RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9196
(362 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 49.7 bits (118), Expect = 1e-06
Identities = 47/268 (17%), Positives = 79/268 (29%), Gaps = 83/268 (30%)
Query: 93 SQ---MIAIVHRSSM-LAEVNREVKVVFKRVGMTMLDRYGRATIEKALTNTKYISIMPLF 148
SQ M M L + ++ + V+ R D YG + ++ + N ++I
Sbjct: 1626 SQEQGM-------GMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGG 1678
Query: 149 KVSEAI-----IVSPEAKVDVLLKTLKKTPQLTLMATIV----DNRLLSKTETEMYATTN 199
+ + I + E VD LKT K ++ +T + LLS T+
Sbjct: 1679 EKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQ-------F 1731
Query: 200 LATQQALLVQTISSVATSLTSQLNH------------HS----TTLVSY----------- 232
TQ AL + A L HS L S
Sbjct: 1732 --TQPALTL---MEKA--AFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVE 1784
Query: 233 -------LDQHSGTGGEGGSS--ASEALSGSETSGGSEGEATSN---EASGESQESAKAA 280
Q + E G S A++ + EA + +
Sbjct: 1785 VVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIV 1844
Query: 281 SSSDNQGEATSSNE---ASGESQESDSA 305
+ N N+ A+G+ + D+
Sbjct: 1845 --NYN-----VENQQYVAAGDLRALDTV 1865
Score = 42.0 bits (98), Expect = 3e-04
Identities = 45/266 (16%), Positives = 78/266 (29%), Gaps = 97/266 (36%)
Query: 19 RINTRRPRPPCYEKALFIEISKPKFPPNPEYLLPSHEKCQKARAR-------QWLMERKG 71
RI +RP ALF + A+ Q G
Sbjct: 130 RIMAKRPFDKKSNSALF-------------------RAVGEGNAQLVAIFGGQ------G 164
Query: 72 LNEENIFQNILAKEILARFEESQMI--AIVHRSSM----LAEVNREVKVVFKRVGMTMLD 125
N ++ F +E+ ++ ++ ++ S+ L + + VF + L+
Sbjct: 165 -NTDDYF-----EELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQG----LN 214
Query: 126 RYGRATIEKALTN------TKY-----ISIMPLFKVSEAIIVSPEAKVDVLLKTLKKTPQ 174
I + L N Y IS PL I V A V K L TP
Sbjct: 215 ------ILEWLENPSNTPDKDYLLSIPIS-CPL------IGVIQLAHYVVTAKLLGFTPG 261
Query: 175 --------LT------LMATIVDNRLLSKTETEMYATTNLATQQALLVQTISSVATSLTS 220
T + A + + + + + ++A+ V V
Sbjct: 262 ELRSYLKGATGHSQGLVTAVAI---AETDSWESFFV----SVRKAITVLFFIGVR----C 310
Query: 221 QLNHHSTTLVSYLDQHSGTGGEGGSS 246
+ +T+L + + S EG S
Sbjct: 311 YEAYPNTSLPPSILEDSLENNEGVPS 336
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets,
alpha helices, AMY amyloidosis, blood coagulation,
disease mutation, glycoprot phosphoprotein; HET: NAG NDG
BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A*
2a45_G*
Length = 562
Score = 31.4 bits (70), Expect = 0.50
Identities = 22/129 (17%), Positives = 33/129 (25%), Gaps = 3/129 (2%)
Query: 235 QHSGTGGEGGSSASEALSGSETSG--GSEGEATSNEASGESQESAKAASSSDNQGEATSS 292
G G S SGS +G G++ + S + + S + SS
Sbjct: 300 ATWKPGSSGPGSTGSWNSGSSGTGSTGNQNPGSPRPGSTGTWNPGSSERGSAGHWTSESS 359
Query: 293 NEASGESQESDSAKAASSSQSPTESAPGGEVSKAASATDSQSSEAAPGDKVTDGKETPST 352
S S+S S + P S + T K S
Sbjct: 360 VSGSTGQWHSESGSFRPDSPGSGNARPNNPDWGTFEEVSGNVSPGTRREYHT-EKLVTSK 418
Query: 353 SDTDGDKSS 361
D +
Sbjct: 419 GDKELRTGK 427
Score = 29.8 bits (66), Expect = 1.4
Identities = 20/123 (16%), Positives = 36/123 (29%), Gaps = 3/123 (2%)
Query: 237 SGTGGEGGSSASEALSGSETSGGSEGEATSN--EASGESQESAKAASSSDNQGEATSSNE 294
S SS S + + GS + A + + S N T
Sbjct: 350 SAGHWTSESSVSGSTGQWHSESGSFRPDSPGSGNARPNNPDWGTFEEVSGNVSPGTRREY 409
Query: 295 ASGESQESDSAKAASSSQSPTESAPGGEVSKAASATDSQSSEAAPGDKVTDGKETPSTSD 354
+ + S K + + S ++ S T +++ G K KE ++ D
Sbjct: 410 HTEKLVTSKGDKELRTGKEKVTSGSTTTTRRSCSKTVTKTVIGPDGHKEV-TKEVVTSED 468
Query: 355 TDG 357
Sbjct: 469 GSD 471
Score = 29.5 bits (65), Expect = 2.1
Identities = 20/129 (15%), Positives = 33/129 (25%), Gaps = 3/129 (2%)
Query: 237 SGTGGEGGSSASEALSGSETSGGSEGEATSNEASG--ESQESAKAASSSDNQGEATSSNE 294
SGTG G + GS + + ES S G +
Sbjct: 320 SGTGSTGNQNPGSPRPGSTGTWNPGSSERGSAGHWTSESSVSGSTGQWHSESGSFRPDSP 379
Query: 295 ASGESQESDSAKAASSSQSP-TESAPGGEVSKAASATDSQSSEAAPGDKVTDGKETPSTS 353
SG ++ ++ S E T E G + T +T
Sbjct: 380 GSGNARPNNPDWGTFEEVSGNVSPGTRREYHTEKLVTSKGDKELRTGKEKVTSGSTTTTR 439
Query: 354 DTDGDKSSR 362
+ ++
Sbjct: 440 RSCSKTVTK 448
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 29.2 bits (64), Expect = 2.3
Identities = 11/63 (17%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 30 YEKALFIEISKPKFPPNPEYLLPSHEKCQKARARQWLMERKGLNEENIFQNILAKEILAR 89
YE+ + ++ P + + LL H + A + + + +++FQ LA ++ +
Sbjct: 335 YEQQMGQKVQLP--TESLQELLDLHRDS-EREAIEVFIRSSFKDVDHLFQKELAAQLEKK 391
Query: 90 FEE 92
++
Sbjct: 392 RDD 394
>3n1s_A HIT-like protein HINT; histidine triad nucleotide binding
protein, GMP, hydro; HET: 5GP; 1.45A {Escherichia coli}
PDB: 3n1t_A*
Length = 119
Score = 27.5 bits (62), Expect = 2.8
Identities = 8/27 (29%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 74 EENIFQNILAKEILAR--FEESQMIAI 98
EE IF I+ +EI + +++ + A
Sbjct: 3 EETIFSKIIRREIPSDIVYQDDLVTAF 29
>3iax_B Colicin-A; TOLB, TOLB BOX, complex, protein transport, trans
antibiotic, antimicrobial, bacteriocin, cell membrane,
MEMB transmembrane; 2.60A {Citrobacter freundii}
Length = 115
Score = 27.1 bits (59), Expect = 3.9
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 238 GTGGEGGSSASEALSGSETSGGSEGEATSNEASGESQESAKAAS 281
G G+G +SE SG E GGS G + ++ S ++ +
Sbjct: 7 GGKGDGTGWSSERGSGPEPGGGSHGNSGGHDRGDSSNVGNESVT 50
>1e6b_A Glutathione S-transferase; 1.65A {Arabidopsis thaliana} SCOP:
a.45.1.1 c.47.1.5
Length = 221
Score = 27.6 bits (62), Expect = 5.3
Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 3/26 (11%)
Query: 42 KFPPNPEYLLPSHEKCQKARARQWLM 67
K+P P LLP ++A Q +
Sbjct: 83 KYPEPP--LLPRDLH-KRAVNYQAMS 105
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.2 bits (59), Expect = 6.3
Identities = 7/53 (13%), Positives = 18/53 (33%), Gaps = 25/53 (47%)
Query: 129 RATIEKALTNTKYISIMPLFKVSEAIIVSPEAKVDVLLKTLKKTPQLTLMATI 181
+ ++K L + + L+ + ++ P L + AT+
Sbjct: 19 KQALKK-LQAS-----LKLY--------ADDS-----------APALAIKATM 46
>2uv8_G Fatty acid synthase subunit beta (FAS1); fatty acid biosynthesis,
malonyl/palmitoyl transferase, phosphopantetheine,
transferase; HET: GVL FMN; 3.10A {Saccharomyces
cerevisiae} PDB: 2vkz_G* 3hmj_G*
Length = 2051
Score = 27.7 bits (61), Expect = 9.0
Identities = 20/122 (16%), Positives = 42/122 (34%), Gaps = 10/122 (8%)
Query: 99 VHRSSM---LAEVNREVKVVFKRVGMTMLDRYGRATIEKALTNTKYISIMPLFKVSEAII 155
M L + ++ + V+ R D YG + ++ + N ++I + + I
Sbjct: 1671 SQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIR 1730
Query: 156 VSPEAKV--DVLLKTLKKTPQLTLMATIVDNRLLSKTETEMYATTNLATQQALLVQTISS 213
+ A + ++ LK + + + + AT TQ AL +
Sbjct: 1731 ENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQF--TQPALTL---ME 1785
Query: 214 VA 215
A
Sbjct: 1786 KA 1787
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.306 0.120 0.317
Gapped
Lambda K H
0.267 0.0467 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,790,272
Number of extensions: 273636
Number of successful extensions: 356
Number of sequences better than 10.0: 1
Number of HSP's gapped: 352
Number of HSP's successfully gapped: 22
Length of query: 362
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 267
Effective length of database: 4,049,298
Effective search space: 1081162566
Effective search space used: 1081162566
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 58 (26.8 bits)