RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9196
         (362 letters)



>d2ozla1 c.36.1.11 (A:1-361) E1-beta subunit of pyruvate
           dehydrogenase (PP module) {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 361

 Score = 32.2 bits (72), Expect = 0.10
 Identities = 7/93 (7%), Positives = 21/93 (22%), Gaps = 10/93 (10%)

Query: 1   DCTVNLARQFSRTCVLERRINTRRPRPPCYEKALFIEISKPKFPPNPEYLLPSHEKCQKA 60
                  R      ++   + T R                  +    E      +     
Sbjct: 238 RFAAAYCRSGKGPILM--ELQTYRYHGHEMS------DPGVSYRTREEIQEVRSKSDPIM 289

Query: 61  RARQWLMERKGLNEENIFQNILAKEILARFEES 93
             +  ++     + E +    +  E+    E++
Sbjct: 290 LLKDRMVNSNLASVEEL--KEIDVEVRKEIEDA 320


>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId:
           2336]}
          Length = 308

 Score = 31.2 bits (69), Expect = 0.17
 Identities = 7/77 (9%), Positives = 24/77 (31%), Gaps = 1/77 (1%)

Query: 46  NPEYLLPSHEKCQKARARQWLMERKGLNEENIFQNILAKEILARFEESQMIAIVHRSSML 105
               L       +   +  ++++      ++       + +    + +Q I I H   ++
Sbjct: 226 ALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVM 285

Query: 106 AEVNREVKVVFKRVGMT 122
              +     V    G++
Sbjct: 286 EAADLLHG-VTMVNGVS 301


>g1xew.1 c.37.1.12 (X:,Y:) Smc head domain {Pyrococcus furiosus
           [TaxId: 2261]}
          Length = 329

 Score = 30.7 bits (68), Expect = 0.25
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 2/46 (4%)

Query: 72  LNEENIFQNILAKEILARFEESQMIAIVHRSSMLAEVNREVKVVFK 117
           L++ N+    +A  I    +ESQ I I  R  M+A  ++ + V  +
Sbjct: 259 LDDANV--KRVADLIKESSKESQFIVITLRDVMMANADKIIGVSMR 302


>d1gpua3 c.48.1.1 (A:535-680) Transketolase (TK), C-domain {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 146

 Score = 28.9 bits (64), Expect = 0.60
 Identities = 7/92 (7%), Positives = 31/92 (33%), Gaps = 2/92 (2%)

Query: 10  FSRTCVLERRINTRRPRPPCYEKALFIEISKPKFPPNPEYLLPSHEKCQKARARQWLMER 69
                  ++ +  R    P     + +E+          +     ++   +     + + 
Sbjct: 55  PDFFTFDKQPLEYRLSVLPDNVPIMSVEVLATTCWGKYAHQSFGIDRFGASGKAPEVFKF 114

Query: 70  KGLNEENIFQNILAKEILARFEESQMIAIVHR 101
            G   E + +    ++ +A ++  ++I+ + +
Sbjct: 115 FGFTPEGVAERA--QKTIAFYKGDKLISPLKK 144


>d1s57a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Thale
           cress (Arabidopsis thaliana), chloroplast NDK2 [TaxId:
           3702]}
          Length = 153

 Score = 26.1 bits (57), Expect = 4.4
 Identities = 9/33 (27%), Positives = 11/33 (33%)

Query: 85  EILARFEESQMIAIVHRSSMLAEVNREVKVVFK 117
            I           IVH S       RE+ + FK
Sbjct: 104 TIRGDLAVQTGRNIVHGSDSPENGKREIGLWFK 136


>d1wkja1 d.58.6.1 (A:1-137) Nucleoside diphosphate kinase, NDK
           {Thermus thermophilus [TaxId: 274]}
          Length = 137

 Score = 25.7 bits (56), Expect = 5.6
 Identities = 8/32 (25%), Positives = 16/32 (50%)

Query: 86  ILARFEESQMIAIVHRSSMLAEVNREVKVVFK 117
           I   F  +    ++H S+ L +  RE+ + F+
Sbjct: 101 IRGDFATTIDENVIHGSATLEDAQREIALFFR 132


>d1hlwa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK
           {Dictyostelium discoideum [TaxId: 44689]}
          Length = 150

 Score = 25.8 bits (56), Expect = 6.8
 Identities = 8/30 (26%), Positives = 12/30 (40%)

Query: 88  ARFEESQMIAIVHRSSMLAEVNREVKVVFK 117
             F       I+  S  +   NRE+ + FK
Sbjct: 105 GDFGVDVGRNIIAGSDSVESANREIALWFK 134


>d1w7wa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Pea
           (Pisum sativum) [TaxId: 3888]}
          Length = 151

 Score = 25.4 bits (55), Expect = 9.5
 Identities = 8/33 (24%), Positives = 11/33 (33%)

Query: 85  EILARFEESQMIAIVHRSSMLAEVNREVKVVFK 117
            I           I+H S        E+K+ FK
Sbjct: 102 TIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFK 134


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.306    0.120    0.317 

Gapped
Lambda     K      H
   0.267   0.0435    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,097,607
Number of extensions: 46673
Number of successful extensions: 104
Number of sequences better than 10.0: 1
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 14
Length of query: 362
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 276
Effective length of database: 1,226,816
Effective search space: 338601216
Effective search space used: 338601216
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 53 (24.9 bits)