Query psy9197
Match_columns 154
No_of_seqs 56 out of 58
Neff 3.5
Searched_HMMs 46136
Date Fri Aug 16 21:22:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9197.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9197hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1785|consensus 100.0 6.9E-75 1.5E-79 518.4 14.5 152 3-154 37-188 (563)
2 PF02262 Cbl_N: CBL proto-onco 100.0 3.9E-75 8.4E-80 451.2 10.3 129 5-133 2-130 (130)
3 PF10224 DUF2205: Predicted co 73.2 4.5 9.7E-05 29.5 3.1 18 67-84 51-68 (80)
4 PF10112 Halogen_Hydrol: 5-bro 70.0 50 0.0011 26.3 8.8 108 10-123 74-184 (199)
5 PF08385 DHC_N1: Dynein heavy 68.7 40 0.00086 30.1 8.7 70 15-87 97-166 (579)
6 PF11155 DUF2935: Domain of un 66.8 4.6 0.0001 30.0 2.1 52 72-123 65-116 (124)
7 KOG0486|consensus 54.4 7.6 0.00017 35.3 1.6 28 102-132 110-137 (351)
8 PF03778 DUF321: Protein of un 50.1 3.7 8.1E-05 23.3 -0.6 8 145-152 2-9 (20)
9 PF06419 COG6: Conserved oligo 46.7 1.5E+02 0.0031 28.3 8.8 80 11-95 371-458 (618)
10 KOG2923|consensus 43.5 8.7 0.00019 27.6 0.2 12 132-143 27-38 (67)
11 PLN03075 nicotianamine synthas 40.9 48 0.001 29.1 4.5 101 15-133 33-154 (296)
12 smart00546 CUE Domain that may 39.7 18 0.0004 22.2 1.3 14 115-128 2-15 (43)
13 cd07635 BAR_GRAF2 The Bin/Amph 36.6 25 0.00055 29.6 2.0 19 11-29 9-27 (207)
14 COG1460 Uncharacterized protei 35.6 18 0.0004 28.2 1.0 43 15-62 52-95 (114)
15 PF09823 DUF2357: Domain of un 34.2 63 0.0014 25.8 3.9 56 67-125 164-225 (248)
16 PF14868 DUF4487: Domain of un 34.0 2E+02 0.0043 27.6 7.7 106 6-121 422-534 (559)
17 PHA02965 hypothetical protein; 33.2 92 0.002 29.2 5.1 47 47-93 375-437 (466)
18 PF02845 CUE: CUE domain; Int 30.6 33 0.00072 21.1 1.4 12 117-128 3-14 (42)
19 PF08839 CDT1: DNA replication 29.9 90 0.002 24.5 4.0 47 11-62 6-61 (163)
20 PF12972 NAGLU_C: Alpha-N-acet 29.2 72 0.0016 27.2 3.6 51 3-60 60-110 (267)
21 PF09537 DUF2383: Domain of un 29.1 2E+02 0.0044 20.3 5.5 47 76-124 6-52 (111)
22 PF09660 DUF2397: Protein of u 28.8 1.8E+02 0.0039 27.1 6.3 86 6-94 113-217 (486)
23 PRK15341 invasion lipoprotein 28.5 15 0.00032 29.5 -0.6 21 129-150 82-102 (147)
24 COG0831 UreA Urea amidohydrola 26.2 32 0.0007 26.4 0.9 54 69-131 36-91 (100)
25 PF12441 DUF3680: Protein of u 25.9 32 0.00069 22.3 0.7 11 140-150 11-21 (42)
26 PF14688 DUF4461: Domain of un 25.5 27 0.00059 30.6 0.4 82 37-132 213-307 (313)
27 smart00582 RPR domain present 25.2 1.3E+02 0.0027 21.6 3.8 15 79-93 94-108 (121)
28 PF05527 DUF758: Domain of unk 25.2 2.6E+02 0.0056 23.4 6.0 48 73-120 113-182 (186)
29 PF13657 Couple_hipA: HipA N-t 24.1 33 0.00072 24.2 0.6 22 37-60 53-74 (99)
30 TIGR02284 conserved hypothetic 24.0 1.7E+02 0.0036 22.4 4.5 72 76-152 5-82 (139)
31 TIGR03071 couple_hipA HipA N-t 24.0 26 0.00057 24.8 0.0 23 36-60 54-76 (101)
32 PF01417 ENTH: ENTH domain; I 23.4 2.2E+02 0.0048 20.9 4.9 64 11-93 57-122 (125)
33 PF13971 Mei4: Meiosis-specifi 23.2 6E+02 0.013 23.5 10.5 68 14-90 167-234 (375)
34 PF10983 DUF2793: Protein of u 23.2 70 0.0015 23.4 2.1 26 14-41 2-27 (87)
35 cd08674 Cdt1_m The middle wing 23.2 1.1E+02 0.0024 24.9 3.5 49 8-61 21-78 (185)
36 smart00288 VHS Domain present 22.8 65 0.0014 24.4 2.0 22 9-30 50-71 (133)
37 PF02671 PAH: Paired amphipath 22.7 2E+02 0.0042 17.8 3.9 36 46-94 1-36 (47)
38 COG4755 Uncharacterized protei 22.4 3.7E+02 0.008 22.0 6.3 60 66-125 7-67 (151)
39 PRK07085 diphosphate--fructose 22.2 1.8E+02 0.0039 27.9 5.1 97 38-138 309-416 (555)
40 PF10428 SOG2: RAM signalling 21.5 5.7E+02 0.012 23.6 8.1 71 7-95 295-366 (445)
41 PF10112 Halogen_Hydrol: 5-bro 21.4 1.3E+02 0.0028 23.9 3.5 56 13-73 135-190 (199)
42 TIGR02677 conserved hypothetic 21.1 3.3E+02 0.0071 25.6 6.6 84 6-93 112-214 (494)
43 PF12692 Methyltransf_17: S-ad 20.7 58 0.0013 26.9 1.4 14 47-60 41-54 (160)
44 PF06511 IpaD: Invasion plasmi 20.4 3.7E+02 0.0081 24.5 6.5 52 100-152 182-238 (337)
No 1
>KOG1785|consensus
Probab=100.00 E-value=6.9e-75 Score=518.39 Aligned_cols=152 Identities=68% Similarity=1.172 Sum_probs=148.8
Q ss_pred CCCchhhhhHHHHHHHHHHHHHHHccCCCCCCCCCCCcccchhhHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHH
Q psy9197 3 PPKLATDKRTLDKTWKLMDKVVKLCQHPKMNLKNSPPFLLDILPDTYQRLKLIYTKYEDKMIVLHNNEFFNVFIVNLMRK 82 (154)
Q Consensus 3 ~~~~~~D~r~~~k~~klmdkvv~lC~~prLnLknSPP~ildiLpdt~q~L~~I~~~~~~~~~~l~~~~yl~i~i~nL~~K 82 (154)
.+....|||+|+||||+|||||++|||||||||||||||+|||||||||||.|+++|++.++.+.+||||.|||+|||+|
T Consensus 37 ~~~~~~dkr~l~k~~klmdkvv~~C~~Prl~lknSPP~ilDiLPdTyqhLrli~s~~~d~~~~~~~ndy~~ifl~nlm~K 116 (563)
T KOG1785|consen 37 VPSTVLDKRTLEKAWKLMDKVVKLCQNPRLNLKNSPPFILDILPDTYQHLRLILSKNEDIMQLLPENDYLKIFLENLMKK 116 (563)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhcCccccccCCCcHHHHhchhHHHHHHHHHHhhhhhhccCccccHHHHHHHHHHHH
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhchhhhhccchhhhhhhhhHHHHHHHHHHHHhhhCCCCeecCCcceeecccHHHHHHhhcCCC
Q psy9197 83 CKQAIKLFKEGKEKMYDESSHYRRNLTKLSLVFSHMLSELKAIFPNGVFAGDQFRITKSDAADFWRNNFGNA 154 (154)
Q Consensus 83 ~kq~~~LfK~~~e~mf~E~S~~RR~LtKLsLiFSHMlaELkAlFP~G~f~g~~friTK~~A~~FWr~~FG~~ 154 (154)
|||||+|||+++|+||+|+|++|||||||||||||||+||||+||+|.||||+|||||+||++|||++||++
T Consensus 117 ~kq~i~Lfk~~~e~my~e~S~~RRnLtKlsliFSHMlaElkalFP~G~~~gd~friTKadA~~FWr~~fg~k 188 (563)
T KOG1785|consen 117 CKQAIKLFKESAERMYEEQSQERRNLTKLSLIFSHMLAELKALFPNGIYQGDRFRITKADAAEFWRKHFGKK 188 (563)
T ss_pred HHHHHHHHHHhHHHHHhhccHHhhhhHHHHHHHHHHHHHHHhhCCCCeeecceeeeccccHHHHHHHhcCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999974
No 2
>PF02262 Cbl_N: CBL proto-oncogene N-terminal domain 1; InterPro: IPR003153 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the N-terminal four-helical bundle domain.; GO: 0004871 signal transducer activity, 0007166 cell surface receptor linked signaling pathway, 0005634 nucleus; PDB: 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B 3BUW_B 1B47_C 3BUO_D ....
Probab=100.00 E-value=3.9e-75 Score=451.24 Aligned_cols=129 Identities=66% Similarity=1.110 Sum_probs=118.5
Q ss_pred CchhhhhHHHHHHHHHHHHHHHccCCCCCCCCCCCcccchhhHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHH
Q psy9197 5 KLATDKRTLDKTWKLMDKVVKLCQHPKMNLKNSPPFLLDILPDTYQRLKLIYTKYEDKMIVLHNNEFFNVFIVNLMRKCK 84 (154)
Q Consensus 5 ~~~~D~r~~~k~~klmdkvv~lC~~prLnLknSPP~ildiLpdt~q~L~~I~~~~~~~~~~l~~~~yl~i~i~nL~~K~k 84 (154)
..++|+|+++|+||+|||||++|||||||||||||||+||||||||||++|+++|++++++|++||||+|||+||++|||
T Consensus 2 ~~~~D~r~~~k~~klldkl~~lC~~prLnLknSPP~l~diLpdt~q~L~~I~~~~~~~~~~l~~~~yl~i~l~NL~~K~k 81 (130)
T PF02262_consen 2 CSSIDRRTLDKAVKLLDKLVKLCQDPRLNLKNSPPYLLDILPDTYQHLRLIFSRYEDDMEPLGENDYLRIFLANLEAKCK 81 (130)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHT-GGG--TSSSS-HHHHHHHHHHHHHHHHHHCTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCcHHHhhHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHH
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhchhhhhccchhhhhhhhhHHHHHHHHHHHHhhhCCCCeecC
Q psy9197 85 QAIKLFKEGKEKMYDESSHYRRNLTKLSLVFSHMLSELKAIFPNGVFAG 133 (154)
Q Consensus 85 q~~~LfK~~~e~mf~E~S~~RR~LtKLsLiFSHMlaELkAlFP~G~f~g 133 (154)
||++|||+|+|+||+|+|++||||||||||||||||||+|+||+|+|||
T Consensus 82 q~~~LfK~~~e~~f~e~S~~RR~LtKLsLiFSHMlaELkAlFP~G~f~g 130 (130)
T PF02262_consen 82 QAAKLFKEAKEKMFDEGSRYRRQLTKLSLIFSHMLAELKALFPDGKFCG 130 (130)
T ss_dssp HHHHHHHHHGGGGGSTTCHHHHHHHHHHHHHHHHHHHHHHHSGGGS--G
T ss_pred HHHHHHHhCHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHhCCCCccCC
Confidence 9999999999999999999999999999999999999999999999998
No 3
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=73.18 E-value=4.5 Score=29.52 Aligned_cols=18 Identities=33% Similarity=0.600 Sum_probs=15.8
Q ss_pred CchhHHHHHHHHHHHHHH
Q psy9197 67 HNNEFFNVFIVNLMRKCK 84 (154)
Q Consensus 67 ~~~~yl~i~i~nL~~K~k 84 (154)
++|+||+=||.|||+.+.
T Consensus 51 ~EN~~Lq~YI~nLm~~s~ 68 (80)
T PF10224_consen 51 SENEYLQQYIGNLMSSSS 68 (80)
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 699999999999998653
No 4
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=69.98 E-value=50 Score=26.29 Aligned_cols=108 Identities=11% Similarity=0.179 Sum_probs=78.7
Q ss_pred hhHHHHHHHHHHHHHHHccCCCCCCCCCCCcccchhhHHHHHHHHHHhhhhcc-ccccCchhHHHHHHHHHHHHHHHHHH
Q psy9197 10 KRTLDKTWKLMDKVVKLCQHPKMNLKNSPPFLLDILPDTYQRLKLIYTKYEDK-MIVLHNNEFFNVFIVNLMRKCKQAIK 88 (154)
Q Consensus 10 ~r~~~k~~klmdkvv~lC~~prLnLknSPP~ildiLpdt~q~L~~I~~~~~~~-~~~l~~~~yl~i~i~nL~~K~kq~~~ 88 (154)
+++++.+-..++++.+.=.. ..-+-+..-+-++.+..+.|+..=+.+ ...-....|+..|+-++.+=...=+.
T Consensus 74 ~~~l~ea~~~i~~i~~~~~~------i~~~~~~~~~~~~~~~~~~I~~~v~~~P~~l~~a~~Fl~~yLp~~~~l~~kY~~ 147 (199)
T PF10112_consen 74 REILEEAKEKIRRIEKAIKR------IRDLEMIEKVSRIEKIARRIFKYVEKDPERLTQARKFLYYYLPTAVKLLEKYAE 147 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHH------cCCHHHHHHHHHHHHHHHHHHHHHHHCHHhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 56788888777777765432 222334567778888888888755443 23446789999999999887777777
Q ss_pred Hhhhc--hhhhhccchhhhhhhhhHHHHHHHHHHHHh
Q psy9197 89 LFKEG--KEKMYDESSHYRRNLTKLSLVFSHMLSELK 123 (154)
Q Consensus 89 LfK~~--~e~mf~E~S~~RR~LtKLsLiFSHMlaELk 123 (154)
|=+.. .+++..--.+.|.-|..|+-.|...+.+|-
T Consensus 148 l~~~~~~~~~~~~~l~e~~~~L~~l~~~f~~~~~~l~ 184 (199)
T PF10112_consen 148 LESQPVKSEEIKQSLEEIEETLDTLNQAFEKDLDKLL 184 (199)
T ss_pred HHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76543 367777778899999999999999887763
No 5
>PF08385 DHC_N1: Dynein heavy chain, N-terminal region 1; InterPro: IPR013594 Dynein heavy chains interact with other heavy chains to form dimers, and with intermediate chain-light chain complexes to form a basal cargo binding unit []. The region featured in this family includes the sequences implicated in mediating these interactions []. It is thought to be flexible and not to adopt a rigid conformation [].
Probab=68.67 E-value=40 Score=30.12 Aligned_cols=70 Identities=10% Similarity=0.194 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHccCCCCCCCCCCCcccchhhHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHH
Q psy9197 15 KTWKLMDKVVKLCQHPKMNLKNSPPFLLDILPDTYQRLKLIYTKYEDKMIVLHNNEFFNVFIVNLMRKCKQAI 87 (154)
Q Consensus 15 k~~klmdkvv~lC~~prLnLknSPP~ildiLpdt~q~L~~I~~~~~~~~~~l~~~~yl~i~i~nL~~K~kq~~ 87 (154)
...+.|.-+.+.|..= . ..+|+-+.+.+|.+..+|+.||..-+--..+-+-...|+..-..++.+|+..+
T Consensus 97 d~~~fL~~l~~~~~~l--~-~~~~~~i~~~i~~l~~~l~~iw~~S~~y~~~~R~~~Ll~~isn~ii~~~~~~l 166 (579)
T PF08385_consen 97 DNNKFLKPLEPPFELL--E-ASDLSEIQESIPPLFHHLRLIWRISRYYYPPERMTSLLEKISNQIIQKCQKYL 166 (579)
T ss_pred HHHHHHHHHHHHHHhh--c-cCCHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHHHHHHh
Confidence 3567788888888873 2 57999999999999999999998643112334455566665566888888777
No 6
>PF11155 DUF2935: Domain of unknown function (DUF2935); InterPro: IPR021328 This family of proteins with unknown function appears to be restricted to Firmicutes. ; PDB: 3D19_B 3DBY_P.
Probab=66.81 E-value=4.6 Score=29.99 Aligned_cols=52 Identities=13% Similarity=0.145 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchhhhhccchhhhhhhhhHHHHHHHHHHHHh
Q psy9197 72 FNVFIVNLMRKCKQAIKLFKEGKEKMYDESSHYRRNLTKLSLVFSHMLSELK 123 (154)
Q Consensus 72 l~i~i~nL~~K~kq~~~LfK~~~e~mf~E~S~~RR~LtKLsLiFSHMlaELk 123 (154)
..--+..|..++..++.-|.+=+.++-+..-..+=.-+-.-++..||+.|-.
T Consensus 65 ~~~~~~~l~~~~~~~~~~~~~Fk~~l~~~~~~~~i~~~l~P~l~~Hi~rEa~ 116 (124)
T PF11155_consen 65 LVPALSQLNQEALEASQEFINFKKELLELILSCKIFSNLYPLLIDHIIREAE 116 (124)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSTBSS-HHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccchHHHHHHHHHHH
Confidence 4445777888888888888777777777666665444445789999999964
No 7
>KOG0486|consensus
Probab=54.39 E-value=7.6 Score=35.29 Aligned_cols=28 Identities=36% Similarity=0.425 Sum_probs=24.0
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhhhCCCCeec
Q psy9197 102 SHYRRNLTKLSLVFSHMLSELKAIFPNGVFA 132 (154)
Q Consensus 102 S~~RR~LtKLsLiFSHMlaELkAlFP~G~f~ 132 (154)
|.-|||-| =.|||||.||++.|--.+|-
T Consensus 110 ~KqrrQrt---hFtSqqlqele~tF~rNryp 137 (351)
T KOG0486|consen 110 SKQRRQRT---HFTSQQLQELEATFQRNRYP 137 (351)
T ss_pred hhhhhhhh---hhHHHHHHHHHHHHhhccCC
Confidence 57788887 45899999999999988875
No 8
>PF03778 DUF321: Protein of unknown function (DUF321) ; InterPro: IPR005529 This entry represents a group of tandem repeats, found in Arabidopsis species, whose sequence is distantly related to the FARP (FMRFamide) group of neuropeptides (IPR002544 from INTERPRO). The function of these repeats is not known, being mostly found in uncharacterised proetins, but they are also present in the nuclear migration protein NUM1 [].
Probab=50.06 E-value=3.7 Score=23.25 Aligned_cols=8 Identities=63% Similarity=1.531 Sum_probs=6.9
Q ss_pred HHHHhhcC
Q psy9197 145 DFWRNNFG 152 (154)
Q Consensus 145 ~FWr~~FG 152 (154)
.|||+|.|
T Consensus 2 rFwreN~g 9 (20)
T PF03778_consen 2 RFWRENHG 9 (20)
T ss_pred ccceeecC
Confidence 49999987
No 9
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=46.72 E-value=1.5e+02 Score=28.29 Aligned_cols=80 Identities=19% Similarity=0.318 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHHHHHH-ccCCCCCCCCCCCcccchhhHHHHHHHHHHhhhhccccccC--c--hhHHHH---HHHHHHHH
Q psy9197 11 RTLDKTWKLMDKVVKL-CQHPKMNLKNSPPFLLDILPDTYQRLKLIYTKYEDKMIVLH--N--NEFFNV---FIVNLMRK 82 (154)
Q Consensus 11 r~~~k~~klmdkvv~l-C~~prLnLknSPP~ildiLpdt~q~L~~I~~~~~~~~~~l~--~--~~yl~i---~i~nL~~K 82 (154)
+.++-.-..++++..- =+.|--. =+|| +.|-|+++.|+.|++.|+..+.+.+ + .+|=.| -|+-++..
T Consensus 371 ~f~~~l~~~~~~l~~~~~~~~~~D--L~PP---~~l~d~l~~L~~il~~~~~s~~~~~~~~~~~~~~~Il~~~idpll~~ 445 (618)
T PF06419_consen 371 KFFSSLRDHVAKLLRSAPEPPPAD--LSPP---EWLIDFLSLLREILDVYDSSLSPDDDRENDNDFKPILDEPIDPLLQM 445 (618)
T ss_pred HHHHHHHHHHHHHHhhCCCCCCCC--CCCC---HHHHHHHHHHHHHHHHhhcccCCccchhhhhHHHHHHHHHhHHHHHH
Confidence 3333444445555555 3444333 4566 6677899999999999987654332 2 333222 45566666
Q ss_pred HHHHHHHhhhchh
Q psy9197 83 CKQAIKLFKEGKE 95 (154)
Q Consensus 83 ~kq~~~LfK~~~e 95 (154)
|.+.+.-+....+
T Consensus 446 c~~~a~~L~~~~~ 458 (618)
T PF06419_consen 446 CQKSASPLAPKDD 458 (618)
T ss_pred HHHHhhccCChhh
Confidence 6666665544433
No 10
>KOG2923|consensus
Probab=43.45 E-value=8.7 Score=27.57 Aligned_cols=12 Identities=50% Similarity=0.830 Sum_probs=10.5
Q ss_pred cCCcceeecccH
Q psy9197 132 AGDQFRITKSDA 143 (154)
Q Consensus 132 ~g~~friTK~~A 143 (154)
|||.|+|||.|-
T Consensus 27 CGDrf~It~edL 38 (67)
T KOG2923|consen 27 CGDRFQITLEDL 38 (67)
T ss_pred CCCeeeecHHHH
Confidence 899999999764
No 11
>PLN03075 nicotianamine synthase; Provisional
Probab=40.89 E-value=48 Score=29.14 Aligned_cols=101 Identities=20% Similarity=0.234 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHccCCCCC--CCCCCCcccchhhHHHHHHHHHHhhhhc---------------cccccCchhHHHHHHH
Q psy9197 15 KTWKLMDKVVKLCQHPKMN--LKNSPPFLLDILPDTYQRLKLIYTKYED---------------KMIVLHNNEFFNVFIV 77 (154)
Q Consensus 15 k~~klmdkvv~lC~~prLn--LknSPP~ildiLpdt~q~L~~I~~~~~~---------------~~~~l~~~~yl~i~i~ 77 (154)
....+..+||.+|..|.-- -+-|++ | -++...|+.+++.-|. +.+.|+.=.|+.-|+
T Consensus 33 ~v~~lf~~Lv~~c~~~~~~~~~~l~~~-i----~~~~~~l~~l~~~ae~~lE~~~a~~i~~~~~p~~~l~~Fpy~~nY~- 106 (296)
T PLN03075 33 EVNTLFTQLVSTCIPPSSIDVTKLCEE-I----QEMRSKLIKLCGEAEGLLEAHFSTILGSFDNPLDHLNLFPYYNNYL- 106 (296)
T ss_pred hHHHHHHHHHHHhCCCCcchHHHhhHH-H----HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHhhcCCchHHHH-
Confidence 4467889999999976542 123333 3 3344456777774432 233344445555554
Q ss_pred HHHHHHHHHHHHh----hhchhhhhccchhhhhhhhhHHHHHHHHHHHHhhhCCCCeecC
Q psy9197 78 NLMRKCKQAIKLF----KEGKEKMYDESSHYRRNLTKLSLVFSHMLSELKAIFPNGVFAG 133 (154)
Q Consensus 78 nL~~K~kq~~~Lf----K~~~e~mf~E~S~~RR~LtKLsLiFSHMlaELkAlFP~G~f~g 133 (154)
+=++.-..++ ..+.+++.+-||-. =-+| |+++ +.+.||+|+|.|
T Consensus 107 ---~L~~lE~~~L~~~~~~~p~~VldIGcGp-gplt--aiil------aa~~~p~~~~~g 154 (296)
T PLN03075 107 ---KLSKLEFDLLSQHVNGVPTKVAFVGSGP-LPLT--SIVL------AKHHLPTTSFHN 154 (296)
T ss_pred ---HHHHHHHHHHHHhhcCCCCEEEEECCCC-cHHH--HHHH------HHhcCCCCEEEE
Confidence 4444443333 44678889888862 1112 3333 345689999976
No 12
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=39.68 E-value=18 Score=22.23 Aligned_cols=14 Identities=43% Similarity=0.748 Sum_probs=12.1
Q ss_pred HHHHHHHHhhhCCC
Q psy9197 115 FSHMLSELKAIFPN 128 (154)
Q Consensus 115 FSHMlaELkAlFP~ 128 (154)
...++..|+.+||+
T Consensus 2 ~~~~v~~L~~mFP~ 15 (43)
T smart00546 2 NDEALHDLKDMFPN 15 (43)
T ss_pred hHHHHHHHHHHCCC
Confidence 45789999999997
No 13
>cd07635 BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase 2 (GRAF2), also called Rho GTPase activating protein 10 (ARHGAP10) or PS-GAP, is a GAP with activity towards Cdc42 and RhoA which regulates caspase-activated p21-activated protein kinase-2 (PAK-2p34). GRAF2 interacts with PAK-2p34, leading to its stabilization and decrease of cell death. It is highly expressed in skeletal muscle and also interacts with PKNbeta, which is a target of Rho. GRAF2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of the related prote
Probab=36.56 E-value=25 Score=29.56 Aligned_cols=19 Identities=16% Similarity=0.352 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHHHccC
Q psy9197 11 RTLDKTWKLMDKVVKLCQH 29 (154)
Q Consensus 11 r~~~k~~klmdkvv~lC~~ 29 (154)
..|||+.|++++|+|.|..
T Consensus 9 ~~le~~~k~i~kLiK~c~~ 27 (207)
T cd07635 9 AELERTNRFIKELLKDGKN 27 (207)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3689999999999999975
No 14
>COG1460 Uncharacterized protein conserved in archaea [Function unknown]
Probab=35.57 E-value=18 Score=28.16 Aligned_cols=43 Identities=26% Similarity=0.447 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHcc-CCCCCCCCCCCcccchhhHHHHHHHHHHhhhhcc
Q psy9197 15 KTWKLMDKVVKLCQ-HPKMNLKNSPPFLLDILPDTYQRLKLIYTKYEDK 62 (154)
Q Consensus 15 k~~klmdkvv~lC~-~prLnLknSPP~ildiLpdt~q~L~~I~~~~~~~ 62 (154)
++-++.+.|+.+-+ +++..-| |.||+|.|-.-||.|++.++-.
T Consensus 52 ~a~e~veEL~~i~~~~e~~avk-----IadI~P~t~~ElRsIla~e~~~ 95 (114)
T COG1460 52 KARELVEELLSIVKMSEKIAVK-----IADIMPRTPDELRSILAKERVM 95 (114)
T ss_pred HHHHHHHHHHhhccccHHHHHH-----HHHhCCCCHHHHHHHHHHccCC
Confidence 44555566666555 4444433 8999999999999999998753
No 15
>PF09823 DUF2357: Domain of unknown function (DUF2357); InterPro: IPR018633 This entry was previously the N-terminal portion of DUF524 (IPR007505 from INTERPRO) before it was split into two. This domain has no known function. It is predicted to adopt an all beta secondary structure pattern followed by mainly alpha-helical structures [].
Probab=34.23 E-value=63 Score=25.80 Aligned_cols=56 Identities=21% Similarity=0.455 Sum_probs=37.1
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHhhhchhh-----hhccchhhhhhhhhHHHHHHH-HHHHHhhh
Q psy9197 67 HNNEFFNVFIVNLMRKCKQAIKLFKEGKEK-----MYDESSHYRRNLTKLSLVFSH-MLSELKAI 125 (154)
Q Consensus 67 ~~~~yl~i~i~nL~~K~kq~~~LfK~~~e~-----mf~E~S~~RR~LtKLsLiFSH-MlaELkAl 125 (154)
-||.|+.-+|..+..+|.+....+.+...+ +.+|-....++|.+ +.+| .+.|++.+
T Consensus 164 ~ENRfvK~~L~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~---~l~~~~f~~Vg~~ 225 (248)
T PF09823_consen 164 PENRFVKYFLQRLEKRLERLKKRLEEKQRRSETQRFLKELEEMQRELER---LLSHPFFREVGEL 225 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHH---HHcCcHhhhhccc
Confidence 489999999999999999998888655422 44444444444432 3333 55555543
No 16
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=34.00 E-value=2e+02 Score=27.62 Aligned_cols=106 Identities=15% Similarity=0.180 Sum_probs=70.4
Q ss_pred chhhhhHHHHHHHHHHHHHHHccCCCCCCCCCCCcccchhhHHHHHHHHHHhhhhccccccCchhHHH--HHHHHHH---
Q psy9197 6 LATDKRTLDKTWKLMDKVVKLCQHPKMNLKNSPPFLLDILPDTYQRLKLIYTKYEDKMIVLHNNEFFN--VFIVNLM--- 80 (154)
Q Consensus 6 ~~~D~r~~~k~~klmdkvv~lC~~prLnLknSPP~ildiLpdt~q~L~~I~~~~~~~~~~l~~~~yl~--i~i~nL~--- 80 (154)
..+|.+...-..+.+.++-..=+.... .|-||+..++--+-..+.-..+.++ ..+.-+ .-+.+++
T Consensus 422 ~~~d~~~~~~i~~ii~~lw~~~~~~~v---~~~~~l~~~~~~lL~l~~~~~~~l~-------~~~i~qv~~~l~~l~~~~ 491 (559)
T PF14868_consen 422 STIDMKDQTFIVEIISQLWSFLSSKQV---SSQPYLQQTLSLLLSLLSFFIQLLD-------PQLIEQVLTELTSLFKSE 491 (559)
T ss_pred cccCHHHHHHHHHHHHHHHHHhchhhh---ccchHHHHHHHHHHHHHHHHHHhcC-------hHHHHHHHHHHHHHHhhC
Confidence 356777666666666666665433333 4558877766655555444444432 233333 3345666
Q ss_pred --HHHHHHHHHhhhchhhhhccchhhhhhhhhHHHHHHHHHHH
Q psy9197 81 --RKCKQAIKLFKEGKEKMYDESSHYRRNLTKLSLVFSHMLSE 121 (154)
Q Consensus 81 --~K~kq~~~LfK~~~e~mf~E~S~~RR~LtKLsLiFSHMlaE 121 (154)
+.||=++.-|=.+--+||..++.-...+.+||=+|++.|+|
T Consensus 492 pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d 534 (559)
T PF14868_consen 492 PPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLAD 534 (559)
T ss_pred CCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcC
Confidence 66787877776666689999999999999999999999987
No 17
>PHA02965 hypothetical protein; Provisional
Probab=33.20 E-value=92 Score=29.17 Aligned_cols=47 Identities=21% Similarity=0.436 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhhhhccc----------------cccCchhHHHHHHHHHHHHHHHHHHHhhhc
Q psy9197 47 DTYQRLKLIYTKYEDKM----------------IVLHNNEFFNVFIVNLMRKCKQAIKLFKEG 93 (154)
Q Consensus 47 dt~q~L~~I~~~~~~~~----------------~~l~~~~yl~i~i~nL~~K~kq~~~LfK~~ 93 (154)
-+|.|-..|+......+ -.-|+|||+--||-+|+...+..+.-+|..
T Consensus 375 ~iy~hykki~~~~~~~~d~gc~~~e~~y~~nlykvygqneymityil~li~ri~~~m~~~k~n 437 (466)
T PHA02965 375 AIYDHYKKIIEDNNKRLDLGCMNIEHNYMANLYKVYGQNEYMITYILALINRIKKGMDAIKSN 437 (466)
T ss_pred HHHHHHHHHHHcccccccccceehhhHHhHHHHHHhCcchhHHHHHHHHHHHHHHHHHHHHhc
Confidence 36888888887765433 344899999999999999999888887754
No 18
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=30.60 E-value=33 Score=21.06 Aligned_cols=12 Identities=33% Similarity=0.921 Sum_probs=10.3
Q ss_pred HHHHHHhhhCCC
Q psy9197 117 HMLSELKAIFPN 128 (154)
Q Consensus 117 HMlaELkAlFP~ 128 (154)
-|+..|+.+||+
T Consensus 3 ~~v~~L~~mFP~ 14 (42)
T PF02845_consen 3 EMVQQLQEMFPD 14 (42)
T ss_dssp HHHHHHHHHSSS
T ss_pred HHHHHHHHHCCC
Confidence 478899999997
No 19
>PF08839 CDT1: DNA replication factor CDT1 like; InterPro: IPR014939 CDT1 is a component of the replication licensing system and promotes the loading of the mini-chromosome maintenance complex onto chromatin. Geminin is an inhibitor of CDT1 and prevents inappropriate re-initiation of replication on an already fired origin. This region of CDT1 binds to Geminin []. ; PDB: 2WVR_C 2ZXX_F.
Probab=29.86 E-value=90 Score=24.50 Aligned_cols=47 Identities=23% Similarity=0.406 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHHHHHHccCCCCCCCCCCCcccchhhH---------HHHHHHHHHhhhhcc
Q psy9197 11 RTLDKTWKLMDKVVKLCQHPKMNLKNSPPFLLDILPD---------TYQRLKLIYTKYEDK 62 (154)
Q Consensus 11 r~~~k~~klmdkvv~lC~~prLnLknSPP~ildiLpd---------t~q~L~~I~~~~~~~ 62 (154)
+.|.+..+.||.|+.+|.+ +|.+|....|-|. |.+||.+|..-|.+.
T Consensus 6 ~~L~~~F~~ldtv~~~l~~-----R~~~~tf~~i~~~Ve~~~kr~F~~~~LaQI~~i~P~a 61 (163)
T PF08839_consen 6 EFLAELFRALDTVVSMLRN-----RKETPTFQKIKPSVENMTKRRFTEEHLAQIKYIYPEA 61 (163)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----TT---BHHHHHHHHHHHHSS---HHHHHHHHHH-GGG
T ss_pred HHHHHHHHHHHHHHHHHHh-----cCCCccHHHHHHHHHHHhcCCcCHHHHHHHHHhCccc
Confidence 5788999999999999986 6889999888887 467888888877663
No 20
>PF12972 NAGLU_C: Alpha-N-acetylglucosaminidase (NAGLU) C-terminal domain; InterPro: IPR024732 Alpha-N-acetylglucosaminidase is a lysosomal enzyme required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase (NAGLU) gene can lead to Mucopolysaccharidosis type IIIB (MPS IIIB, or Sanfilippo syndrome type B) characterised by neurological dysfunction but relatively mild somatic manifestations []. The structure shows that the enzyme is composed of three domains. This C-terminal domain has an all alpha helical fold [].; PDB: 2VC9_A 2VCC_A 2VCB_A 2VCA_A 4A4A_A.
Probab=29.22 E-value=72 Score=27.18 Aligned_cols=51 Identities=29% Similarity=0.444 Sum_probs=34.4
Q ss_pred CCCchhhhhHHHHHHHHHHHHHHHccCCCCCCCCCCCcccchhhHHHHHHHHHHhhhh
Q psy9197 3 PPKLATDKRTLDKTWKLMDKVVKLCQHPKMNLKNSPPFLLDILPDTYQRLKLIYTKYE 60 (154)
Q Consensus 3 ~~~~~~D~r~~~k~~klmdkvv~lC~~prLnLknSPP~ildiLpdt~q~L~~I~~~~~ 60 (154)
++...-|...|.+||++|-++-. .|++||+|--|++==|.|-|...+....
T Consensus 60 ~~~~~Yd~~~l~~A~~~ll~a~~-------~l~~~~~yryDlvDvtRQvL~n~~~~~~ 110 (267)
T PF12972_consen 60 PPGIWYDPADLEKAWRLLLKAAD-------ELKDSETYRYDLVDVTRQVLSNYADELY 110 (267)
T ss_dssp -----S-HHHHHHHHHHHHHCHH-------HHTT-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhHH-------hcCCCchHHhHHHHHHHHHHHHHHHHHH
Confidence 34555688999999999887665 5678999999998888877766555443
No 21
>PF09537 DUF2383: Domain of unknown function (DUF2383); InterPro: IPR019052 This entry represents a functionally uncharacterised ferritin like domain.; PDB: 3FSE_B.
Probab=29.08 E-value=2e+02 Score=20.32 Aligned_cols=47 Identities=15% Similarity=0.246 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHhhhchhhhhccchhhhhhhhhHHHHHHHHHHHHhh
Q psy9197 76 IVNLMRKCKQAIKLFKEGKEKMYDESSHYRRNLTKLSLVFSHMLSELKA 124 (154)
Q Consensus 76 i~nL~~K~kq~~~LfK~~~e~mf~E~S~~RR~LtKLsLiFSHMlaELkA 124 (154)
|..|+..++-++.-|+.+.++.- ++.+|.-+..++-.......||.+
T Consensus 6 Ln~Ll~~~~d~~~~Y~~a~~~~~--~~~lk~~f~~~~~~~~~~~~~L~~ 52 (111)
T PF09537_consen 6 LNDLLKGLHDGIEGYEKAAEKAE--DPELKSLFQEFAQERQQHAEELQA 52 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666665554 355666666666555555555544
No 22
>PF09660 DUF2397: Protein of unknown function (DUF2397); InterPro: IPR013493 Proteins in this family are encoded within a conserved gene four-gene neighbourhood found sporadically in a phylogenetically broad range of bacteria including: Nocardia farcinica, Symbiobacterium thermophilum, Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. (strain EbN1) (Aromatoleum aromaticum (strain EbN1)) and Ralstonia solanacearum (Betaproteobacteria).
Probab=28.80 E-value=1.8e+02 Score=27.07 Aligned_cols=86 Identities=12% Similarity=0.270 Sum_probs=65.3
Q ss_pred chhhhhHHHHHHHHHHHHHHHccCCCCCCCCCCCcccchhhHHHHHHHHHHhhhhccccccC------------------
Q psy9197 6 LATDKRTLDKTWKLMDKVVKLCQHPKMNLKNSPPFLLDILPDTYQRLKLIYTKYEDKMIVLH------------------ 67 (154)
Q Consensus 6 ~~~D~r~~~k~~klmdkvv~lC~~prLnLknSPP~ildiLpdt~q~L~~I~~~~~~~~~~l~------------------ 67 (154)
.++.+-.+++....|++|..+-++|+ ..+|.=+-..+-+.+.++..+.+++.+-+..|+
T Consensus 113 gsL~~~~l~~I~~~L~~L~~~~~~~~---~~d~~~~~~~w~~L~~~f~~L~~na~df~~~L~~~~~~~~~~~e~Fl~yKd 189 (486)
T PF09660_consen 113 GSLQRTLLERILERLRALAELAESPR---EGDAAEVYEWWRDLFEDFERLAQNAQDFYASLQSVKAEEDMDTEAFLAYKD 189 (486)
T ss_pred cccchhHHHHHHHHHHHHHHHHhccC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccChhHHHHHHH
Confidence 45778899999999999999998872 134446777788888888888877776332221
Q ss_pred -chhHHHHHHHHHHHHHHHHHHHhhhch
Q psy9197 68 -NNEFFNVFIVNLMRKCKQAIKLFKEGK 94 (154)
Q Consensus 68 -~~~yl~i~i~nL~~K~kq~~~LfK~~~ 94 (154)
=.+||+=|+..|...+.++..+++.-.
T Consensus 190 ~Li~YL~~Fv~~L~r~~~~I~~~l~~l~ 217 (486)
T PF09660_consen 190 ALIDYLRRFVQDLQRRAPRIAAALRELE 217 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 257999999999999999999996543
No 23
>PRK15341 invasion lipoprotein InvH; Provisional
Probab=28.50 E-value=15 Score=29.47 Aligned_cols=21 Identities=24% Similarity=0.688 Sum_probs=18.0
Q ss_pred CeecCCcceeecccHHHHHHhh
Q psy9197 129 GVFAGDQFRITKSDAADFWRNN 150 (154)
Q Consensus 129 G~f~g~~friTK~~A~~FWr~~ 150 (154)
..|| ..|+-||.+|..|+.++
T Consensus 82 svfc-ekykqtkeqA~tFFqEh 102 (147)
T PRK15341 82 SIFC-EKYKQTKEQALTFFQEH 102 (147)
T ss_pred HHHH-HHHHHhHHHHHHHHHHh
Confidence 4578 59999999999999876
No 24
>COG0831 UreA Urea amidohydrolase (urease) gamma subunit [Amino acid transport and metabolism]
Probab=26.21 E-value=32 Score=26.37 Aligned_cols=54 Identities=24% Similarity=0.417 Sum_probs=29.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhchhhhhccchhhhhhhhhHHHHHHHHHHHH--hhhCCCCee
Q psy9197 69 NEFFNVFIVNLMRKCKQAIKLFKEGKEKMYDESSHYRRNLTKLSLVFSHMLSEL--KAIFPNGVF 131 (154)
Q Consensus 69 ~~yl~i~i~nL~~K~kq~~~LfK~~~e~mf~E~S~~RR~LtKLsLiFSHMlaEL--kAlFP~G~f 131 (154)
..++.-||-.=-+-.|-++.|...|+.=+=.++-.. =.-||+.|+ .|.||||+.
T Consensus 36 vAlIs~~i~EgaRdGktVaelM~~g~~vL~~ddVme---------GV~emi~~iqVEAtFpDGtk 91 (100)
T COG0831 36 VALISAFILEGARDGKTVAELMSEGRHVLTRDDVME---------GVPEMIHEIQVEATFPDGTK 91 (100)
T ss_pred HHHHHHHHHHhhhcCCcHHHHHHhhhhhCCHHHHhh---------cHHHHhhhheeEEEcCCCCE
Confidence 344444554444555666666665543222111100 145899986 589999975
No 25
>PF12441 DUF3680: Protein of unknown function (DUF3680) ; InterPro: IPR022148 This domain family is found in bacteria and archaea, and is approximately 40 amino acids in length.
Probab=25.91 E-value=32 Score=22.28 Aligned_cols=11 Identities=18% Similarity=0.872 Sum_probs=8.8
Q ss_pred cccHHHHHHhh
Q psy9197 140 KSDAADFWRNN 150 (154)
Q Consensus 140 K~~A~~FWr~~ 150 (154)
-.+|++||-+|
T Consensus 11 e~Ee~eFW~~h 21 (42)
T PF12441_consen 11 EEEEREFWDTH 21 (42)
T ss_pred HHHHHHHHHhc
Confidence 46899999875
No 26
>PF14688 DUF4461: Domain of unknown function (DUF4461)
Probab=25.51 E-value=27 Score=30.64 Aligned_cols=82 Identities=24% Similarity=0.420 Sum_probs=53.2
Q ss_pred CCCcccchhhHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHh---hh---chhhhhc-------cchh
Q psy9197 37 SPPFLLDILPDTYQRLKLIYTKYEDKMIVLHNNEFFNVFIVNLMRKCKQAIKLF---KE---GKEKMYD-------ESSH 103 (154)
Q Consensus 37 SPP~ildiLpdt~q~L~~I~~~~~~~~~~l~~~~yl~i~i~nL~~K~kq~~~Lf---K~---~~e~mf~-------E~S~ 103 (154)
+||-|.+.|-.-++..++..++|+.. ..-.+.|+++|++..+|- |+ +.++|.. -.-.
T Consensus 213 ~~~~L~~Fl~~~~~~A~~~~~~~~~~----------~~~e~~L~~~c~~~l~L~~L~kd~sit~~~mi~cc~rLl~~~~~ 282 (313)
T PF14688_consen 213 PPPELVDFLSENADEARERMQRYNRL----------KEEEEQLIERCRKELGLRSLTKDPSITPDQMISCCRRLLEQSEE 282 (313)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHcCchhcccCCCCCHHHHHHHHHHHHhcccc
Confidence 45566777777777777777777642 445688999999998887 32 1133332 2223
Q ss_pred hhhhhhhHHHHHHHHHHHHhhhCCCCeec
Q psy9197 104 YRRNLTKLSLVFSHMLSELKAIFPNGVFA 132 (154)
Q Consensus 104 ~RR~LtKLsLiFSHMlaELkAlFP~G~f~ 132 (154)
.+..|.-++|+.||-.+ +-+||..|
T Consensus 283 ~~~~l~g~~l~Is~~ys----v~~DG~ic 307 (313)
T PF14688_consen 283 LLPYLQGLSLCISHYYS----VLQDGDIC 307 (313)
T ss_pred cccccCCCEEEEcCccc----cCCCCcEE
Confidence 45566667777777665 66777665
No 27
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=25.20 E-value=1.3e+02 Score=21.62 Aligned_cols=15 Identities=13% Similarity=0.421 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHhhhc
Q psy9197 79 LMRKCKQAIKLFKEG 93 (154)
Q Consensus 79 L~~K~kq~~~LfK~~ 93 (154)
...|+.+++.+.++.
T Consensus 94 ~~~ki~kll~iW~~~ 108 (121)
T smart00582 94 TKKKIRRLLNIWEER 108 (121)
T ss_pred HHHHHHHHHHHHhcC
Confidence 445555555555443
No 28
>PF05527 DUF758: Domain of unknown function (DUF758) ; InterPro: IPR008477 This is a family of eukaryotic proteins with unknown function, which are induced by tumour necrosis factor.; PDB: 3F4M_A.
Probab=25.17 E-value=2.6e+02 Score=23.39 Aligned_cols=48 Identities=15% Similarity=0.513 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHh--------------------hhch--hhhhccchhhhhhhhhHHHHHHHHHH
Q psy9197 73 NVFIVNLMRKCKQAIKLF--------------------KEGK--EKMYDESSHYRRNLTKLSLVFSHMLS 120 (154)
Q Consensus 73 ~i~i~nL~~K~kq~~~Lf--------------------K~~~--e~mf~E~S~~RR~LtKLsLiFSHMla 120 (154)
+.||..++.-|++.+.-. -+.. +.+|+.++.+|-.|.|+.=-...|+.
T Consensus 113 ~~~L~~~L~ec~~~L~~lv~~HLT~KS~~Ri~~vF~~f~~~efL~~lf~~~~~~~~~L~~i~~~Lnklld 182 (186)
T PF05527_consen 113 RNYLSKLLKECRDLLHQLVEPHLTPKSHGRIDHVFNFFSDPEFLDALFSPDEEYRDHLGKICDGLNKLLD 182 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTS-HHHHHHHHHHHHHHT-HHHHHHHTSG--GGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHHHhhCChHHHHHHhCcccchHHHHHHHHHHHHHHHh
Confidence 566677777777654322 2222 56666666677666666554444443
No 29
>PF13657 Couple_hipA: HipA N-terminal domain; PDB: 2WIU_C 3HZI_A 3DNT_B 3FBR_A 3DNU_A 3DNV_A.
Probab=24.07 E-value=33 Score=24.15 Aligned_cols=22 Identities=27% Similarity=0.629 Sum_probs=16.0
Q ss_pred CCCcccchhhHHHHHHHHHHhhhh
Q psy9197 37 SPPFLLDILPDTYQRLKLIYTKYE 60 (154)
Q Consensus 37 SPP~ildiLpdt~q~L~~I~~~~~ 60 (154)
-|||+.|+|||-. ++.++.+..
T Consensus 53 l~~ff~dllPeg~--~r~~l~~~~ 74 (99)
T PF13657_consen 53 LPPFFADLLPEGW--GRDLLARRL 74 (99)
T ss_dssp HHHHHHTTSBS-H--HHHHHHHHH
T ss_pred eHHHHhhcCCCHH--HHHHHHHHc
Confidence 4799999999998 666665543
No 30
>TIGR02284 conserved hypothetical protein. Members of this protein family are found mostly in the Proteobacteria, although one member is found in the the marine planctomycete Pirellula sp. strain 1. The function is unknown.
Probab=23.97 E-value=1.7e+02 Score=22.43 Aligned_cols=72 Identities=15% Similarity=0.272 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHhhhchhhhhccchhhhhhhhhHHHHHHHHHHHHhhhCC--CCeec-CCcceeecccHHHHHH---h
Q psy9197 76 IVNLMRKCKQAIKLFKEGKEKMYDESSHYRRNLTKLSLVFSHMLSELKAIFP--NGVFA-GDQFRITKSDAADFWR---N 149 (154)
Q Consensus 76 i~nL~~K~kq~~~LfK~~~e~mf~E~S~~RR~LtKLsLiFSHMlaELkAlFP--~G~f~-g~~friTK~~A~~FWr---~ 149 (154)
|.+|+..++-++.=|+.+-|++ +.+.++..+..++---.-...||.+.-- ||.-. +.++ +..+|..|- .
T Consensus 5 Ln~Lie~~~D~~~gY~~aae~v--~~~~lk~~f~~~~~~~~~~~~eL~~~v~~lGg~p~~~gs~---~g~lhr~w~~lks 79 (139)
T TIGR02284 5 LNDLIEISIDGKDGFEESAEEV--KDPELATLFRRIAGEKSAIVSELQQVVASLGGKPEDHGSM---VGSLHQFWGKIRA 79 (139)
T ss_pred HHHHHHHcccHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcH---HHHHHHHHHHHHH
Confidence 6788888888999998888876 5556666666665544444444443321 11111 1222 457888886 5
Q ss_pred hcC
Q psy9197 150 NFG 152 (154)
Q Consensus 150 ~FG 152 (154)
.||
T Consensus 80 ~~~ 82 (139)
T TIGR02284 80 TLT 82 (139)
T ss_pred HHc
Confidence 555
No 31
>TIGR03071 couple_hipA HipA N-terminal domain. Although Pfam models pfam07805 and pfam07804 currently are called HipA-like N-terminal domain and HipA-like C-terminal domain, respectively, those models hit the central and C-terminal regions of E. coli HipA but not the N-terminal region. This model hits the N-terminal region of HipA and its homologs, and also identifies proteins that lack match regions for pfam07804 and pfam07805.
Probab=23.95 E-value=26 Score=24.81 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=17.5
Q ss_pred CCCCcccchhhHHHHHHHHHHhhhh
Q psy9197 36 NSPPFLLDILPDTYQRLKLIYTKYE 60 (154)
Q Consensus 36 nSPP~ildiLpdt~q~L~~I~~~~~ 60 (154)
.-|||+.|+|||-+ ++.++.+..
T Consensus 54 ~l~~~f~~lLPEg~--~r~~~~~~~ 76 (101)
T TIGR03071 54 VVPPFFDGLLPEGP--ILSRLARRF 76 (101)
T ss_pred cHHHHHhhcCCCHH--HHHHHHHHc
Confidence 35799999999998 666665543
No 32
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=23.43 E-value=2.2e+02 Score=20.88 Aligned_cols=64 Identities=16% Similarity=0.292 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHHHHHHccCCCCCCCCCCCcccchhhHHHHHHHHHH--hhhhccccccCchhHHHHHHHHHHHHHHHHHH
Q psy9197 11 RTLDKTWKLMDKVVKLCQHPKMNLKNSPPFLLDILPDTYQRLKLIY--TKYEDKMIVLHNNEFFNVFIVNLMRKCKQAIK 88 (154)
Q Consensus 11 r~~~k~~klmdkvv~lC~~prLnLknSPP~ildiLpdt~q~L~~I~--~~~~~~~~~l~~~~yl~i~i~nL~~K~kq~~~ 88 (154)
|.+-||..+|+-|+. |+|| +++.++..+...|- ..+.. .++-+..-+. ++-.|+++++.
T Consensus 57 r~~~KaL~ll~yLl~----------nG~~---~~~~~~~~~~~~I~~l~~f~~-~d~~g~d~~~-----~VR~~A~~i~~ 117 (125)
T PF01417_consen 57 RHVYKALTLLEYLLK----------NGSE---RFVDELRDHIDIIRELQDFQY-VDPKGKDQGQ-----NVREKAKEILE 117 (125)
T ss_dssp HHHHHHHHHHHHHHH----------HS-H---HHHHHHHHTHHHHHGGGG----BBTTSTBHHH-----HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH----------HCCH---HHHHHHHHHHHHHhhcceeec-cCCCCccHHH-----HHHHHHHHHHH
Confidence 344555555555543 5666 44444444444333 33432 2332333333 37789999999
Q ss_pred Hhhhc
Q psy9197 89 LFKEG 93 (154)
Q Consensus 89 LfK~~ 93 (154)
|+.+.
T Consensus 118 lL~d~ 122 (125)
T PF01417_consen 118 LLNDD 122 (125)
T ss_dssp HHTSH
T ss_pred HhCCc
Confidence 98653
No 33
>PF13971 Mei4: Meiosis-specific protein Mei4
Probab=23.24 E-value=6e+02 Score=23.49 Aligned_cols=68 Identities=18% Similarity=0.268 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHccCCCCCCCCCCCcccchhhHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHh
Q psy9197 14 DKTWKLMDKVVKLCQHPKMNLKNSPPFLLDILPDTYQRLKLIYTKYEDKMIVLHNNEFFNVFIVNLMRKCKQAIKLF 90 (154)
Q Consensus 14 ~k~~klmdkvv~lC~~prLnLknSPP~ildiLpdt~q~L~~I~~~~~~~~~~l~~~~yl~i~i~nL~~K~kq~~~Lf 90 (154)
+-...++|-|+..|.+|+. +-|.-..+.+-....-|...+.... ..+-.+......++.=-|..+.+.
T Consensus 167 dSv~qlLd~l~~f~~~pk~---~~pl~~s~~~~~av~~la~~i~~~~------l~~~~~k~~~kkleEf~ktL~q~I 234 (375)
T PF13971_consen 167 DSVSQLLDGLIVFYRSPKV---LFPLPFSSFLTEAVKVLAQLIDDFN------LSNHILKECSKKLEEFEKTLLQLI 234 (375)
T ss_pred hHHHHHHHHHHHHhcCccc---cCCCCchHHHHHHHHHHHHHhhhhc------ccccchHHHHHHHHHHHHHHHHHH
Confidence 3456899999999999996 3344344444444444444444332 334444444444444444444433
No 34
>PF10983 DUF2793: Protein of unknown function (DUF2793); InterPro: IPR021251 This entry is represented by Bacteriophage D3112, Orf54. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=23.21 E-value=70 Score=23.45 Aligned_cols=26 Identities=19% Similarity=0.363 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHccCCCCCCCCCCCcc
Q psy9197 14 DKTWKLMDKVVKLCQHPKMNLKNSPPFL 41 (154)
Q Consensus 14 ~k~~klmdkvv~lC~~prLnLknSPP~i 41 (154)
+.+.++||-||.+|-.-+-. +.||--
T Consensus 2 NEAL~~LD~lvql~V~s~~~--t~PP~~ 27 (87)
T PF10983_consen 2 NEALRRLDALVQLAVLSRDL--TAPPAS 27 (87)
T ss_pred cHHHHHHHhhhhhheecccc--cCCCCC
Confidence 56889999999999887663 888854
No 35
>cd08674 Cdt1_m The middle winged helix fold of replication licensing factor Cdt1 binds geminin to inhibit binding of the MCM complex to origins of replication and DNA. Cdt1 is a replication licensing factor in eukaryotes that recruits the Minichromosome Maintenance Complex (MCM2-7) to the origin recognition complex (ORC). The Cdt1 protein is divided into three regions based on sequence comparison and biochemical analyses: the N-terminal region (Cdt1_n) binds DNA in a sequence-, strand-, and conformation-independent manner; the middle winged helix fold (Cdt1_m) binds geminin to inhibit both binding of the MCM complex to origins of replication and DNA; and the C-terminal region (Cdt1_c) is essential for Cdt1 activity and directly interacts with the MCM2-7 helicase. Precise duplication of chromosomal DNA is required for genomic stability during replication. Assembly of replication factors to start DNA replication in eukaryotes must occur only once per cell cycle. To form a pre-replicative
Probab=23.17 E-value=1.1e+02 Score=24.85 Aligned_cols=49 Identities=16% Similarity=0.286 Sum_probs=40.2
Q ss_pred hhhhHHHHHHHHHHHHHHHccCCCCCCCCCCCcccchhhH---------HHHHHHHHHhhhhc
Q psy9197 8 TDKRTLDKTWKLMDKVVKLCQHPKMNLKNSPPFLLDILPD---------TYQRLKLIYTKYED 61 (154)
Q Consensus 8 ~D~r~~~k~~klmdkvv~lC~~prLnLknSPP~ildiLpd---------t~q~L~~I~~~~~~ 61 (154)
-.=+.|.+..+.||.++.+|.+ ++.+|+...|.+- |..||.+|..-+.+
T Consensus 21 ~ky~~L~~~F~~ldtv~~~l~~-----R~~~~tf~~ik~~Ve~~~~r~f~~~~LaQI~~l~P~ 78 (185)
T cd08674 21 EKYEVLAELFRSLDTIVRLLFN-----RKETCTFDKLKPAVERMTRRRFSEKHLAQIKHIYPE 78 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-----cCCCCcHHHHHHHHHHHHCCCccHHHhhhhheeccC
Confidence 3447899999999999999988 4677999999988 67788888776654
No 36
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=22.77 E-value=65 Score=24.37 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=18.6
Q ss_pred hhhHHHHHHHHHHHHHHHccCC
Q psy9197 9 DKRTLDKTWKLMDKVVKLCQHP 30 (154)
Q Consensus 9 D~r~~~k~~klmdkvv~lC~~p 30 (154)
+....-+|+.+||-+|+.|+.|
T Consensus 50 n~~v~l~AL~lLe~~vkNcg~~ 71 (133)
T smart00288 50 NPHVALLALTLLDACVKNCGSK 71 (133)
T ss_pred CHHHHHHHHHHHHHHHHHCCHH
Confidence 4567788999999999999873
No 37
>PF02671 PAH: Paired amphipathic helix repeat; InterPro: IPR003822 This family contains the paired amphipathic helix (PAH) repeat. The family contains the eukaryotic Sin3 proteins, which have at least three PAH domains (PAH1, PAH2, and PAH3). Sin3 proteins are components of a co-repressor complex that silences transcription, playing important roles in the transition between proliferation and differentiation. Sin3 proteins are recruited to the DNA by various DNA-binding transcription factors such as the Mad family of repressors, Mnt/Rox, PLZF, MeCP2, p53, REST/NRSF, MNFbeta, Sp1, TGIF and Ume6 []. Sin3 acts as a scaffold protein that in turn recruits histone-binding proteins RbAp46/RbAp48 and histone deacetylases HDAC1/HDAC2, which deacetylate the core histones resulting in a repressed state of the chromatin []. The PAH domains are protein-protein interaction domains through which Sin3 fulfils its role as a scaffold. The PAH2 domain of Sin3 can interact with a wide range of unrelated and structurally diverse transcription factors that bind using different interaction motifs. For example, the Sin3 PAH2 domain can interact with the unrelated Mad and HBP1 factors using alternative interaction motifs that involve binding in opposite helical orientations [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1S5Q_B 2L9S_B 1G1E_B 1S5R_B 2CR7_A 2CZY_A 2LD7_B 2RMR_A 2RMS_A 1PD7_A ....
Probab=22.70 E-value=2e+02 Score=17.80 Aligned_cols=36 Identities=17% Similarity=0.384 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHhhhch
Q psy9197 46 PDTYQRLKLIYTKYEDKMIVLHNNEFFNVFIVNLMRKCKQAIKLFKEGK 94 (154)
Q Consensus 46 pdt~q~L~~I~~~~~~~~~~l~~~~yl~i~i~nL~~K~kq~~~LfK~~~ 94 (154)
|++|+....|+..|... ..+..+ =+.++..||++-.
T Consensus 1 p~~Y~~FL~il~~y~~~--~~~~~~-----------v~~~v~~Ll~~hp 36 (47)
T PF02671_consen 1 PEVYNEFLKILNDYKKG--RISRSE-----------VIEEVSELLRGHP 36 (47)
T ss_dssp HHHHHHHHHHHHHHHCT--CSCHHH-----------HHHHHHHHTTT-H
T ss_pred ChHHHHHHHHHHHHHhc--CCCHHH-----------HHHHHHHHHccCH
Confidence 78999999999998752 333333 3445667777554
No 38
>COG4755 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.40 E-value=3.7e+02 Score=21.96 Aligned_cols=60 Identities=25% Similarity=0.200 Sum_probs=35.4
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHhhhchhhhhccchhhhhhhhhH-HHHHHHHHHHHhhh
Q psy9197 66 LHNNEFFNVFIVNLMRKCKQAIKLFKEGKEKMYDESSHYRRNLTKL-SLVFSHMLSELKAI 125 (154)
Q Consensus 66 l~~~~yl~i~i~nL~~K~kq~~~LfK~~~e~mf~E~S~~RR~LtKL-sLiFSHMlaELkAl 125 (154)
+.--+|+.-|++||..=.|---+++|+-++-=-.+.+..|=.|-=- -+-|-||..-|||+
T Consensus 7 ~a~~~~~~sf~~~Le~WvklQk~~l~~lk~~~~~~k~~DRLdLi~~~r~af~hm~rtLKaF 67 (151)
T COG4755 7 EAVLEYLESFMERLEQWVKLQKRQLKELKSHGEHMKVADRLDLIYSARAAFGHMARTLKAF 67 (151)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445899999999988776666665544321112233344332211 13467999999986
No 39
>PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=22.18 E-value=1.8e+02 Score=27.85 Aligned_cols=97 Identities=24% Similarity=0.406 Sum_probs=54.2
Q ss_pred CCcccchhhHHHHHHHHH---HhhhhccccccCchhHHHHHHHHHHHHHHHHHHHhhhchhhh-----hccchhhhhhhh
Q psy9197 38 PPFLLDILPDTYQRLKLI---YTKYEDKMIVLHNNEFFNVFIVNLMRKCKQAIKLFKEGKEKM-----YDESSHYRRNLT 109 (154)
Q Consensus 38 PP~ildiLpdt~q~L~~I---~~~~~~~~~~l~~~~yl~i~i~nL~~K~kq~~~LfK~~~e~m-----f~E~S~~RR~Lt 109 (154)
|=-+.|-+|++..++.++ +...+.....+...+-...-..+|. .+...||+.-.+.+ -+..++-..+|.
T Consensus 309 sEGlie~ipe~~~li~el~~~~~~~~~~~~~~~~~~~~~~~~~~Ls---~~s~~l~~~lp~~i~~qLl~~rD~~Gn~~ls 385 (555)
T PRK07085 309 PEGLIEFIPEMKSLIKELNSLLAENESEFKGLDTEAQREYIISKLS---PESAKLFKSLPEDIARQLLLDRDPHGNVQVS 385 (555)
T ss_pred eCCchhcCchHHHHHHHHHHhhhhcccccccccchhhhhhhhhhcC---HHHHHHHhhcchhhhhhhccCcCCCCCeeec
Confidence 444668888888776665 3333222222222111221223332 33344554443222 245666778899
Q ss_pred hH--HHHHHHHHH-HHhhhCCCCeecCCccee
Q psy9197 110 KL--SLVFSHMLS-ELKAIFPNGVFAGDQFRI 138 (154)
Q Consensus 110 KL--sLiFSHMla-ELkAlFP~G~f~g~~fri 138 (154)
+. .-++++|+. ||+.....|+|.| .|..
T Consensus 386 ~i~te~lL~~lV~~~l~~~k~~g~y~~-~f~~ 416 (555)
T PRK07085 386 KIETEKLLIEMVKKELEKLKPEGKYKG-PFSA 416 (555)
T ss_pred cccHHHHHHHHHHHHHHHhhccccccc-ceee
Confidence 88 788999885 5777788888887 5543
No 40
>PF10428 SOG2: RAM signalling pathway protein; InterPro: IPR019487 The RAM signalling pathway regulates Ace2p transcription factor activity and cellular morphogenesis in Saccharomyces cerevisiae (Baker's yeast), and is thought to be conserved amongst eukaryotes []. This entry is found in one of the components of this pathway, the leucine-rich repeat-containing protein SOG2.
Probab=21.52 E-value=5.7e+02 Score=23.58 Aligned_cols=71 Identities=18% Similarity=0.217 Sum_probs=51.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHccCCCCCCCCCCCcccchhhHHHHHHHHHHhhhhccccccCc-hhHHHHHHHHHHHHHHH
Q psy9197 7 ATDKRTLDKTWKLMDKVVKLCQHPKMNLKNSPPFLLDILPDTYQRLKLIYTKYEDKMIVLHN-NEFFNVFIVNLMRKCKQ 85 (154)
Q Consensus 7 ~~D~r~~~k~~klmdkvv~lC~~prLnLknSPP~ildiLpdt~q~L~~I~~~~~~~~~~l~~-~~yl~i~i~nL~~K~kq 85 (154)
..+-+..++.+--|+...++|+. ++|..-+++...+..-.. .++ .+-+.-.+..|+.+|.+
T Consensus 295 ~~ed~idekl~~~L~~at~~a~~--------------vlp~l~~~~~~~~~~a~~----~~~~~~~~~~k~k~L~~~C~~ 356 (445)
T PF10428_consen 295 AEEDRIDEKLYLALQNATDLALH--------------VLPQLTSQFSKSARAAAQ----QRAIPPSLVQKWKELISKCNS 356 (445)
T ss_pred ccccHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHhc----cCCCCHHHHHHHHHHHHHHHH
Confidence 34455678888888888888865 677777777666665432 344 78888899999999999
Q ss_pred HHHHhhhchh
Q psy9197 86 AIKLFKEGKE 95 (154)
Q Consensus 86 ~~~LfK~~~e 95 (154)
++.+=|-=++
T Consensus 357 ~~~~T~~L~~ 366 (445)
T PF10428_consen 357 AIDQTERLKS 366 (445)
T ss_pred HHHHHHHHHH
Confidence 9887654433
No 41
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=21.36 E-value=1.3e+02 Score=23.91 Aligned_cols=56 Identities=18% Similarity=0.290 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHccCCCCCCCCCCCcccchhhHHHHHHHHHHhhhhccccccCchhHHH
Q psy9197 13 LDKTWKLMDKVVKLCQHPKMNLKNSPPFLLDILPDTYQRLKLIYTKYEDKMIVLHNNEFFN 73 (154)
Q Consensus 13 ~~k~~klmdkvv~lC~~prLnLknSPP~ildiLpdt~q~L~~I~~~~~~~~~~l~~~~yl~ 73 (154)
|.-+++++++=+++..+|.= .+-+...+-+|.+.|..+.+.++..++.+-++|...
T Consensus 135 Lp~~~~l~~kY~~l~~~~~~-----~~~~~~~l~e~~~~L~~l~~~f~~~~~~l~~~d~~d 190 (199)
T PF10112_consen 135 LPTAVKLLEKYAELESQPVK-----SEEIKQSLEEIEETLDTLNQAFEKDLDKLLEDDIMD 190 (199)
T ss_pred hhHHHHHHHHHHHHHhccCC-----ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 45566666666666666533 244556666666666666666665555554444443
No 42
>TIGR02677 conserved hypothetical protein TIGR02677. Members of this protein belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria).
Probab=21.14 E-value=3.3e+02 Score=25.61 Aligned_cols=84 Identities=18% Similarity=0.245 Sum_probs=62.2
Q ss_pred chhhhhHHHHHHHHHHHHHHHccCCCCCCCCCCCcccchhhHHHHHHHHHHhhhhccccccC------------------
Q psy9197 6 LATDKRTLDKTWKLMDKVVKLCQHPKMNLKNSPPFLLDILPDTYQRLKLIYTKYEDKMIVLH------------------ 67 (154)
Q Consensus 6 ~~~D~r~~~k~~klmdkvv~lC~~prLnLknSPP~ildiLpdt~q~L~~I~~~~~~~~~~l~------------------ 67 (154)
.++++-.|++....|.++..+-..|.. .+.=+-.++-+.+.++..+..++.+-+..|+
T Consensus 112 g~L~~~~L~ri~~~L~~l~~l~~~~~~----~~~~v~~~~~~L~~~f~~L~~na~df~~~L~~~~~~~~~~~e~Fl~yKd 187 (494)
T TIGR02677 112 GALQTAALDDIVQRLRELLALIDQPRP----DAREVHRTLRELYGSFESLADNAQAFMADLQRHRPLEVADYEAFLAYKD 187 (494)
T ss_pred cccChhHHHHHHHHHHHHHHHHhCCCc----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhhcChhHHHHHHH
Confidence 356788899999999999999888754 2335667777777777777777765332221
Q ss_pred -chhHHHHHHHHHHHHHHHHHHHhhhc
Q psy9197 68 -NNEFFNVFIVNLMRKCKQAIKLFKEG 93 (154)
Q Consensus 68 -~~~yl~i~i~nL~~K~kq~~~LfK~~ 93 (154)
=.+||+=|+..|...+-++...++.-
T Consensus 188 ~Li~YL~~Fv~~L~~~~~~I~~~l~~l 214 (494)
T TIGR02677 188 RLIAYLQDFIVRLVDRSEQIAQLLRVL 214 (494)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 15789999999999999998888543
No 43
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=20.66 E-value=58 Score=26.87 Aligned_cols=14 Identities=29% Similarity=0.565 Sum_probs=10.3
Q ss_pred HHHHHHHHHHhhhh
Q psy9197 47 DTYQRLKLIYTKYE 60 (154)
Q Consensus 47 dt~q~L~~I~~~~~ 60 (154)
+||.|||+++..++
T Consensus 41 RTydHLRe~~p~R~ 54 (160)
T PF12692_consen 41 RTYDHLREIFPDRR 54 (160)
T ss_dssp HHHHHHHHH--SS-
T ss_pred ccHHHHHHhCCCCe
Confidence 89999999998876
No 44
>PF06511 IpaD: Invasion plasmid antigen IpaD; InterPro: IPR009483 This family consists of several invasion plasmid antigen IpaD proteins. Entry of Shigella flexneri into epithelial cells and lysis of the phagosome involve the IpaB, IpaC, and IpaD proteins, which are secreted by type III secretion machinery, and appear to form a multi-protein complex capable of inducing the phagocytic event which internalizes the bacterium [].; GO: 0009405 pathogenesis; PDB: 3R9V_B 2JAA_B 2J0O_A 2J0N_B 2P7N_A 2YM9_A 3NZZ_A 3O02_A 3O00_A 2YM0_B ....
Probab=20.37 E-value=3.7e+02 Score=24.48 Aligned_cols=52 Identities=10% Similarity=0.263 Sum_probs=31.9
Q ss_pred cchhhhhhhhhHHHHHHHHHHHHhhhCCCCee-----cCCcceeecccHHHHHHhhcC
Q psy9197 100 ESSHYRRNLTKLSLVFSHMLSELKAIFPNGVF-----AGDQFRITKSDAADFWRNNFG 152 (154)
Q Consensus 100 E~S~~RR~LtKLsLiFSHMlaELkAlFP~G~f-----~g~~friTK~~A~~FWr~~FG 152 (154)
+|....-+..+|-=-+.++..+....+|++.. .++.+.++-.||+ ||.+--|
T Consensus 182 DGn~VkfD~~~lk~al~~l~~kY~~~n~~~vlfP~~~d~~i~~~~~~EA~-~W~~eLg 238 (337)
T PF06511_consen 182 DGNNVKFDAGALKNALEELKDKYSSDNEDSVLFPAQTDAGIITVSQEEAE-KWLKELG 238 (337)
T ss_dssp SCTEEEEEHHHHHHHHHHHHHHHTS-STTTEEESSSSSSSEE-BTHHHHH-HHHHHHT
T ss_pred CCCeeeecHHHHHHHHHHHHHHhcccCCcceecCCCCcccccCCCHHHHH-HHHHHhC
Confidence 44555566666666778888888855555544 3334567777775 7776544
Done!