Query psy9197
Match_columns 154
No_of_seqs 56 out of 58
Neff 3.5
Searched_HMMs 29240
Date Fri Aug 16 21:22:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9197.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9197hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bux_B E3 ubiquitin-protein li 100.0 7.8E-77 2.7E-81 513.2 12.4 153 2-154 23-175 (329)
2 3op0_A Signal transduction pro 100.0 2.6E-73 8.8E-78 490.0 14.3 148 5-154 3-160 (323)
3 2y1n_A E3 ubiquitin-protein li 100.0 9.6E-72 3.3E-76 488.7 12.2 151 4-154 1-151 (389)
4 2ve7_C Kinetochore protein NUF 69.5 15 0.00051 29.9 7.1 90 6-112 83-175 (250)
5 3oak_C Transcription elongatio 59.9 4.2 0.00014 24.4 1.5 16 115-130 3-21 (31)
6 1g1e_B SIN3A; four-helix bundl 52.7 55 0.0019 22.7 9.0 37 10-61 7-43 (89)
7 4fjo_A DNA repair protein REV1 50.4 15 0.00051 25.9 3.4 53 45-122 11-63 (97)
8 2czy_A Paired amphipathic heli 47.2 62 0.0021 21.7 8.4 68 12-129 3-70 (77)
9 3vu7_H DNA repair protein REV1 39.0 28 0.00095 25.9 3.5 35 44-80 37-71 (124)
10 4ehp_B Catenin alpha-1; adhere 36.3 58 0.002 24.2 4.9 47 21-85 60-106 (111)
11 2cr7_A Paired amphipathic heli 35.2 1E+02 0.0035 20.8 5.8 69 12-130 9-77 (80)
12 4f3h_A Fimxeal, putative uncha 31.6 60 0.0021 24.6 4.5 53 7-61 72-124 (250)
13 1ygp_A Yeast glycogen phosphor 28.8 32 0.0011 33.4 2.9 49 104-152 466-538 (879)
14 4etr_A Putative uncharacterize 28.4 1.2E+02 0.004 22.1 5.4 50 74-125 14-63 (153)
15 1tmx_A Hydroxyquinol 1,2-dioxy 21.6 86 0.0029 26.4 4.0 67 37-124 28-96 (293)
16 1szi_A TIP47, mannose-6-phosph 21.6 65 0.0022 26.7 3.1 57 5-61 133-189 (247)
17 2ozb_B U4/U6 small nuclear rib 21.4 2.4E+02 0.0083 23.1 6.6 62 22-91 64-126 (260)
18 4ev6_A Magnesium transport pro 21.1 86 0.0029 25.5 3.8 23 20-42 134-158 (339)
19 3ro8_A Endo-1,4-beta-xylanase; 20.9 95 0.0033 26.1 4.1 69 18-86 62-178 (341)
No 1
>3bux_B E3 ubiquitin-protein ligase CBL; TKB, signal transduction, proto-oncogene, complex, ATP-binding, glycoprotein, kinase, membrane, nucleotide-binding; HET: PTR; 1.35A {Homo sapiens} SCOP: a.39.1.7 a.48.1.1 d.93.1.1 PDB: 1yvh_A* 3bun_B* 3buo_B* 3bum_B* 3buw_B* 3ob1_B* 3ob2_B* 3plf_B* 2cbl_A* 1b47_A 3pfv_A*
Probab=100.00 E-value=7.8e-77 Score=513.17 Aligned_cols=153 Identities=64% Similarity=1.115 Sum_probs=149.5
Q ss_pred CCCCchhhhhHHHHHHHHHHHHHHHccCCCCCCCCCCCcccchhhHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHH
Q psy9197 2 APPKLATDKRTLDKTWKLMDKVVKLCQHPKMNLKNSPPFLLDILPDTYQRLKLIYTKYEDKMIVLHNNEFFNVFIVNLMR 81 (154)
Q Consensus 2 ~~~~~~~D~r~~~k~~klmdkvv~lC~~prLnLknSPP~ildiLpdt~q~L~~I~~~~~~~~~~l~~~~yl~i~i~nL~~ 81 (154)
++|+.++|||+|+|+||+|||||++||+||||||||||||+||||||||||+.|+++|++.+++|++||||+|||.||++
T Consensus 23 ~~~~~~~D~r~l~k~~k~mdkv~klCq~prlnLkNSPP~i~diLpdTy~~L~~i~~~~~~~~~~L~~~ey~~i~i~nL~~ 102 (329)
T 3bux_B 23 PHPPGTVDKKMVEKCWKLMDKVVRLCQNPKLALKNSPPYILDLLPDTYQHLRTILSRYEGKMETLGENEYFRVFMENLMK 102 (329)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHHHHHTCGGGCCCSCSSCHHHHHHHHHHHHHHHHHHTSSCHHHHHHCHHHHHHHHHHHH
T ss_pred CCCCccccHHHHHHHHHHHHHHHHHhcCCcccCCCCCccHHHHhHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhchhhhhccchhhhhhhhhHHHHHHHHHHHHhhhCCCCeecCCcceeecccHHHHHHhhcCCC
Q psy9197 82 KCKQAIKLFKEGKEKMYDESSHYRRNLTKLSLVFSHMLSELKAIFPNGVFAGDQFRITKSDAADFWRNNFGNA 154 (154)
Q Consensus 82 K~kq~~~LfK~~~e~mf~E~S~~RR~LtKLsLiFSHMlaELkAlFP~G~f~g~~friTK~~A~~FWr~~FG~~ 154 (154)
|||||++|||+|+|+||+|+|++|||||||||||||||+||+|+||+|+||||+|||||++|++||+++||+.
T Consensus 103 Kckq~~~Lfk~~ke~mf~e~S~~RR~L~KLsLIfSHmL~eL~AlFP~G~f~g~~frItK~~A~eFW~~~FG~r 175 (329)
T 3bux_B 103 KTKQTISLFKEGKERMYEENSQPRRNLTKLSLIFSHMLAELKGIFPSGLFQGDTFRITKADAAEFWRKAFGEK 175 (329)
T ss_dssp HHHHHHHHHHHHGGGGGSTTCHHHHHHHHHHHHHHHHHHHHHHHSGGGSCCGGGCCCSSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhhhHhhhhhcchhhhhHHHHHHHHHHHHHHHHhhCCCCeecCCceeecChHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999974
No 2
>3op0_A Signal transduction protein CBL-C; structural genomics, structural genomics consortium, SGC, SI transduction protein, SH3-binding protein; HET: PTR; 2.52A {Homo sapiens}
Probab=100.00 E-value=2.6e-73 Score=489.96 Aligned_cols=148 Identities=30% Similarity=0.609 Sum_probs=142.6
Q ss_pred CchhhhhHHHHHHHHHHHHHHHccCCCCCCCCCCCcccchhhHHHHHHHHHHhhhhcc-----ccccCchhHHHHHHHHH
Q psy9197 5 KLATDKRTLDKTWKLMDKVVKLCQHPKMNLKNSPPFLLDILPDTYQRLKLIYTKYEDK-----MIVLHNNEFFNVFIVNL 79 (154)
Q Consensus 5 ~~~~D~r~~~k~~klmdkvv~lC~~prLnLknSPP~ildiLpdt~q~L~~I~~~~~~~-----~~~l~~~~yl~i~i~nL 79 (154)
..+.|+||++|+||+|||||++||||||+ ||||||+||||||||||++|+++|++. +++|++||||+|||+||
T Consensus 3 ~~~~~~r~~~~~~kll~~l~~lC~~prL~--nSPP~l~diLpdt~q~L~~I~~~~~~~~~~~~~~~~~~~~yl~i~l~nl 80 (323)
T 3op0_A 3 RQWEEARALGRAVRMLQRLEEQCVDPRLS--VSPPSLRDLLPRTAQLLREVAHSRREAGGGGPGGPGGSGDFLLIYLANL 80 (323)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHCCCTTCC--CSSSCHHHHHHHHHHHHHHHHHHHHTCSCSSCCSTTSHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHhCCCCcC--CCCccHHHHhHHHHHHHHHHHhhhhhccccCCCCCCccccHHHHHHHHH
Confidence 35789999999999999999999999996 999999999999999999999999985 48999999999999999
Q ss_pred HHHHHHHHHHh-----hhchhhhhccchhhhhhhhhHHHHHHHHHHHHhhhCCCCeecCCcceeecccHHHHHHhhcCCC
Q psy9197 80 MRKCKQAIKLF-----KEGKEKMYDESSHYRRNLTKLSLVFSHMLSELKAIFPNGVFAGDQFRITKSDAADFWRNNFGNA 154 (154)
Q Consensus 80 ~~K~kq~~~Lf-----K~~~e~mf~E~S~~RR~LtKLsLiFSHMlaELkAlFP~G~f~g~~friTK~~A~~FWr~~FG~~ 154 (154)
++|||||++|| |+|+|+||+|+|++|||||||||||||||+||+|+||+|+||||+|||||++|++||+++||+.
T Consensus 81 ~~K~kq~~~Lf~~~~~k~~~e~~f~e~S~~RR~L~KlsLiFSHMlaEL~AlFP~G~f~g~~y~itk~~A~~FWk~~FG~r 160 (323)
T 3op0_A 81 EAKSRQVAALLPPRGRRSANDELFRAGSRLRRQLAKLAIIFSHMHAELHALFPGGKYCGHMYQLTKAPAHTFWRESCGAR 160 (323)
T ss_dssp HHHHHHHHHHSCSSSCSSCCGGGGSTTBHHHHHHHHHHHHHHHHHHHHHHHSGGGCCCTTTCCCSSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCcccccchhhhhhccccHHHHHHHHHHHHHHHHHHHHHhhCCCCEecCCceEEcChHHHHHHHHhcCCC
Confidence 99999999999 5899999999999999999999999999999999999999999999999999999999999973
No 3
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=100.00 E-value=9.6e-72 Score=488.70 Aligned_cols=151 Identities=65% Similarity=1.131 Sum_probs=144.7
Q ss_pred CCchhhhhHHHHHHHHHHHHHHHccCCCCCCCCCCCcccchhhHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHH
Q psy9197 4 PKLATDKRTLDKTWKLMDKVVKLCQHPKMNLKNSPPFLLDILPDTYQRLKLIYTKYEDKMIVLHNNEFFNVFIVNLMRKC 83 (154)
Q Consensus 4 ~~~~~D~r~~~k~~klmdkvv~lC~~prLnLknSPP~ildiLpdt~q~L~~I~~~~~~~~~~l~~~~yl~i~i~nL~~K~ 83 (154)
|+.++|||+|+|++|+|||||++|||||||||||||||+||||||||||+.|+++|++.+++|++||||+|||.||++||
T Consensus 1 ~~~~~d~~~~~~~~~~~~~~~~~c~~~~~~l~nspp~~~~~l~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 80 (389)
T 2y1n_A 1 PPGTVDKKMVEKCWKLMDKVVRLCQNPKLALKNSPPYILDLLPDTYQHLRTILSRYEGKMETLGENEYFRVFMENLMKKT 80 (389)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHTCTTTCCCSCSSCHHHHHHHHHHHHHHHHHHSTTCHHHHHHCHHHHHHHHHHHHHH
T ss_pred CCCcccHHHHHHHHHHHHHHHHHhcCCccccCCCCccHHHHhHHHHHHHHHHHHhhhhhhcccccccHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhchhhhhccchhhhhhhhhHHHHHHHHHHHHhhhCCCCeecCCcceeecccHHHHHHhhcCCC
Q psy9197 84 KQAIKLFKEGKEKMYDESSHYRRNLTKLSLVFSHMLSELKAIFPNGVFAGDQFRITKSDAADFWRNNFGNA 154 (154)
Q Consensus 84 kq~~~LfK~~~e~mf~E~S~~RR~LtKLsLiFSHMlaELkAlFP~G~f~g~~friTK~~A~~FWr~~FG~~ 154 (154)
|||++|||+|+|+||+|+|++|||||||||||||||+||+|+||+|+|+||+|||||++|++||+++||+.
T Consensus 81 ~~~~~l~k~~~~~~~~e~s~~rr~l~klslifshml~el~a~fp~g~~~~~~~~i~k~~A~~fW~~~fg~~ 151 (389)
T 2y1n_A 81 KQTISLFKEGKERMYEENSQPRRNLTKLSLIFSHMLAELKGIFPSGLFQGDTFRITKADAAEFWRKAFGEK 151 (389)
T ss_dssp HHHHHHHHHHGGGGGSTTCHHHHHHHHHHHHHHHHHHHHHHHSGGGCCCGGGCCCSSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhCCCCcccCCceEecChHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999974
No 4
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=69.50 E-value=15 Score=29.95 Aligned_cols=90 Identities=13% Similarity=0.184 Sum_probs=58.2
Q ss_pred chhhhhHHHHHHHHHHHHHHHccCCCCCCCCCCCcccchhhHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHH
Q psy9197 6 LATDKRTLDKTWKLMDKVVKLCQHPKMNLKNSPPFLLDILPDTYQRLKLIYTKYEDKMIVLHNNEFFNVFIVNLMRKCKQ 85 (154)
Q Consensus 6 ~~~D~r~~~k~~klmdkvv~lC~~prLnLknSPP~ildiLpdt~q~L~~I~~~~~~~~~~l~~~~yl~i~i~nL~~K~kq 85 (154)
.-.+...+-..++.|.++++.|+=+-.+ +.||+--+..+++.+++.-= .|++ |=+.-+..+.+
T Consensus 83 l~~~si~~l~~~r~l~~~l~~~gv~DFt-------l~DL~kP~~~Rt~~iLSalI---------NF~~-FRE~~~~~~~e 145 (250)
T 2ve7_C 83 LMEGFLPFSNLVTHLDSFLPICRVNDFE-------TADILCPKAKRTSRFLSGII---------NFIH-FREACRETYME 145 (250)
T ss_dssp GGTTTHHHHHHHHHHHHHHHHTTCCCCC-------HHHHHSCCHHHHHHHHHHHH---------HHHH-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHcCCCCCc-------HhHhcCCchHHHHHHHHHHH---------HHHH-HHHHHHHHHHH
Confidence 4457777788999999999999988775 78999888999999987542 2333 33333333444
Q ss_pred HHHHhh---hchhhhhccchhhhhhhhhHH
Q psy9197 86 AIKLFK---EGKEKMYDESSHYRRNLTKLS 112 (154)
Q Consensus 86 ~~~LfK---~~~e~mf~E~S~~RR~LtKLs 112 (154)
.+.-.+ +.-+.++.|.+...++|.+|-
T Consensus 146 ~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk 175 (250)
T 2ve7_C 146 FLWQYKSSADKMQQLNAAHQEALMKLERLE 175 (250)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHSCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433332 222455666777777777654
No 5
>3oak_C Transcription elongation factor SPT6; transcription factor complex, nucleus; 2.15A {Saccharomyces cerevisiae}
Probab=59.90 E-value=4.2 Score=24.42 Aligned_cols=16 Identities=44% Similarity=0.881 Sum_probs=13.4
Q ss_pred HHHH---HHHHhhhCCCCe
Q psy9197 115 FSHM---LSELKAIFPNGV 130 (154)
Q Consensus 115 FSHM---laELkAlFP~G~ 130 (154)
|+|| +.|+.++|=+|.
T Consensus 3 ~~~~~~aledm~eiFGdG~ 21 (31)
T 3oak_C 3 FTHMSDKIDEMYDIFGDGH 21 (31)
T ss_dssp HHHHHHHHHHHHHHHCCSC
T ss_pred chhHHHHHHHHHHHhCCCc
Confidence 7888 778899998874
No 6
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=52.69 E-value=55 Score=22.70 Aligned_cols=37 Identities=19% Similarity=0.372 Sum_probs=32.0
Q ss_pred hhHHHHHHHHHHHHHHHccCCCCCCCCCCCcccchhhHHHHHHHHHHhhhhc
Q psy9197 10 KRTLDKTWKLMDKVVKLCQHPKMNLKNSPPFLLDILPDTYQRLKLIYTKYED 61 (154)
Q Consensus 10 ~r~~~k~~klmdkvv~lC~~prLnLknSPP~ildiLpdt~q~L~~I~~~~~~ 61 (154)
+-+++.|...+++|-.-+++ + |++|..+..|+..|+.
T Consensus 7 ~~~~~~A~~YvnkVK~rF~~---~------------p~~Y~~FL~IL~~y~~ 43 (89)
T 1g1e_B 7 PVEFNHAINYVNKIKNRFQG---Q------------PDIYKAFLEILHTYQK 43 (89)
T ss_dssp THHHHHHHHHHHHHHHHTTT---C------------HHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcc---C------------hHHHHHHHHHHHHHHh
Confidence 34788999999999998887 2 8999999999999964
No 7
>4fjo_A DNA repair protein REV1; translesion synthesis, transferase -DNA binding protein COMP transferase-DNA binding protein complex; HET: DNA; 2.72A {Mus musculus} PDB: 2lsg_A* 2lsk_A* 2lsy_A*
Probab=50.36 E-value=15 Score=25.91 Aligned_cols=53 Identities=23% Similarity=0.235 Sum_probs=35.5
Q ss_pred hhHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHhhhchhhhhccchhhhhhhhhHHHHHHHHHHHH
Q psy9197 45 LPDTYQRLKLIYTKYEDKMIVLHNNEFFNVFIVNLMRKCKQAIKLFKEGKEKMYDESSHYRRNLTKLSLVFSHMLSEL 122 (154)
Q Consensus 45 Lpdt~q~L~~I~~~~~~~~~~l~~~~yl~i~i~nL~~K~kq~~~LfK~~~e~mf~E~S~~RR~LtKLsLiFSHMlaEL 122 (154)
|||.-..|..=++..++ .--.+.++|.=|+..|... |+|-|+..|.-+|..=+
T Consensus 11 l~dvr~~l~~Wv~~~~~--P~~~DV~~l~~yL~~lv~~-----------------------~~lek~~~vlk~l~rlv 63 (97)
T 4fjo_A 11 FSDVKTLLKEWITTISD--PMEEDILQVVRYCTDLIEE-----------------------KDLEKLDLVIKYMKRLM 63 (97)
T ss_dssp HHHHHHHHHHHHHHCSS--CCHHHHHHHHHHHHHHHHT-----------------------TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHHhhc-----------------------cCHHHHHHHHHHHHHHH
Confidence 68888888888876543 3445778888888776531 46677777766664444
No 8
>2czy_A Paired amphipathic helix protein SIN3B; SIN3, PAH1, transcriptional repressor, gene regulation; NMR {Mus musculus}
Probab=47.19 E-value=62 Score=21.73 Aligned_cols=68 Identities=18% Similarity=0.378 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHccCCCCCCCCCCCcccchhhHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHhh
Q psy9197 12 TLDKTWKLMDKVVKLCQHPKMNLKNSPPFLLDILPDTYQRLKLIYTKYEDKMIVLHNNEFFNVFIVNLMRKCKQAIKLFK 91 (154)
Q Consensus 12 ~~~k~~klmdkvv~lC~~prLnLknSPP~ildiLpdt~q~L~~I~~~~~~~~~~l~~~~yl~i~i~nL~~K~kq~~~LfK 91 (154)
+++.|...|++|-..+++ . |+.|..+..|+..|... .. + ...=..++..||+
T Consensus 3 ~~~dA~~yl~~VK~~F~~---~------------p~~Y~~FL~im~~~k~~--~~---~--------~~~v~~rv~~Lf~ 54 (77)
T 2czy_A 3 HVEDALTYLDQVKIRFGS---D------------PATYNGFLEIMKEFKSQ--SI---D--------TPGVIRRVSQLFH 54 (77)
T ss_dssp SHHHHHHHHHHHHHHTTT---C------------HHHHHHHHHHHHHHHTT--CS---C--------HHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHcc---C------------hHHHHHHHHHHHHHHHc--CC---C--------HHHHHHHHHHHHc
Confidence 578899999999998887 2 89999999999999752 11 1 1233467889999
Q ss_pred hchhhhhccchhhhhhhhhHHHHHHHHHHHHhhhCCCC
Q psy9197 92 EGKEKMYDESSHYRRNLTKLSLVFSHMLSELKAIFPNG 129 (154)
Q Consensus 92 ~~~e~mf~E~S~~RR~LtKLsLiFSHMlaELkAlFP~G 129 (154)
+-. +.+.|+.++.|.|
T Consensus 55 ~hp----------------------dLi~gFn~FLP~~ 70 (77)
T 2czy_A 55 EHP----------------------DLIVGFNAFLPLG 70 (77)
T ss_dssp TCH----------------------HHHHHHHTTSCSS
T ss_pred CCH----------------------HHHHHHHHHCCCC
Confidence 754 4677888888876
No 9
>3vu7_H DNA repair protein REV1; DNA replication, translesion DNA synthesis, damage tolerance, DNA repair, replication; HET: DNA; 2.80A {Homo sapiens} PDB: 2lsj_A*
Probab=38.97 E-value=28 Score=25.90 Aligned_cols=35 Identities=14% Similarity=0.064 Sum_probs=26.0
Q ss_pred hhhHHHHHHHHHHhhhhccccccCchhHHHHHHHHHH
Q psy9197 44 ILPDTYQRLKLIYTKYEDKMIVLHNNEFFNVFIVNLM 80 (154)
Q Consensus 44 iLpdt~q~L~~I~~~~~~~~~~l~~~~yl~i~i~nL~ 80 (154)
-|||.-..|..-++..++ .--.+.++|.=|+..|+
T Consensus 37 ~l~evK~lL~~Wv~s~~~--P~~~DV~~l~~yL~~lV 71 (124)
T 3vu7_H 37 EFNDVKTLLREWITTISD--PMEEDILQVVKYCTDLI 71 (124)
T ss_dssp SHHHHHHHHHHHHHHHCS--CCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHHh
Confidence 469999999998887654 23457778888887775
No 10
>4ehp_B Catenin alpha-1; adherens junctions, vinculin binding site, vinculin binding helix bundle, cell adhesion; 2.66A {Homo sapiens}
Probab=36.31 E-value=58 Score=24.16 Aligned_cols=47 Identities=17% Similarity=0.302 Sum_probs=34.3
Q ss_pred HHHHHHccCCCCCCCCCCCcccchhhHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHH
Q psy9197 21 DKVVKLCQHPKMNLKNSPPFLLDILPDTYQRLKLIYTKYEDKMIVLHNNEFFNVFIVNLMRKCKQ 85 (154)
Q Consensus 21 dkvv~lC~~prLnLknSPP~ildiLpdt~q~L~~I~~~~~~~~~~l~~~~yl~i~i~nL~~K~kq 85 (154)
++||.+|+. ..|-|+..++.|..+.+.-...|=|...|.++..|++.
T Consensus 60 erIv~eCna------------------vRqaLQdLlseym~~~g~ke~se~L~~aI~km~~kt~d 106 (111)
T 4ehp_B 60 ERIVAECNA------------------VRQALQDLLSEYMGNAGRKERSDALNSAIDKMTKKTRD 106 (111)
T ss_dssp HHHHHHHHH------------------HHHHHHHHHHHHHGGGCCCCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH------------------HHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHH
Confidence 567778876 45677778888877655555667888888888877764
No 11
>2cr7_A Paired amphipathic helix protein SIN3B; paired amphipathic helix repeat, transcriptional repressor, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rmr_A 2rms_A
Probab=35.16 E-value=1e+02 Score=20.80 Aligned_cols=69 Identities=17% Similarity=0.353 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHccCCCCCCCCCCCcccchhhHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHhh
Q psy9197 12 TLDKTWKLMDKVVKLCQHPKMNLKNSPPFLLDILPDTYQRLKLIYTKYEDKMIVLHNNEFFNVFIVNLMRKCKQAIKLFK 91 (154)
Q Consensus 12 ~~~k~~klmdkvv~lC~~prLnLknSPP~ildiLpdt~q~L~~I~~~~~~~~~~l~~~~yl~i~i~nL~~K~kq~~~LfK 91 (154)
+++.|...+++|-..++| . |++|..+..|+..|... . . +.-.=..++..||+
T Consensus 9 ~~~dA~~yl~~VK~rF~~---~------------p~~Y~~FL~im~~fk~~--~---~--------~~~~v~~rV~~Lf~ 60 (80)
T 2cr7_A 9 HVEDALTYLDQVKIRFGS---D------------PATYNGFLEIMKEFKSQ--S---I--------DTPGVIRRVSQLFH 60 (80)
T ss_dssp CSCCSHHHHHHHHHHTSS---C------------HHHHHHHHHHHHHHHTT--S---S--------CHHHHHHHHHHHGG
T ss_pred CHHHHHHHHHHHHHHHcc---C------------hHHHHHHHHHHHHHHhc--C---C--------CHHHHHHHHHHHHc
Confidence 344677888888888876 2 89999999999999752 1 1 12233468899999
Q ss_pred hchhhhhccchhhhhhhhhHHHHHHHHHHHHhhhCCCCe
Q psy9197 92 EGKEKMYDESSHYRRNLTKLSLVFSHMLSELKAIFPNGV 130 (154)
Q Consensus 92 ~~~e~mf~E~S~~RR~LtKLsLiFSHMlaELkAlFP~G~ 130 (154)
+-. +.+.|+.++.|.|.
T Consensus 61 ~hp----------------------dLi~gFn~FLP~~~ 77 (80)
T 2cr7_A 61 EHP----------------------DLIVGFNAFLPSGP 77 (80)
T ss_dssp GCH----------------------HHHHHHHHHSSCSS
T ss_pred CCH----------------------HHHHHHHHHCcCCC
Confidence 764 45677888888764
No 12
>4f3h_A Fimxeal, putative uncharacterized protein; fimxeal-C-DI-GMP, type IV pilus, signaling protein; HET: C2E; 2.50A {Xanthomonas campestris PV} PDB: 4f48_A*
Probab=31.62 E-value=60 Score=24.59 Aligned_cols=53 Identities=9% Similarity=0.216 Sum_probs=43.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHccCCCCCCCCCCCcccchhhHHHHHHHHHHhhhhc
Q psy9197 7 ATDKRTLDKTWKLMDKVVKLCQHPKMNLKNSPPFLLDILPDTYQRLKLIYTKYED 61 (154)
Q Consensus 7 ~~D~r~~~k~~klmdkvv~lC~~prLnLknSPP~ildiLpdt~q~L~~I~~~~~~ 61 (154)
.+|+..++++.+.+........+.++.+.-||..|.| |+..+.|..++..+.-
T Consensus 72 ~l~~~vl~~a~~~~~~~~~~~~~~~l~iNls~~~l~~--~~~~~~l~~~l~~~~~ 124 (250)
T 4f3h_A 72 EIDRWVVARAIRQLGERQRAGHKTHLLVRIGPNSFSD--PQMIDTIREQLAVYGV 124 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGSSC--HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCceEEEEeCHHHhCC--cHHHHHHHHHHHHcCC
Confidence 5788889999998888777666778888899999887 7888889999888753
No 13
>1ygp_A Yeast glycogen phosphorylase; phosphorylated form, glycosyltransferase; HET: PLP; 2.80A {Saccharomyces cerevisiae} SCOP: c.87.1.4
Probab=28.76 E-value=32 Score=33.41 Aligned_cols=49 Identities=16% Similarity=0.232 Sum_probs=32.0
Q ss_pred hhhhhhhHHHHHHH----------------HHHHHhhhCCCCeecCCcceeec--------ccHHHHHHhhcC
Q psy9197 104 YRRNLTKLSLVFSH----------------MLSELKAIFPNGVFAGDQFRITK--------SDAADFWRNNFG 152 (154)
Q Consensus 104 ~RR~LtKLsLiFSH----------------MlaELkAlFP~G~f~g~~friTK--------~~A~~FWr~~FG 152 (154)
-+-+.+-|+++.|| |+.++..+||+.+|..-|-=||- .+-++.|.+..|
T Consensus 466 ~~v~MA~LAi~~S~~vNGVs~LH~ev~k~~~f~df~~l~P~~kf~n~TNGVt~rrWl~~~Np~L~~Li~~~iG 538 (879)
T 1ygp_A 466 RQIRMAFLAIVGSHKVNGVVELHSELIKTTIFKDFIKFYGPSKFVNVTNGITPRRWLKQANPSLAKLISETLN 538 (879)
T ss_dssp CEEEHHHHHHHHEEEEEESSHHHHHHHHHTTTHHHHHHHCGGGEEECCCCBCHHHHTTTTCHHHHHHHHHHTT
T ss_pred ceeehHHHHHHhcCceeEehHHHHHHHHHHHhHHHHHhCCCCcccCcCCCcCCchhhhhcCHHHHHHHHHhcC
Confidence 35678999999865 55667788887677766655543 344455555555
No 14
>4etr_A Putative uncharacterized protein; DUF2383, domain of unknown function, cytoplasmic, unknown FU; 2.25A {Pseudomonas aeruginosa}
Probab=28.38 E-value=1.2e+02 Score=22.12 Aligned_cols=50 Identities=16% Similarity=0.205 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHhhhchhhhhccchhhhhhhhhHHHHHHHHHHHHhhh
Q psy9197 74 VFIVNLMRKCKQAIKLFKEGKEKMYDESSHYRRNLTKLSLVFSHMLSELKAI 125 (154)
Q Consensus 74 i~i~nL~~K~kq~~~LfK~~~e~mf~E~S~~RR~LtKLsLiFSHMlaELkAl 125 (154)
=-|..|+..|.-++.-|+.+-+++ +...++.-+..++--......||.+.
T Consensus 14 ~~Ln~Li~~~~D~~~gY~~aae~~--~d~~lk~~f~~~a~~~~~~~~eL~~~ 63 (153)
T 4etr_A 14 DVLNDLLQTSKDGEAGFHACAEDL--RDPQLKAAMLEQSRDCAAAADELERI 63 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347788899999999998888887 45688888888888877777777774
No 15
>1tmx_A Hydroxyquinol 1,2-dioxygenase; beta barrel, oxidoreductase; HET: HGX; 1.75A {Pimelobacter simplex}
Probab=21.62 E-value=86 Score=26.40 Aligned_cols=67 Identities=16% Similarity=0.220 Sum_probs=40.3
Q ss_pred CCCcccchhhHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHhhhchhhhhccchhhhhhhhhHHHH--
Q psy9197 37 SPPFLLDILPDTYQRLKLIYTKYEDKMIVLHNNEFFNVFIVNLMRKCKQAIKLFKEGKEKMYDESSHYRRNLTKLSLV-- 114 (154)
Q Consensus 37 SPP~ildiLpdt~q~L~~I~~~~~~~~~~l~~~~yl~i~i~nL~~K~kq~~~LfK~~~e~mf~E~S~~RR~LtKLsLi-- 114 (154)
+.|-+..|+-+.-+||+.++.+-+ +.+.||.. ++..+-+.. +|- +.-|....=||=|
T Consensus 28 ~~~R~~~i~~~lv~hlh~~~re~~-----lT~~E~~~------------~i~~l~~~G-~~~---~~~r~E~~Ll~dvlG 86 (293)
T 1tmx_A 28 ADPRLKQVMQALTRHLHAFLREVR-----LTEAEWET------------GIGFLTDAG-HVT---NERRQEFILLSDVLG 86 (293)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHT-----CCHHHHHH------------HHHHHHHHH-HHC---CSSCCHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhC-----CCHHHHHH------------HHHHHHHhh-hcc---ccccCeeeeeccchh
Confidence 334447999999999999999875 56666643 333332222 222 2235555544434
Q ss_pred HHHHHHHHhh
Q psy9197 115 FSHMLSELKA 124 (154)
Q Consensus 115 FSHMlaELkA 124 (154)
+||.+-++..
T Consensus 87 ls~lvd~~~~ 96 (293)
T 1tmx_A 87 ASMQTIAMNN 96 (293)
T ss_dssp HHHHHHHHHC
T ss_pred hHHHHHHhhc
Confidence 5887766654
No 16
>1szi_A TIP47, mannose-6-phosphate receptor binding protein 1; 4-helix bundle, alpha/beta domain, PAT protein, lipid binding, peptide binding; 2.80A {Mus musculus} SCOP: a.24.23.1
Probab=21.56 E-value=65 Score=26.67 Aligned_cols=57 Identities=7% Similarity=0.202 Sum_probs=48.8
Q ss_pred CchhhhhHHHHHHHHHHHHHHHccCCCCCCCCCCCcccchhhHHHHHHHHHHhhhhc
Q psy9197 5 KLATDKRTLDKTWKLMDKVVKLCQHPKMNLKNSPPFLLDILPDTYQRLKLIYTKYED 61 (154)
Q Consensus 5 ~~~~D~r~~~k~~klmdkvv~lC~~prLnLknSPP~ildiLpdt~q~L~~I~~~~~~ 61 (154)
.-.++.|++..+..+.+.|..-|+.=-.++..-|+-|+|-+...-.....+.+....
T Consensus 133 ~E~~EsrtL~~arsLtqqLqstc~~lvssvqGLP~~vQdq~~~a~~~a~eL~s~fs~ 189 (247)
T 1szi_A 133 PEQVEARALSMFRDITQQLQSMCVALGASIQGLPSHVREQAQQARSQVNDLQATFSG 189 (247)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346789999999999999999999999999999999999888777777776665544
No 17
>2ozb_B U4/U6 small nuclear ribonucleoprotein PRP31; RNA-protein complex, ribonucleoprotein particle (RNP), PRE-M splicing, U4/U6 DI-snRNA, U4/U6 DI-snRNP; 2.60A {Homo sapiens} SCOP: a.183.1.1 PDB: 3siu_B 3siv_B
Probab=21.45 E-value=2.4e+02 Score=23.11 Aligned_cols=62 Identities=18% Similarity=0.223 Sum_probs=39.4
Q ss_pred HHHHHccCCCCCCCCCCCcccchhhHHHHHHHHHHhhhhcc-ccccCchhHHHHHHHHHHHHHHHHHHHhh
Q psy9197 22 KVVKLCQHPKMNLKNSPPFLLDILPDTYQRLKLIYTKYEDK-MIVLHNNEFFNVFIVNLMRKCKQAIKLFK 91 (154)
Q Consensus 22 kvv~lC~~prLnLknSPP~ildiLpdt~q~L~~I~~~~~~~-~~~l~~~~yl~i~i~nL~~K~kq~~~LfK 91 (154)
++|+..+|+ +++..+..-|.+|||+-. ...|...-... +..+++.| +.|+..-|.+++.|-+
T Consensus 64 ~~V~~ig~~-~~~~~~~~~L~~iL~~~~--~~~i~~aA~~S~G~~ls~~d-----l~~i~~~~~~v~~L~~ 126 (260)
T 2ozb_B 64 RTVKELGNS-LDKCKNNENLQQILTNAT--IMVVSVTASTTQGQQLSEEE-----LERLEEACDMALELNA 126 (260)
T ss_dssp HHHHHHTTC-GGGCTTCTTGGGTSCHHH--HHHHHHHHHSCCCCCCCHHH-----HHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCc-hhhccchHHHHHHcCHHH--HHHHHHHHHhcCCCCCCHHH-----HHHHHHHHHHHHHHHH
Confidence 677777884 555434556899999843 34444333322 34455555 6788889999988864
No 18
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=21.13 E-value=86 Score=25.52 Aligned_cols=23 Identities=26% Similarity=0.541 Sum_probs=13.5
Q ss_pred HHHHHHHcc--CCCCCCCCCCCccc
Q psy9197 20 MDKVVKLCQ--HPKMNLKNSPPFLL 42 (154)
Q Consensus 20 mdkvv~lC~--~prLnLknSPP~il 42 (154)
++.+.+.+. .|++.+..||.+++
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~ll 158 (339)
T 4ev6_A 134 IGRLHKLISTKKPRIVFERGIGFLL 158 (339)
T ss_dssp HHHHHHHSSSSSSCCCCCSCHHHHH
T ss_pred hHHHHHHHHcCCCccccccCHHHHH
Confidence 455666664 34555567777764
No 19
>3ro8_A Endo-1,4-beta-xylanase; glycosyl hydrolase family 10, GH10, (beta/alpha)8 fold, XYLA hydrolase; 1.34A {Paenibacillus SP} PDB: 3rdk_A 4e4p_A
Probab=20.93 E-value=95 Score=26.06 Aligned_cols=69 Identities=12% Similarity=0.328 Sum_probs=46.7
Q ss_pred HHHHHHHHHccCCCCCCC--------CCCCcccc---------------hhhHHHHHHHHHHhhhhccc-------cc--
Q psy9197 18 KLMDKVVKLCQHPKMNLK--------NSPPFLLD---------------ILPDTYQRLKLIYTKYEDKM-------IV-- 65 (154)
Q Consensus 18 klmdkvv~lC~~prLnLk--------nSPP~ild---------------iLpdt~q~L~~I~~~~~~~~-------~~-- 65 (154)
...|+++..|+.-.+.++ -.|+++.. ++.....|++.|+++|.+.. ++
T Consensus 62 ~~aD~~v~~a~~ngi~vrGHtLvWh~q~P~W~~~~~d~~g~~~~~s~~~l~~~~~~hI~~vv~rYkg~i~~WDVvNE~~~ 141 (341)
T 3ro8_A 62 TAADAMIDKVLAEGMKMHGHVLVWHQQSPAWLNTKKDDNNNTVPLGRDEALDNLRTHIQTVMKHFGNKVISWDVVNEAMN 141 (341)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEECSSSCCGGGTEEECTTSCEEECCHHHHHHHHHHHHHHHHHHHGGGSSEEEEEECCBC
T ss_pred HHHHHHHHHHHhCCCEEEeccccCcccCCHHHhccCccccccCCCCHHHHHHHHHHHHHHHHHHcCCcceEEEEeccccc
Confidence 457888999987777654 45777765 34456789999999998742 12
Q ss_pred ------------cCchhHHHH----HHHHHHHHHHHH
Q psy9197 66 ------------LHNNEFFNV----FIVNLMRKCKQA 86 (154)
Q Consensus 66 ------------l~~~~yl~i----~i~nL~~K~kq~ 86 (154)
++...|.++ ||..-.+-++++
T Consensus 142 ~~~~~p~~~~~~~r~s~w~~~lG~d~i~~AF~~Ar~a 178 (341)
T 3ro8_A 142 DNPSNPADYKASLRQTPWYQAIGSDYVEQAFLAAREV 178 (341)
T ss_dssp SSCSCTTCTGGGBCCCHHHHHHCTTHHHHHHHHHHHH
T ss_pred CCCCccccccccccCChHHHhcCHHHHHHHHHHHHHh
Confidence 233456665 666666666666
Done!