast growth factor 23
(FGF23) and matrix extracellular phosphoglycoprotein,
causing bone mineralization. A loss-of-function mutation
in PHEX disrupts this interaction leading to
hypophosphatemic rickets; X-linked hypophosphatemic
(XLH) rickets is the most common form of metabolic
rickets. ECEL1 is a brain metalloprotease involved in
the critical role in the nervous regulation of the
respiratory system, while DINE (damage induced neuronal
endopeptidase) is abundantly expressed in the
hypothalamus and its expression responds to nerve injury
as well. Thus, majority of these M13 proteases are prime
therapeutic targets for selective inhibition.
Length = 611
Score = 30.3 bits (69), Expect = 1.6
Identities = 40/194 (20%), Positives = 68/194 (35%), Gaps = 36/194 (18%)
Query: 4 VNLARQFSRTCVLERRINTRRPRPPCYEKALF---------------IEISKPKFPPNPE 48
+ F R+C+ I +P LF + + +P
Sbjct: 60 EQKIKDFYRSCMDTEAIEALGLKP--LLPLLFGLGVSPDLKNSSRNILYLDQPGLGLPDR 117
Query: 49 --YLLPSHEKCQKA---RARQWLMERKGLNEENIFQNILAKEILARFEESQMIAIVHRSS 103
YL +K + A + L G +EE+ LA+E+LA FE +A + S
Sbjct: 118 DYYLDEKSKKIRAAYKAYLAKLL-VLAGEDEEDAEA--LAEEVLA-FETE--LAKISWSE 171
Query: 104 MLAEVNREVKVVFKRVGMTMLDRYGRATIEKALTNTKYISIMPLFKVSEAIIVSPEAKVD 163
E R+ + + + + L + + Y+ + L E +IV+ +
Sbjct: 172 ---EERRDPEKTYNPMTLAELQKLA-----PGIDWKAYLEALGLPSEDEKVIVTQPDYLK 223
Query: 164 VLLKTLKKTPQLTL 177
L K L TP TL
Sbjct: 224 KLNKLLASTPLRTL 237
>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 624
Score = 30.4 bits (68), Expect = 1.7
Identities = 23/119 (19%), Positives = 34/119 (28%), Gaps = 11/119 (9%)
Query: 240 GGEGGSSASEALSGSETSGGSEGEATSNEASGESQESAKAASSSDNQGEATSSNEASGES 299
G G S+ S GS G + G A + G A ++ T S+ A
Sbjct: 374 SGGGASAPS----GSAAEGPASGGAATIPTPGTQGPQGTAPAAG-----MTPSSAAPATP 424
Query: 300 QESD--SAKAASSSQSPTESAPGGEVSKAASATDSQSSEAAPGDKVTDGKETPSTSDTD 356
S S + P G A ++ AP + P+ D
Sbjct: 425 APSAAPSPRVPWDDAPPAPPRSGIPPRPAPRMPEASPVPGAPDSVASASDAPPTLGDPS 483
>gnl|CDD|185274 PRK15376, PRK15376, pathogenicity island 1 effector protein SipA;
Provisional.
Length = 670
Score = 30.4 bits (68), Expect = 1.8
Identities = 30/160 (18%), Positives = 58/160 (36%), Gaps = 12/160 (7%)
Query: 203 QQALLVQTISSVATSLTSQLNHHSTTLVSYLDQHSGTGGEGGSSA-SEALSGS-ETSGGS 260
++ S+V+ HS + V + T + A ++G + + +
Sbjct: 335 GESHHSTNSSNVS---------HSHSRVDSTTHQTETAHSASTGAIDHGIAGKIDVTAHA 385
Query: 261 EGEATSNEASGESQESAKAASSSDNQGEATSSNEASGESQESDSAKAASSSQSPTESAPG 320
EA +N AS ES++ S GE TS +E G + +S K ++ +
Sbjct: 386 TAEAVTN-ASSESKDGKVVTSEKGTTGETTSFDEVDGVTSKSIIGKPVQATVHGVDDNKQ 444
Query: 321 GEVSKAASATDSQSSEAAPGDKVTDGKETPSTSDTDGDKS 360
+ +S+ A + V T+ G+K+
Sbjct: 445 QSQTAEIVNVKPLASQLAGVENVKTDTLQSDTTVITGNKA 484
>gnl|CDD|220634 pfam10220, DUF2146, Uncharacterized conserved protein (DUF2146).
This is a family of proteins conserved from plants to
humans. In Dictyostelium it is annotated as Mss11p but
this could not be confirmed. Mss11p is required for the
activation of pseudo-hyphal and invasive growth by
Ste12p in yeast.
Length = 890
Score = 30.2 bits (68), Expect = 1.8
Identities = 18/83 (21%), Positives = 31/83 (37%)
Query: 238 GTGGEGGSSASEALSGSETSGGSEGEATSNEASGESQESAKAASSSDNQGEATSSNEASG 297
T E S L GS TS + + AS S ++ + + + + E +
Sbjct: 573 ETDQEQPESLEPQLQGSSTSPSDASDLNFSTASSSEASSEESDNYARPTSRSGTDEEEAS 632
Query: 298 ESQESDSAKAASSSQSPTESAPG 320
++ +A + S TE PG
Sbjct: 633 KTAREKRPQALARQPSTTEYLPG 655
Score = 29.8 bits (67), Expect = 2.6
Identities = 19/93 (20%), Positives = 37/93 (39%)
Query: 247 ASEALSGSETSGGSEGEATSNEASGESQESAKAASSSDNQGEATSSNEASGESQESDSAK 306
A++ + S ++ +A A E+ + + QG +TS ++AS + + S+
Sbjct: 548 AADFENNSLSAAKKMEQAEDELADEETDQEQPESLEPQLQGSSTSPSDASDLNFSTASSS 607
Query: 307 AASSSQSPTESAPGGEVSKAASATDSQSSEAAP 339
ASS +S + P + E P
Sbjct: 608 EASSEESDNYARPTSRSGTDEEEASKTAREKRP 640
>gnl|CDD|223023 PHA03249, PHA03249, DNA packaging tegument protein UL25;
Provisional.
Length = 653
Score = 30.4 bits (68), Expect = 2.0
Identities = 24/128 (18%), Positives = 36/128 (28%), Gaps = 8/128 (6%)
Query: 223 NHHSTTLVSYLDQHSGTGGEGGSSASEALSGSETSGGSEGEATSNEASGESQESAKAASS 282
N S +VS D S E G A G + + A++
Sbjct: 58 NKSSFEVVSETDSGSEAEAERGRRAG---MGGRNKATKPSRRNKTTQCRPTSLALATAAT 114
Query: 283 SDNQGEATSSNEASGESQESDSAKAASSSQSPTESAPGGEVSKAASATDSQSSEAAPG-D 341
+ S + S S + S E GG+ S +QS A
Sbjct: 115 MPATPSSGKSPKVSSPP----SIPSLSEEDEGAERNSGGDDSSHTDNESTQSQPEADDEP 170
Query: 342 KVTDGKET 349
+ +G E
Sbjct: 171 DLAEGHEF 178
>gnl|CDD|177447 PHA02664, PHA02664, hypothetical protein; Provisional.
Length = 534
Score = 30.0 bits (67), Expect = 2.0
Identities = 18/100 (18%), Positives = 36/100 (36%)
Query: 262 GEATSNEASGESQESAKAASSSDNQGEATSSNEASGESQESDSAKAASSSQSPTESAPGG 321
G A + A+ E + S E ++ A+ + +D A + +
Sbjct: 385 GAAAAMIAAAERAANGARGSPMAAPEEGRAAAAAAAANAPADQDVEAEAHDEFDQDPGAP 444
Query: 322 EVSKAASATDSQSSEAAPGDKVTDGKETPSTSDTDGDKSS 361
+ A + + E GD+ DG++ +S + SS
Sbjct: 445 AHADRADSDEDDMDEQESGDERADGEDDSDSSYSYSTTSS 484
>gnl|CDD|221526 pfam12316, Dsh_C, Segment polarity protein dishevelled (Dsh) C
terminal. This domain family is found in eukaryotes,
and is typically between 177 and 207 amino acids in
length. The family is found in association with
pfam00778, pfam02377, pfam00610, pfam00595. The segment
polarity gene dishevelled (dsh) is required for pattern
formation of the embryonic segments. It is involved in
the determination of body organisation through the
Wingless pathway (analogous to the Wnt-1 pathway).
Length = 202
Score = 29.5 bits (66), Expect = 2.1
Identities = 26/105 (24%), Positives = 40/105 (38%), Gaps = 10/105 (9%)
Query: 236 HSGTGGEGGSSASEALSGSETSGGSEGEATSNEASGESQESAKAASSSDNQGEATSSNEA 295
+S G GS SE GS +SG + + E S + S + E+ ++ +
Sbjct: 59 YSYGSGSAGSQHSE---GSRSSGSNR---SDGERSRAADGREGGRKSGGSGSESEHTSRS 112
Query: 296 SGESQESDSAKAASSSQSPTESAPGGEVSKAASATDSQSSEAAPG 340
A + S P+E + V + S S SS APG
Sbjct: 113 GSRRSGGRRAPSERSGPPPSEGS----VRSSLSHPSSHSSYGAPG 153
>gnl|CDD|183558 PRK12495, PRK12495, hypothetical protein; Provisional.
Length = 226
Score = 29.5 bits (66), Expect = 2.1
Identities = 21/111 (18%), Positives = 42/111 (37%), Gaps = 11/111 (9%)
Query: 259 GSEGEATSNEASGESQESAKAASSSDNQGEATSSNEASGESQESDSAKAASSSQSPTESA 318
+E A ++A ++ +A + + S + + A E+ + + ASS+ + E+A
Sbjct: 68 VTEDGAAGDDAGDGAEATAPSDAGSQASPDDDAQPAAEAEAADQSAPPEASSTSATDEAA 127
Query: 319 --PGGEVSKAASATDSQSSEAA---------PGDKVTDGKETPSTSDTDGD 358
P + T +++ A V+ TPST D
Sbjct: 128 TDPPATAAARDGPTPDPTAQPATPDERRSPRQRPPVSGEPPTPSTPDAHVA 178
Score = 29.1 bits (65), Expect = 3.3
Identities = 16/82 (19%), Positives = 29/82 (35%), Gaps = 3/82 (3%)
Query: 281 SSSDNQGEATSSNEASGESQESDSAKAASSSQSPTESAPGGEVSKAASATDSQSSEAAPG 340
+ D S+ S S + D+ AA + + + P + + SATD +++
Sbjct: 77 DAGDGAEATAPSDAGSQASPDDDAQPAAEAEAADQSAPPE---ASSTSATDEAATDPPAT 133
Query: 341 DKVTDGKETPSTSDTDGDKSSR 362
DG T+ R
Sbjct: 134 AAARDGPTPDPTAQPATPDERR 155
>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 700
Score = 29.8 bits (67), Expect = 2.3
Identities = 23/118 (19%), Positives = 43/118 (36%), Gaps = 3/118 (2%)
Query: 245 SSASEALSGSETSGGSEGEATSNEASGESQESAKAASSSDNQGEATSSNEASGESQESDS 304
S A EAL+ + + A + A AA A+ + + +
Sbjct: 427 SPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAAR---PAAAGPRPVAAAAAAAPARA 483
Query: 305 AKAASSSQSPTESAPGGEVSKAASATDSQSSEAAPGDKVTDGKETPSTSDTDGDKSSR 362
A AA+ + + + P E+ ++ +AAP V + P+T+D D +
Sbjct: 484 APAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETL 541
>gnl|CDD|130057 TIGR00984, 3a0801s03tim44, mitochondrial import inner membrane,
translocase subunit. The mitochondrial protein
translocase (MPT) family, which brings nuclearly encoded
preproteins into mitochondria, is very complex with 19
currently identified protein constituents.These proteins
include several chaperone proteins, four proteins of the
outer membrane translocase (Tom) import receptor, five
proteins of the Tom channel complex, five proteins of
the inner membrane translocase (Tim) and three "motor"
proteins. This family is specific for the Tim proteins
[Transport and binding proteins, Amino acids, peptides
and amines].
Length = 378
Score = 29.8 bits (67), Expect = 2.4
Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 4/81 (4%)
Query: 286 QGEATSSNEASGESQESDSAKAASSSQSPTESAPGGEVSKAASATDSQSSEAA--PGDKV 343
+ S+E G++ + ES G ++ KA + T ++E + V
Sbjct: 44 ESGTLKSSEVVGKTLGKLGDTMKKMAHKAWESELGKKMKKAGAETAKTAAEHVDKSAEPV 103
Query: 344 TDGK--ETPSTSDTDGDKSSR 362
D + S S DG SSR
Sbjct: 104 RDTAVYKHVSQSMKDGKDSSR 124
>gnl|CDD|233367 TIGR01349, PDHac_trf_mito, pyruvate dehydrogenase complex
dihydrolipoamide acetyltransferase, long form. This
model represents one of several closely related clades
of the dihydrolipoamide acetyltransferase subunit of the
pyruvate dehydrogenase complex. It includes sequences
from mitochondria and from alpha and beta branches of
the proteobacteria, as well as from some other bacteria.
Sequences from Gram-positive bacteria are not included.
The non-enzymatic homolog protein X, which serves as an
E3 component binding protein, falls within the clade
phylogenetically but is rejected by its low score
[Energy metabolism, Pyruvate dehydrogenase].
Length = 436
Score = 29.8 bits (67), Expect = 2.4
Identities = 9/50 (18%), Positives = 21/50 (42%)
Query: 294 EASGESQESDSAKAASSSQSPTESAPGGEVSKAASATDSQSSEAAPGDKV 343
E+S S A ++ S + +P + ++ + S+ GD++
Sbjct: 91 ESSASPAPKPSEIAPTAPPSAPKPSPAPQKQSPEPSSPAPLSDKESGDRI 140
>gnl|CDD|224346 COG1429, CobN, Cobalamin biosynthesis protein CobN and related
Mg-chelatases [Coenzyme metabolism].
Length = 1388
Score = 30.1 bits (68), Expect = 2.6
Identities = 15/81 (18%), Positives = 28/81 (34%), Gaps = 1/81 (1%)
Query: 239 TGGEGGSSASEALSGSETSGGSEGEATSNEASGESQESAKAASSSDNQGEATSSNEASGE 298
T + AS E+ G + S+ +S S A S +D+ G + + +
Sbjct: 1287 TRYAAFAPASATPGAPESVGTTAVSTASSASSATVTGSD-AGSGADSTGPSLGAAGSVTG 1345
Query: 299 SQESDSAKAASSSQSPTESAP 319
+ E + S S +
Sbjct: 1346 AGEGYEMTKEAVSGSESTGMS 1366
Score = 28.9 bits (65), Expect = 5.0
Identities = 27/136 (19%), Positives = 46/136 (33%), Gaps = 10/136 (7%)
Query: 228 TLVSYLDQHSGTGGEGGSSASEALSGSETSGGSEGEATSNEASGESQESAKAASSSDNQG 287
TL + ++ E G + G+ S E E+A A++
Sbjct: 1233 TLRLLAEVYAELVAENGVACCHHTCGNPALDEWVLGLVSVPGVPELVEAATYAATRYAAF 1292
Query: 288 EATSSNEASGES--QESDSAKAASSSQSPTESAPGGEVSKAASATDSQSSEAAPGDKVTD 345
S+ + ES + S +++SS + T S A +T A +
Sbjct: 1293 APASATPGAPESVGTTAVSTASSASSATVTGSD----AGSGADSTGPSLGAAGSVTGAGE 1348
Query: 346 G----KETPSTSDTDG 357
G KE S S++ G
Sbjct: 1349 GYEMTKEAVSGSESTG 1364
>gnl|CDD|148051 pfam06213, CobT, Cobalamin biosynthesis protein CobT. This family
consists of several bacterial cobalamin biosynthesis
(CobT) proteins. CobT is involved in the transformation
of precorrin-3 into cobyrinic acid.
Length = 282
Score = 29.4 bits (66), Expect = 2.8
Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
Query: 268 EASGESQESAKAASSSD-NQGEATSSNEASGESQESDSAKAASSSQSPTESAPGGEVSKA 326
E G+ ESA + + D + + ++ E + S + S + +E GE+ A
Sbjct: 210 EELGDEPESADSEDNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSEEMESGEMEAA 269
Query: 327 ASATDSQSSE 336
++ D
Sbjct: 270 EASADDTPDS 279
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family. Atrophin-1 is the
protein product of the dentatorubral-pallidoluysian
atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive
neurodegenerative disorder. It is caused by the
expansion of a CAG repeat in the DRPLA gene on
chromosome 12p. This results in an extended
polyglutamine region in atrophin-1, that is thought to
confer toxicity to the protein, possibly through
altering its interactions with other proteins. The
expansion of a CAG repeat is also the underlying defect
in six other neurodegenerative disorders, including
Huntington's disease. One interaction of expanded
polyglutamine repeats that is thought to be pathogenic
is that with the short glutamine repeat in the
transcriptional coactivator CREB binding protein, CBP.
This interaction draws CBP away from its usual nuclear
location to the expanded polyglutamine repeat protein
aggregates that are characteristic of the polyglutamine
neurodegenerative disorders. This interferes with
CBP-mediated transcription and causes cytotoxicity.
Length = 979
Score = 29.7 bits (66), Expect = 3.0
Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 7/93 (7%)
Query: 252 SGSETSGGSEGEATSNEASGESQESAKAASSSDNQGEATSSNEASGESQESDSAKAAS-- 309
S E G EGE++ + + E S DN+ ++S + S + ESDS +A
Sbjct: 114 SEGEGEGEGEGESSDSRSVNEEGSSDPKDIDQDNR--SSSPSIPSPQDNESDSDSSAQQQ 171
Query: 310 ---SSQSPTESAPGGEVSKAASATDSQSSEAAP 339
P+ P G ++ + S++A P
Sbjct: 172 LLQPQGPPSIQVPPGAALAPSAPPPTPSAQAVP 204
>gnl|CDD|220102 pfam09073, BUD22, BUD22. BUD22 has been shown in yeast to be a
nuclear protein involved in bud-site selection. It plays
a role in positioning the proximal bud pole signal. More
recently it has been shown to be involved in ribosome
biogenesis.
Length = 424
Score = 29.4 bits (66), Expect = 3.0
Identities = 32/136 (23%), Positives = 49/136 (36%), Gaps = 10/136 (7%)
Query: 234 DQHSGTGGEGGSSASEALSGSETS---GGSEGEATSNEASGESQESAKAASSSDNQGEAT 290
+ S + S SE S SE S + E +++ SQ SSD +
Sbjct: 163 AKESSDKDDEEESESEDESKSEESAEDDSDDEEEEDSDSEDYSQYDGMLVDSSDEEEGEE 222
Query: 291 SSN------EASGESQESDSAKAASSSQSPT-ESAPGGEVSKAASATDSQSSEAAPGDKV 343
+ + + ES ESDS + S S S + ES+P + K + + G
Sbjct: 223 APSINYNEDTSESESDESDSEISESRSVSDSEESSPPSKKPKEKKTSSTFLPSLMGGYFS 282
Query: 344 TDGKETPSTSDTDGDK 359
E D D D+
Sbjct: 283 GSEDEDDDDEDIDPDQ 298
>gnl|CDD|233034 TIGR00584, mug, mismatch-specific thymine-DNA glycosylate (mug).
All proteins in this family for whcih functions are
known are G-T or G-U mismatch glycosylases that function
in base excision repair. This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University). Used 2pf model [DNA metabolism,
DNA replication, recombination, and repair].
Length = 328
Score = 29.3 bits (65), Expect = 3.4
Identities = 22/90 (24%), Positives = 32/90 (35%), Gaps = 13/90 (14%)
Query: 275 ESAKAASSSDNQGEATSSN------------EASGESQESDSAKAASSSQSPTESAPGGE 322
E+ + +DN EA + E +E+ A + +Q P+E AP
Sbjct: 1 EAEDTGTKNDNSSEANLTVKKQQRSADAPNMALVEEQEETSGVPAKAPTQEPSEEAPKFR 60
Query: 323 VSKAASATDSQSSEAA-PGDKVTDGKETPS 351
K S + E P D GK T S
Sbjct: 61 KRKPRSNEPYRPVEPKKPSDSKKSGKSTKS 90
>gnl|CDD|218673 pfam05642, Sporozoite_P67, Sporozoite P67 surface antigen. This
family consists of several Theileria P67 surface
antigens. A stage specific surface antigen of Theileria
parva, p67, is the basis for the development of an
anti-sporozoite vaccine for the control of East Coast
fever (ECF) in cattle. The antigen has been shown to
contain five distinct linear peptide sequences
recognised by sporozoite-neutralising murine monoclonal
antibodies.
Length = 727
Score = 29.6 bits (66), Expect = 3.4
Identities = 20/105 (19%), Positives = 34/105 (32%), Gaps = 3/105 (2%)
Query: 240 GGEGGSSASEALSGSETSGGSEGEATSNEASGESQESA--KAASSSDNQGEATSSNEASG 297
G GG + ++ EG+ ++ G++TSS +
Sbjct: 222 VGVGGLGGVPGVGILASNTSREGQTQDDQERDGDGRVIEPGVGLPGVRVGDSTSSPSTTR 281
Query: 298 ESQESDSAKAASSSQSPTESAPGGEVSKAASATDSQSSE-AAPGD 341
S + + ASS S + +TDS S +PG
Sbjct: 282 PSGSTTTTTPASSGPSAPGGPGSSSRNAVTRSTDSISGPIPSPGA 326
>gnl|CDD|191716 pfam07263, DMP1, Dentin matrix protein 1 (DMP1). This family
consists of several mammalian dentin matrix protein 1
(DMP1) sequences. The dentin matrix acidic
phosphoprotein 1 (DMP1) gene has been mapped to human
chromosome 4q21. DMP1 is a bone and teeth specific
protein initially identified from mineralised dentin.
DMP1 is primarily localised in the nuclear compartment
of undifferentiated osteoblasts. In the nucleus, DMP1
acts as a transcriptional component for activation of
osteoblast-specific genes like osteocalcin. During the
early phase of osteoblast maturation, Ca(2+) surges into
the nucleus from the cytoplasm, triggering the
phosphorylation of DMP1 by a nuclear isoform of casein
kinase II. This phosphorylated DMP1 is then exported out
into the extracellular matrix, where it regulates
nucleation of hydroxyapatite. DMP1 is a unique molecule
that initiates osteoblast differentiation by
transcription in the nucleus and orchestrates
mineralised matrix formation extracellularly, at later
stages of osteoblast maturation. The DMP1 gene has been
found to be ectopically expressed in lung cancer
although the reason for this is unknown.
Length = 514
Score = 29.2 bits (65), Expect = 3.7
Identities = 47/179 (26%), Positives = 80/179 (44%), Gaps = 15/179 (8%)
Query: 188 SKTETEMYATTNLATQQALLVQTISSVAT---SLTSQLNHHSTTLVSYLDQHSGTGGEGG 244
S++E++ + N + + + VQ SS ++ L SQ N S + + + G +
Sbjct: 308 SRSESQEDSEENQSQEDSQEVQDPSSESSQEADLPSQENS-SESQEEVVSESRGDNPDNT 366
Query: 245 SSASEALSGSETSGG------SEGEATSNEASGESQESAKAASSSDNQGEATSSNEASGE 298
+S SE SE+S S E+ S E +S+ + +SS ++ N +S E
Sbjct: 367 TSHSEDQEDSESSEEDSLDTPSSSESQSTEEQADSESNESLSSSEESPESTEDENSSSQE 426
Query: 299 SQESDSAKAASSSQSPTESAPGGEVSKAASATDSQSSEAAPGDKVTDGKETPSTSDTDG 357
+S SA S SQ ES + +DSQ S + D ++ E+ S+S+ DG
Sbjct: 427 GLQSHSASTESRSQ---ESQSEQDSRSEEDDSDSQDSSRSKED--SNSTESASSSEEDG 480
>gnl|CDD|223479 COG0402, SsnA, Cytosine deaminase and related metal-dependent
hydrolases [Nucleotide transport and metabolism /
General function prediction only].
Length = 421
Score = 29.3 bits (66), Expect = 3.7
Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 4/49 (8%)
Query: 82 LAKEILARFEESQMIAIVHRSSMLAEVNREVKVVFKRVGMTMLDRYGRA 130
L + + + + +H LAE EV+ V + G ++R
Sbjct: 199 LLESLDELARKYGLPVHIH----LAETLDEVERVLEPYGARPVERLDLL 243
>gnl|CDD|226920 COG4547, CobT, Cobalamin biosynthesis protein CobT
(nicotinate-mononucleotide:5, 6-dimethylbenzimidazole
phosphoribosyltransferase) [Coenzyme metabolism].
Length = 620
Score = 29.0 bits (65), Expect = 4.7
Identities = 19/94 (20%), Positives = 37/94 (39%), Gaps = 3/94 (3%)
Query: 265 TSNEASGES-QESAKAASSSDNQGEATSSNEASGESQESDSAKAASSSQSPTESAPGGEV 323
+ E + +E A D+Q + +EA E E +++ GE+
Sbjct: 218 MAEETGDDGIEEDADEEDGDDDQPDNNEDSEAGREESEGSDESEEDEAEATDGEGEEGEM 277
Query: 324 SKAASATDSQSSEAAPG-DKVTDGKETPSTSDTD 356
A ++ DS+S E+ + + P+T T+
Sbjct: 278 DAAEASEDSESDESDEDTETPGEDAR-PATPFTE 310
>gnl|CDD|184543 PRK14157, PRK14157, heat shock protein GrpE; Provisional.
Length = 227
Score = 28.4 bits (63), Expect = 4.8
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 242 EGGSSASEALSGSETSGGSEGEATSNEASGESQESAKAASSSDNQGEATSSNEASGESQE 301
E A++A SG++ S S GE + A ++ A AA ++ GEA ++ E +GE+Q
Sbjct: 20 EAQGQAAQASSGADASAES-GEQQDSAAQADANAGADAAPAAAE-GEAKAAAEKTGEAQS 77
Query: 302 SDSAKAASSSQSPTESA 318
Q+ E+A
Sbjct: 78 DSDDTLTPLGQAKKEAA 94
>gnl|CDD|219408 pfam07423, DUF1510, Protein of unknown function (DUF1510). This
family consists of several hypothetical bacterial
proteins of around 200 residues in length. The function
of this family is unknown.
Length = 214
Score = 28.5 bits (64), Expect = 5.1
Identities = 14/77 (18%), Positives = 28/77 (36%), Gaps = 3/77 (3%)
Query: 254 SETSGGSEGEATSNEASGESQESAKAASSSDNQGEATSSNEASGESQESDSAKAASSSQS 313
E + E E E +E K A++S+++ + + + ES+E + + SS
Sbjct: 49 QEAKKSDDQETAEIE---EVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDE 105
Query: 314 PTESAPGGEVSKAASAT 330
+ S
Sbjct: 106 NEKETEEKTESNVEKEI 122
>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau;
Validated.
Length = 830
Score = 29.0 bits (65), Expect = 5.3
Identities = 14/84 (16%), Positives = 31/84 (36%)
Query: 256 TSGGSEGEATSNEASGESQESAKAASSSDNQGEATSSNEASGESQESDSAKAASSSQSPT 315
T GG+ G +G A+++ + +G + + + KAA+++ +
Sbjct: 363 TGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATR 422
Query: 316 ESAPGGEVSKAASATDSQSSEAAP 339
AP + A+A +
Sbjct: 423 AEAPPAAPAPPATADRGDDAADGD 446
>gnl|CDD|225711 COG3170, FimV, Tfp pilus assembly protein FimV [Cell motility and
secretion / Intracellular trafficking and secretion].
Length = 755
Score = 28.7 bits (64), Expect = 5.4
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 272 ESQESAKAASSSDNQGE-ATSSNE-ASGESQESDSAKAASSSQSPTESAPGGEVSKAASA 329
++ A A ++ D E AT+ + A S ES A+ S + AP GE+++A SA
Sbjct: 321 KAAPLAAAQAALDAPAETATAPSAPAPQVSAESSPAQPGSYLLAAPGDAPLGELAQAQSA 380
Query: 330 TDSQSSEAAP 339
+ + E+ P
Sbjct: 381 RERLAEESVP 390
>gnl|CDD|236571 PRK09565, PRK09565, hypothetical protein; Reviewed.
Length = 533
Score = 28.6 bits (64), Expect = 6.1
Identities = 18/102 (17%), Positives = 31/102 (30%), Gaps = 7/102 (6%)
Query: 209 QTISSVATSLTSQLNHHSTTLVSYLDQHSGTGGEGGSSASEALSGSETSGGSEGEATSNE 268
+ + + + T +H GG G E G E SGG G N
Sbjct: 259 ERVPTATPEDAADGGTGGTHDAEEFGEHGHHGGHPGGEDGEHPHGHEDSGGHHGSGGDNF 318
Query: 269 ASGESQ-------ESAKAASSSDNQGEATSSNEASGESQESD 303
+ + + S + +GE + +G+ D
Sbjct: 319 DHYDRHVATTVRADGGREDSDEEIRGELADAGVYAGQPHGED 360
>gnl|CDD|115751 pfam07117, DUF1373, Protein of unknown function (DUF1373). This
family consists of several hypothetical proteins which
seem to be specific to Oryzias latipes (Japanese
ricefish). Members of this family are typically around
200 residues in length. The function of this family is
unknown.
Length = 210
Score = 28.2 bits (62), Expect = 6.2
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 235 QHSGTGGEGGSSASEALSGSETSGGSEGEATSNEASGESQESAKAASSSDNQGE 288
Q SG G G +S + SGS+ S GS+G + S E +SSSD++ E
Sbjct: 95 QSSGYGSYGSVDSSYSGSGSQQS-GSQGAQSGAPGSQHQVEQESWSSSSDDEDE 147
>gnl|CDD|234371 TIGR03839, termin_org_P1, adhesin P1. Members of this protein
family are the major adhesin of the Mycoplasma terminal
organelle. The protein is called adhesin P1, cytadhesin
P1, P140, attachment protein, and MgPa, with locus names
MG191 in Mycoplasma genitalium and MPN141 in M.
pneumoniae. A conserved C-terminal region is shared by
additional paralogs in M. pneumoniae and M.
gallisepticum, as well as by the member of this family
[Cell envelope, Surface structures, Cellular processes,
Pathogenesis].
Length = 1425
Score = 28.6 bits (63), Expect = 6.5
Identities = 18/87 (20%), Positives = 29/87 (33%), Gaps = 11/87 (12%)
Query: 245 SSASEALSGSETSGGSEGEATSNEASGESQESAKAASSSDNQGEATSS--------NEAS 296
+AS A SGS +S G A +E + +SS + N S
Sbjct: 238 GTASSAGSGSSSSAAGGGAVAPTAAKALKREVEEGSSSGMGTMLPKNDTAETPIKYNSDS 297
Query: 297 GES---QESDSAKAASSSQSPTESAPG 320
G+ + + +S S + P
Sbjct: 298 GKIVKLKALLDSTESSESINGGRWRPW 324
>gnl|CDD|221581 pfam12446, DUF3682, Protein of unknown function (DUF3682). This
domain family is found in eukaryotes, and is typically
between 125 and 136 amino acids in length.
Length = 133
Score = 27.5 bits (61), Expect = 6.6
Identities = 29/89 (32%), Positives = 35/89 (39%), Gaps = 12/89 (13%)
Query: 238 GTGGEGGSSASEALSGSETSGGSEGEATSNEASGESQESAKAASSSDNQGEATSSNEAS- 296
G G G SS S A + G + A G +A SS GEA SS S
Sbjct: 4 GDGTGGVSSGSSAPAPPAGPGPGPNAPPAPAAPG----VDSSAGSSG--GEAGSSGSNSS 57
Query: 297 ---GESQESD--SAKAASSSQSPTESAPG 320
G+S D A AA+ + SP E G
Sbjct: 58 NTTGDSSTGDQSPAAAAAHNSSPPEGPAG 86
>gnl|CDD|165587 PHA03343, PHA03343, US22 family homolog; Provisional.
Length = 578
Score = 28.5 bits (63), Expect = 6.9
Identities = 14/76 (18%), Positives = 26/76 (34%)
Query: 240 GGEGGSSASEALSGSETSGGSEGEATSNEASGESQESAKAASSSDNQGEATSSNEASGES 299
E +G + + + S E+ E A AA+++ A ++ GE
Sbjct: 114 AAAAEKGEEEEEAGDKIEPPAVRGSVSPIRGHETVEGAAAAATAATSAAACDGDDGGGED 173
Query: 300 QESDSAKAASSSQSPT 315
D K + +P
Sbjct: 174 GGEDGGKGIGGACAPP 189
>gnl|CDD|221427 pfam12114, Period_C, Period protein 2/3C-terminal region. This
domain is found in eukaryotes. This domain is typically
between 164 to 200 amino acids in length. This domain is
found associated with pfam08447.
Length = 190
Score = 27.8 bits (62), Expect = 7.2
Identities = 17/64 (26%), Positives = 28/64 (43%)
Query: 242 EGGSSASEALSGSETSGGSEGEATSNEASGESQESAKAASSSDNQGEATSSNEASGESQE 301
+ S A SGS +SG + SN +S S S+K S D E + + + ++ E
Sbjct: 19 DSQSGTGSAASGSGSSGSGSLGSGSNGSSSGSSNSSKYFGSIDMSSENSHKAKKTQDTHE 78
Query: 302 SDSA 305
+
Sbjct: 79 EEQF 82
>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding
protein OppF; Provisional.
Length = 331
Score = 28.1 bits (63), Expect = 7.7
Identities = 37/137 (27%), Positives = 61/137 (44%), Gaps = 24/137 (17%)
Query: 59 KARARQWLMERKGLNEENIFQNILAKEILARFEESQMIA----IVHRSSMLAEVNREVKV 114
+ +W R + + IFQ+ LA + R ++IA H EV VK
Sbjct: 87 GMKDDEWRAVRSDI--QMIFQDPLA-SLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKA 143
Query: 115 VFKRVGM--TMLDRY---------GRATIEKALTNTKYISIM--PLFKVSEAIIVSPEAK 161
+ +VG+ +++RY R I +AL + I P VS A+ VS +A+
Sbjct: 144 MMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEP---VS-ALDVSIQAQ 199
Query: 162 VDVLLKTLKKTPQLTLM 178
V LL+ L++ L+L+
Sbjct: 200 VVNLLQQLQREMGLSLI 216
>gnl|CDD|215641 PLN03237, PLN03237, DNA topoisomerase 2; Provisional.
Length = 1465
Score = 28.3 bits (63), Expect = 8.4
Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
Query: 277 AKAASSSDNQGEATSSNEASGESQESDSAKAASSSQSPTESAPGGEVSKAASATDSQSSE 336
A S E EA G S E K +S P G + +AA+ +++SSE
Sbjct: 1358 ATVQSGQKLLTEMLKPAEAIGISPEKKVRKMRAS---PFNKKSGSVLGRAATNKETESSE 1414
Query: 337 AAPG 340
G
Sbjct: 1415 NVSG 1418
>gnl|CDD|114172 pfam05432, BSP_II, Bone sialoprotein II (BSP-II). Bone
sialoprotein (BSP) is a major structural protein of the
bone matrix that is specifically expressed by
fully-differentiated osteoblasts. The expression of bone
sialoprotein (BSP) is normally restricted to mineralised
connective tissues of bones and teeth where it has been
associated with mineral crystal formation. However, it
has been found that ectopic expression of BSP occurs in
various lesions, including oral and extraoral
carcinomas, in which it has been associated with the
formation of microcrystalline deposits and the
metastasis of cancer cells to bone.
Length = 291
Score = 27.7 bits (61), Expect = 9.0
Identities = 29/132 (21%), Positives = 52/132 (39%), Gaps = 12/132 (9%)
Query: 242 EGGSSASEALSGSETSGGSEGEATSNEASG--ESQESAKAASSSDNQ----------GEA 289
+ GS +SE ++S E TSNE +S + + ++N G+A
Sbjct: 45 QSGSDSSEENGDGDSSEEEGEEETSNEEENNEDSDGNEDEEAEAENTTLSTVTLGYGGDA 104
Query: 290 TSSNEASGESQESDSAKAASSSQSPTESAPGGEVSKAASATDSQSSEAAPGDKVTDGKET 349
T G + KA ++ + T+ E + + + +E ++ T+G T
Sbjct: 105 TPGTGNIGLAALQLPKKAGNAGKKATKEDESDEDEEEEEEEEEEEAEVEENEQGTNGTST 164
Query: 350 PSTSDTDGDKSS 361
ST G+ SS
Sbjct: 165 NSTEVDHGNGSS 176
>gnl|CDD|220856 pfam10714, LEA_6, Late embryogenesis abundant protein 18. This is
a family of late embryogenesis-abundant proteins There
is high accumulation of this protein in dry seeds, and
in the roots of full-grown plants in response to
dehydration and ABA (abscisic acid application)
treatments. This LEA protein disappears after
germination. It accumulates in growing regions of well
irrigated hypocotyls and meristems suggesting a role in
seedling growth resumption on rehydration. As a group
the LEA proteins are highly hydrophilic, contain a high
percentage of glycine residues, lack Cys and Trp
residues and do not coagulate upon exposure to high
temperature, and for these reasons are considered to be
members of a group of proteins called hydrophilins.
Expression of the protein is negatively regulated during
etiolating growth, particularly in roots, in contrast to
its expression patterns during normal growth.
Length = 77
Score = 26.0 bits (57), Expect = 9.8
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 300 QESDSAKAASSSQSPTESAPGGEVSKAASATDSQSSEAAP 339
QE + ++ +PT S AASATD+++ + P
Sbjct: 38 QEPKPGRGGGATDAPTPSGAAVSSDAAASATDAKNRKGVP 77
>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23. All proteins
in this family for which functions are known are
components of a multiprotein complex used for targeting
nucleotide excision repair to specific parts of the
genome. In humans, Rad23 complexes with the XPC protein.
This family is based on the phylogenomic analysis of JA
Eisen (1999, Ph.D. Thesis, Stanford University) [DNA
metabolism, DNA replication, recombination, and repair].
Length = 378
Score = 27.9 bits (62), Expect = 9.8
Identities = 8/58 (13%), Positives = 16/58 (27%)
Query: 304 SAKAASSSQSPTESAPGGEVSKAASATDSQSSEAAPGDKVTDGKETPSTSDTDGDKSS 361
A A++ S P S A+ + + +S + + S
Sbjct: 84 VAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPS 141
>gnl|CDD|236126 PRK07899, rpsA, 30S ribosomal protein S1; Reviewed.
Length = 486
Score = 27.7 bits (62), Expect = 10.0
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 268 EASGESQESAKAASSSDNQGEATSSNEASGESQESDSAKAA 308
+A+ +A A+S S + ++SS +G + SD AA
Sbjct: 437 KAAAAEAAAAAASSESSSSASSSSSEAEAGGTLASDEQLAA 477
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.306 0.120 0.317
Gapped
Lambda K H
0.267 0.0587 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,519,656
Number of extensions: 1516098
Number of successful extensions: 1979
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1749
Number of HSP's successfully gapped: 259
Length of query: 362
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 264
Effective length of database: 6,590,910
Effective search space: 1740000240
Effective search space used: 1740000240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 60 (27.2 bits)